Query 040856
Match_columns 391
No_of_seqs 167 out of 814
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 9E-116 3E-120 905.0 34.3 372 1-380 171-554 (554)
2 3n0f_A Isoprene synthase; terp 100.0 5E-116 2E-120 908.1 29.9 372 1-379 168-551 (555)
3 3m00_A Aristolochene synthase; 100.0 1E-114 5E-119 895.2 34.7 371 1-380 166-550 (550)
4 2ong_A 4S-limonene synthase; m 100.0 2E-110 6E-115 870.7 35.1 373 1-379 158-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 3E-110 1E-114 868.6 32.4 373 1-379 162-549 (549)
6 3p5p_A Taxadiene synthase; cla 100.0 4E-109 1E-113 884.2 34.9 374 1-383 359-759 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 3E-109 1E-113 890.2 34.1 373 1-380 411-817 (817)
8 2j5c_A 1,8-cineole synthase; t 100.0 2E-109 5E-114 865.9 29.4 371 1-379 186-569 (569)
9 3s9v_A Abietadiene synthase, c 100.0 7E-109 2E-113 884.2 33.8 370 1-378 383-784 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 1.8E-77 6.2E-82 634.2 23.7 331 1-379 357-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 5.2E-49 1.8E-53 386.9 14.6 242 71-322 11-269 (337)
12 1di1_A Aristolochene synthase; 100.0 1E-46 3.5E-51 364.5 15.9 230 76-322 12-263 (300)
13 3bny_A Aristolochene synthase; 100.0 1.7E-45 5.9E-50 359.4 14.6 230 70-316 20-260 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 7.2E-43 2.5E-47 349.7 16.4 239 76-322 56-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 1.1E-29 3.8E-34 257.1 14.6 238 76-321 125-377 (433)
16 1yyq_A Trichodiene synthase; t 99.6 5E-16 1.7E-20 154.2 10.9 210 80-311 30-253 (374)
17 3acx_A Dehydrosqualene synthas 53.4 1.2E+02 0.0042 27.8 11.5 111 123-252 38-151 (293)
18 2ee7_A Sperm flagellar protein 30.0 2E+02 0.0069 23.2 7.8 66 76-142 11-84 (127)
19 1xkm_B Distinctin chain B; por 28.2 25 0.00086 19.9 1.3 12 44-55 7-18 (26)
20 3lmd_A Geranylgeranyl pyrophos 27.1 1.3E+02 0.0046 28.8 7.2 84 199-289 160-245 (360)
21 4hd1_A Squalene synthase HPNC; 26.6 3.7E+02 0.013 24.5 15.3 100 130-252 46-147 (294)
22 3rmg_A Octaprenyl-diphosphate 25.5 1.4E+02 0.0049 28.1 7.1 90 197-291 131-221 (334)
23 2e8v_A Geranylgeranyl pyrophos 25.4 1.5E+02 0.0053 27.9 7.3 85 200-290 132-220 (340)
24 3pt8_A Hemoglobin II; oxygen c 25.0 2.7E+02 0.0092 22.4 8.6 76 129-215 65-140 (152)
25 2q80_A Geranylgeranyl pyrophos 22.8 3.4E+02 0.012 25.0 9.0 85 197-289 109-194 (301)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=8.8e-116 Score=905.04 Aligned_cols=372 Identities=35% Similarity=0.631 Sum_probs=351.9
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhcHH
Q 040856 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQE 80 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 80 (391)
||||++||++||++++. .+ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 171 LdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 248 (554)
T 3g4d_A 171 LDEAISFTTHHLSLAVA-SL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK 248 (554)
T ss_dssp HHHHHHHHHHHHHHHST-TC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHH
Confidence 79999999999999985 45 48899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh
Q 040856 81 ELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER 160 (391)
Q Consensus 81 El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r 160 (391)
||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|
T Consensus 249 El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~R 328 (554)
T 3g4d_A 249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIER 328 (554)
T ss_dssp HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcccc
Q 040856 161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240 (391)
Q Consensus 161 Wd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s 240 (391)
||++ ++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||++||+|+.+||+||+||||+||.+|
T Consensus 329 WD~~-~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS 407 (554)
T 3g4d_A 329 WDIK-CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407 (554)
T ss_dssp CCGG-GGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGG
T ss_pred cCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhcccee
Confidence 9999 999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch---------
Q 040856 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL--------- 311 (391)
Q Consensus 241 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~--------- 311 (391)
+|++++++++++++|+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 408 sg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i 487 (554)
T 3g4d_A 408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVF 487 (554)
T ss_dssp SCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHH
T ss_pred ehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999997
Q ss_pred ---HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhccccccC
Q 040856 312 ---IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIPL 380 (391)
Q Consensus 312 ---ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pv~~ 380 (391)
|+++||+||+| ++++ + ++|++|+++++|+||+++++|++|||||.|+.+||++|++||++|||+
T Consensus 488 ~~~Ie~~wK~lN~e--~l~~--~-~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 488 NKHVESAWKDLNQE--FLKP--T-EMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHH--HSSS--C-SSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHH--HhcC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999999 9997 7 899999999999999999999999999998788999999999999985
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=5e-116 Score=908.05 Aligned_cols=372 Identities=45% Similarity=0.817 Sum_probs=359.0
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhcHH
Q 040856 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQE 80 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 80 (391)
||||++||++||++++.+.+ +++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 168 LdeA~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~ 246 (555)
T 3n0f_A 168 LDEARVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246 (555)
T ss_dssp HHHHHHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHH
Confidence 79999999999999764234 58899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh
Q 040856 81 ELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER 160 (391)
Q Consensus 81 El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r 160 (391)
||++++|||+++||.+++||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|
T Consensus 247 EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~R 326 (555)
T 3n0f_A 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVER 326 (555)
T ss_dssp HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcccc
Q 040856 161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240 (391)
Q Consensus 161 Wd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s 240 (391)
||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|++++|+++++||++||+|+.+||+||+||||+||.+|
T Consensus 327 WD~~-~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS 405 (555)
T 3n0f_A 327 WDVN-AINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKS 405 (555)
T ss_dssp TCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch---------
Q 040856 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL--------- 311 (391)
Q Consensus 241 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~--------- 311 (391)
+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 406 sg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i 485 (555)
T 3n0f_A 406 SSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESV 485 (555)
T ss_dssp TSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999997
Q ss_pred ---HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhcccccc
Q 040856 312 ---IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIP 379 (391)
Q Consensus 312 ---ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pv~ 379 (391)
|+++||+||+| ++++ + ++|++|+++++|+||+++++|++|||||.|+.+||++|++||++|||
T Consensus 486 ~~~Ie~~wK~lN~e--~l~~--~-~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 486 MNLIDETWKKMNKE--KLGG--S-LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHH--HHSC--C-SSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHH--HhcC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999 9997 7 89999999999999999999999999999877899999999999997
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.5e-114 Score=895.24 Aligned_cols=371 Identities=35% Similarity=0.649 Sum_probs=355.4
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHH-HhhccccccHHHHHHHhhhhHHHhhhcH
Q 040856 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFIN-VYEKRKDKNHALLELAKLDFNILQATYQ 79 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~-~Y~~~~~~n~~lLelAkldFn~~Q~~hq 79 (391)
||||++||++||+++++ .+ +++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+||++||
T Consensus 166 LdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 243 (550)
T 3m00_A 166 LEDALAFSTIHLESAAP-HL-KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHK 243 (550)
T ss_dssp GTTHHHHHHHHHHHHGG-GC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cc-CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 79999999999999985 45 478999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhh
Q 040856 80 EELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVE 159 (391)
Q Consensus 80 ~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~ 159 (391)
+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+
T Consensus 244 ~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~ 323 (550)
T 3m00_A 244 QELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 323 (550)
T ss_dssp HHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhccc
Q 040856 160 RWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAAL 239 (391)
Q Consensus 160 rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~ 239 (391)
|||++ ++++||+|||+||.+|+++++|++.++.+.+|.++++|++++|+++++||++||+|+.+||+||+||||+||.+
T Consensus 324 RWD~~-~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~v 402 (550)
T 3m00_A 324 RWDIN-EIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALA 402 (550)
T ss_dssp HCCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTG
T ss_pred hcCcc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccc
Confidence 99999 99999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch--------
Q 040856 240 SIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL-------- 311 (391)
Q Consensus 240 s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~-------- 311 (391)
|+|++++++++++|+ +.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 403 Ssg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~ 481 (550)
T 3m00_A 403 TTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAK 481 (550)
T ss_dssp GGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHH
T ss_pred cchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHH
Confidence 999999999998776 66999999999899999999999999999999999999999999999999999997
Q ss_pred ----HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccC-CCCCCCchhHHHHHHhhccccccC
Q 040856 312 ----IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHG-DGHGVQNQETMDEAFALLFQPIPL 380 (391)
Q Consensus 312 ----ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~-D~~t~~~~~~k~~i~~ll~~pv~~ 380 (391)
|+++||+||+| ++++ + ++|++|+++++|++|+++++|++| ||||.|+.+||++|++||++|||+
T Consensus 482 i~~~Ie~~wK~lN~e--~l~~--~-~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 482 FQNMAETAWKDINEG--LLRP--T-PVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHH--TSSS--C-SSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHH--HhcC--C-CCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 99999999999 9987 7 899999999999999999999998 999998778999999999999985
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.7e-110 Score=870.72 Aligned_cols=373 Identities=43% Similarity=0.804 Sum_probs=362.6
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhcHH
Q 040856 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQE 80 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 80 (391)
||||++||++||++++.+.+.+++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 158 L~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 237 (543)
T 2ong_A 158 LESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQE 237 (543)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHH
Confidence 79999999999999986324358899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh
Q 040856 81 ELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER 160 (391)
Q Consensus 81 El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r 160 (391)
||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|++++||+||+|||++|++.||+||+|
T Consensus 238 El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~r 317 (543)
T 2ong_A 238 ELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRR 317 (543)
T ss_dssp HHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 99999999999999877999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcccc
Q 040856 161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240 (391)
Q Consensus 161 Wd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s 240 (391)
||++ +++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.+|
T Consensus 318 WD~~-~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 396 (543)
T 2ong_A 318 WDIN-SIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQS 396 (543)
T ss_dssp TCSS-TTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch---------
Q 040856 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL--------- 311 (391)
Q Consensus 241 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~--------- 311 (391)
+|++++++++++++|+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 397 ~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i 476 (543)
T 2ong_A 397 ISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHV 476 (543)
T ss_dssp TCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ---HHHHHHHHHhhhhh-ccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhcccccc
Q 040856 312 ---IRQMWKKVMMDVSR-ASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIP 379 (391)
Q Consensus 312 ---ie~~wK~ln~e~~~-~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pv~ 379 (391)
|+++||+||++ + +++ + ++|++|+++++|++|+++++|++|||||.|+.+||++|++||++|||
T Consensus 477 ~~~ie~~wk~ln~e--~~l~~--~-~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 477 KWLIAEVWKKMNAE--RVSKD--S-PFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHH--HTCSS--C-SSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHH--hccCC--C-CCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999 9 987 6 79999999999999999999999999999877899999999999996
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=3e-110 Score=868.59 Aligned_cols=373 Identities=46% Similarity=0.811 Sum_probs=348.9
Q ss_pred ChhHHHHHHHHHHHHhhCC--CCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhc
Q 040856 1 MEEAWQFTSKHLKQCLNSN--KDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATY 78 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~--~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h 78 (391)
||||++||++||++++.+. +.+++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++|
T Consensus 162 L~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h 241 (549)
T 1n1b_A 162 LELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATH 241 (549)
T ss_dssp HHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHH
Confidence 6999999999999998531 43588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHh
Q 040856 79 QEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAV 158 (391)
Q Consensus 79 q~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai 158 (391)
|+||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|++++||+||+|||++|++.||+||
T Consensus 242 q~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai 321 (549)
T 1n1b_A 242 QQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTF 321 (549)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999997779999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcc
Q 040856 159 ERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAA 238 (391)
Q Consensus 159 ~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~ 238 (391)
+|||++ +++++|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||++|.
T Consensus 322 ~rWD~~-~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~ 400 (549)
T 1n1b_A 322 KRWDTE-SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAK 400 (549)
T ss_dssp HHTCSS-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HhcCcc-ccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhcCCCCchHH-HhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch------
Q 040856 239 LSIAGPLITITAYLSATDPIVEKE-LEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL------ 311 (391)
Q Consensus 239 ~s~g~~~~~~~~~~~~g~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~------ 311 (391)
+|+|++++++++++++|+.+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 401 vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~ 480 (549)
T 1n1b_A 401 ISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAV 480 (549)
T ss_dssp HHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHH
T ss_pred cchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999999 9999899999999999999999999999999999999999999999997
Q ss_pred ------HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhhcccccc
Q 040856 312 ------IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFALLFQPIP 379 (391)
Q Consensus 312 ------ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~ll~~pv~ 379 (391)
|+++||++|++ ++++ + ++|++|+++++|++|+++++|++|||||.|+.+||++|++||++|||
T Consensus 481 ~~i~~~i~~~wk~ln~e--~l~~--~-~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 481 EHVKFLIREAWKDMNTA--IAAG--Y-PFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTC--C-SSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHH--HhcC--C-CCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999 9997 7 89999999999999999999999999999877899999999999996
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3.8e-109 Score=884.23 Aligned_cols=374 Identities=31% Similarity=0.566 Sum_probs=349.7
Q ss_pred ChhHHHHHHHHHHHHhh-CCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhcccc------------ccHHHHHHH
Q 040856 1 MEEAWQFTSKHLKQCLN-SNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD------------KNHALLELA 67 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~-~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~lLelA 67 (391)
||||++||++||++++. ++..+++|++||+|||++|||+++||||||+||++|++++. +|++|||||
T Consensus 359 LdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelA 438 (764)
T 3p5p_A 359 MDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELA 438 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHH
Confidence 79999999999999884 23335889999999999999999999999999999998865 599999999
Q ss_pred hhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCC
Q 040856 68 KLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGT 147 (391)
Q Consensus 68 kldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt 147 (391)
|||||+||++||+||++++|||+++|+ .++||+|||++|||||++| |||+||.+|++|||+++|++++||+||+|||
T Consensus 439 KlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT 515 (764)
T 3p5p_A 439 KLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFAT 515 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 999999999999999999999999999 7999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 040856 148 LDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYA 227 (391)
Q Consensus 148 ~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~i 227 (391)
+||++.||+||+|||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+.+||+
T Consensus 516 ~eEl~~ft~ai~RWD~~-~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyv 594 (764)
T 3p5p_A 516 LDELKSFTEGVKRWDTS-LLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYI 594 (764)
T ss_dssp HHHHHHHHHHHHHTSST-TGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHh
Q 040856 228 PTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMH 307 (391)
Q Consensus 228 Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~ 307 (391)
||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|+|||+
T Consensus 595 PT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMk 674 (764)
T 3p5p_A 595 PTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMK 674 (764)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHH
T ss_pred CCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHH
Confidence 99999999999999999998899999999999999999876699999999999999999999999999999999999999
Q ss_pred hc-ch------------HHHHHHHHHhhhhhcc-CCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHhh
Q 040856 308 ET-NL------------IRQMWKKVMMDVSRAS-NNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETMDEAFAL 373 (391)
Q Consensus 308 e~-g~------------ie~~wK~ln~e~~~~~-~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~l 373 (391)
|+ |+ |+++||+||++ +++ + + ++|++|+++++|++|+++++|+++||||.|+.+||++|++|
T Consensus 675 e~~gvSeEeA~~~i~~~Ie~~wKeln~e--~l~~~--~-~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~l 749 (764)
T 3p5p_A 675 DNPGATEEDAIKHICRVVDRALKEASFE--YFKPS--N-DIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKV 749 (764)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHH--HHSCC--S-SSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHH--HhhCC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Confidence 99 55 99999999999 997 4 5 89999999999999999999999999999876799999999
Q ss_pred ccccccCCCC
Q 040856 374 LFQPIPLEDN 383 (391)
Q Consensus 374 l~~pv~~~~~ 383 (391)
|++||++-..
T Consensus 750 l~~Pi~~~~~ 759 (764)
T 3p5p_A 750 YIDPIQVGSH 759 (764)
T ss_dssp HTCCCCC---
T ss_pred HhcCCccCcc
Confidence 9999998543
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=3.1e-109 Score=890.19 Aligned_cols=373 Identities=35% Similarity=0.630 Sum_probs=350.6
Q ss_pred ChhHHHHHHHHHHHHhhC-C-C----CCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhcccc------------ccHH
Q 040856 1 MEEAWQFTSKHLKQCLNS-N-K----DDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD------------KNHA 62 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~-~-~----~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~ 62 (391)
||||++||++||++++.+ . + .+++|++||+|||++|||+++||||||+||++|++++. +|++
T Consensus 411 LdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~ 490 (817)
T 3sdr_A 411 LDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEK 490 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHH
Confidence 799999999999998742 1 1 13679999999999999999999999999999998875 5999
Q ss_pred HHHHHhhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhh
Q 040856 63 LLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIY 142 (391)
Q Consensus 63 lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~ 142 (391)
||||||||||+||++||+||++++|||+++|+ .++||+|||++|||||++|++|||+||.+|++|||+++|++++||+|
T Consensus 491 lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~y 569 (817)
T 3sdr_A 491 FLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMY 569 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHh
Q 040856 143 DIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWY 222 (391)
Q Consensus 143 D~~gt~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~ 222 (391)
|+|||+||++.||+||+|||++ ++++||+|||+||.+|+++++|++.++.++||+++++|++++|++++++|++||+|+
T Consensus 570 D~ygT~eEl~~ft~ai~RWD~~-~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~ 648 (817)
T 3sdr_A 570 DTYGTLDELKLFTEAVRRWDLS-FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWL 648 (817)
T ss_dssp HTTSCHHHHHHHHHHHHHTCGG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHcCch-hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChHHHHhhccccchhhH-HHHHHHhhcCCCCchHHHhhhc--cChHHHHHHHHHHHHhcCCCCChhhhhcCCCc
Q 040856 223 HNKYAPTLEEYLKNAALSIAGPL-ITITAYLSATDPIVEKELEYLE--SNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVS 299 (391)
Q Consensus 223 ~~~~iPs~eEYl~~~~~s~g~~~-~~~~~~~~~g~~l~~e~~e~~~--~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~ 299 (391)
.+||+||+||||+||.+|+|+++ +++++++++|+.+|+++++|+. ++|+|+++++.|+||+|||+||++|+++|+++
T Consensus 649 ~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~a 728 (817)
T 3sdr_A 649 AAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELA 728 (817)
T ss_dssp HTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CC
T ss_pred hcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcc
Confidence 99999999999999999999998 8888888899999999999976 45699999999999999999999999999999
Q ss_pred chHHHHHhhc-ch------------HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhH
Q 040856 300 KSIQCYMHET-NL------------IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQET 366 (391)
Q Consensus 300 n~V~~yM~e~-g~------------ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~ 366 (391)
|+|+|||+|| |+ |+++||+||+| ++++ + ++|++|+++++|++|+++++|++|||||.|+.+|
T Consensus 729 ssV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e--~l~~--~-~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~ 803 (817)
T 3sdr_A 729 SSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE--FLKP--D-DVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEV 803 (817)
T ss_dssp CHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHH--HHSC--C-SSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHH
T ss_pred hHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhCC--C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHH
Confidence 9999999999 55 99999999999 9987 7 8999999999999999999999999999987789
Q ss_pred HHHHHhhccccccC
Q 040856 367 MDEAFALLFQPIPL 380 (391)
Q Consensus 367 k~~i~~ll~~pv~~ 380 (391)
|++|++||++|||+
T Consensus 804 k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 804 KDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999999985
No 8
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.5e-109 Score=865.88 Aligned_cols=371 Identities=44% Similarity=0.786 Sum_probs=341.1
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhccccccHHHHHHHhhhhHHHhhhcHH
Q 040856 1 MEEAWQFTSKHLKQCLNSNKDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKDKNHALLELAKLDFNILQATYQE 80 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~~~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 80 (391)
||||++||++||++++. .+.+++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 186 LdeA~~Ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 264 (569)
T 2j5c_A 186 LRLARDFATKFLQKRVL-VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQ 264 (569)
T ss_dssp HHHHHHHHHHTTSSCC-----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHH
Confidence 79999999999999885 34358899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh
Q 040856 81 ELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER 160 (391)
Q Consensus 81 El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r 160 (391)
||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|++++||+||+|||++|++.||+||+|
T Consensus 265 EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~r 344 (569)
T 2j5c_A 265 ELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQR 344 (569)
T ss_dssp HHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99999999999999877999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhcccc
Q 040856 161 WDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALS 240 (391)
Q Consensus 161 Wd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s 240 (391)
||++ +++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+.+||+||+||||+||.+|
T Consensus 345 WD~~-~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 423 (569)
T 2j5c_A 345 WDIE-SMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWIS 423 (569)
T ss_dssp TSSG-GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcc-ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcch---------
Q 040856 241 IAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETNL--------- 311 (391)
Q Consensus 241 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~--------- 311 (391)
+|++++++++++++|+.+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+
T Consensus 424 sg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i 503 (569)
T 2j5c_A 424 IGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHV 503 (569)
T ss_dssp TSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ---HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccC-CCCCCCchhHHHHHHhhcccccc
Q 040856 312 ---IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHG-DGHGVQNQETMDEAFALLFQPIP 379 (391)
Q Consensus 312 ---ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~-D~~t~~~~~~k~~i~~ll~~pv~ 379 (391)
|+++||+||++ +++. +||++|+++++|++|+++++|+++ ||||.|+.+||++|++||++|||
T Consensus 504 ~~~ie~~wk~ln~e--~l~~----~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 504 RSLIDQTWKMMNKE--MMTS----SFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHH--HHHC----CSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHH--Hhcc----CCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999 9973 699999999999999999999999 99999877899999999999996
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=7.2e-109 Score=884.24 Aligned_cols=370 Identities=34% Similarity=0.620 Sum_probs=351.8
Q ss_pred ChhHHHHHHHHHHHHhhC-C-----CCCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhcccc------------ccHH
Q 040856 1 MEEAWQFTSKHLKQCLNS-N-----KDDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD------------KNHA 62 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~~-~-----~~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~------------~n~~ 62 (391)
||||++||++||++++.+ . ..+++|++||+|||++|||+++||||||+||++|++++. +|++
T Consensus 383 LdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~ 462 (785)
T 3s9v_A 383 MEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEK 462 (785)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHH
Confidence 799999999999998732 1 235889999999999999999999999999999998875 4999
Q ss_pred HHHHHhhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhhh
Q 040856 63 LLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDIY 142 (391)
Q Consensus 63 lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~~ 142 (391)
||||||||||+||++||+||++++|||+++|+ .++||+|||++|||||++|++|||+||.+|++|||+++|++++||+|
T Consensus 463 lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~y 541 (785)
T 3s9v_A 463 YLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLY 541 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 79999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHh
Q 040856 143 DIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWY 222 (391)
Q Consensus 143 D~~gt~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~ 222 (391)
|+|||+|||+.||+||+|||++ ++++||+|||+||.+|+++++|++.++.+++|+++++|++++|++++++|++||+|+
T Consensus 542 D~ygT~eEl~~ft~ai~RWD~~-~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~ 620 (785)
T 3s9v_A 542 DAHGSLDDLKLFTESVKRWDLS-LVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWS 620 (785)
T ss_dssp TSCCCHHHHHHHHHHHHHTSSS-SGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHcCch-hhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchH
Q 040856 223 HNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSI 302 (391)
Q Consensus 223 ~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V 302 (391)
.+||+||+||||+||.+|+|++++++.+++++|+.+|+++++|+..+|+++++++.|+||+|||+||++|+++|+++|+|
T Consensus 621 ~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V 700 (785)
T 3s9v_A 621 EAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAI 700 (785)
T ss_dssp HTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH
T ss_pred hcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHH
Confidence 99999999999999999999999999999999999999999997766999999999999999999999999999999999
Q ss_pred HHHHhhc-ch------------HHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCch-hHHH
Q 040856 303 QCYMHET-NL------------IRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQ-ETMD 368 (391)
Q Consensus 303 ~~yM~e~-g~------------ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~-~~k~ 368 (391)
+|||+|| |+ |+++||+||+| ++++ + +|++|+++++|++|+++++|+++||||.|+. +||+
T Consensus 701 ~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e--~l~~--~--~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~ 774 (785)
T 3s9v_A 701 QCYMKDHPKISEEEALQHVYSVMENALEELNRE--FVNN--K--IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKE 774 (785)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH--HHHS--C--CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhcC--C--CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Confidence 9999999 65 99999999999 9986 4 9999999999999999999999999999865 6999
Q ss_pred HHHhhccccc
Q 040856 369 EAFALLFQPI 378 (391)
Q Consensus 369 ~i~~ll~~pv 378 (391)
+|++||++||
T Consensus 775 ~i~~ll~~Pi 784 (785)
T 3s9v_A 775 HVKNCLFQPV 784 (785)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHhcccC
Confidence 9999999998
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.8e-77 Score=634.18 Aligned_cols=331 Identities=18% Similarity=0.240 Sum_probs=276.9
Q ss_pred ChhHHHHHHHHHHHHhh-CCC-----CCccHHHHHHHHcCCCcCCCCchHHHHhhHHHhhcccc-------------ccH
Q 040856 1 MEEAWQFTSKHLKQCLN-SNK-----DDEDLNEQARRALELPLHWRMPRLEARWFINVYEKRKD-------------KNH 61 (391)
Q Consensus 1 L~eA~~ft~~~L~~~~~-~~~-----~~~~l~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~-------------~n~ 61 (391)
||||++||++||++.+. +.+ .+++|++||+|||++|||+++||||||+||++|+++++ +|+
T Consensus 357 LdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~ 436 (727)
T 3pya_A 357 LKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNN 436 (727)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccH
Confidence 69999999999999873 222 14789999999999999999999999999999997664 699
Q ss_pred HHHHHHhhhhHHHhhhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHHHHHHHHHHHHHhhhh
Q 040856 62 ALLELAKLDFNILQATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRRVLTITLALITVIDDI 141 (391)
Q Consensus 62 ~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~ 141 (391)
+||||||||||+||++||+||++++||||++|| .++||+|||++|||||++|++|||+||.+|++|||++++++++||+
T Consensus 437 ~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~ 515 (727)
T 3pya_A 437 GYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSS 515 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6799999999999999999999999999999999999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcchh--------hhhhc---CChh--HHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 040856 142 YDIYGTLDELELFTNAVERWDIN--------FAIKQ---LPDY--MKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSW 208 (391)
Q Consensus 142 ~D~~gt~eel~~~~~ai~rWd~~--------~~~~~---lp~~--mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w 208 (391)
||+|| |||+.||+||+|||.+ .+.+. .|+| ||+||.+|+++++|++.++.+.||+++++|++++|
T Consensus 516 yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W 593 (727)
T 3pya_A 516 FGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSW 593 (727)
T ss_dssp HCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred Hhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 99999 9999999999999973 02222 3877 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHHHHhhc-CCCCchHHHhhhccChHHHHHHHHHHHHhcCCC
Q 040856 209 LGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYLSA-TDPIVEKELEYLESNPDVIQWSSRIFRLLDDLG 287 (391)
Q Consensus 209 ~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~ 287 (391)
.++++++++||+ + +| |. +++..+.++ |..+++ ++.. .++..|.++++.||||+||+.
T Consensus 594 ~~~l~s~~~Ea~-~--------~E---------Ae--llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~ 651 (727)
T 3pya_A 594 GDWMEKWKLYGD-E--------GE---------GE--LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLK 651 (727)
T ss_dssp HHHHHHHHHHSS-C--------CH---------HH--HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC---
T ss_pred HHHHHHHHHhcc-c--------cc---------ee--eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHH
Confidence 999999999998 2 33 22 333333333 666777 6433 334559999999999999999
Q ss_pred CChhhhhcCCCcchHHHHHhhcchHHHHHHHHHhhhhhccCCCCCCCcHhHHHHHHHHhhhhhhhcccCCCCCCCchhHH
Q 040856 288 TSSDEIQRGDVSKSIQCYMHETNLIRQMWKKVMMDVSRASNNKDSPLSQITNEFILNLVRVSHFMYLHGDGHGVQNQETM 367 (391)
Q Consensus 288 S~~~E~~~G~~~n~V~~yM~e~g~ie~~wK~ln~e~~~~~~~~~~~vp~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k 367 (391)
+|++|+ +.. + ...||..|++|++. ++++. ++.||++| |+++|++.||.. ||++| + |+
T Consensus 652 ~~~~E~--------~~~-~--~~~IE~~mqEL~~l--Vl~~~-~~~ip~~~-----tf~~V~ksFYy~--ay~~p-~-i~ 708 (727)
T 3pya_A 652 ARRNDE--------KEK-T--IKSMEKEMGKMVEL--ALSES-DTFRDVSI-----TFLDVAKAFYYF--ALCGD-H-LQ 708 (727)
T ss_dssp ---CHH--------HHH-H--HHHHHHHHHHHHHH--HHSCC-TTTHHHHH-----HHHHHHHHHHHH--HHHTT-S-CH
T ss_pred HHHHHH--------HHH-H--HHHHHHHHHHHHHH--HhccC-CCCCCCcc-----cHHHHHHHHHhh--hcCCH-H-HH
Confidence 999988 111 1 13399999999999 99861 22799999 778888888875 99987 4 99
Q ss_pred HHHHhhcccccc
Q 040856 368 DEAFALLFQPIP 379 (391)
Q Consensus 368 ~~i~~ll~~pv~ 379 (391)
.||.+||++||-
T Consensus 709 ~hI~kVl~~~~~ 720 (727)
T 3pya_A 709 THISKVLFQKVG 720 (727)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHcCccc
Confidence 999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=5.2e-49 Score=386.92 Aligned_cols=242 Identities=14% Similarity=0.117 Sum_probs=215.4
Q ss_pred hHHHhhhcHHHHHHHHH-HHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHH-HHHHHHHHHHHhhhhhccc--C
Q 040856 71 FNILQATYQEELKDISG-WWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRR-VLTITLALITVIDDIYDIY--G 146 (391)
Q Consensus 71 Fn~~Q~~hq~El~~l~r-W~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~~iDD~~D~~--g 146 (391)
|..-+..|.+|++..+. ||+++|+.+ .+|+|+|++++|||.+|++|+|+++.+|+ ++||+++|+|++||+||.+ |
T Consensus 11 ~p~~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~ 89 (337)
T 1ps1_A 11 LPGRQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGE 89 (337)
T ss_dssp SCCCCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCC
Confidence 44446788999977665 999999954 58999999999999999999999999999 9999999999999999988 6
Q ss_pred CHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 040856 147 TLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKY 226 (391)
Q Consensus 147 t~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~ 226 (391)
|++|++.|++++.+|+.+ .+|+++++++.++.+++++++.. .++...++++++|.++++++++||+|+.+|+
T Consensus 90 ~~ee~~~~~~~l~~~~~~----~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~ 161 (337)
T 1ps1_A 90 NPEDTKQLTDQVAAALDG----PLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNA 161 (337)
T ss_dssp CHHHHHHHHHHHHGGGTS----CCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHHcCC----CCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999875 47999999999999999988654 5667789999999999999999999999999
Q ss_pred CC-ChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHH
Q 040856 227 AP-TLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCY 305 (391)
Q Consensus 227 iP-s~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~y 305 (391)
+| |++||+++|++|+|++++++++++++|..+|+++++. ...+++.++++.++||+|||+||++|+++|+++|+|.||
T Consensus 162 ~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~ 240 (337)
T 1ps1_A 162 PCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMIL 240 (337)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHH
T ss_pred CCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHH
Confidence 99 9999999999999999999999999999999988655 334589999999999999999999999999999999999
Q ss_pred Hhhcch------------HHHHHHHHHhh
Q 040856 306 MHETNL------------IRQMWKKVMMD 322 (391)
Q Consensus 306 M~e~g~------------ie~~wK~ln~e 322 (391)
|+++|+ ++++||++|++
T Consensus 241 m~~~g~s~eeA~~~v~~~i~~~~~~~~~~ 269 (337)
T 1ps1_A 241 RREHGWSKSRSVSHMQNEVRARLEQYLLL 269 (337)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 88899999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1e-46 Score=364.48 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=209.7
Q ss_pred hhcHHHHHHHHH-HHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHH-HHHHHHHHHHHhhhhhcccCCHHHHHH
Q 040856 76 ATYQEELKDISG-WWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRR-VLTITLALITVIDDIYDIYGTLDELEL 153 (391)
Q Consensus 76 ~~hq~El~~l~r-W~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~~iDD~~D~~gt~eel~~ 153 (391)
..|.+|++..++ ||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. ||.+|++.
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 578999998777 77999995 569999999999999988899999999999 999999999999999999 88999999
Q ss_pred HHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHH
Q 040856 154 FTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEY 233 (391)
Q Consensus 154 ~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEY 233 (391)
|++++.||+.+ +.+|++|++++.++++++++++.... .+.++.|+.++++++ ||+|+..|++||++||
T Consensus 90 ~~~~~~~~~~~---~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeY 157 (300)
T 1di1_A 90 YNNRLIPISRG---DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHY 157 (300)
T ss_dssp HHHHHHHHHHT---SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHH
T ss_pred HHHHHHHHccC---CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHH
Confidence 99999999875 46899999999999999999987662 356777999999997 8999999999999999
Q ss_pred HhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCC--------CcchHHHH
Q 040856 234 LKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGD--------VSKSIQCY 305 (391)
Q Consensus 234 l~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~~y 305 (391)
+++|++|+|++++++++++++|..+|+++++ ..++++++++.++||+|||+||++|+++|+ ++|+|.||
T Consensus 158 l~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~ 234 (300)
T 1di1_A 158 LEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVL 234 (300)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHH
T ss_pred HHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHH
Confidence 9999999999999999999999999999998 369999999999999999999999999998 77999999
Q ss_pred Hhhcch------------HHHHHHHHHhh
Q 040856 306 MHETNL------------IRQMWKKVMMD 322 (391)
Q Consensus 306 M~e~g~------------ie~~wK~ln~e 322 (391)
|+++|+ +++.||++|+.
T Consensus 235 m~~~g~s~eeA~~~~~~~i~~~~~~~~~~ 263 (300)
T 1di1_A 235 AEESKLGIPATKRVLWSMTREWETVHDEI 263 (300)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 77778887766
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=1.7e-45 Score=359.37 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=204.2
Q ss_pred hhHHHhhhcHHHHHHHHH-HHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHH-HHHHHHHHHHHhhhhhcccCC
Q 040856 70 DFNILQATYQEELKDISG-WWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRR-VLTITLALITVIDDIYDIYGT 147 (391)
Q Consensus 70 dFn~~Q~~hq~El~~l~r-W~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~~iDD~~D~~gt 147 (391)
.|..-..+|.+|++..+. ||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. ||
T Consensus 20 p~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~ 97 (320)
T 3bny_A 20 TFQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MS 97 (320)
T ss_dssp SCCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CC
Confidence 455566789999998877 7799999655 9999999999999988889999999999 999999999999999999 89
Q ss_pred HHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 040856 148 LDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYA 227 (391)
Q Consensus 148 ~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~i 227 (391)
.+|++.|++++.+|+.+ +.+|++|++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++
T Consensus 98 ~~e~~~~~~~l~~~~~~---~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~ 165 (320)
T 3bny_A 98 FEEGSAYNEKLIPISRG---DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARP 165 (320)
T ss_dssp HHHHHHHHHHHHHHHHT---SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCC
T ss_pred hhhHHHHHHHHHHHhcC---CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCC
Confidence 99999999999999875 4689999999999999999998765 2 25566677777 59999999999999
Q ss_pred CChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCC--------Cc
Q 040856 228 PTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGD--------VS 299 (391)
Q Consensus 228 Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~--------~~ 299 (391)
||++||+++|++|+|++++++++++++|..+|+++++. .++++++++.++||+|||+||++|+++|+ ++
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~ 242 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILC 242 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CC
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999999983 79999999999999999999999999998 78
Q ss_pred chHHHHHhhcch-HHHHH
Q 040856 300 KSIQCYMHETNL-IRQMW 316 (391)
Q Consensus 300 n~V~~yM~e~g~-ie~~w 316 (391)
|+|.|||+++|+ .++|.
T Consensus 243 N~V~~~m~~~g~s~eeA~ 260 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAK 260 (320)
T ss_dssp SHHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHcCCCHHHHH
Confidence 999999999997 44443
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=7.2e-43 Score=349.67 Aligned_cols=239 Identities=13% Similarity=0.031 Sum_probs=210.8
Q ss_pred hhcHHHHHH-HHHHHhhcCCCccCcchhhhhhHhhhhhhccccCCCchhHHH-HHHHHHHHHHHhhhhhcc--cC-CHHH
Q 040856 76 ATYQEELKD-ISGWWKDKGLGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRR-VLTITLALITVIDDIYDI--YG-TLDE 150 (391)
Q Consensus 76 ~~hq~El~~-l~rW~~~~~l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~~iDD~~D~--~g-t~ee 150 (391)
..|-++++. +.+||+++|+. .-+++|+|+++++||.++++++|+++.+|| ++||+++|+|++||+||. +| ++++
T Consensus 56 nP~~~~v~~~~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~ 134 (382)
T 3kb9_A 56 HPYWPKLQETTRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGA 134 (382)
T ss_dssp CTTHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHH
Confidence 344455543 45699999995 337899999999999999999999999999 999999999999999996 66 9999
Q ss_pred HHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCCh
Q 040856 151 LELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTL 230 (391)
Q Consensus 151 l~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~ 230 (391)
++.|++++.++- + ....+|+++++++.++.+++++++..+ ++....+++++|++++++|++||+|+.+|++||+
T Consensus 135 ~~~~~~~l~~~l-~-~~~~~p~~~~p~~~al~dl~~~~~~~~----~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~ 208 (382)
T 3kb9_A 135 WRRLRGLLHTAL-D-SPGDHLHHEDTLVAGFADSVRRLYAFL----PATWNARFARHFHTVIEAYDREFHNRTRGIVPGV 208 (382)
T ss_dssp HHHHHHHHHHHH-H-SCGGGTTCSSHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHh-c-CCCCCCCCCChHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 999999999851 1 223368899999999999999886443 3445789999999999999999999999999999
Q ss_pred HHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcCCCcchHHHHHhhcc
Q 040856 231 EEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRGDVSKSIQCYMHETN 310 (391)
Q Consensus 231 eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yM~e~g 310 (391)
+||+++|++|+|++++++++++++|..+|++++++ ...++++++++.++||+|||+||++|+++|+++|+|.|||+++|
T Consensus 209 eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g 287 (382)
T 3kb9_A 209 EEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHS 287 (382)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSC
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCC
Confidence 99999999999999999999999999999999777 45677999999999999999999999999999999999999999
Q ss_pred h------------HHHHHHHHHhh
Q 040856 311 L------------IRQMWKKVMMD 322 (391)
Q Consensus 311 ~------------ie~~wK~ln~e 322 (391)
+ |++.||++|+.
T Consensus 288 ~s~eeA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 288 LTLEEAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 88888888865
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.96 E-value=1.1e-29 Score=257.10 Aligned_cols=238 Identities=13% Similarity=0.038 Sum_probs=171.2
Q ss_pred hhcHHHHHHHH-HHHhhcCCCccCcchhhhhhHhhh-hhhccccCCCc-hhHHH-HHHHHHHHHHHhhhhh-cccC-CHH
Q 040856 76 ATYQEELKDIS-GWWKDKGLGEKLSFARSRLVTSFF-WGMGMVFEPQF-AYSRR-VLTITLALITVIDDIY-DIYG-TLD 149 (391)
Q Consensus 76 ~~hq~El~~l~-rW~~~~~l~~~l~faRdr~~e~yf-~~~a~~feP~~-s~~Rl-~~aK~~~l~~~iDD~~-D~~g-t~e 149 (391)
..|-+|++.-. .|..++++... +-.|+++..+.| ..+|.+| |.. +.+|| +.+|++.|+|++||+| |..| +.+
T Consensus 125 nP~~~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~ 202 (433)
T 3v1v_A 125 PVRVEEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPV 202 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCT
T ss_pred CcCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 45566776444 49999876433 336889999998 4445555 999 89999 9999999999999995 9754 332
Q ss_pred H-HHHHHH---Hhhhcchh-h--hhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHh
Q 040856 150 E-LELFTN---AVERWDIN-F--AIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWY 222 (391)
Q Consensus 150 e-l~~~~~---ai~rWd~~-~--~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~ 222 (391)
. ...+.. ++...... . .....|..-..+..+++++++++...+ ++....+++++|++++++|++||+|+
T Consensus 203 ~~~~~l~~a~~~~d~l~~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a----~~~q~~r~~~~~~~~~~a~l~EA~W~ 278 (433)
T 3v1v_A 203 GLGGRLLLAHTAIDHFHSTAEYTPTWQASLAADAPRRAYDSAMGYFVRAA----TPSQSDRYRHDMARLHLGYLAEGAWA 278 (433)
T ss_dssp THHHHHHHHHTTTSCCCCCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhcccCCCCccccccCCchHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 112222 23221110 0 000000001245788899999886553 44457899999999999999999999
Q ss_pred hCCCCCChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhcC-CCcch
Q 040856 223 HNKYAPTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQRG-DVSKS 301 (391)
Q Consensus 223 ~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~ 301 (391)
..|++||++|||++|++| |+.+++..+.+++|..+|++++++ ....+|.++++.++||+|||+||+||+++| +++|+
T Consensus 279 ~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~ 356 (433)
T 3v1v_A 279 QTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNL 356 (433)
T ss_dssp HHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCH
T ss_pred hcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcH
Confidence 999999999999999999 555555556777899999999766 335568999999999999999999999995 78899
Q ss_pred HHHHHhhcch-HHHHHHHHHh
Q 040856 302 IQCYMHETNL-IRQMWKKVMM 321 (391)
Q Consensus 302 V~~yM~e~g~-ie~~wK~ln~ 321 (391)
|.|||+++|+ .++|.+.+++
T Consensus 357 V~~~mke~g~S~eeA~~~v~~ 377 (433)
T 3v1v_A 357 PVVIAEREQLCERDAYLKAVE 377 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHH
Confidence 9999999988 6666554443
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.64 E-value=5e-16 Score=154.18 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhhcC------------CCccCcchhhhhhHhhhhhhccccCCCchhHHH-HHHHHHHHHHHhhhhhcccC
Q 040856 80 EELKDISGWWKDKG------------LGEKLSFARSRLVTSFFWGMGMVFEPQFAYSRR-VLTITLALITVIDDIYDIYG 146 (391)
Q Consensus 80 ~El~~l~rW~~~~~------------l~~~l~faRdr~~e~yf~~~a~~feP~~s~~Rl-~~aK~~~l~~~iDD~~D~~g 146 (391)
+|-.+..+|..+.| +. .-+-..++++..-.|.++..| |..+.+.+ .++++++|+|++||.+|..+
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~ 107 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY 107 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH
T ss_pred HHHHHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH
Confidence 44445558998888 42 112245777788888777777 99999999 99999999999999998653
Q ss_pred CHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 040856 147 TLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSWLGLLQAFLVEAKWYHNKY 226 (391)
Q Consensus 147 t~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~ 226 (391)
+++..|.+.+-+ +. .. + .++..++.+.+. ++...-++.+..++.++|.+++.++++|+.. .+.
T Consensus 108 --~~l~~~~~~ll~--G~--~~--~---~Pl~~al~dl~~----rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~ 170 (374)
T 1yyq_A 108 --PTMVNYFDDLQA--GR--EQ--A---HPWWALVNEHFP----NVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGG 170 (374)
T ss_dssp --HHHTTHHHHHHH--TC--CC--S---SHHHHHHHHHHH----HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCC
T ss_pred --HHHHHHHHHHhc--CC--CC--C---ChHHHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCC
Confidence 666767766554 22 11 1 144455554444 4555567788889999999999999999873 777
Q ss_pred CCChHHHHhhccccchhhHHHHHHHhhcCCCCchHHHhhhccChHHHHHHHHHHHHhcCCCCChhhhhc-CCCcchHHHH
Q 040856 227 APTLEEYLKNAALSIAGPLITITAYLSATDPIVEKELEYLESNPDVIQWSSRIFRLLDDLGTSSDEIQR-GDVSKSIQCY 305 (391)
Q Consensus 227 iPs~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDi~S~~~E~~~-G~~~n~V~~y 305 (391)
.|+.++|...++.++|......... .+..+.++.... ..+..++.....++.|+|||.||.||... |+.+|.|..+
T Consensus 171 ~p~~~~Y~~~rR~~sG~~E~~~~~~--~P~~~~~e~~~~-~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl 247 (374)
T 1yyq_A 171 FPGSHDYPQFLRRMNGLGHCVGASL--WPKEQFNERSLF-LEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNY 247 (374)
T ss_dssp CTTCTTHHHHHHHHHHCHHHHHHTT--CCTTTCCTTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHhhccHHHHHHHhh--ccccccchhhcc-hhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhe
Confidence 8999999999899998754433211 222222222111 11334666666689999999999999984 9999999999
Q ss_pred Hhhcch
Q 040856 306 MHETNL 311 (391)
Q Consensus 306 M~e~g~ 311 (391)
++++|+
T Consensus 248 ~~~~g~ 253 (374)
T 1yyq_A 248 VVSDEI 253 (374)
T ss_dssp HHHHTC
T ss_pred hhcCCC
Confidence 999988
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=53.35 E-value=1.2e+02 Score=27.78 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhcccCCHHHHHHHHHHhhh-cchhhhh--hcCChhHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 040856 123 YSRRVLTITLALITVIDDIYDIYGTLDELELFTNAVER-WDINFAI--KQLPDYMKICFFALYNFVSEVAYDILKQQDSD 199 (391)
Q Consensus 123 ~~Rl~~aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~r-Wd~~~~~--~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~ 199 (391)
..|-.+.-+-.+.-.+||+=|......+|+.+-+.+++ .++. .. ...|+ .++..+|.+++.+. +
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~-~~~~~~~~~--~pv~~al~~~~~~~--------~-- 104 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP-YEYHHFQSD--RRIMMALQHVAQHK--------N-- 104 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCT-TSCCCCSSC--HHHHHHHHHHHHHS--------C--
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCC-CcccCCCCC--CHHHHHHHHHHHHh--------C--
Confidence 34555555777888899999975544446666665554 1111 00 00022 36777777766553 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHHHHh
Q 040856 200 QLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYL 252 (391)
Q Consensus 200 ~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~ 252 (391)
--++.+.+++.++-+ +......+|++|+......+.|.--.+++-.+
T Consensus 105 ---l~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~ 151 (293)
T 3acx_A 105 ---IAFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPIL 151 (293)
T ss_dssp ---CCHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh
Confidence 112445666666653 33355678999998888888775444433343
No 18
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.04 E-value=2e+02 Score=23.25 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=36.5
Q ss_pred hhcHHHHHHHHHHHhhcCCCccCcchhhhhhHhhhhh--hccccCCC------chhHHHHHHHHHHHHHHhhhhh
Q 040856 76 ATYQEELKDISGWWKDKGLGEKLSFARSRLVTSFFWG--MGMVFEPQ------FAYSRRVLTITLALITVIDDIY 142 (391)
Q Consensus 76 ~~hq~El~~l~rW~~~~~l~~~l~faRdr~~e~yf~~--~a~~feP~------~s~~Rl~~aK~~~l~~~iDD~~ 142 (391)
.+-.+|++++.+|..+.+|.......|..+...|.-| +..|| |+ |+.+.-.-+|...|-++=--+|
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~~~rn~rRDFSdG~lvAEIl~~y~-Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl 84 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYF-PKMVEMHNYVPANSLQQKLSNWGHLNRKVL 84 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSCCSSCHHHHHTTSHHHHHHHHHHC-TTTCCCSSCCCCSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCchhhhccchhHHHHHHHHHC-cCcccccccCCCCcHHHHHHhHHHHHHHHH
Confidence 4567899999999999998433222344455444422 22233 55 3333334455666655433444
No 19
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.18 E-value=25 Score=19.87 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.5
Q ss_pred HHHHhhHHHhhc
Q 040856 44 LEARWFINVYEK 55 (391)
Q Consensus 44 lear~yI~~Y~~ 55 (391)
+|||.|+++...
T Consensus 7 iearkyleqlhr 18 (26)
T 1xkm_B 7 IEARKYLEQLHR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999988653
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=27.11 E-value=1.3e+02 Score=28.79 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHH--HHhhcCCCCchHHHhhhccChHHHHHH
Q 040856 199 DQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITIT--AYLSATDPIVEKELEYLESNPDVIQWS 276 (391)
Q Consensus 199 ~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~~ 276 (391)
.+...+.+++..++.+-..+..|.... ||+++|++.-..-+|..+..+. .-...| .+++..+.+ -.+-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 566788888999999999999998655 9999999886555554332211 111123 344543432 3455666
Q ss_pred HHHHHHhcCCCCC
Q 040856 277 SRIFRLLDDLGTS 289 (391)
Q Consensus 277 ~~i~RL~NDi~S~ 289 (391)
.+..-+.||+..+
T Consensus 233 G~aFQI~DDilD~ 245 (360)
T 3lmd_A 233 GMIFQIVDDIIDI 245 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666777777555
No 21
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=26.64 E-value=3.7e+02 Score=24.54 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhhhcccC-C-HHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHH
Q 040856 130 ITLALITVIDDIYDIYG-T-LDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNS 207 (391)
Q Consensus 130 K~~~l~~~iDD~~D~~g-t-~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~ 207 (391)
-+-.+.=.+||+=|... . ...|+.+-+.+++ ....-|. .+++.+|.+++++..- -++.
T Consensus 46 alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~-----~~~g~~~--~pv~~al~~~~~~~~l-------------~~~~ 105 (294)
T 4hd1_A 46 SVYAFCRGVDDLGDEFAGDRMAALDAYEEELRR-----AFAGEAT--TPAFRALQFTIATCNL-------------PMEP 105 (294)
T ss_dssp HHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHH-----HHHTCCC--SHHHHHHHHHHHHHTC-------------CSHH
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH-----HhcCCCC--CHHHHHHHHHHHHcCC-------------CHHH
Confidence 35556677899999633 2 3445555555544 1111122 2677788777765411 0233
Q ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHHHHh
Q 040856 208 WLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAYL 252 (391)
Q Consensus 208 w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~~ 252 (391)
+.+++.++.+... ....+|++|+......+.|.--.++.-.+
T Consensus 106 ~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~ 147 (294)
T 4hd1_A 106 FLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF 147 (294)
T ss_dssp HHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh
Confidence 4566667654443 45678998888877777765333333333
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=25.47 E-value=1.4e+02 Score=28.11 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHHHH-hhcCCCCchHHHhhhccChHHHHH
Q 040856 197 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAY-LSATDPIVEKELEYLESNPDVIQW 275 (391)
Q Consensus 197 ~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~-~~~g~~l~~e~~e~~~~~p~l~~~ 275 (391)
...+...+.++...++.+-..+..|.. ...||.++|+..-..-+|..+..+... ..++. .+++..+. .-.+-..
T Consensus 131 ~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~ 205 (334)
T 3rmg_A 131 NYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ-VGEEEVAF---ARLLGEY 205 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCHHHHHH---HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHH
Confidence 345677888889999999999988874 345899999988665555432221111 11222 24444333 2446666
Q ss_pred HHHHHHHhcCCCCChh
Q 040856 276 SSRIFRLLDDLGTSSD 291 (391)
Q Consensus 276 ~~~i~RL~NDi~S~~~ 291 (391)
.+...-+.||+..+..
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 206 IGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCCC
Confidence 7777788888877653
No 23
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=25.37 E-value=1.5e+02 Score=27.94 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCC--CCCChHHHHhhccccchhhHHHHH--HHhhcCCCCchHHHhhhccChHHHHH
Q 040856 200 QLLRIKNSWLGLLQAFLVEAKWYHNK--YAPTLEEYLKNAALSIAGPLITIT--AYLSATDPIVEKELEYLESNPDVIQW 275 (391)
Q Consensus 200 ~~~~l~~~w~~~~~a~~~EA~W~~~~--~iPs~eEYl~~~~~s~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~p~l~~~ 275 (391)
+...+.+....++.+-..+..|.... ..||.++|+..-..-+|..+.++. .-...|. +++. ...-.+-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~----~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHHG----HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHHH----HHHHHHHHH
Confidence 55667778888999999999998765 578999999986655554322211 1111232 2221 224567777
Q ss_pred HHHHHHHhcCCCCCh
Q 040856 276 SSRIFRLLDDLGTSS 290 (391)
Q Consensus 276 ~~~i~RL~NDi~S~~ 290 (391)
.++..-+.||+..+.
T Consensus 206 lG~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888888886654
No 24
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=25.05 E-value=2.7e+02 Score=22.38 Aligned_cols=76 Identities=9% Similarity=0.180 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhhhcccCCHHHHHHHHHHhhhcchhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Q 040856 129 TITLALITVIDDIYDIYGTLDELELFTNAVERWDINFAIKQLPDYMKICFFALYNFVSEVAYDILKQQDSDQLLRIKNSW 208 (391)
Q Consensus 129 aK~~~l~~~iDD~~D~~gt~eel~~~~~ai~rWd~~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~l~~~w 208 (391)
+....++..++.+-+.-+.++.+......+-+ .+...+--|++.+.+-.+|+.++.+ |....+-..++|
T Consensus 65 ~h~~~v~~~l~~~v~~ld~~~~l~~~l~~L~~--~H~~~gV~p~~f~~~~~~ll~~l~~---------g~~~t~e~~~AW 133 (152)
T 3pt8_A 65 AQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAK--LHNNRGIRASDLRTAYDILIHYMED---------HNHMVGGAKDAW 133 (152)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHH--HHHTTTCCHHHHHHHHHHHHHHHHH---------TTCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHH---------cCcCCHHHHHHH
Confidence 33445666667666666666766666666644 2212334478888888999888876 233455778888
Q ss_pred HHHHHHH
Q 040856 209 LGLLQAF 215 (391)
Q Consensus 209 ~~~~~a~ 215 (391)
.+.+...
T Consensus 134 ~~~~~~v 140 (152)
T 3pt8_A 134 EVFVGFI 140 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766443
No 25
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=22.79 E-value=3.4e+02 Score=25.03 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=54.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhccccchhhHHHHHHH-hhcCCCCchHHHhhhccChHHHHH
Q 040856 197 DSDQLLRIKNSWLGLLQAFLVEAKWYHNKYAPTLEEYLKNAALSIAGPLITITAY-LSATDPIVEKELEYLESNPDVIQW 275 (391)
Q Consensus 197 ~~~~~~~l~~~w~~~~~a~~~EA~W~~~~~iPs~eEYl~~~~~s~g~~~~~~~~~-~~~g~~l~~e~~e~~~~~p~l~~~ 275 (391)
.+.+...+.+....++.+-..+..|......||.++|+..-..-+|..+.++... ..++. .++ ..-.+-..
T Consensus 109 ~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~ 180 (301)
T 2q80_A 109 HPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNT 180 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHH
Confidence 3455667888889999999999999877668999999998665555432221111 11222 121 13445566
Q ss_pred HHHHHHHhcCCCCC
Q 040856 276 SSRIFRLLDDLGTS 289 (391)
Q Consensus 276 ~~~i~RL~NDi~S~ 289 (391)
.....-+.||+..+
T Consensus 181 lG~aFQi~DD~ld~ 194 (301)
T 2q80_A 181 LGLFFQIRDDYANL 194 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 66677777777554
Done!