Query 040854
Match_columns 106
No_of_seqs 104 out of 215
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 20:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 66.3 0.23 1.7E-05 30.3 -1.9 54 45-99 7-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 58.2 1.8 0.00013 24.5 1.1 19 73-91 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 49.2 3.4 0.00025 22.7 1.3 20 51-70 16-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 44.0 2.3 0.00016 24.6 0.0 25 71-98 16-49 (59)
5 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 28.1 1.4 9.9E-05 25.7 -2.9 35 46-84 11-45 (60)
6 d2aepa1 b.68.1.1 (A:83-469) In 26.4 6.1 0.00044 31.1 -0.2 18 79-96 185-202 (387)
7 d1f8ea_ b.68.1.1 (A:) Influenz 23.4 7.5 0.00054 30.6 -0.2 17 80-96 188-204 (388)
8 d2c7na1 g.39.1.15 (A:18-73) Ra 21.0 6.3 0.00046 23.4 -0.9 16 82-97 7-26 (56)
9 d1kloa3 g.3.11.2 (A:122-172) L 17.2 20 0.0014 19.6 0.8 21 76-96 1-28 (51)
10 d1ccva_ g.22.1.1 (A:) Chymotry 17.0 0.94 6.9E-05 26.0 -5.3 40 46-90 10-50 (56)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=66.26 E-value=0.23 Score=30.33 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=24.0
Q ss_pred CCCCch-HhhHHHhcCCCcchHHHHHHH------hcccccccCCCCCCCC-------CCCCcccCcccC
Q 040854 45 SYQCPG-KCDTRCSQTQYRKPCLFFCNK------CCKKCLCVPPGYYGNK-------AVCPCYNNWKTK 99 (106)
Q Consensus 45 ~~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t~ 99 (106)
..+|.+ .|...|+.-.....|...++. |=.-|.| |+|++-|. ++|||+.+=++.
T Consensus 7 y~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 7 YDSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp CC-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 346765 577777766555555555543 3355778 89998654 468998765543
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.16 E-value=1.8 Score=24.52 Aligned_cols=19 Identities=47% Similarity=1.482 Sum_probs=14.7
Q ss_pred cccccccCCCCCCCC-CCCC
Q 040854 73 CKKCLCVPPGYYGNK-AVCP 91 (106)
Q Consensus 73 C~~C~CVP~Gt~gnk-~~Cp 91 (106)
|++|.|-.||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888876 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.21 E-value=3.4 Score=22.66 Aligned_cols=20 Identities=35% Similarity=0.844 Sum_probs=17.8
Q ss_pred HhhHHHhcCCCcchHHHHHH
Q 040854 51 KCDTRCSQTQYRKPCLFFCN 70 (106)
Q Consensus 51 ~C~~RCs~~~~~~~C~~~C~ 70 (106)
-|.-|||..+-+-.|.+||+
T Consensus 16 pc~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 16 PCQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp EGGGTTTSSSCCGGGHHHHH
T ss_pred cceeecCCCCCchhhhhhcc
Confidence 38899999889999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.99 E-value=2.3 Score=24.63 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=16.7
Q ss_pred HhcccccccCCCCC------CC--CCCC-CcccCccc
Q 040854 71 KCCKKCLCVPPGYY------GN--KAVC-PCYNNWKT 98 (106)
Q Consensus 71 ~CC~~C~CVP~Gt~------gn--k~~C-pCY~~~~t 98 (106)
.||.+| |||+| +. ..+| ||-..-.|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 466665 89988 42 4688 88776543
No 5
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=28.05 E-value=1.4 Score=25.68 Aligned_cols=35 Identities=26% Similarity=0.625 Sum_probs=25.7
Q ss_pred CCCchHhhHHHhcCCCcchHHHHHHHhcccccccCCCCC
Q 040854 46 YQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYY 84 (106)
Q Consensus 46 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~ 84 (106)
..|+++|..-|+.-.....|.+.|- .-|.| |+|+.
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred CcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 4688888888887666666766443 55777 88876
No 6
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=26.41 E-value=6.1 Score=31.11 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=14.8
Q ss_pred cCCCCCCCCCCCCcccCc
Q 040854 79 VPPGYYGNKAVCPCYNNW 96 (106)
Q Consensus 79 VP~Gt~gnk~~CpCY~~~ 96 (106)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367888999999999765
No 7
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=23.45 E-value=7.5 Score=30.59 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCcccCc
Q 040854 80 PPGYYGNKAVCPCYNNW 96 (106)
Q Consensus 80 P~Gt~gnk~~CpCY~~~ 96 (106)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57888899999999763
No 8
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.96 E-value=6.3 Score=23.37 Aligned_cols=16 Identities=44% Similarity=1.165 Sum_probs=11.7
Q ss_pred CCCCC---CCCC-CcccCcc
Q 040854 82 GYYGN---KAVC-PCYNNWK 97 (106)
Q Consensus 82 Gt~gn---k~~C-pCY~~~~ 97 (106)
|+||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 56775 4789 6999864
No 9
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.20 E-value=20 Score=19.62 Aligned_cols=21 Identities=29% Similarity=0.768 Sum_probs=14.1
Q ss_pred ccccCCCCCCCC-------CCCCcccCc
Q 040854 76 CLCVPPGYYGNK-------AVCPCYNNW 96 (106)
Q Consensus 76 C~CVP~Gt~gnk-------~~CpCY~~~ 96 (106)
|+|-|.||.++. ..|+|-.+.
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v 28 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPHV 28 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTTE
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCCC
Confidence 788899987654 366665543
No 10
>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis mellifera) [TaxId: 7460]}
Probab=17.02 E-value=0.94 Score=26.02 Aligned_cols=40 Identities=28% Similarity=0.786 Sum_probs=25.1
Q ss_pred CCCchHhhHHHhcCCCcchHHHHHHHhcccccccCCCCCCCC-CCC
Q 040854 46 YQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNK-AVC 90 (106)
Q Consensus 46 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk-~~C 90 (106)
.+|+++|...|+.. ....|.+.| =.-|.| |+|++-|. ..|
T Consensus 10 ~~Cg~~C~~tC~~~-~~~~C~~~C---~~GC~C-~~G~v~~~~g~C 50 (56)
T d1ccva_ 10 NTCGSACAPTCAQP-KTRICTMQC---RIGCQC-QEGFLRNGEGAC 50 (56)
T ss_dssp EEEECTTCCCSSCS-CCCCSSSSC---EEEEEE-CTTCEEETTTEE
T ss_pred CcccCcCccccCcc-CCCcCCCCC---CCCCCC-CCCeeEcCCCCE
Confidence 46888888888753 344454433 234777 88887654 345
Done!