BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040862
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 QIAIPVFYRVDPSHVRKQIGSFGVSFSELEEKFP-EKMQRWRSALTEAANLSGFDSLQNE 63
+I +P+FY VDPS VR Q G + +F + KF + +Q W+ AL + +L G+ +N+
Sbjct: 124 RIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKND 183
Query: 64 LVGV 67
G
Sbjct: 184 KQGA 187
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 8 IPVFYRVDPSHVRKQIGSFGVSFSE-LEEKFPEKMQRWRSALTEAANLSG 56
+P+FY V+P+HVR Q G F + + PEK+ +WR ALT A LSG
Sbjct: 99 MPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSG 148
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 52/241 (21%)
Query: 109 FEGSCFLENVREES---QKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR------ 159
EG CF V S Q GL Q L + + +D + + LN R
Sbjct: 180 LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 238
Query: 160 ----KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQM--------------KG 201
+ L++LDDV +S V L + +IL+TTR+K +
Sbjct: 239 RKHPRSLLILDDV-----WDSWV--LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS 291
Query: 202 FGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENA 261
G + LE+ + N+ D E + +I +G PL + ++G L + WE
Sbjct: 292 LGKEKGLEIL---SLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-WEYY 347
Query: 262 IKKLKN-----------FLHQNILDVLKISYDGLDNDEKNIFLDVACFFKGEDVYLAKKF 310
+K+L+N + ++ + + + IS + L D K+ + D++ K DV + K
Sbjct: 348 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK--DVKVPTKV 405
Query: 311 L 311
L
Sbjct: 406 L 406
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 52/241 (21%)
Query: 109 FEGSCFLENVREES---QKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR------ 159
EG CF V S Q GL Q L + + +D + + LN R
Sbjct: 174 LEG-CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 232
Query: 160 ----KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQM--------------KG 201
+ L++LDDV +S V L + +IL+TTR+K +
Sbjct: 233 RKHPRSLLILDDVW-----DSWV--LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESS 285
Query: 202 FGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENA 261
G + LE+ + N+ D E + +I +G PL + ++G L + WE
Sbjct: 286 LGKEKGLEILSLFV---NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-WEYY 341
Query: 262 IKKLKN-----------FLHQNILDVLKISYDGLDNDEKNIFLDVACFFKGEDVYLAKKF 310
+K+L+N + ++ + + + IS + L D K+ + D++ K DV + K
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQK--DVKVPTKV 399
Query: 311 L 311
L
Sbjct: 400 L 400
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide,
Nmr, Ensemble Of Structures
Length = 160
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 241 LALKILGCY-LFE-RKREVWENAIKKLKNFLHQNILDVLKISYDGL---DNDEKNIFLD 294
++K LGC +FE R +V E A+K L+ + + +L +S DGL D++ K + +D
Sbjct: 32 FSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD 90
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 253 RKREVWENAIKKLKNFLHQNILDVLKISYDGL---DNDEKNIFLD 294
R V E+A+KKLK +++ VL +S DGL D+ K++ +D
Sbjct: 58 RGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVD 102
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 239 VPLALKILGCY-LFE-RKREVWENAIKKLKNFLHQNILDVLKISYDGL---DNDEKNIFL 293
++K LGC +FE R +V E A+K L+ + + +L +S DGL D++ K + +
Sbjct: 15 CSFSVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIV 74
Query: 294 D 294
D
Sbjct: 75 D 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,525,633
Number of Sequences: 62578
Number of extensions: 416517
Number of successful extensions: 1071
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 12
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)