Query 040854
Match_columns 106
No_of_seqs 104 out of 215
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 20:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9e_C Anti-coagulant protein 38.3 2.9 9.8E-05 27.1 -1.8 50 46-99 13-79 (84)
2 1xu2_R Tumor necrosis factor r 35.6 15 0.00052 22.4 1.3 21 51-71 19-39 (47)
3 3o81_A Beta-2-microglobulin; I 28.2 12 0.00042 24.9 0.0 17 1-17 1-17 (119)
4 1nsc_A Neuraminidase; hydrolas 23.5 14 0.00047 31.0 -0.5 14 80-93 191-204 (390)
5 2htq_A Neuraminidase; zanamivi 23.4 30 0.001 29.0 1.5 17 80-96 187-203 (390)
6 3jts_B Beta-2-microglobulin; a 23.1 17 0.0006 24.1 0.0 17 1-17 1-17 (119)
7 4b7j_A Neuraminidase; hydrolas 22.2 25 0.00084 30.1 0.7 11 83-93 272-282 (469)
8 3tje_F Tumor necrosis factor r 21.6 33 0.0011 24.4 1.2 23 70-95 41-72 (156)
9 1kig_L Factor XA; glycoprotein 20.4 31 0.001 19.8 0.7 21 75-96 20-48 (51)
10 3bx4_B Aggretin beta chain; to 19.8 22 0.00077 22.8 0.0 7 1-7 1-7 (146)
No 1
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=38.34 E-value=2.9 Score=27.14 Aligned_cols=50 Identities=30% Similarity=0.733 Sum_probs=21.4
Q ss_pred CCCch-HhhHHHhcC-------CC-cchH-HHHHHHhcccccccCCCCCCCC-------CCCCcccCcccC
Q 040854 46 YQCPG-KCDTRCSQT-------QY-RKPC-LFFCNKCCKKCLCVPPGYYGNK-------AVCPCYNNWKTK 99 (106)
Q Consensus 46 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t~ 99 (106)
.+|++ +|...|... .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 57998 999999863 22 3678 66665 578885 4888773 568887654433
No 2
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=35.59 E-value=15 Score=22.43 Aligned_cols=21 Identities=33% Similarity=0.798 Sum_probs=17.5
Q ss_pred HhhHHHhcCCCcchHHHHHHH
Q 040854 51 KCDTRCSQTQYRKPCLFFCNK 71 (106)
Q Consensus 51 ~C~~RCs~~~~~~~C~~~C~~ 71 (106)
-|..||+.++.+..|-.||..
T Consensus 19 pC~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 19 PCQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp EGGGTTTSSSCCGGGHHHHHC
T ss_pred chhcccCCCCCcchHHHHHhh
Confidence 389999977788899999963
No 3
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Probab=28.19 E-value=12 Score=24.87 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHH
Q 040854 1 MAKSFAIFILALFAISM 17 (106)
Q Consensus 1 MA~~~~llll~l~~~~~ 17 (106)
||++++++++.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (119)
T 3o81_A 1 MGKAAAVVLVTLVALLG 17 (119)
T ss_dssp -----------------
T ss_pred CchhHHHHHHHHHHhhh
Confidence 88887777766555443
No 4
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=23.47 E-value=14 Score=30.98 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCcc
Q 040854 80 PPGYYGNKAVCPCY 93 (106)
Q Consensus 80 P~Gt~gnk~~CpCY 93 (106)
.+|+..|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 35777888999998
No 5
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=23.40 E-value=30 Score=28.99 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCcccCc
Q 040854 80 PPGYYGNKAVCPCYNNW 96 (106)
Q Consensus 80 P~Gt~gnk~~CpCY~~~ 96 (106)
.+|+..+.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46788899999999654
No 6
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}
Probab=23.08 E-value=17 Score=24.10 Aligned_cols=17 Identities=41% Similarity=0.616 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHH
Q 040854 1 MAKSFAIFILALFAISM 17 (106)
Q Consensus 1 MA~~~~llll~l~~~~~ 17 (106)
||++++++|+.++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (119)
T 3jts_B 1 MSRSVALAVLALLSLSG 17 (119)
T ss_dssp -----------------
T ss_pred CchhhHHHHHHHHhhhh
Confidence 88887766666555443
No 7
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=22.25 E-value=25 Score=30.13 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=4.3
Q ss_pred CCCCCCCCCcc
Q 040854 83 YYGNKAVCPCY 93 (106)
Q Consensus 83 t~gnk~~CpCY 93 (106)
+..+.|||.||
T Consensus 272 s~~HiEECSCY 282 (469)
T 4b7j_A 272 PNYHYEECSCY 282 (469)
T ss_dssp TTCCCCSCEEE
T ss_pred Ccccceeeeec
Confidence 33333333333
No 8
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=21.57 E-value=33 Score=24.38 Aligned_cols=23 Identities=39% Similarity=0.961 Sum_probs=14.3
Q ss_pred HHhcccccccCCCCCCC--------CCCC-CcccC
Q 040854 70 NKCCKKCLCVPPGYYGN--------KAVC-PCYNN 95 (106)
Q Consensus 70 ~~CC~~C~CVP~Gt~gn--------k~~C-pCY~~ 95 (106)
+.||.+| |||+|=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 4566666 6887732 3567 77665
No 9
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=20.39 E-value=31 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=13.3
Q ss_pred cccccCCCCC--C------CCCCCCcccCc
Q 040854 75 KCLCVPPGYY--G------NKAVCPCYNNW 96 (106)
Q Consensus 75 ~C~CVP~Gt~--g------nk~~CpCY~~~ 96 (106)
+|.| |+|.. . ..+||||.+..
T Consensus 20 ~C~C-~~Gy~L~~d~~tC~dide~pCg~~~ 48 (51)
T 1kig_L 20 RCSC-AHGYVLGDDSKSCVSTERFPCGKFT 48 (51)
T ss_dssp CCCC-CTTEEECTTSSCEEECSSSCTTCCC
T ss_pred EEeC-CCCcEECCCCCccccCCcccCCCcc
Confidence 4666 56653 2 24789998764
No 10
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=19.78 E-value=22 Score=22.83 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=0.0
Q ss_pred CchHHHH
Q 040854 1 MAKSFAI 7 (106)
Q Consensus 1 MA~~~~l 7 (106)
|.+++.+
T Consensus 1 M~~~~~~ 7 (146)
T 3bx4_B 1 MGRFIFV 7 (146)
T ss_dssp -------
T ss_pred CceeHHH
Confidence 5554443
Done!