BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040856
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 242/394 (61%), Gaps = 20/394 (5%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
++EA F HLK+ L+ K ++L EQ ALELPLH R RLEA W I Y K++D N
Sbjct: 168 LDEARVFAISHLKE-LSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDAN 226
Query: 61 HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
LLELA LD+N++Q+ YQ +L++ S WW+ GL KL FAR RL+ SF+W +G+ FEPQ
Sbjct: 227 QVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQ 286
Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
++ R + + +T+IDDIYD+YGTLDELELFT+AVERWD+N AI LPDYMK+CF A
Sbjct: 287 YSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN-AINDLPDYMKLCFLA 345
Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
LYN ++E+AYD LK + + L + +W L AFL EAKW +NK PT ++Y NA S
Sbjct: 346 LYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKS 405
Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
+GPL I AY + I ++E+E L+ D+I S IFRL +DL ++S EI RG+ +
Sbjct: 406 SSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETAN 465
Query: 301 SIQCYMHET------------NLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
S+ CYM NLI + WKK M+ + S ++ E +NL R
Sbjct: 466 SVSCYMRTKGISEELATESVMNLIDETWKK--MNKEKLGG---SLFAKPFVETAINLARQ 520
Query: 349 SHFMYLHGDGHGVQNQETMDEAFALLFQPI-PLE 381
SH Y +GD H ++ T +++ +PI P E
Sbjct: 521 SHCTYHNGDAHTSPDELTRKRVLSVITEPILPFE 554
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 327 bits (838), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/393 (44%), Positives = 248/393 (63%), Gaps = 23/393 (5%)
Query: 1 MEEAWQFTSKHLKQCLN--SNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD 58
+E A +F +K L++ L+ N+ DE+L R +L+LPLHWR+ +EARWFI+ Y +R D
Sbjct: 162 LELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPD 221
Query: 59 KNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFE 118
N + ELAKL+FNI+QAT+Q+ELKD+S WW EKL F R RLV SFFW +GM FE
Sbjct: 222 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FE 280
Query: 119 P-QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKIC 177
P Q Y R++ + L TVIDDIYD+YGTLDELELFT+ +RWD +I +LP YM++C
Sbjct: 281 PHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTE-SITRLPYYMQLC 339
Query: 178 FFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNA 237
++ ++N++S+ AYDILK+ L ++ S + L++A+ EAKWYH+ Y P+L+EYL A
Sbjct: 340 YWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIA 399
Query: 238 ALSIAGPLITITAYLSATDPIVEKE-LEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRG 296
+S+A P I Y + + + ++ L D++ + I RL DDLGTS E+ RG
Sbjct: 400 KISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARG 459
Query: 297 DVSKSIQCYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFILN 344
DV K+IQCYM ETN LIR+ WK + ++ D ++ N
Sbjct: 460 DVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAA-----N 514
Query: 345 LVRVSHFMYLHGDGHGVQNQETMDEAFALLFQP 377
+ RV+ F+YLHGDG GVQ+ +T + LLF+P
Sbjct: 515 IGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/389 (43%), Positives = 246/389 (63%), Gaps = 17/389 (4%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
+E A +F +K L++ +N D DL + +L++PLHWR+ R A +I Y KR D N
Sbjct: 158 LESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMN 217
Query: 61 HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
+LELA LD NI+QA +QEELK+ WW++ G EKL FAR RLV +FW G++ Q
Sbjct: 218 PVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQ 277
Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
A +R ++ ALITVIDDIYD+YGTL+ELE FT+ + RWDIN +I QLPDYM++CF A
Sbjct: 278 HASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDIN-SIDQLPDYMQLCFLA 336
Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
L NFV + +YD++K++ + + ++ SW+ L ++VEA+W++ + P+LEEYL+N+ S
Sbjct: 337 LNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQS 396
Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
I+GP + + TD ++ ++ L D+++WSS + RL DDLGTS +E+ RGDV K
Sbjct: 397 ISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPK 456
Query: 301 SIQCYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
S+QCYM + N LI ++WKK M+ R S KDSP + ++L R+
Sbjct: 457 SLQCYMSDYNASEAEARKHVKWLIAEVWKK--MNAERVS--KDSPFGKDFIGCAVDLGRM 512
Query: 349 SHFMYLHGDGHGVQNQETMDEAFALLFQP 377
+ MY +GDGHG Q+ + LF+P
Sbjct: 513 AQLMYHNGDGHGTQHPIIHQQMTRTLFEP 541
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 314 bits (805), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 167/376 (44%), Positives = 239/376 (63%), Gaps = 27/376 (7%)
Query: 4 AWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHAL 63
A F +K L++ + +KD +L RALELP HWR+ AR FI+ Y++R D N +
Sbjct: 189 ARDFATKFLQKRVLVDKDI-NLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTV 247
Query: 64 LELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAY 123
LELAKLDFN++QA +Q+ELK+ S WW GL +L F R R+V ++W G+V Q Y
Sbjct: 248 LELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGY 307
Query: 124 SRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYN 183
R +LT AL+T IDD++DIYGTL+EL+LFT A++RWDI ++KQLP YM+IC+ AL+N
Sbjct: 308 ERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIE-SMKQLPPYMQICYLALFN 366
Query: 184 FVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAG 243
FV+E+AYD L+ + D ++ W+GL++++L+EAKWY+ + P+LEEY+KN+ +SI G
Sbjct: 367 FVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGG 426
Query: 244 PLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQ 303
I + TD I E+ E + D+++ S I RL DD+GTS DE++RGDV KS+Q
Sbjct: 427 IPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQ 486
Query: 304 CYMHETN------------LIRQMWKKVMMDVSRASNNKDSPLSQITNEFI---LNLVRV 348
CYM+E N LI Q WK MM NK+ S + F+ NL R+
Sbjct: 487 CYMNEKNASEEEAREHVRSLIDQTWK--MM-------NKEMMTSSFSKYFVEVSANLARM 537
Query: 349 SHFMYLH-GDGHGVQN 363
+ ++Y H DG G+Q+
Sbjct: 538 AQWIYQHESDGFGMQH 553
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 219/387 (56%), Gaps = 10/387 (2%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKN 60
++EA FT+ HL + S D L+E+ AL+ + +PR+EAR +++VY+ + N
Sbjct: 171 LDEAISFTTHHLSLAVASL--DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHN 228
Query: 61 HALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQ 120
ALLE AK+DFN+LQ +++EL +I WWKD KL +AR R+V +FW G+ FEPQ
Sbjct: 229 KALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQ 288
Query: 121 FAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFA 180
++ R++LT +A+ +++DD YD Y T +EL +TNA+ERWDI I ++P+YMK + A
Sbjct: 289 YSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIK-CIDEIPEYMKPSYKA 347
Query: 181 LYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240
L + E+ + + ++ KN+ + L Q++LVEAKW Y P+ EE+ NA +
Sbjct: 348 LLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407
Query: 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSK 300
++ IT+++ D + + ++ S+P +IQ S+ I R +DD+ + +R D
Sbjct: 408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCS 467
Query: 301 SIQCYMHETNLIRQ----MWKKVMMDVSRASNNKDSPLSQITNEFI---LNLVRVSHFMY 353
+I+CYM E + Q ++ K + + N + +++ E + LNL RV +Y
Sbjct: 468 AIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLY 527
Query: 354 LHGDGHGVQNQETMDEAFALLFQPIPL 380
GDG+ + +LL +PI L
Sbjct: 528 REGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 206/373 (55%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I+R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 151 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 208
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 209 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 268
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 269 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 327
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 328 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 387
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 388 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 446
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 447 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 501
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 502 IVEVTYIHNLDGY 514
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 166 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 223
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 224 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 283
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 284 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 342
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 343 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 402
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 403 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 461
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 462 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 516
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 517 IVEVTYIHNLDGY 529
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 206/373 (55%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 166 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 223
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +FW +G+ FEP
Sbjct: 224 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEP 283
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 284 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 342
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 343 AILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALA 402
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ L+ T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 403 TTTYYLLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 461
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 462 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 516
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 517 IIEVTYIHNLDGY 529
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/413 (32%), Positives = 223/413 (53%), Gaps = 39/413 (9%)
Query: 1 MEEAWQFTSKHLKQCLNSNK------DDEDLNEQARRALELPLHWRMPRLEARWFINVYE 54
++EA F +K+L++ L ++ + ++L+++ + AL+ H +PR+EA+ + VY
Sbjct: 411 LDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY- 469
Query: 55 KRKD--------------KNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSF 100
R D N LEL KLDFNI+Q+ +QEE+K+++ W++D GL +F
Sbjct: 470 -RPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTF 527
Query: 101 ARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER 160
AR R + +F +EPQ+A R + T L TV+DD+YD YGTLDEL+LFT AV R
Sbjct: 528 ARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRR 587
Query: 161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAK 220
WD++F + LPDYMK+C+ Y+ V EVA++ K+Q + + + W L + EA+
Sbjct: 588 WDLSFT-ENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAE 646
Query: 221 WYHNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKE-LEYLE--SNPDVIQWSS 277
W +Y PTL+EY+KN SI ++ ++ L ++ +E LE ++ + + +S
Sbjct: 647 WLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNS 706
Query: 278 RIFRLLDDLGTSSDEIQRGDVSKSIQCYMHE---------TNLIRQMWKKVMMDVSRAS- 327
I RL DD T E RG+++ SI+CYM + + I + + + +++R
Sbjct: 707 LISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFL 766
Query: 328 NNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPL 380
D P + + + RV+ ++ GDG GV E D L +P+PL
Sbjct: 767 KPDDVPFA--CKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 205/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +F +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I+R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 204/373 (54%), Gaps = 23/373 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDK 59
+E+A F++ HL+ K L EQ ALE LH +PR+E R+FI+ +Y+K + K
Sbjct: 164 LEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSK 221
Query: 60 NHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEP 119
N+ LL AKLDFN+LQ +++EL +S WWKD L +AR R+V +F +G+ FEP
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEP 281
Query: 120 QFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFF 179
Q++ +R +L T+++I+++DD +D YGT+ ELE +T+A++RWDIN I +LPDYMKI +
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDIN-EIDRLPDYMKISYK 340
Query: 180 ALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239
A+ + + ++ S + +++ + VE+ W+ Y P + EYL NA
Sbjct: 341 AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA 400
Query: 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299
+ + T+YL E++ E+L NP +++ S I R++DD T E RG ++
Sbjct: 401 TTTYYYLATTSYLGMKSA-TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA 459
Query: 300 KSIQCYMHE------------TNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVR 347
I+C M + N+ WK + + R +P+S ILNL R
Sbjct: 460 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP-----TPVSTEFLTPILNLAR 514
Query: 348 VSHFMYLHG-DGH 359
+ Y+H DG+
Sbjct: 515 IVEVTYIHNLDGY 527
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/406 (32%), Positives = 212/406 (52%), Gaps = 32/406 (7%)
Query: 1 MEEAWQFTSKHLKQCL-NSNKDDE-----DLNEQARRALELPLHWRMPRLEARWFI---- 50
MEEA T ++L+ L N + D+ ++ + AL+ P H MPRLEAR +I
Sbjct: 383 MEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYG 442
Query: 51 --------NVYEKRKDKNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFAR 102
VY N LELAKLDFN +Q+ +Q EL+D+ WWK G + L+F R
Sbjct: 443 PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTR 501
Query: 103 SRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWD 162
R+ +F +FEP+F+ R V T T ++DD+YD +G+LD+L+LFT +V+RWD
Sbjct: 502 ERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWD 561
Query: 163 INFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWY 222
++ + Q+P MKICF YN +++A + ++Q D L I+N W L+A+ EA+W
Sbjct: 562 LSL-VDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWS 620
Query: 223 HNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRL 282
KY P+ EY++NA++SIA + + + L + + ++ L ++ +Q RL
Sbjct: 621 EAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRL 680
Query: 283 LDDLGTSSDEIQRGDVSKSIQCYMHETNLIRQ---------MWKKVMMDVSRASNNKDSP 333
++D T E +G+V+ +IQCYM + I + + + + +++R N P
Sbjct: 681 VNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNKIP 740
Query: 334 LSQITNEFILNLVRVSHFMYLHGDGHGV-QNQETMDEAFALLFQPI 378
I + R+ Y+ GDG + + E + LFQP+
Sbjct: 741 --DIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 200/400 (50%), Gaps = 26/400 (6%)
Query: 1 MEEAWQFTSKHLKQCLNSN-KDDEDLNEQARRALELPLHWRMPRLEARWFINVYE----- 54
M++A +F +L++ L + + L ++ +E P H +PRLEAR +I+ Y+
Sbjct: 359 MDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVW 418
Query: 55 KRKD-------KNHALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVT 107
+RK N LELAKLDFNI+Q+ +QEELK ++ WWK+ G+ + ++F R R+
Sbjct: 419 QRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAE 477
Query: 108 SFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAI 167
+F FEP+++ +R T L + DD+ DI+ TLDEL+ FT V+RWD + +
Sbjct: 478 VYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL-L 534
Query: 168 KQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYA 227
++P+ M+ CF + + EV D++K Q D L I+ W ++ E +W Y
Sbjct: 535 HEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYI 594
Query: 228 PTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLG 287
PT EEYLK A+S+ T+ L + + + +E + ++ + S +RL +D
Sbjct: 595 PTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTK 654
Query: 288 TSSDEIQRGDVSKSIQCYMH------ETNLIRQMWKKVMMDVSRASNNKDSPLSQI---T 338
T E RG + I CYM E + I+ + + V + AS P + I
Sbjct: 655 TYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGC 714
Query: 339 NEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPI 378
FI NL Y DG+G+ N+E D + PI
Sbjct: 715 KSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 23 EDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD-------------KNHALLELAKL 69
+DL + ALE+P + +PR+E R++I+ Y D N+ LELAK
Sbjct: 385 KDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQ 444
Query: 70 DFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLT 129
D+N QA +Q E W+++ L E RS L+ ++ +FE + ++ R V
Sbjct: 445 DYNNCQAQHQLEWDIFQKWYEENRLSE-WGVRRSELLECYYLAAATIFESERSHERMVWA 503
Query: 130 ITLALITVI 138
+ L+ I
Sbjct: 504 KSSVLVKAI 512
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 291 DEIQRGDVSKSIQCYMHETNLIRQM--WKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
+ + DV++++ CY+ E L + W ++ ++ A+++ D P + F L++
Sbjct: 75 NAVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHP--GVNQPF---LIKT 129
Query: 349 SHFMYLHGDGHGVQNQETMDEAFAL-----LFQPIPLEDNKHM 386
+H++ V A L LF +PLE + M
Sbjct: 130 NHYLATLYKNTSVLENHHWRSAVGLLRESGLFSHLPLESRQQM 172
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 291 DEIQRGDVSKSIQCYMHETNLIRQM--WKKVMMDVSRASNNKDSPLSQITNEFILNLVRV 348
+ + DV++++ CY+ E L + W ++ ++ A+++ D P + F L++
Sbjct: 84 NAVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHP--GVNQPF---LIKT 138
Query: 349 SHFMYLHGDGHGVQNQETMDEAFAL-----LFQPIPLEDNKHM 386
+H++ V A L LF +PLE + M
Sbjct: 139 NHYLATLYKNTSVLENHHWRSAVGLLRESGLFSHLPLESRQQM 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,644,902
Number of Sequences: 62578
Number of extensions: 478931
Number of successful extensions: 1058
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 23
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)