Query 040854
Match_columns 106
No_of_seqs 104 out of 215
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 12:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 5.9E-37 1.3E-41 200.7 5.2 60 47-106 1-60 (60)
2 PF09257 BCMA-Tall_bind: BCMA, 59.5 8.2 0.00018 23.6 1.9 21 51-71 16-36 (39)
3 PF15240 Pro-rich: Proline-ric 55.4 7.5 0.00016 30.4 1.6 19 4-22 2-20 (179)
4 PF07127 Nodulin_late: Late no 54.8 13 0.00029 22.9 2.4 17 1-17 1-17 (54)
5 PF05399 EVI2A: Ectropic viral 41.5 36 0.00077 27.8 3.5 10 15-24 146-155 (227)
6 PF10731 Anophelin: Thrombin i 40.3 32 0.0007 23.2 2.6 12 13-24 11-22 (65)
7 PF13956 Ibs_toxin: Toxin Ibs, 34.9 19 0.00042 19.0 0.7 6 1-6 1-6 (19)
8 PF05887 Trypan_PARP: Procycli 33.9 14 0.0003 28.3 0.0 22 1-22 1-23 (143)
9 PLN03161 Probable xyloglucan e 31.3 40 0.00087 27.9 2.3 20 1-20 1-20 (291)
10 PF07699 GCC2_GCC3: GCC2 and G 30.7 68 0.0015 18.9 2.7 28 75-102 10-41 (48)
11 PF10868 DUF2667: Protein of u 29.5 32 0.00069 24.3 1.3 20 78-97 63-82 (90)
12 PF15284 PAGK: Phage-encoded v 29.5 86 0.0019 20.9 3.2 9 1-9 1-9 (61)
13 PF01826 TIL: Trypsin Inhibito 28.8 3.2 7E-05 25.0 -3.4 41 46-90 8-49 (55)
14 PF15102 TMEM154: TMEM154 prot 26.1 46 0.00099 25.4 1.7 6 4-9 62-67 (146)
15 PF13985 YbgS: YbgS-like prote 25.6 1.7E+02 0.0037 21.9 4.6 24 1-24 1-24 (122)
16 PRK09040 hypothetical protein; 25.5 63 0.0014 24.9 2.4 13 1-13 22-34 (214)
17 TIGR01614 PME_inhib pectineste 25.5 43 0.00093 23.8 1.4 18 51-68 31-48 (178)
18 PF15330 SIT: SHP2-interacting 24.7 1E+02 0.0022 21.9 3.1 9 89-97 45-53 (107)
19 PF06692 MNSV_P7B: Melon necro 24.5 1E+02 0.0022 20.5 2.9 22 8-29 17-38 (61)
20 PLN02708 Probable pectinestera 24.0 2.1E+02 0.0044 25.7 5.5 21 48-68 43-63 (553)
21 PF08396 Toxin_34: Spider toxi 23.1 55 0.0012 22.6 1.5 12 85-96 10-21 (75)
22 COG2991 Uncharacterized protei 22.9 1.5E+02 0.0033 20.5 3.6 14 44-57 43-56 (77)
23 PF04202 Mfp-3: Foot protein 3 22.9 73 0.0016 21.8 2.0 10 6-15 8-17 (71)
24 PF00322 Endothelin: Endotheli 22.3 37 0.00079 20.0 0.4 17 54-70 4-21 (31)
25 PF12438 DUF3679: Protein of u 22.2 94 0.002 20.2 2.4 21 7-27 3-23 (56)
26 PHA02637 TNF-alpha-receptor-li 21.9 52 0.0011 24.6 1.2 26 70-98 41-74 (127)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=5.9e-37 Score=200.72 Aligned_cols=60 Identities=55% Similarity=1.353 Sum_probs=59.4
Q ss_pred CCchHhhHHHhcCCCcchHHHHHHHhcccccccCCCCCCCCCCCCcccCcccCCCCCCCC
Q 040854 47 QCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106 (106)
Q Consensus 47 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~~CpCY~~~~t~~g~pKCP 106 (106)
||+++|++||++++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=59.51 E-value=8.2 Score=23.65 Aligned_cols=21 Identities=38% Similarity=0.917 Sum_probs=16.6
Q ss_pred HhhHHHhcCCCcchHHHHHHH
Q 040854 51 KCDTRCSQTQYRKPCLFFCNK 71 (106)
Q Consensus 51 ~C~~RCs~~~~~~~C~~~C~~ 71 (106)
-|.-|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999998788899999984
No 3
>PF15240 Pro-rich: Proline-rich
Probab=55.41 E-value=7.5 Score=30.42 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040854 4 SFAIFILALFAISMLQTMV 22 (106)
Q Consensus 4 ~~~llll~l~~~~~~~~v~ 22 (106)
|++||.++||+|++++...
T Consensus 2 LlVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTD 20 (179)
T ss_pred hhHHHHHHHHHhhhccccc
Confidence 3455556677777766553
No 4
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=54.76 E-value=13 Score=22.87 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=9.8
Q ss_pred CchHHHHHHHHHHHHHH
Q 040854 1 MAKSFAIFILALFAISM 17 (106)
Q Consensus 1 MA~~~~llll~l~~~~~ 17 (106)
||+++.++.+++|++++
T Consensus 1 Ma~ilKFvY~mIiflsl 17 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSL 17 (54)
T ss_pred CccchhhHHHHHHHHHH
Confidence 88766655554444433
No 5
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=41.54 E-value=36 Score=27.78 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 040854 15 ISMLQTMVVA 24 (106)
Q Consensus 15 ~~~~~~v~~a 24 (106)
++++..|++|
T Consensus 146 ~LfLSTVVLA 155 (227)
T PF05399_consen 146 LLFLSTVVLA 155 (227)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=40.33 E-value=32 Score=23.16 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 040854 13 FAISMLQTMVVA 24 (106)
Q Consensus 13 ~~~~~~~~v~~a 24 (106)
+-++++..++.|
T Consensus 11 LC~aLva~vQ~A 22 (65)
T PF10731_consen 11 LCVALVAIVQSA 22 (65)
T ss_pred HHHHHHHHHhcC
Confidence 333333344444
No 7
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=34.95 E-value=19 Score=19.03 Aligned_cols=6 Identities=33% Similarity=0.224 Sum_probs=2.5
Q ss_pred CchHHH
Q 040854 1 MAKSFA 6 (106)
Q Consensus 1 MA~~~~ 6 (106)
|.+++.
T Consensus 1 MMk~vI 6 (19)
T PF13956_consen 1 MMKLVI 6 (19)
T ss_pred CceehH
Confidence 444433
No 8
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=33.85 E-value=14 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=0.0
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHHH
Q 040854 1 MA-KSFAIFILALFAISMLQTMV 22 (106)
Q Consensus 1 MA-~~~~llll~l~~~~~~~~v~ 22 (106)
|+ +.++||.++||+.+++..+.
T Consensus 1 m~pr~l~~LavLL~~A~Lfag~g 23 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAGVG 23 (143)
T ss_dssp -----------------------
T ss_pred Ccccccccccccccccccccccc
Confidence 56 45555555555544444443
No 9
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=31.33 E-value=40 Score=27.95 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 040854 1 MAKSFAIFILALFAISMLQT 20 (106)
Q Consensus 1 MA~~~~llll~l~~~~~~~~ 20 (106)
||.+++||+.+|++++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDR 20 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCC
Confidence 88888888776666655543
No 10
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=30.74 E-value=68 Score=18.87 Aligned_cols=28 Identities=36% Similarity=0.761 Sum_probs=19.9
Q ss_pred cccccCCCCCCCC---CCC-CcccCcccCCCC
Q 040854 75 KCLCVPPGYYGNK---AVC-PCYNNWKTKEGG 102 (106)
Q Consensus 75 ~C~CVP~Gt~gnk---~~C-pCY~~~~t~~g~ 102 (106)
.|.=.|.|||-+. .+| +|-.+..|...+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~G 41 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEG 41 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCcC
Confidence 4555689999544 579 899998875543
No 11
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=29.52 E-value=32 Score=24.32 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCCCCcccCcc
Q 040854 78 CVPPGYYGNKAVCPCYNNWK 97 (106)
Q Consensus 78 CVP~Gt~gnk~~CpCY~~~~ 97 (106)
|+|-|...-...|-|..+-+
T Consensus 63 C~~~~~~~~~~~C~Cc~~~~ 82 (90)
T PF10868_consen 63 CVPVGPPPGDGVCYCCYYVK 82 (90)
T ss_pred eccCCCCCCCcEEEEeccCC
Confidence 66755544567786666544
No 12
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.49 E-value=86 Score=20.86 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=4.3
Q ss_pred CchHHHHHH
Q 040854 1 MAKSFAIFI 9 (106)
Q Consensus 1 MA~~~~lll 9 (106)
|-++..+||
T Consensus 1 Mkk~ksifL 9 (61)
T PF15284_consen 1 MKKFKSIFL 9 (61)
T ss_pred ChHHHHHHH
Confidence 444554444
No 13
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=28.81 E-value=3.2 Score=24.99 Aligned_cols=41 Identities=34% Similarity=0.968 Sum_probs=27.7
Q ss_pred CCCchHhhHHHhcCCCcchHHHHHHHhcccccccCCCCCCCCC-CC
Q 040854 46 YQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKA-VC 90 (106)
Q Consensus 46 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~-~C 90 (106)
.+|++.|...|+.......|... |=.-|.| |+|++-|.+ .|
T Consensus 8 ~~C~~~C~~tC~~~~~~~~C~~~---C~~gC~C-~~G~v~~~~~~C 49 (55)
T PF01826_consen 8 SECGSPCPRTCDNPNNPEPCSEP---CVEGCFC-PPGYVRNDNGRC 49 (55)
T ss_dssp ESSETSTTCBSSCTTTSSSCSSS----ESEEEE-TTTEEEETTSEE
T ss_pred CcccCCcCCcCCCCCCCcCcCCC---CCccCCC-CCCeeEcCCCCE
Confidence 47899999999987777666633 3344777 668775554 44
No 14
>PF15102 TMEM154: TMEM154 protein family
Probab=26.08 E-value=46 Score=25.36 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.2
Q ss_pred HHHHHH
Q 040854 4 SFAIFI 9 (106)
Q Consensus 4 ~~~lll 9 (106)
++.++|
T Consensus 62 lIP~VL 67 (146)
T PF15102_consen 62 LIPLVL 67 (146)
T ss_pred eHHHHH
Confidence 344333
No 15
>PF13985 YbgS: YbgS-like protein
Probab=25.62 E-value=1.7e+02 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 040854 1 MAKSFAIFILALFAISMLQTMVVA 24 (106)
Q Consensus 1 MA~~~~llll~l~~~~~~~~v~~a 24 (106)
|-+|..|||.+-+.|++-..++++
T Consensus 1 M~Klatl~LTAtl~LaSGAAlAAd 24 (122)
T PF13985_consen 1 MTKLATLFLTATLTLASGAALAAD 24 (122)
T ss_pred CchHHHHHHHHHHHhhhhHHHHhh
Confidence 667777887766666655555544
No 16
>PRK09040 hypothetical protein; Provisional
Probab=25.53 E-value=63 Score=24.95 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=6.2
Q ss_pred CchHHHHHHHHHH
Q 040854 1 MAKSFAIFILALF 13 (106)
Q Consensus 1 MA~~~~llll~l~ 13 (106)
|+-+..+|+|+++
T Consensus 22 Ms~Lm~iFlli~v 34 (214)
T PRK09040 22 MSVLLGAFVLILV 34 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455554443
No 17
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=25.51 E-value=43 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=12.1
Q ss_pred HhhHHHhcCCCcchHHHH
Q 040854 51 KCDTRCSQTQYRKPCLFF 68 (106)
Q Consensus 51 ~C~~RCs~~~~~~~C~~~ 68 (106)
.=..-|..+.+++.|...
T Consensus 31 ~i~~~C~~t~~~~~C~~~ 48 (178)
T TIGR01614 31 LIKRICKKTEYPNFCIST 48 (178)
T ss_pred HHHHHHcCCCChHHHHHH
Confidence 334567788888888654
No 18
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.71 E-value=1e+02 Score=21.92 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=4.0
Q ss_pred CCCcccCcc
Q 040854 89 VCPCYNNWK 97 (106)
Q Consensus 89 ~CpCY~~~~ 97 (106)
+=|||.|+.
T Consensus 45 ~~p~YgNL~ 53 (107)
T PF15330_consen 45 DDPCYGNLE 53 (107)
T ss_pred CCccccccc
Confidence 334444443
No 19
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.50 E-value=1e+02 Score=20.53 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 040854 8 FILALFAISMLQTMVVAANGQG 29 (106)
Q Consensus 8 lll~l~~~~~~~~v~~a~~g~~ 29 (106)
||+++|++.++....+++++..
T Consensus 17 lLiliis~~f~lI~~l~qq~~~ 38 (61)
T PF06692_consen 17 LLILIISFVFFLITSLGQQGNT 38 (61)
T ss_pred HHHHHHHHHHHHHhhhccCCCe
Confidence 3333344333334444555544
No 20
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=24.00 E-value=2.1e+02 Score=25.69 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=16.2
Q ss_pred CchHhhHHHhcCCCcchHHHH
Q 040854 48 CPGKCDTRCSQTQYRKPCLFF 68 (106)
Q Consensus 48 C~~~C~~RCs~~~~~~~C~~~ 68 (106)
=+..=..-|+.+.+++.|...
T Consensus 43 ~~~~I~s~C~~T~YP~lC~sS 63 (553)
T PLN02708 43 TPPQILLACNATRFPDTCVSS 63 (553)
T ss_pred ccHHHHHhccCCCCcHHHHHH
Confidence 445556779999999999875
No 21
>PF08396 Toxin_34: Spider toxin omega agatoxin/Tx1 family; InterPro: IPR013605 The Tx1 family lethal spider neurotoxin induces excitatory symptoms in mice [].
Probab=23.12 E-value=55 Score=22.63 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.1
Q ss_pred CCCCCCCcccCc
Q 040854 85 GNKAVCPCYNNW 96 (106)
Q Consensus 85 gnk~~CpCY~~~ 96 (106)
|+|+.|.|+++|
T Consensus 10 G~k~dCqCc~~n 21 (75)
T PF08396_consen 10 GDKSDCQCCRDN 21 (75)
T ss_pred CCcccccccCCC
Confidence 788888888876
No 22
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=1.5e+02 Score=20.54 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=9.1
Q ss_pred CCCCCchHhhHHHh
Q 040854 44 KSYQCPGKCDTRCS 57 (106)
Q Consensus 44 ~~~~C~~~C~~RCs 57 (106)
+--||+..|+.|=+
T Consensus 43 K~CdC~~pCDt~~~ 56 (77)
T COG2991 43 KVCDCDEPCDTHKK 56 (77)
T ss_pred hhcCCCCchHHHHH
Confidence 34478888877633
No 23
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=22.93 E-value=73 Score=21.81 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 040854 6 AIFILALFAI 15 (106)
Q Consensus 6 ~llll~l~~~ 15 (106)
+||+|+||.+
T Consensus 8 VLlaLvLIg~ 17 (71)
T PF04202_consen 8 VLLALVLIGS 17 (71)
T ss_pred HHHHHHHHhh
Confidence 3333444443
No 24
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=22.32 E-value=37 Score=19.95 Aligned_cols=17 Identities=41% Similarity=1.087 Sum_probs=12.2
Q ss_pred HHHh-cCCCcchHHHHHH
Q 040854 54 TRCS-QTQYRKPCLFFCN 70 (106)
Q Consensus 54 ~RCs-~~~~~~~C~~~C~ 70 (106)
.||| .+..-+.|+-||-
T Consensus 4 pRCsC~s~~DkeC~yFCh 21 (31)
T PF00322_consen 4 PRCSCASWKDKECVYFCH 21 (31)
T ss_dssp --ECCSSSTHHHHHHHHH
T ss_pred cceecCCCcchhhheeec
Confidence 3888 5667888999985
No 25
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=22.18 E-value=94 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 040854 7 IFILALFAISMLQTMVVAANG 27 (106)
Q Consensus 7 llll~l~~~~~~~~v~~a~~g 27 (106)
+++++++++-+++-|..|.+|
T Consensus 3 ~~~~~il~~gVl~Gmq~An~G 23 (56)
T PF12438_consen 3 ILLVIILFFGVLLGMQQANHG 23 (56)
T ss_pred hHHHHHHHHHHHHhHHHHHhh
Confidence 445555566677777766543
No 26
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=21.91 E-value=52 Score=24.60 Aligned_cols=26 Identities=46% Similarity=1.112 Sum_probs=16.9
Q ss_pred HHhcccccccCCCCCCC-------CCCC-CcccCccc
Q 040854 70 NKCCKKCLCVPPGYYGN-------KAVC-PCYNNWKT 98 (106)
Q Consensus 70 ~~CC~~C~CVP~Gt~gn-------k~~C-pCY~~~~t 98 (106)
+.||.+| |||||=. .-+| ||-..-.|
T Consensus 41 ~~CC~kC---PPGt~v~~~Ct~~t~T~C~PCp~GTYT 74 (127)
T PHA02637 41 NLCCLSC---PPGTYASRLCDIKTNTQCTPCGSGTFT 74 (127)
T ss_pred CeEcCCC---CCCCEEeCcCCCCCCcccccCCCCCee
Confidence 5678877 7787632 3467 77666554
Done!