Query 040862
Match_columns 381
No_of_seqs 245 out of 2517
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.3E-57 1.4E-61 474.6 38.5 379 2-381 96-530 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-37 4E-42 312.7 24.5 285 65-354 161-496 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-35 4.9E-40 268.3 14.8 247 67-318 1-283 (287)
4 PRK04841 transcriptional regul 99.8 2.8E-18 6E-23 179.9 28.4 296 59-376 11-351 (903)
5 COG2909 MalT ATP-dependent tra 99.8 1.8E-16 3.9E-21 154.0 24.1 296 57-377 14-358 (894)
6 COG3899 Predicted ATPase [Gene 99.7 7.3E-16 1.6E-20 157.1 17.5 306 63-380 1-406 (849)
7 PRK00411 cdc6 cell division co 99.6 1.3E-12 2.8E-17 124.2 23.7 266 57-333 25-357 (394)
8 PRK00080 ruvB Holliday junctio 99.5 1.9E-13 4E-18 126.3 16.1 244 62-339 25-315 (328)
9 PF01637 Arch_ATPase: Archaeal 99.5 9E-14 2E-18 122.2 11.4 174 64-245 1-233 (234)
10 TIGR00635 ruvB Holliday juncti 99.5 6.2E-13 1.3E-17 121.9 17.0 244 62-339 4-294 (305)
11 TIGR02928 orc1/cdc6 family rep 99.5 7.3E-11 1.6E-15 111.0 27.6 265 59-334 12-350 (365)
12 TIGR03015 pepcterm_ATPase puta 99.4 5E-11 1.1E-15 107.2 18.8 165 80-250 42-242 (269)
13 PF05729 NACHT: NACHT domain 99.3 4.9E-11 1.1E-15 98.9 11.4 131 82-215 1-163 (166)
14 COG3903 Predicted ATPase [Gene 99.2 1.3E-11 2.9E-16 111.9 7.0 277 75-356 8-317 (414)
15 PF14516 AAA_35: AAA-like doma 99.1 4.3E-08 9.3E-13 90.5 25.5 186 60-252 9-245 (331)
16 PRK00440 rfc replication facto 99.1 1.8E-08 3.9E-13 93.0 19.2 167 62-245 17-202 (319)
17 PRK12402 replication factor C 99.1 1.2E-08 2.6E-13 94.9 18.0 180 62-245 15-225 (337)
18 PRK13342 recombination factor 99.0 3.3E-08 7.2E-13 94.2 19.8 163 62-249 12-199 (413)
19 PRK07003 DNA polymerase III su 99.0 3.9E-08 8.4E-13 97.0 20.2 172 62-245 16-220 (830)
20 PF05496 RuvB_N: Holliday junc 99.0 4.4E-09 9.5E-14 89.0 11.6 158 62-248 24-223 (233)
21 PLN03025 replication factor C 99.0 1E-07 2.2E-12 87.8 21.5 166 62-243 13-197 (319)
22 PRK04195 replication factor C 99.0 4.1E-08 8.9E-13 95.4 19.5 163 62-247 14-203 (482)
23 COG1474 CDC6 Cdc6-related prot 99.0 2.2E-07 4.7E-12 86.3 23.1 262 60-334 15-334 (366)
24 PRK06893 DNA replication initi 99.0 1.1E-08 2.3E-13 89.5 13.7 143 80-250 38-207 (229)
25 PTZ00112 origin recognition co 99.0 1E-08 2.2E-13 101.8 14.7 158 54-217 747-951 (1164)
26 COG2256 MGS1 ATPase related to 99.0 1.4E-08 3E-13 92.0 14.2 156 62-242 24-208 (436)
27 PRK12323 DNA polymerase III su 99.0 1.4E-07 3E-12 91.9 21.4 178 62-246 16-225 (700)
28 PRK14961 DNA polymerase III su 98.9 8.9E-08 1.9E-12 89.6 18.8 171 62-244 16-218 (363)
29 COG2255 RuvB Holliday junction 98.9 1E-08 2.2E-13 88.7 11.2 245 62-340 26-317 (332)
30 TIGR03420 DnaA_homol_Hda DnaA 98.9 3.9E-08 8.5E-13 86.0 15.3 161 62-250 15-205 (226)
31 PRK14963 DNA polymerase III su 98.9 8.5E-08 1.8E-12 92.8 18.2 174 62-244 14-215 (504)
32 PF13173 AAA_14: AAA domain 98.9 1E-08 2.3E-13 81.1 9.9 100 80-198 1-100 (128)
33 PF13191 AAA_16: AAA ATPase do 98.9 7.9E-09 1.7E-13 87.3 9.4 46 63-108 1-51 (185)
34 PRK14949 DNA polymerase III su 98.9 2E-07 4.3E-12 93.8 20.2 168 62-246 16-220 (944)
35 PRK08727 hypothetical protein; 98.9 1E-07 2.2E-12 83.6 15.4 154 62-243 19-201 (233)
36 PRK14960 DNA polymerase III su 98.9 1.8E-07 3.9E-12 91.3 18.4 172 62-245 15-218 (702)
37 PRK14956 DNA polymerase III su 98.9 2E-07 4.3E-12 88.4 18.3 170 62-243 18-219 (484)
38 PRK08691 DNA polymerase III su 98.9 2E-07 4.3E-12 91.8 18.8 174 62-247 16-221 (709)
39 PRK08084 DNA replication initi 98.8 1.3E-07 2.9E-12 82.9 15.3 150 70-248 32-211 (235)
40 cd00009 AAA The AAA+ (ATPases 98.8 4.9E-08 1.1E-12 78.8 11.5 121 65-198 1-131 (151)
41 PF00308 Bac_DnaA: Bacterial d 98.8 9.4E-08 2E-12 82.8 13.3 151 81-249 34-211 (219)
42 PRK14964 DNA polymerase III su 98.8 5E-07 1.1E-11 86.6 18.9 170 62-243 13-214 (491)
43 PTZ00202 tuzin; Provisional 98.8 1.9E-06 4.1E-11 80.0 21.7 148 56-215 256-434 (550)
44 PRK07994 DNA polymerase III su 98.8 1.8E-07 3.9E-12 92.3 15.8 173 62-246 16-220 (647)
45 TIGR02397 dnaX_nterm DNA polym 98.8 4.9E-07 1.1E-11 84.7 17.5 166 62-247 14-219 (355)
46 PRK07471 DNA polymerase III su 98.8 1.4E-06 3E-11 81.1 20.1 179 60-246 17-238 (365)
47 PRK06645 DNA polymerase III su 98.8 5.4E-07 1.2E-11 87.0 17.7 174 62-243 21-226 (507)
48 PRK14962 DNA polymerase III su 98.8 4.6E-07 9.9E-12 87.1 17.2 167 62-248 14-221 (472)
49 TIGR01242 26Sp45 26S proteasom 98.8 6.5E-08 1.4E-12 90.7 11.3 156 62-240 122-328 (364)
50 PRK14955 DNA polymerase III su 98.8 8.1E-07 1.8E-11 84.2 18.6 178 62-245 16-227 (397)
51 PRK14950 DNA polymerase III su 98.7 3.3E-07 7.1E-12 91.0 16.4 176 62-248 16-223 (585)
52 PRK05642 DNA replication initi 98.7 2.1E-07 4.6E-12 81.5 13.4 142 81-250 45-212 (234)
53 PRK09112 DNA polymerase III su 98.7 2.7E-07 5.9E-12 85.3 14.8 179 60-246 21-240 (351)
54 PRK14958 DNA polymerase III su 98.7 6.8E-07 1.5E-11 86.8 18.1 172 62-245 16-219 (509)
55 PRK14970 DNA polymerase III su 98.7 1.4E-06 3.1E-11 81.9 20.0 165 62-245 17-208 (367)
56 PF13401 AAA_22: AAA domain; P 98.7 4.5E-08 9.7E-13 77.7 8.4 111 80-196 3-125 (131)
57 PRK08903 DnaA regulatory inact 98.7 2.7E-07 5.8E-12 80.8 13.7 157 62-250 18-203 (227)
58 PRK14957 DNA polymerase III su 98.7 5.3E-07 1.2E-11 87.6 16.8 160 62-241 16-215 (546)
59 PRK14087 dnaA chromosomal repl 98.7 2.2E-07 4.7E-12 89.1 13.6 156 81-250 141-323 (450)
60 PRK14951 DNA polymerase III su 98.7 9.4E-07 2E-11 87.1 18.2 178 62-246 16-225 (618)
61 PRK05564 DNA polymerase III su 98.7 4.8E-07 1E-11 83.1 15.2 161 62-244 4-188 (313)
62 PRK13341 recombination factor 98.7 6.8E-07 1.5E-11 90.0 16.8 156 62-243 28-214 (725)
63 PRK03992 proteasome-activating 98.7 3.4E-07 7.3E-12 86.4 13.9 156 62-240 131-337 (389)
64 PRK09087 hypothetical protein; 98.7 4.6E-07 1E-11 78.8 13.4 132 80-250 43-199 (226)
65 PRK05896 DNA polymerase III su 98.7 6.1E-07 1.3E-11 87.4 15.6 170 62-243 16-217 (605)
66 TIGR00678 holB DNA polymerase 98.7 4.7E-07 1E-11 76.7 13.0 76 158-241 95-186 (188)
67 PRK09111 DNA polymerase III su 98.7 3.3E-06 7.3E-11 83.3 20.7 179 62-247 24-234 (598)
68 PRK07940 DNA polymerase III su 98.7 7.2E-07 1.6E-11 83.7 14.9 164 62-243 5-210 (394)
69 PRK14969 DNA polymerase III su 98.6 9.1E-07 2E-11 86.5 15.8 170 62-243 16-217 (527)
70 TIGR02881 spore_V_K stage V sp 98.6 4.4E-07 9.5E-12 81.1 12.6 26 81-106 42-67 (261)
71 TIGR02639 ClpA ATP-dependent C 98.6 4.8E-07 1E-11 92.3 14.2 160 62-237 182-382 (731)
72 PRK07764 DNA polymerase III su 98.6 2.4E-06 5.3E-11 87.1 18.9 170 62-243 15-218 (824)
73 TIGR03345 VI_ClpV1 type VI sec 98.6 5.1E-07 1.1E-11 93.0 14.1 159 62-239 187-389 (852)
74 KOG0989 Replication factor C, 98.6 6E-07 1.3E-11 78.7 12.2 162 62-240 36-224 (346)
75 PRK14953 DNA polymerase III su 98.6 1.4E-05 3E-10 77.3 21.6 174 62-247 16-221 (486)
76 PRK14954 DNA polymerase III su 98.6 4.2E-06 9.2E-11 82.8 18.3 176 62-243 16-225 (620)
77 PRK14088 dnaA chromosomal repl 98.6 1.4E-06 3E-11 83.4 14.6 151 82-249 131-308 (440)
78 PRK14959 DNA polymerase III su 98.6 5E-06 1.1E-10 81.6 18.4 176 62-249 16-224 (624)
79 PRK14952 DNA polymerase III su 98.6 3.2E-06 7E-11 83.0 16.9 168 62-241 13-214 (584)
80 CHL00095 clpC Clp protease ATP 98.5 9.5E-07 2E-11 91.3 13.3 45 62-106 179-225 (821)
81 PRK06305 DNA polymerase III su 98.5 4E-06 8.7E-11 80.5 16.5 165 62-243 17-219 (451)
82 PRK08451 DNA polymerase III su 98.5 2.5E-05 5.3E-10 75.8 21.8 166 62-246 14-218 (535)
83 PTZ00454 26S protease regulato 98.5 2.4E-06 5.2E-11 80.4 14.4 156 62-240 145-351 (398)
84 PF10443 RNA12: RNA12 protein; 98.5 8.2E-05 1.8E-09 69.2 23.9 267 67-353 1-392 (431)
85 PRK14948 DNA polymerase III su 98.5 8.3E-06 1.8E-10 81.1 18.7 176 62-247 16-223 (620)
86 KOG2227 Pre-initiation complex 98.5 3E-06 6.4E-11 78.5 14.2 187 60-251 148-373 (529)
87 COG1222 RPT1 ATP-dependent 26S 98.5 2.4E-06 5.1E-11 76.6 13.2 158 62-242 151-359 (406)
88 TIGR00362 DnaA chromosomal rep 98.5 2.3E-06 4.9E-11 81.6 14.1 149 81-247 136-311 (405)
89 PF05673 DUF815: Protein of un 98.5 1.1E-05 2.3E-10 69.6 16.6 47 62-108 27-79 (249)
90 TIGR03346 chaperone_ClpB ATP-d 98.5 1.4E-06 3E-11 90.4 13.5 46 62-107 173-220 (852)
91 PRK14971 DNA polymerase III su 98.5 1.6E-05 3.4E-10 79.1 20.3 173 62-245 17-221 (614)
92 PRK07133 DNA polymerase III su 98.5 4.3E-06 9.3E-11 83.3 16.0 168 62-243 18-216 (725)
93 TIGR03689 pup_AAA proteasome A 98.5 4.6E-06 1E-10 80.4 15.7 47 62-108 182-243 (512)
94 PHA02544 44 clamp loader, smal 98.5 2.3E-06 5.1E-11 78.8 13.3 115 62-197 21-141 (316)
95 PRK10865 protein disaggregatio 98.5 2.2E-06 4.8E-11 88.6 14.2 46 62-107 178-225 (857)
96 PRK00149 dnaA chromosomal repl 98.5 2.5E-06 5.4E-11 82.4 13.4 151 81-249 148-325 (450)
97 PRK06620 hypothetical protein; 98.5 2.5E-06 5.4E-11 73.6 11.9 24 82-105 45-68 (214)
98 PRK06647 DNA polymerase III su 98.5 1.5E-05 3.2E-10 78.4 18.5 173 62-246 16-220 (563)
99 PLN03194 putative disease resi 98.4 2.3E-07 4.9E-12 76.0 4.6 48 4-61 109-157 (187)
100 PRK12422 chromosomal replicati 98.4 9.4E-06 2E-10 77.7 16.3 141 82-241 142-308 (445)
101 KOG2028 ATPase related to the 98.4 2.2E-06 4.7E-11 76.9 10.9 159 62-241 138-331 (554)
102 PF00004 AAA: ATPase family as 98.4 2.4E-06 5.3E-11 67.6 10.2 23 84-106 1-23 (132)
103 PRK05563 DNA polymerase III su 98.4 1.1E-05 2.3E-10 79.6 16.6 170 62-243 16-217 (559)
104 TIGR02880 cbbX_cfxQ probable R 98.4 8.2E-06 1.8E-10 73.6 14.4 117 82-216 59-209 (284)
105 PTZ00361 26 proteosome regulat 98.4 4E-06 8.6E-11 79.6 12.8 156 62-240 183-389 (438)
106 PRK14086 dnaA chromosomal repl 98.4 6.6E-06 1.4E-10 80.4 14.4 152 81-250 314-492 (617)
107 PRK14965 DNA polymerase III su 98.4 1.7E-05 3.7E-10 78.6 17.7 173 62-246 16-221 (576)
108 COG1373 Predicted ATPase (AAA+ 98.4 1.6E-05 3.4E-10 75.2 16.5 228 66-333 21-269 (398)
109 PRK12377 putative replication 98.4 1.4E-05 3E-10 70.2 14.5 100 80-195 100-204 (248)
110 CHL00181 cbbX CbbX; Provisiona 98.4 1.6E-05 3.4E-10 71.8 15.2 117 82-216 60-210 (287)
111 PRK11034 clpA ATP-dependent Cl 98.3 3.7E-06 7.9E-11 85.2 11.2 45 62-106 186-232 (758)
112 PF01695 IstB_IS21: IstB-like 98.3 1.1E-06 2.3E-11 73.5 6.0 112 78-212 44-159 (178)
113 COG0593 DnaA ATPase involved i 98.3 1.6E-05 3.4E-10 74.1 14.1 144 81-243 113-283 (408)
114 CHL00176 ftsH cell division pr 98.3 2E-05 4.4E-10 78.5 15.7 161 62-245 183-394 (638)
115 PRK08181 transposase; Validate 98.3 6.3E-06 1.4E-10 73.3 10.6 104 76-196 101-208 (269)
116 COG3267 ExeA Type II secretory 98.3 9.4E-05 2E-09 63.7 17.0 173 70-248 39-247 (269)
117 TIGR02903 spore_lon_C ATP-depe 98.3 8.5E-05 1.8E-09 74.2 19.6 44 62-105 154-199 (615)
118 PRK08116 hypothetical protein; 98.3 6.8E-06 1.5E-10 73.4 10.5 102 81-196 114-220 (268)
119 TIGR01241 FtsH_fam ATP-depende 98.3 1.5E-05 3.2E-10 78.0 13.5 163 62-247 55-268 (495)
120 PRK05707 DNA polymerase III su 98.3 2.7E-05 5.8E-10 71.6 14.0 81 160-246 107-203 (328)
121 PRK07399 DNA polymerase III su 98.2 7.2E-05 1.6E-09 68.3 16.4 174 62-246 4-221 (314)
122 KOG0991 Replication factor C, 98.2 8.1E-05 1.8E-09 63.0 15.0 53 62-114 27-82 (333)
123 KOG2543 Origin recognition com 98.2 3.4E-05 7.4E-10 69.9 13.3 147 61-215 5-193 (438)
124 cd01128 rho_factor Transcripti 98.2 5.8E-06 1.3E-10 72.7 8.4 89 80-171 15-115 (249)
125 PRK10536 hypothetical protein; 98.2 5.4E-05 1.2E-09 66.1 14.1 134 62-198 55-214 (262)
126 PF05621 TniB: Bacterial TniB 98.2 0.0001 2.2E-09 65.7 16.1 180 62-245 34-260 (302)
127 TIGR01243 CDC48 AAA family ATP 98.2 2.6E-05 5.5E-10 80.0 14.1 46 62-107 178-238 (733)
128 PLN00020 ribulose bisphosphate 98.2 6.6E-05 1.4E-09 68.6 14.8 141 80-241 147-333 (413)
129 TIGR01243 CDC48 AAA family ATP 98.1 5.2E-05 1.1E-09 77.8 15.1 156 62-240 453-657 (733)
130 COG1484 DnaC DNA replication p 98.1 1.3E-05 2.8E-10 70.9 8.8 87 67-169 88-177 (254)
131 PRK09376 rho transcription ter 98.1 8.5E-06 1.8E-10 75.1 7.6 89 80-171 168-268 (416)
132 PRK07952 DNA replication prote 98.1 0.00013 2.9E-09 63.9 14.8 121 70-211 84-213 (244)
133 CHL00195 ycf46 Ycf46; Provisio 98.1 6E-05 1.3E-09 72.8 13.5 46 62-107 228-285 (489)
134 KOG0744 AAA+-type ATPase [Post 98.1 8.8E-06 1.9E-10 72.0 7.0 26 80-105 176-201 (423)
135 KOG0733 Nuclear AAA ATPase (VC 98.1 3.3E-05 7.1E-10 73.9 11.3 47 62-108 190-250 (802)
136 smart00382 AAA ATPases associa 98.1 1.5E-05 3.3E-10 63.5 7.8 29 81-109 2-30 (148)
137 TIGR00767 rho transcription te 98.1 1.7E-05 3.8E-10 73.4 9.0 90 80-172 167-268 (415)
138 PRK06526 transposase; Provisio 98.1 3.9E-05 8.5E-10 67.9 10.6 29 80-108 97-125 (254)
139 TIGR02640 gas_vesic_GvpN gas v 98.1 0.00019 4.2E-09 64.0 15.1 37 70-106 10-46 (262)
140 PRK08769 DNA polymerase III su 98.0 0.00024 5.3E-09 64.8 15.5 80 159-246 113-208 (319)
141 PRK06871 DNA polymerase III su 98.0 0.00032 7E-09 64.1 16.0 154 72-242 12-199 (325)
142 PRK09183 transposase/IS protei 98.0 2.4E-05 5.1E-10 69.6 7.9 39 70-108 89-129 (259)
143 COG0466 Lon ATP-dependent Lon 98.0 5.8E-05 1.2E-09 73.8 10.9 49 62-110 323-379 (782)
144 PRK11331 5-methylcytosine-spec 98.0 2.6E-05 5.6E-10 73.4 8.0 46 62-107 175-220 (459)
145 COG2812 DnaX DNA polymerase II 98.0 0.00038 8.3E-09 67.0 15.9 168 62-241 16-215 (515)
146 PRK08058 DNA polymerase III su 98.0 0.0002 4.4E-09 66.1 13.8 140 63-214 6-181 (329)
147 PRK06835 DNA replication prote 98.0 4.8E-05 1E-09 69.8 9.5 37 80-116 182-218 (329)
148 PRK08939 primosomal protein Dn 98.0 8.6E-05 1.9E-09 67.6 11.0 123 66-211 135-269 (306)
149 KOG0730 AAA+-type ATPase [Post 97.9 0.00011 2.4E-09 71.1 12.1 157 62-241 434-638 (693)
150 PRK07993 DNA polymerase III su 97.9 0.00043 9.3E-09 63.9 15.0 155 72-243 12-201 (334)
151 KOG2228 Origin recognition com 97.9 0.0001 2.3E-09 65.7 10.3 152 60-215 22-219 (408)
152 COG0542 clpA ATP-binding subun 97.9 2.3E-05 5E-10 78.3 6.9 139 62-214 170-345 (786)
153 TIGR00602 rad24 checkpoint pro 97.9 8.5E-05 1.8E-09 73.7 10.5 45 62-106 84-135 (637)
154 TIGR02639 ClpA ATP-dependent C 97.9 0.00019 4E-09 73.6 13.3 45 62-106 454-509 (731)
155 PRK06921 hypothetical protein; 97.9 2.3E-05 5.1E-10 69.9 5.8 37 80-116 116-153 (266)
156 KOG1969 DNA replication checkp 97.9 8.9E-05 1.9E-09 72.5 9.9 73 80-171 325-399 (877)
157 PRK06090 DNA polymerase III su 97.8 0.0019 4.2E-08 58.9 17.7 154 72-246 13-201 (319)
158 COG2607 Predicted ATPase (AAA+ 97.8 0.0017 3.8E-08 55.4 15.9 111 62-198 60-184 (287)
159 KOG1514 Origin recognition com 97.8 0.00092 2E-08 65.4 16.0 152 61-218 395-592 (767)
160 KOG0735 AAA+-type ATPase [Post 97.8 0.0008 1.7E-08 65.9 15.4 158 62-242 667-872 (952)
161 KOG0735 AAA+-type ATPase [Post 97.8 0.00038 8.3E-09 68.0 13.2 75 80-169 430-504 (952)
162 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00025 5.4E-09 73.5 12.9 46 62-107 566-622 (852)
163 KOG2004 Mitochondrial ATP-depe 97.8 0.0002 4.4E-09 69.9 11.1 49 62-110 411-467 (906)
164 TIGR02902 spore_lonB ATP-depen 97.8 0.00056 1.2E-08 67.3 14.5 44 62-105 65-110 (531)
165 KOG0736 Peroxisome assembly fa 97.8 0.0015 3.2E-08 64.6 16.9 91 60-170 670-775 (953)
166 TIGR00763 lon ATP-dependent pr 97.8 0.00026 5.7E-09 72.9 12.7 47 62-108 320-374 (775)
167 PRK12608 transcription termina 97.8 0.00017 3.8E-09 66.4 9.9 96 72-170 121-231 (380)
168 PHA00729 NTP-binding motif con 97.8 5.1E-05 1.1E-09 65.1 6.0 27 80-106 16-42 (226)
169 PRK04132 replication factor C 97.8 0.0009 2E-08 68.4 15.8 143 86-245 569-730 (846)
170 COG1223 Predicted ATPase (AAA+ 97.8 0.00034 7.3E-09 60.4 10.7 46 62-107 121-177 (368)
171 PF04665 Pox_A32: Poxvirus A32 97.7 8.2E-05 1.8E-09 64.6 6.8 38 79-116 11-48 (241)
172 PRK06964 DNA polymerase III su 97.7 0.0013 2.9E-08 60.6 15.0 77 159-245 132-224 (342)
173 KOG0731 AAA+-type ATPase conta 97.7 0.00048 1E-08 68.7 12.6 160 62-243 311-521 (774)
174 cd01131 PilT Pilus retraction 97.7 0.00016 3.4E-09 61.7 8.2 106 82-196 2-108 (198)
175 KOG0726 26S proteasome regulat 97.7 0.00033 7.2E-09 61.3 10.0 45 62-106 185-244 (440)
176 PF14532 Sigma54_activ_2: Sigm 97.7 7E-05 1.5E-09 59.9 5.5 42 65-106 1-46 (138)
177 PRK10787 DNA-binding ATP-depen 97.7 0.00048 1E-08 70.6 12.7 47 62-108 322-376 (784)
178 KOG0652 26S proteasome regulat 97.7 0.001 2.2E-08 57.5 12.4 44 62-105 171-229 (424)
179 KOG0739 AAA+-type ATPase [Post 97.7 0.0013 2.9E-08 57.9 13.3 66 41-106 112-191 (439)
180 PF02562 PhoH: PhoH-like prote 97.7 0.00011 2.4E-09 62.3 6.5 128 67-198 5-157 (205)
181 PF07728 AAA_5: AAA domain (dy 97.7 2.6E-05 5.6E-10 62.5 2.4 22 84-105 2-23 (139)
182 cd01120 RecA-like_NTPases RecA 97.6 7.3E-05 1.6E-09 61.3 5.0 33 83-115 1-33 (165)
183 KOG0734 AAA+-type ATPase conta 97.6 0.0006 1.3E-08 64.6 11.1 111 62-192 304-442 (752)
184 KOG0728 26S proteasome regulat 97.6 0.0011 2.3E-08 56.9 11.6 113 65-197 150-296 (404)
185 KOG1970 Checkpoint RAD17-RFC c 97.6 0.00087 1.9E-08 63.8 12.1 26 80-105 109-134 (634)
186 KOG0743 AAA+-type ATPase [Post 97.6 0.0042 9.2E-08 58.0 16.3 25 81-105 235-259 (457)
187 COG0470 HolB ATPase involved i 97.6 0.00086 1.9E-08 61.9 11.9 122 63-198 2-150 (325)
188 TIGR02974 phageshock_pspF psp 97.6 0.0016 3.5E-08 60.0 13.5 42 64-105 1-46 (329)
189 PF13177 DNA_pol3_delta2: DNA 97.6 0.00043 9.4E-09 56.9 8.7 118 66-198 1-143 (162)
190 PRK10733 hflB ATP-dependent me 97.6 0.0011 2.3E-08 67.0 13.1 46 62-107 152-211 (644)
191 PRK08699 DNA polymerase III su 97.6 0.00075 1.6E-08 62.0 11.1 74 160-243 114-203 (325)
192 PF00158 Sigma54_activat: Sigm 97.6 0.00031 6.6E-09 58.1 7.7 42 64-105 1-46 (168)
193 KOG0651 26S proteasome regulat 97.6 0.00088 1.9E-08 59.3 10.8 48 62-109 132-194 (388)
194 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0021 4.6E-08 62.0 14.1 117 80-216 544-693 (802)
195 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00017 3.8E-09 64.3 6.5 102 69-180 67-170 (264)
196 PRK04296 thymidine kinase; Pro 97.6 0.00023 5E-09 60.3 7.0 109 81-199 2-118 (190)
197 cd00544 CobU Adenosylcobinamid 97.6 0.0021 4.5E-08 53.2 12.4 122 83-215 1-144 (169)
198 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00052 1.1E-08 71.5 10.7 46 62-107 565-621 (852)
199 TIGR01420 pilT_fam pilus retra 97.5 0.00039 8.4E-09 64.7 8.9 113 74-195 114-228 (343)
200 smart00763 AAA_PrkA PrkA AAA d 97.5 0.0001 2.2E-09 67.6 4.8 46 62-107 51-104 (361)
201 TIGR01817 nifA Nif-specific re 97.5 0.0039 8.5E-08 61.8 16.4 47 60-106 194-244 (534)
202 KOG0729 26S proteasome regulat 97.5 0.00082 1.8E-08 58.2 9.9 44 62-105 177-235 (435)
203 COG0464 SpoVK ATPases of the A 97.5 0.0017 3.7E-08 63.7 13.7 156 62-238 242-445 (494)
204 CHL00095 clpC Clp protease ATP 97.5 0.00051 1.1E-08 71.3 10.5 45 62-106 509-564 (821)
205 PRK10865 protein disaggregatio 97.5 0.00058 1.3E-08 71.0 10.8 45 62-106 568-623 (857)
206 COG1066 Sms Predicted ATP-depe 97.5 0.00058 1.3E-08 62.9 9.4 89 71-168 79-177 (456)
207 PRK11608 pspF phage shock prot 97.5 0.0024 5.3E-08 58.9 13.6 43 62-104 6-52 (326)
208 PF13207 AAA_17: AAA domain; P 97.5 8.5E-05 1.8E-09 57.9 3.4 23 83-105 1-23 (121)
209 PRK15429 formate hydrogenlyase 97.5 0.0055 1.2E-07 62.7 17.2 44 62-105 376-423 (686)
210 cd01133 F1-ATPase_beta F1 ATP 97.5 0.00053 1.1E-08 60.8 8.4 89 80-171 68-175 (274)
211 KOG2035 Replication factor C, 97.5 0.0029 6.3E-08 55.2 12.2 196 62-267 13-260 (351)
212 KOG0727 26S proteasome regulat 97.5 0.00065 1.4E-08 58.3 8.1 46 62-107 155-215 (408)
213 PF13604 AAA_30: AAA domain; P 97.4 0.00031 6.8E-09 59.8 6.1 131 70-215 6-149 (196)
214 KOG0738 AAA+-type ATPase [Post 97.4 0.0033 7.2E-08 57.4 12.7 47 60-106 210-270 (491)
215 PRK14722 flhF flagellar biosyn 97.4 0.0024 5.3E-08 59.4 12.2 86 80-169 136-225 (374)
216 COG1618 Predicted nucleotide k 97.4 0.00017 3.8E-09 57.5 3.9 34 82-115 6-40 (179)
217 PRK11034 clpA ATP-dependent Cl 97.4 0.00066 1.4E-08 69.2 8.9 45 62-106 458-513 (758)
218 cd01393 recA_like RecA is a b 97.4 0.00046 1E-08 60.2 6.8 29 80-108 18-46 (226)
219 COG0542 clpA ATP-binding subun 97.4 0.001 2.2E-08 66.8 9.7 111 62-182 491-618 (786)
220 PRK05800 cobU adenosylcobinami 97.4 0.0079 1.7E-07 49.8 13.5 123 82-215 2-144 (170)
221 COG3854 SpoIIIAA ncharacterize 97.4 0.00095 2.1E-08 56.6 7.9 113 83-200 139-256 (308)
222 cd01121 Sms Sms (bacterial rad 97.3 0.0011 2.3E-08 62.1 9.1 81 80-168 81-167 (372)
223 PRK05022 anaerobic nitric oxid 97.3 0.015 3.4E-07 57.1 17.7 47 60-106 185-235 (509)
224 KOG0741 AAA+-type ATPase [Post 97.3 0.0026 5.6E-08 60.4 11.4 34 80-115 537-570 (744)
225 PRK06696 uridine kinase; Valid 97.3 0.00039 8.5E-09 60.5 5.6 43 66-108 2-49 (223)
226 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00048 1E-08 64.1 6.4 96 80-180 133-233 (358)
227 cd01394 radB RadB. The archaea 97.3 0.0011 2.4E-08 57.4 8.4 44 73-116 7-54 (218)
228 COG4088 Predicted nucleotide k 97.3 0.0014 3E-08 54.7 8.2 29 82-110 2-30 (261)
229 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.00078 1.7E-08 62.7 7.6 103 80-198 61-168 (362)
230 PRK06067 flagellar accessory p 97.3 0.0011 2.5E-08 58.1 8.2 37 80-116 24-60 (234)
231 PF00448 SRP54: SRP54-type pro 97.3 0.00055 1.2E-08 58.1 5.9 58 81-142 1-58 (196)
232 PF03215 Rad17: Rad17 cell cyc 97.3 0.003 6.4E-08 61.6 11.5 43 64-106 21-70 (519)
233 PRK13531 regulatory ATPase Rav 97.3 0.00031 6.8E-09 66.9 4.6 46 62-107 20-65 (498)
234 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.003 6.6E-08 51.3 9.7 114 82-198 3-139 (159)
235 PF10236 DAP3: Mitochondrial r 97.3 0.0091 2E-07 54.6 13.9 45 199-243 261-306 (309)
236 PRK11889 flhF flagellar biosyn 97.2 0.0033 7.1E-08 58.5 10.7 29 80-108 240-268 (436)
237 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0017 3.7E-08 56.7 8.3 45 152-198 150-200 (254)
238 cd01122 GP4d_helicase GP4d_hel 97.2 0.0026 5.5E-08 57.2 9.9 36 80-115 29-65 (271)
239 PF07088 GvpD: GvpD gas vesicl 97.2 0.0015 3.2E-08 59.8 8.1 32 80-111 9-40 (484)
240 KOG0737 AAA+-type ATPase [Post 97.2 0.0055 1.2E-07 55.7 11.6 54 57-110 87-156 (386)
241 COG4608 AppF ABC-type oligopep 97.2 0.001 2.2E-08 58.2 6.7 113 80-194 38-168 (268)
242 PRK08118 topology modulation p 97.2 0.00032 6.8E-09 58.1 3.5 25 82-106 2-26 (167)
243 PRK05541 adenylylsulfate kinas 97.2 0.00042 9.1E-09 57.9 4.0 36 80-115 6-41 (176)
244 TIGR03499 FlhF flagellar biosy 97.2 0.0037 8.1E-08 56.4 10.3 29 80-108 193-221 (282)
245 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0017 3.8E-08 52.2 7.3 99 80-196 25-126 (144)
246 PRK15455 PrkA family serine pr 97.1 0.00052 1.1E-08 66.5 4.5 47 62-108 76-130 (644)
247 PF01583 APS_kinase: Adenylyls 97.1 0.00068 1.5E-08 54.8 4.5 35 81-115 2-36 (156)
248 cd03214 ABC_Iron-Siderophores_ 97.1 0.0024 5.3E-08 53.5 7.9 35 80-115 24-58 (180)
249 PRK12723 flagellar biosynthesi 97.1 0.0058 1.3E-07 57.4 10.9 27 80-106 173-199 (388)
250 PRK11823 DNA repair protein Ra 97.1 0.0031 6.7E-08 60.7 9.4 91 71-169 66-166 (446)
251 CHL00206 ycf2 Ycf2; Provisiona 97.1 0.0035 7.5E-08 68.3 10.4 26 80-105 1629-1654(2281)
252 cd03247 ABCC_cytochrome_bd The 97.1 0.0037 8.1E-08 52.3 8.8 27 80-106 27-53 (178)
253 PF13238 AAA_18: AAA domain; P 97.1 0.00048 1E-08 54.1 3.2 22 84-105 1-22 (129)
254 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0031 6.6E-08 52.2 8.1 27 80-106 26-52 (166)
255 KOG0740 AAA+-type ATPase [Post 97.1 0.023 4.9E-07 53.4 14.5 63 41-107 136-212 (428)
256 PRK11388 DNA-binding transcrip 97.1 0.0096 2.1E-07 60.4 13.2 44 62-105 325-372 (638)
257 TIGR00416 sms DNA repair prote 97.1 0.0037 7.9E-08 60.3 9.6 90 71-168 80-179 (454)
258 PRK13765 ATP-dependent proteas 97.1 0.0011 2.5E-08 66.0 6.3 73 62-140 31-104 (637)
259 TIGR00764 lon_rel lon-related 97.1 0.0016 3.4E-08 65.1 7.4 57 62-118 18-75 (608)
260 PF00910 RNA_helicase: RNA hel 97.0 0.00037 8.1E-09 53.0 2.2 25 84-108 1-25 (107)
261 PF00437 T2SE: Type II/IV secr 97.0 0.0018 3.8E-08 58.2 6.9 120 62-195 104-230 (270)
262 cd03238 ABC_UvrA The excision 97.0 0.0022 4.8E-08 53.4 6.9 24 80-103 20-43 (176)
263 PRK07667 uridine kinase; Provi 97.0 0.0013 2.8E-08 55.8 5.6 29 80-108 16-44 (193)
264 PF02456 Adeno_IVa2: Adenoviru 97.0 0.014 3.1E-07 51.8 12.0 23 81-103 87-109 (369)
265 cd01130 VirB11-like_ATPase Typ 97.0 0.0017 3.7E-08 54.8 6.2 37 71-107 15-51 (186)
266 PRK05703 flhF flagellar biosyn 97.0 0.011 2.3E-07 56.6 12.0 26 81-106 221-246 (424)
267 cd03228 ABCC_MRP_Like The MRP 97.0 0.004 8.8E-08 51.7 8.2 27 80-106 27-53 (171)
268 TIGR02782 TrbB_P P-type conjug 97.0 0.0032 6.9E-08 57.3 8.0 96 72-176 123-221 (299)
269 COG0465 HflB ATP-dependent Zn 97.0 0.0064 1.4E-07 59.6 10.4 46 62-107 150-209 (596)
270 PF13671 AAA_33: AAA domain; P 97.0 0.00067 1.5E-08 54.4 3.3 24 83-106 1-24 (143)
271 PF13245 AAA_19: Part of AAA d 97.0 0.00099 2.1E-08 47.0 3.7 26 80-105 9-34 (76)
272 PF00485 PRK: Phosphoribulokin 97.0 0.00072 1.6E-08 57.5 3.6 26 83-108 1-26 (194)
273 PRK10820 DNA-binding transcrip 96.9 0.017 3.7E-07 56.9 13.5 43 62-104 204-250 (520)
274 cd03216 ABC_Carb_Monos_I This 96.9 0.0013 2.8E-08 54.2 4.9 110 80-196 25-141 (163)
275 COG3910 Predicted ATPase [Gene 96.9 0.021 4.6E-07 47.1 11.5 49 49-104 11-60 (233)
276 KOG1350 F0F1-type ATP synthase 96.9 0.0061 1.3E-07 54.1 9.0 118 62-182 163-318 (521)
277 TIGR02533 type_II_gspE general 96.9 0.0018 3.9E-08 62.9 6.4 101 70-180 230-332 (486)
278 cd02019 NK Nucleoside/nucleoti 96.9 0.00083 1.8E-08 46.5 3.0 23 83-105 1-23 (69)
279 PRK12724 flagellar biosynthesi 96.9 0.0054 1.2E-07 57.7 9.2 25 81-105 223-247 (432)
280 COG0055 AtpD F0F1-type ATP syn 96.9 0.002 4.3E-08 58.5 6.0 118 62-182 119-268 (468)
281 cd03246 ABCC_Protease_Secretio 96.9 0.0035 7.6E-08 52.2 7.3 27 80-106 27-53 (173)
282 PF03193 DUF258: Protein of un 96.9 0.0016 3.4E-08 53.0 4.8 35 69-104 24-58 (161)
283 COG2805 PilT Tfp pilus assembl 96.9 0.0087 1.9E-07 53.1 9.6 92 80-180 124-219 (353)
284 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0043 9.4E-08 54.4 8.1 26 80-105 18-43 (235)
285 PRK07261 topology modulation p 96.9 0.00078 1.7E-08 56.0 3.1 23 83-105 2-24 (171)
286 cd03115 SRP The signal recogni 96.9 0.017 3.8E-07 47.9 11.2 26 83-108 2-27 (173)
287 COG5635 Predicted NTPase (NACH 96.9 0.015 3.3E-07 60.6 13.1 117 80-198 221-349 (824)
288 PRK08233 hypothetical protein; 96.9 0.00089 1.9E-08 56.1 3.4 26 81-106 3-28 (182)
289 TIGR02525 plasmid_TraJ plasmid 96.9 0.0036 7.8E-08 58.4 7.7 96 80-180 148-246 (372)
290 PRK06762 hypothetical protein; 96.9 0.00096 2.1E-08 55.1 3.5 25 81-105 2-26 (166)
291 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0021 4.5E-08 50.6 5.1 33 74-106 15-47 (133)
292 PRK12727 flagellar biosynthesi 96.9 0.0024 5.2E-08 61.6 6.5 44 65-108 326-377 (559)
293 PRK14974 cell division protein 96.9 0.011 2.3E-07 54.5 10.5 28 81-108 140-167 (336)
294 PRK12726 flagellar biosynthesi 96.9 0.015 3.3E-07 53.9 11.4 29 80-108 205-233 (407)
295 PF00625 Guanylate_kin: Guanyl 96.9 0.0016 3.5E-08 54.8 4.9 36 81-116 2-37 (183)
296 PRK13833 conjugal transfer pro 96.9 0.0047 1E-07 56.4 8.1 95 72-176 135-232 (323)
297 cd02027 APSK Adenosine 5'-phos 96.8 0.002 4.2E-08 52.3 5.1 25 83-107 1-25 (149)
298 PHA02774 E1; Provisional 96.8 0.012 2.5E-07 57.4 11.0 38 69-106 419-459 (613)
299 PF13086 AAA_11: AAA domain; P 96.8 0.0027 5.8E-08 55.4 6.3 37 69-105 5-41 (236)
300 PTZ00301 uridine kinase; Provi 96.8 0.0014 3E-08 56.3 4.3 28 81-108 3-30 (210)
301 cd01125 repA Hexameric Replica 96.8 0.011 2.4E-07 52.0 10.2 23 83-105 3-25 (239)
302 TIGR00708 cobA cob(I)alamin ad 96.8 0.0081 1.8E-07 49.5 8.5 35 81-115 5-39 (173)
303 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0065 1.4E-07 50.6 8.1 27 80-106 24-50 (177)
304 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.001 2.2E-08 57.5 3.3 23 81-103 29-51 (213)
305 PF08433 KTI12: Chromatin asso 96.8 0.00045 9.8E-09 61.6 1.1 27 82-108 2-28 (270)
306 COG1117 PstB ABC-type phosphat 96.8 0.0095 2.1E-07 50.2 8.7 41 63-103 15-55 (253)
307 cd00227 CPT Chloramphenicol (C 96.8 0.0013 2.9E-08 54.8 3.9 26 81-106 2-27 (175)
308 COG2274 SunT ABC-type bacterio 96.8 0.0038 8.3E-08 63.2 7.8 25 80-104 498-522 (709)
309 PF07726 AAA_3: ATPase family 96.8 0.00078 1.7E-08 52.2 2.2 28 84-111 2-29 (131)
310 PRK10436 hypothetical protein; 96.8 0.0032 7E-08 60.5 6.9 101 70-180 206-308 (462)
311 COG1419 FlhF Flagellar GTP-bin 96.8 0.03 6.6E-07 52.1 12.8 26 81-106 203-228 (407)
312 PTZ00494 tuzin-like protein; P 96.8 0.49 1.1E-05 44.9 20.4 45 60-104 369-418 (664)
313 PRK09361 radB DNA repair and r 96.8 0.0025 5.4E-08 55.6 5.5 37 80-116 22-58 (225)
314 COG0714 MoxR-like ATPases [Gen 96.8 0.002 4.4E-08 59.6 5.2 49 62-110 24-72 (329)
315 PRK00771 signal recognition pa 96.8 0.013 2.8E-07 56.0 10.6 28 81-108 95-122 (437)
316 TIGR02237 recomb_radB DNA repa 96.8 0.0019 4.1E-08 55.6 4.6 37 80-116 11-47 (209)
317 PF03266 NTPase_1: NTPase; In 96.8 0.0017 3.8E-08 53.6 4.1 24 84-107 2-25 (168)
318 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.0098 2.1E-07 52.6 9.1 26 80-105 24-49 (246)
319 COG1136 SalX ABC-type antimicr 96.7 0.0034 7.4E-08 54.0 5.9 24 80-103 30-53 (226)
320 COG2884 FtsE Predicted ATPase 96.7 0.0057 1.2E-07 50.5 6.8 25 80-104 27-51 (223)
321 PF06068 TIP49: TIP49 C-termin 96.7 0.0028 6.2E-08 58.0 5.6 51 62-112 24-81 (398)
322 PRK04040 adenylate kinase; Pro 96.7 0.0016 3.5E-08 55.0 3.8 26 81-106 2-27 (188)
323 PRK00131 aroK shikimate kinase 96.7 0.0016 3.4E-08 54.2 3.7 27 80-106 3-29 (175)
324 PRK09270 nucleoside triphospha 96.7 0.002 4.4E-08 56.3 4.5 30 80-109 32-61 (229)
325 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.2E-08 55.1 3.6 26 80-105 2-27 (188)
326 PF01078 Mg_chelatase: Magnesi 96.7 0.0023 4.9E-08 54.1 4.5 43 62-104 3-45 (206)
327 PRK05480 uridine/cytidine kina 96.7 0.0014 3.1E-08 56.4 3.5 26 80-105 5-30 (209)
328 TIGR00390 hslU ATP-dependent p 96.7 0.002 4.2E-08 60.4 4.5 47 62-108 12-74 (441)
329 COG4555 NatA ABC-type Na+ tran 96.7 0.013 2.7E-07 49.1 8.4 26 80-105 27-52 (245)
330 PRK03839 putative kinase; Prov 96.7 0.0016 3.4E-08 54.6 3.4 24 83-106 2-25 (180)
331 TIGR02329 propionate_PrpR prop 96.7 0.05 1.1E-06 53.4 14.1 44 62-105 212-259 (526)
332 PHA02244 ATPase-like protein 96.7 0.0033 7.2E-08 58.0 5.6 46 62-107 96-145 (383)
333 TIGR02768 TraA_Ti Ti-type conj 96.6 0.018 3.9E-07 59.1 11.3 129 68-211 355-491 (744)
334 TIGR00959 ffh signal recogniti 96.6 0.035 7.6E-07 52.9 12.5 36 81-116 99-134 (428)
335 PRK10867 signal recognition pa 96.6 0.035 7.5E-07 53.0 12.4 36 81-116 100-135 (433)
336 COG0194 Gmk Guanylate kinase [ 96.6 0.0026 5.6E-08 52.4 4.2 26 80-105 3-28 (191)
337 cd03230 ABC_DR_subfamily_A Thi 96.6 0.014 3.1E-07 48.5 8.8 26 80-105 25-50 (173)
338 PRK13543 cytochrome c biogenes 96.6 0.018 4E-07 49.7 9.8 25 80-104 36-60 (214)
339 TIGR02538 type_IV_pilB type IV 96.6 0.0046 1E-07 61.4 6.7 102 69-180 303-406 (564)
340 COG1102 Cmk Cytidylate kinase 96.6 0.0018 3.8E-08 51.9 3.0 24 83-106 2-25 (179)
341 TIGR00235 udk uridine kinase. 96.6 0.0018 3.9E-08 55.6 3.3 27 80-106 5-31 (207)
342 KOG0058 Peptide exporter, ABC 96.6 0.0093 2E-07 59.0 8.4 24 80-103 493-516 (716)
343 PF00006 ATP-synt_ab: ATP synt 96.6 0.0082 1.8E-07 51.6 7.2 29 80-108 14-42 (215)
344 PRK10923 glnG nitrogen regulat 96.6 0.041 8.9E-07 53.7 13.1 44 62-105 138-185 (469)
345 PRK05973 replicative DNA helic 96.6 0.0036 7.8E-08 54.5 5.0 44 72-115 55-98 (237)
346 PRK07132 DNA polymerase III su 96.6 0.44 9.6E-06 43.3 18.5 144 71-238 5-177 (299)
347 cd03232 ABC_PDR_domain2 The pl 96.6 0.012 2.6E-07 49.9 8.1 25 80-104 32-56 (192)
348 PRK06547 hypothetical protein; 96.6 0.0033 7.2E-08 52.2 4.5 26 80-105 14-39 (172)
349 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0018 3.8E-08 54.5 2.9 23 83-105 1-23 (183)
350 PRK13894 conjugal transfer ATP 96.5 0.0077 1.7E-07 55.2 7.3 96 72-176 139-236 (319)
351 TIGR02788 VirB11 P-type DNA tr 96.5 0.0052 1.1E-07 56.3 6.2 95 80-180 143-238 (308)
352 PRK05201 hslU ATP-dependent pr 96.5 0.003 6.6E-08 59.2 4.6 47 62-108 15-77 (443)
353 cd01124 KaiC KaiC is a circadi 96.5 0.0028 6.1E-08 53.3 4.1 33 84-116 2-34 (187)
354 PRK00889 adenylylsulfate kinas 96.5 0.0032 7E-08 52.5 4.4 27 81-107 4-30 (175)
355 cd00071 GMPK Guanosine monopho 96.5 0.002 4.4E-08 51.4 3.0 26 83-108 1-26 (137)
356 PRK14723 flhF flagellar biosyn 96.5 0.044 9.4E-07 55.7 12.9 25 81-105 185-209 (767)
357 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0044 9.6E-08 54.5 5.4 37 80-116 20-56 (237)
358 PF03308 ArgK: ArgK protein; 96.5 0.0044 9.5E-08 54.0 5.2 29 80-108 28-56 (266)
359 TIGR01650 PD_CobS cobaltochela 96.5 0.0056 1.2E-07 55.7 6.1 48 62-109 45-92 (327)
360 PRK10463 hydrogenase nickel in 96.5 0.0052 1.1E-07 55.0 5.8 37 74-110 95-133 (290)
361 cd01852 AIG1 AIG1 (avrRpt2-ind 96.5 0.044 9.6E-07 46.5 11.3 22 83-104 2-23 (196)
362 PF04548 AIG1: AIG1 family; I 96.5 0.033 7.3E-07 48.0 10.7 21 83-103 2-22 (212)
363 TIGR02322 phosphon_PhnN phosph 96.5 0.0024 5.2E-08 53.5 3.4 25 82-106 2-26 (179)
364 cd02028 UMPK_like Uridine mono 96.5 0.0032 7E-08 52.7 4.1 25 83-107 1-25 (179)
365 PRK05986 cob(I)alamin adenolsy 96.5 0.0073 1.6E-07 50.5 6.1 40 80-119 21-60 (191)
366 TIGR02868 CydC thiol reductant 96.5 0.0083 1.8E-07 59.5 7.7 25 80-104 360-384 (529)
367 COG2804 PulE Type II secretory 96.5 0.0096 2.1E-07 56.7 7.6 113 68-194 244-358 (500)
368 PRK09544 znuC high-affinity zi 96.5 0.018 3.8E-07 51.1 8.9 26 80-105 29-54 (251)
369 PRK00625 shikimate kinase; Pro 96.5 0.0027 5.8E-08 52.8 3.5 24 83-106 2-25 (173)
370 PRK12597 F0F1 ATP synthase sub 96.5 0.012 2.6E-07 56.3 8.2 88 80-170 142-248 (461)
371 TIGR02858 spore_III_AA stage I 96.5 0.017 3.7E-07 51.6 8.7 110 81-197 111-229 (270)
372 TIGR01039 atpD ATP synthase, F 96.5 0.015 3.2E-07 55.5 8.7 88 80-170 142-248 (461)
373 cd02021 GntK Gluconate kinase 96.5 0.0022 4.9E-08 51.9 2.9 23 83-105 1-23 (150)
374 PRK09280 F0F1 ATP synthase sub 96.5 0.013 2.9E-07 55.9 8.3 88 80-170 143-249 (463)
375 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0049 1.1E-07 54.9 5.2 37 80-116 35-71 (259)
376 COG0529 CysC Adenylylsulfate k 96.4 0.0041 8.9E-08 50.7 4.2 36 80-116 22-57 (197)
377 PRK04301 radA DNA repair and r 96.4 0.024 5.2E-07 52.2 9.9 27 80-106 101-127 (317)
378 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.0049 1.1E-07 50.4 4.8 35 80-115 24-58 (157)
379 PF06745 KaiC: KaiC; InterPro 96.4 0.0079 1.7E-07 52.4 6.4 37 80-116 18-55 (226)
380 COG4133 CcmA ABC-type transpor 96.4 0.04 8.8E-07 45.6 9.8 29 80-108 27-55 (209)
381 PF03205 MobB: Molybdopterin g 96.4 0.0047 1E-07 49.4 4.5 27 82-108 1-27 (140)
382 PF05970 PIF1: PIF1-like helic 96.4 0.01 2.2E-07 55.7 7.4 29 80-108 21-49 (364)
383 TIGR03411 urea_trans_UrtD urea 96.4 0.033 7.1E-07 49.1 10.3 25 80-104 27-51 (242)
384 COG0572 Udk Uridine kinase [Nu 96.4 0.0035 7.6E-08 53.3 3.8 28 81-108 8-35 (218)
385 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0045 9.8E-08 56.5 4.7 47 62-108 61-115 (358)
386 TIGR01425 SRP54_euk signal rec 96.4 0.078 1.7E-06 50.4 13.1 28 81-108 100-127 (429)
387 PRK14737 gmk guanylate kinase; 96.4 0.0033 7E-08 53.0 3.5 26 80-105 3-28 (186)
388 PRK11131 ATP-dependent RNA hel 96.4 0.015 3.2E-07 62.2 9.0 39 68-106 76-114 (1294)
389 COG0467 RAD55 RecA-superfamily 96.4 0.0058 1.3E-07 54.5 5.3 37 80-116 22-58 (260)
390 PRK13889 conjugal transfer rel 96.4 0.019 4.1E-07 60.2 9.6 129 70-213 351-487 (988)
391 cd03213 ABCG_EPDR ABCG transpo 96.4 0.02 4.4E-07 48.6 8.4 26 80-105 34-59 (194)
392 COG2401 ABC-type ATPase fused 96.4 0.0092 2E-07 55.2 6.4 44 62-105 371-433 (593)
393 PF02367 UPF0079: Uncharacteri 96.4 0.0058 1.2E-07 47.4 4.5 34 72-105 6-39 (123)
394 KOG0742 AAA+-type ATPase [Post 96.4 0.086 1.9E-06 48.9 12.5 27 80-106 383-409 (630)
395 TIGR01967 DEAH_box_HrpA ATP-de 96.3 0.0062 1.3E-07 65.1 6.0 39 68-106 69-107 (1283)
396 KOG0732 AAA+-type ATPase conta 96.3 0.06 1.3E-06 55.9 12.8 166 62-243 265-477 (1080)
397 PRK03846 adenylylsulfate kinas 96.3 0.005 1.1E-07 52.5 4.5 29 80-108 23-51 (198)
398 COG1936 Predicted nucleotide k 96.3 0.0032 6.9E-08 51.2 3.0 20 83-102 2-21 (180)
399 PRK13947 shikimate kinase; Pro 96.3 0.0035 7.6E-08 52.0 3.5 25 83-107 3-27 (171)
400 PF12775 AAA_7: P-loop contain 96.3 0.0047 1E-07 55.3 4.5 29 79-107 31-59 (272)
401 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0071 1.5E-07 52.8 5.6 37 80-116 19-55 (229)
402 cd00984 DnaB_C DnaB helicase C 96.3 0.012 2.6E-07 51.9 7.0 52 79-137 11-63 (242)
403 cd02020 CMPK Cytidine monophos 96.3 0.0033 7.1E-08 50.6 3.1 23 83-105 1-23 (147)
404 KOG1051 Chaperone HSP104 and r 96.3 0.062 1.3E-06 55.3 12.6 97 62-171 562-672 (898)
405 cd03217 ABC_FeS_Assembly ABC-t 96.3 0.017 3.6E-07 49.4 7.6 25 80-104 25-49 (200)
406 COG0563 Adk Adenylate kinase a 96.3 0.0032 7E-08 52.5 3.1 23 83-105 2-24 (178)
407 TIGR03263 guanyl_kin guanylate 96.3 0.0034 7.3E-08 52.6 3.2 25 81-105 1-25 (180)
408 COG1643 HrpA HrpA-like helicas 96.3 0.0063 1.4E-07 62.3 5.6 126 68-198 52-206 (845)
409 cd02023 UMPK Uridine monophosp 96.3 0.003 6.6E-08 53.8 3.0 23 83-105 1-23 (198)
410 TIGR03522 GldA_ABC_ATP gliding 96.3 0.019 4.1E-07 52.5 8.3 25 80-104 27-51 (301)
411 cd03233 ABC_PDR_domain1 The pl 96.3 0.03 6.6E-07 47.8 9.1 27 80-106 32-58 (202)
412 KOG3347 Predicted nucleotide k 96.3 0.0036 7.9E-08 49.4 3.0 25 81-105 7-31 (176)
413 COG1875 NYN ribonuclease and A 96.3 0.021 4.5E-07 52.1 8.2 131 65-198 227-389 (436)
414 COG1127 Ttg2A ABC-type transpo 96.3 0.014 3E-07 50.2 6.7 26 80-105 33-58 (263)
415 PRK05342 clpX ATP-dependent pr 96.3 0.0066 1.4E-07 57.6 5.4 46 62-107 71-134 (412)
416 COG1224 TIP49 DNA helicase TIP 96.3 0.015 3.3E-07 52.8 7.2 49 62-110 39-94 (450)
417 PRK06217 hypothetical protein; 96.3 0.0034 7.4E-08 52.8 3.1 24 83-106 3-26 (183)
418 cd02025 PanK Pantothenate kina 96.3 0.0031 6.8E-08 54.6 2.9 24 83-106 1-24 (220)
419 PRK12339 2-phosphoglycerate ki 96.3 0.004 8.7E-08 52.9 3.5 25 81-105 3-27 (197)
420 cd03300 ABC_PotA_N PotA is an 96.3 0.031 6.7E-07 48.9 9.2 26 80-105 25-50 (232)
421 cd02024 NRK1 Nicotinamide ribo 96.3 0.0033 7.1E-08 52.8 2.9 23 83-105 1-23 (187)
422 PRK14527 adenylate kinase; Pro 96.3 0.0043 9.3E-08 52.6 3.6 26 80-105 5-30 (191)
423 TIGR01448 recD_rel helicase, p 96.3 0.024 5.3E-07 58.0 9.6 114 80-208 337-464 (720)
424 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.0041 9E-08 53.8 3.5 24 80-103 30-53 (222)
425 PRK00300 gmk guanylate kinase; 96.3 0.0041 8.9E-08 53.3 3.5 27 80-106 4-30 (205)
426 TIGR00455 apsK adenylylsulfate 96.2 0.0081 1.7E-07 50.5 5.2 29 79-107 16-44 (184)
427 PF06309 Torsin: Torsin; Inte 96.2 0.0069 1.5E-07 46.8 4.3 44 62-105 25-77 (127)
428 PRK14530 adenylate kinase; Pro 96.2 0.0044 9.6E-08 53.6 3.7 25 81-105 3-27 (215)
429 PRK12678 transcription termina 96.2 0.012 2.6E-07 57.2 6.7 29 80-108 415-443 (672)
430 PRK11174 cysteine/glutathione 96.2 0.014 2.9E-07 58.8 7.6 26 80-105 375-400 (588)
431 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0035 7.6E-08 53.5 2.8 105 80-191 14-125 (199)
432 smart00072 GuKc Guanylate kina 96.2 0.005 1.1E-07 51.8 3.7 30 81-110 2-31 (184)
433 TIGR01313 therm_gnt_kin carboh 96.2 0.0033 7.2E-08 51.7 2.6 22 84-105 1-22 (163)
434 KOG0736 Peroxisome assembly fa 96.2 0.23 4.9E-06 49.9 15.3 45 64-108 403-458 (953)
435 COG1703 ArgK Putative periplas 96.2 0.01 2.2E-07 52.7 5.6 31 80-110 50-80 (323)
436 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0048 1E-07 54.7 3.8 26 83-108 1-26 (249)
437 COG4618 ArpD ABC-type protease 96.2 0.016 3.4E-07 55.1 7.2 25 79-103 360-384 (580)
438 COG3640 CooC CO dehydrogenase 96.2 0.0078 1.7E-07 51.4 4.7 38 83-120 2-39 (255)
439 PRK10751 molybdopterin-guanine 96.2 0.0071 1.5E-07 50.0 4.4 29 80-108 5-33 (173)
440 PRK05537 bifunctional sulfate 96.2 0.012 2.7E-07 58.2 6.8 47 61-107 368-418 (568)
441 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0049 1.1E-07 46.4 3.0 23 80-102 14-36 (107)
442 PRK13949 shikimate kinase; Pro 96.2 0.0051 1.1E-07 51.0 3.5 24 83-106 3-26 (169)
443 KOG0730 AAA+-type ATPase [Post 96.2 0.064 1.4E-06 52.6 11.3 87 63-169 185-288 (693)
444 TIGR00064 ftsY signal recognit 96.2 0.007 1.5E-07 54.2 4.6 36 80-116 71-106 (272)
445 COG0396 sufC Cysteine desulfur 96.2 0.05 1.1E-06 46.5 9.3 25 80-104 29-53 (251)
446 COG1124 DppF ABC-type dipeptid 96.2 0.0066 1.4E-07 52.2 4.1 25 80-104 32-56 (252)
447 PRK13900 type IV secretion sys 96.2 0.052 1.1E-06 50.1 10.4 93 79-176 158-252 (332)
448 COG1126 GlnQ ABC-type polar am 96.1 0.002 4.3E-08 54.3 1.0 24 80-103 27-50 (240)
449 CHL00060 atpB ATP synthase CF1 96.1 0.019 4.1E-07 55.2 7.5 55 80-137 160-214 (494)
450 PRK10078 ribose 1,5-bisphospho 96.1 0.0046 9.9E-08 52.2 3.1 26 81-106 2-27 (186)
451 PRK04328 hypothetical protein; 96.1 0.0097 2.1E-07 52.7 5.3 37 80-116 22-58 (249)
452 cd00464 SK Shikimate kinase (S 96.1 0.005 1.1E-07 50.0 3.2 22 84-105 2-23 (154)
453 PRK05439 pantothenate kinase; 96.1 0.013 2.9E-07 53.1 6.2 28 80-107 85-112 (311)
454 COG1119 ModF ABC-type molybden 96.1 0.034 7.4E-07 48.0 8.2 25 80-104 56-80 (257)
455 PRK06761 hypothetical protein; 96.1 0.0082 1.8E-07 53.7 4.7 28 81-108 3-30 (282)
456 PRK13975 thymidylate kinase; P 96.1 0.0055 1.2E-07 52.1 3.5 27 81-107 2-28 (196)
457 cd03289 ABCC_CFTR2 The CFTR su 96.1 0.033 7.1E-07 50.1 8.6 26 80-105 29-54 (275)
458 PRK13948 shikimate kinase; Pro 96.1 0.0064 1.4E-07 50.9 3.7 27 80-106 9-35 (182)
459 TIGR02655 circ_KaiC circadian 96.1 0.0099 2.2E-07 58.0 5.6 46 71-116 249-298 (484)
460 PRK13407 bchI magnesium chelat 96.1 0.0087 1.9E-07 55.1 4.9 44 62-105 8-53 (334)
461 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.027 5.8E-07 53.7 8.2 88 80-170 137-243 (449)
462 PRK14738 gmk guanylate kinase; 96.1 0.0054 1.2E-07 52.6 3.3 25 80-104 12-36 (206)
463 PRK13764 ATPase; Provisional 96.1 0.041 8.9E-07 54.5 9.7 85 80-177 256-342 (602)
464 COG1116 TauB ABC-type nitrate/ 96.1 0.0057 1.2E-07 52.9 3.4 24 80-103 28-51 (248)
465 PF08477 Miro: Miro-like prote 96.1 0.0057 1.2E-07 47.2 3.2 21 84-104 2-22 (119)
466 PRK08972 fliI flagellum-specif 96.0 0.019 4.1E-07 54.5 7.0 26 80-105 161-186 (444)
467 PRK09435 membrane ATPase/prote 96.0 0.015 3.1E-07 53.5 6.1 29 80-108 55-83 (332)
468 PRK15453 phosphoribulokinase; 96.0 0.0095 2.1E-07 52.9 4.7 28 80-107 4-31 (290)
469 PLN03187 meiotic recombination 96.0 0.026 5.7E-07 52.1 7.8 25 80-104 125-149 (344)
470 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.016 3.5E-07 47.3 5.9 40 65-104 81-125 (157)
471 PRK13826 Dtr system oriT relax 96.0 0.055 1.2E-06 57.2 11.0 124 75-213 391-522 (1102)
472 TIGR02238 recomb_DMC1 meiotic 96.0 0.03 6.4E-07 51.3 8.1 25 80-104 95-119 (313)
473 PRK13946 shikimate kinase; Pro 96.0 0.0068 1.5E-07 51.0 3.7 26 81-106 10-35 (184)
474 COG1428 Deoxynucleoside kinase 96.0 0.006 1.3E-07 51.4 3.1 26 81-106 4-29 (216)
475 TIGR01447 recD exodeoxyribonuc 96.0 0.076 1.6E-06 53.0 11.4 47 162-211 262-310 (586)
476 PLN02200 adenylate kinase fami 96.0 0.0063 1.4E-07 53.3 3.5 25 81-105 43-67 (234)
477 cd01135 V_A-ATPase_B V/A-type 96.0 0.04 8.6E-07 49.0 8.4 26 80-105 68-93 (276)
478 COG0378 HypB Ni2+-binding GTPa 96.0 0.0088 1.9E-07 49.7 4.0 35 82-116 14-48 (202)
479 PF13555 AAA_29: P-loop contai 96.0 0.0082 1.8E-07 40.2 3.2 24 82-105 24-47 (62)
480 smart00534 MUTSac ATPase domai 96.0 0.0033 7.2E-08 53.0 1.6 21 83-103 1-21 (185)
481 PRK05057 aroK shikimate kinase 96.0 0.0073 1.6E-07 50.2 3.6 26 81-106 4-29 (172)
482 PRK14531 adenylate kinase; Pro 96.0 0.007 1.5E-07 50.9 3.5 24 82-105 3-26 (183)
483 TIGR01193 bacteriocin_ABC ABC- 96.0 0.026 5.6E-07 58.1 8.3 25 80-104 499-523 (708)
484 KOG3928 Mitochondrial ribosome 95.9 0.16 3.5E-06 47.1 12.2 52 199-250 408-460 (461)
485 COG4778 PhnL ABC-type phosphon 95.9 0.013 2.8E-07 47.5 4.7 37 80-117 36-72 (235)
486 PF03029 ATP_bind_1: Conserved 95.9 0.008 1.7E-07 52.7 3.9 35 86-121 1-35 (238)
487 TIGR02915 PEP_resp_reg putativ 95.9 0.14 3.1E-06 49.5 13.0 44 62-105 139-186 (445)
488 TIGR02012 tigrfam_recA protein 95.9 0.0094 2E-07 54.4 4.4 36 80-115 54-89 (321)
489 PRK10416 signal recognition pa 95.9 0.01 2.2E-07 54.4 4.6 29 80-108 113-141 (318)
490 PRK14529 adenylate kinase; Pro 95.9 0.042 9.1E-07 47.5 8.1 23 84-106 3-25 (223)
491 PRK08533 flagellar accessory p 95.9 0.012 2.5E-07 51.5 4.8 37 80-116 23-59 (230)
492 PF13521 AAA_28: AAA domain; P 95.9 0.0056 1.2E-07 50.4 2.7 21 84-104 2-22 (163)
493 PRK09825 idnK D-gluconate kina 95.9 0.008 1.7E-07 50.1 3.6 26 81-106 3-28 (176)
494 TIGR03880 KaiC_arch_3 KaiC dom 95.9 0.014 2.9E-07 50.9 5.2 36 80-115 15-50 (224)
495 TIGR00176 mobB molybdopterin-g 95.9 0.0096 2.1E-07 48.5 3.9 26 83-108 1-26 (155)
496 PRK14532 adenylate kinase; Pro 95.9 0.0065 1.4E-07 51.3 3.1 22 84-105 3-24 (188)
497 PF00005 ABC_tran: ABC transpo 95.9 0.0073 1.6E-07 48.0 3.2 26 80-105 10-35 (137)
498 PRK10875 recD exonuclease V su 95.9 0.082 1.8E-06 52.9 11.1 120 80-207 166-312 (615)
499 TIGR01069 mutS2 MutS2 family p 95.9 0.022 4.7E-07 58.6 7.3 24 81-104 322-345 (771)
500 COG2019 AdkA Archaeal adenylat 95.9 0.008 1.7E-07 48.5 3.2 25 81-105 4-28 (189)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.3e-57 Score=474.63 Aligned_cols=379 Identities=40% Similarity=0.664 Sum_probs=328.5
Q ss_pred CCCcEEEeEeeecCcccccccccchHHHHHHHHhh-cHHHHHHHHHHHHHHhcccCCccCC-------------------
Q 040862 2 VYAQIAIPVFYRVDPSHVRKQIGSFGVSFSELEEK-FPEKMQRWRSALTEAANLSGFDSLQ------------------- 61 (381)
Q Consensus 2 ~~~~~~~pv~~~v~p~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~~~~~~~~~~~~------------------- 61 (381)
..|++|+||||+|||++||+|+|+|+++|.++.++ ..+.+++|++++.+++++.||.+..
T Consensus 96 ~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l 175 (1153)
T PLN03210 96 ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKL 175 (1153)
T ss_pred hcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999999997655 3466999999999999999988753
Q ss_pred --------CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEec--ccc---cc-
Q 040862 62 --------NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENV--REE---SQ- 123 (381)
Q Consensus 62 --------~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~---~~- 123 (381)
..+|||+.+++++..++. +.++|+|+||||+||||||+.+++++..+|+..+|+... ... ..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccc
Confidence 679999999999999886 788999999999999999999999999999988887431 100 00
Q ss_pred ----CCCChHHHHHHHHHHHhcc-CCCCCCHHHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 124 ----KPGGLASLQQKLLSEVLKD-VNVIPHIDLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 124 ----~~~~~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
.......+...++..+... .........+++.+.++++||||||+|+..+++.+.....+.++|++||||||+..
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 0011233455555555544 22233456688889999999999999999999999887777789999999999874
Q ss_pred ------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHHHHHHH
Q 040862 199 ------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENAIKKLK 266 (381)
Q Consensus 199 ------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~~~~l~ 266 (381)
++.|+.++|++||.+.+++...++....+++.+++++|+|+||||+.+|++|+.++..+|...+.++.
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78899999999999999987766667788999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHhhhcCCCh-hhhhhhhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHhhCCceeEcCCCcEEecHHH
Q 040862 267 NFLHQNILDVLKISYDGLDN-DEKNIFLDVACFFKGEDVYLAKKFLEASGFYPEIGISILVDKSLIAINPYNKITMHDLL 345 (381)
Q Consensus 267 ~~~~~~~~~~l~~~~~~L~~-~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Li~~~~~~~~~~H~lv 345 (381)
..++..+..+++.||+.|++ .+|.+|+++|||+.+.+.+.+..++...+...+..++.|++++||+.. .+++.||+++
T Consensus 416 ~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl 494 (1153)
T PLN03210 416 NGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLL 494 (1153)
T ss_pred hCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHH
Confidence 88888999999999999976 599999999999999999888888888888888899999999999987 6789999999
Q ss_pred HHHHHHHHhhhcCCCCCccccCChhhHHHHHhhCcC
Q 040862 346 QELGREIVRQESTNPGNRTRLWHHEDIYEVLAYNRG 381 (381)
Q Consensus 346 ~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~l~~~~~ 381 (381)
|++|++++++++..|++|+++|++.+|.++|.+++|
T Consensus 495 ~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g 530 (1153)
T PLN03210 495 QEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTG 530 (1153)
T ss_pred HHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcc
Confidence 999999999988889999999999999999998876
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=312.71 Aligned_cols=285 Identities=28% Similarity=0.403 Sum_probs=244.1
Q ss_pred cchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhh---hcccccceEEEEeccccccCCCChHHHHHHHHHHH
Q 040862 65 VGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNR---ISRNFEGSCFLENVREESQKPGGLASLQQKLLSEV 139 (381)
Q Consensus 65 vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 139 (381)
||.+.-++.+.+.|. +..+++|+||||+||||||+++.++ ++.+|+..+|++ ++. ......+...++..+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHHHh
Confidence 999999999999988 6689999999999999999999985 567899999997 333 677888999999988
Q ss_pred hccCCCCCC------HHHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc-------------CC
Q 040862 140 LKDVNVIPH------IDLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ-------------MK 200 (381)
Q Consensus 140 ~~~~~~~~~------~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~-------------l~ 200 (381)
+........ ...+.+.|.++|++||+||||+..+|+.+...++....||+|++|||+.. ++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 774222211 12288889999999999999999999999988887778899999999986 88
Q ss_pred CCCHHHHHHHHHHhhccCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHHhccC-CHHHHHHHHHHHHhc-------ccc
Q 040862 201 GFGDDHALELFNRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILGCYLFER-KREVWENAIKKLKNF-------LHQ 271 (381)
Q Consensus 201 ~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~~~~~~~~~~~l~~~-------~~~ 271 (381)
.|+++|||+||.+.++... ...+..++.+++++++|+|+|||+..+|..++.+ +..+|..+.+.+... ...
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 8999999999999997763 3334478999999999999999999999999884 556899999987664 135
Q ss_pred cHHHHHHhhhcCCChhhhhhhhhhhcccCC--cCHHHHHHHHHHcCCC------------hhhhHHHHhhCCceeEcCC-
Q 040862 272 NILDVLKISYDGLDNDEKNIFLDVACFFKG--EDVYLAKKFLEASGFY------------PEIGISILVDKSLIAINPY- 336 (381)
Q Consensus 272 ~~~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~~Li~~~~~- 336 (381)
.+..++..||+.|+++.|.||+|||.||++ ++.+.+...|.++|+. ....++.|++++|+.....
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 688999999999999999999999999987 6779999999999854 3457999999999986532
Q ss_pred ---CcEEecHHHHHHHHHHHh
Q 040862 337 ---NKITMHDLLQELGREIVR 354 (381)
Q Consensus 337 ---~~~~~H~lv~~~~~~~~~ 354 (381)
..+.|||++|++|...+.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhc
Confidence 468999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-35 Score=268.27 Aligned_cols=247 Identities=30% Similarity=0.497 Sum_probs=188.6
Q ss_pred hhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhh--hcccccceEEEEeccccccCCCChHHHHHHHHHHHh
Q 040862 67 VESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNR--ISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVL 140 (381)
Q Consensus 67 R~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 140 (381)
|+.++++|.+.|. +.++|+|+|+||+||||||.+++++ .+.+|+.++|+. +.. ......+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~----~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSK----NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-----SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-ccc----cccccccccccccccc
Confidence 7889999999887 5899999999999999999999998 888998777765 332 2334778888888887
Q ss_pred ccCC---CCCCH----HHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc-------------CC
Q 040862 141 KDVN---VIPHI----DLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ-------------MK 200 (381)
Q Consensus 141 ~~~~---~~~~~----~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~-------------l~ 200 (381)
.... ..... ..+.+.+.++++||||||+++...++.+...+.....+++||+|||+.. ++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7632 22222 3378888999999999999999998888776665567899999999974 89
Q ss_pred CCCHHHHHHHHHHhhccCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHHhcc-CCHHHHHHHHHHHHhcc------ccc
Q 040862 201 GFGDDHALELFNRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILGCYLFE-RKREVWENAIKKLKNFL------HQN 272 (381)
Q Consensus 201 ~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~-~~~~~~~~~~~~l~~~~------~~~ 272 (381)
+|+.+|+.+||.+.++... ...+..++.+++|++.|+|+||||+.+|++++. .+...|...++.+.... ..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999986554 233344577899999999999999999999954 25567888887766543 367
Q ss_pred HHHHHHhhhcCCChhhhhhhhhhhcccCC--cCHHHHHHHHHHcCCCh
Q 040862 273 ILDVLKISYDGLDNDEKNIFLDVACFFKG--EDVYLAKKFLEASGFYP 318 (381)
Q Consensus 273 ~~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~~ 318 (381)
+..++..+|+.|+++.|.||.+||+||.+ ++.+.+..+|.++++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999987 56899999998876543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.83 E-value=2.8e-18 Score=179.91 Aligned_cols=296 Identities=15% Similarity=0.166 Sum_probs=194.1
Q ss_pred cCCCcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 59 SLQNELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 59 ~~~~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..+..++-|+..++.|... ...++++|+||+|.||||++.+++... +.++|+. +... +.+...+...++..
T Consensus 11 ~~~~~~~~R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~---d~~~~~f~~~l~~~ 81 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDES---DNQPERFASYLIAA 81 (903)
T ss_pred CCccccCcchHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcc---cCCHHHHHHHHHHH
Confidence 3447889999888888753 368899999999999999999998643 2466764 4432 34445555555555
Q ss_pred HhccCCC-------------CCCHH----HHHHHhC--CCeEEEEEeCCCChh--hHHHHH-hccCCCCCCCeEEEEecc
Q 040862 139 VLKDVNV-------------IPHID----LNFRRLS--RRKVLIVLDDVTCFN--QIESLV-GSLDRLLPESRILITTRN 196 (381)
Q Consensus 139 ~~~~~~~-------------~~~~~----~l~~~l~--~~~~LlvlDdv~~~~--~~~~l~-~~~~~~~~~~~iliTsr~ 196 (381)
+...... ..... .+...+. +.+++|||||++..+ .+..++ ..+....++.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 5321100 01111 1333333 689999999996532 222222 222223466788899998
Q ss_pred cc---------------CC----CCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHH
Q 040862 197 KQ---------------MK----GFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREV 257 (381)
Q Consensus 197 ~~---------------l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~ 257 (381)
.. +. +|+.+|+.++|....... . ..+.+.++++.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 53 33 899999999998665321 1 24668899999999999999988776543210
Q ss_pred HHHHHHHHHhcccccHHHHHH-hhhcCCChhhhhhhhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHhhCCceeE-cC
Q 040862 258 WENAIKKLKNFLHQNILDVLK-ISYDGLDNDEKNIFLDVACFFKGEDVYLAKKFLEASGFYPEIGISILVDKSLIAI-NP 335 (381)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~l~-~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Li~~-~~ 335 (381)
.......+.......+...+. ..++.|+++.+.++..+|+++ .++.+.+..+.+ ..+....++.|.+.+++.. .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 236 LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeec
Confidence 011111111112344665544 448999999999999999985 788777666664 2345788999999999653 22
Q ss_pred --CCcEEecHHHHHHHHHHHhhhcCCCCCccccCChhhHHHHH
Q 040862 336 --YNKITMHDLLQELGREIVRQESTNPGNRTRLWHHEDIYEVL 376 (381)
Q Consensus 336 --~~~~~~H~lv~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~l 376 (381)
..+|++|++++++++..+..+ .+..+..+ |......+
T Consensus 313 ~~~~~yr~H~L~r~~l~~~l~~~--~~~~~~~l--h~raa~~~ 351 (903)
T PRK04841 313 DSGEWFRYHPLFASFLRHRCQWE--LAQELPEL--HRAAAEAW 351 (903)
T ss_pred CCCCEEehhHHHHHHHHHHHHhc--CchHHHHH--HHHHHHHH
Confidence 247999999999999998654 34445554 55555444
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.76 E-value=1.8e-16 Score=154.05 Aligned_cols=296 Identities=15% Similarity=0.144 Sum_probs=198.9
Q ss_pred CccCCCcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 57 FDSLQNELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 57 ~~~~~~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.|+.+.+.|-|...++.|.+.. +.+++.|+.|+|.|||||+.+++.. ...-..+.|+.-. ..+.+...++..++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlsld----e~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLD----ESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecC----CccCCHHHHHHHHH
Confidence 4556688999998888877644 4899999999999999999999983 3344567887622 22667777888877
Q ss_pred HHHhccCCC-CCC------------H----HHHHHHhC--CCeEEEEEeCCCChh------hHHHHHhccCCCCCCCeEE
Q 040862 137 SEVLKDVNV-IPH------------I----DLNFRRLS--RRKVLIVLDDVTCFN------QIESLVGSLDRLLPESRIL 191 (381)
Q Consensus 137 ~~~~~~~~~-~~~------------~----~~l~~~l~--~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~~~~il 191 (381)
..+....+. .+. + ..+...+. .+|+.+||||..-.. .++.++... .++..++
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lv 164 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLV 164 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEE
Confidence 777643111 111 1 11333333 479999999985322 244444432 3677999
Q ss_pred EEecccc-------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcc
Q 040862 192 ITTRNKQ-------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE 252 (381)
Q Consensus 192 iTsr~~~-------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~ 252 (381)
+|||+.. .=.|+.+|+.++|...... .. ....++.+++.++|++-|+..++-.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~L----d~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-PL----DAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-CC----ChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9999987 2258999999999876521 11 2355889999999999999998888873
Q ss_pred -CCHHHHHHHHHHHHhcccccHH-HHHHhhhcCCChhhhhhhhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHhhCCc
Q 040862 253 -RKREVWENAIKKLKNFLHQNIL-DVLKISYDGLDNDEKNIFLDVACFFKGEDVYLAKKFLEASGFYPEIGISILVDKSL 330 (381)
Q Consensus 253 -~~~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~L 330 (381)
.+.......++ .. ...+. -+.+..++.||++.+.++..+|++ +.|+-+....+.+ ..+....++.|.+++|
T Consensus 240 ~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg--~~ng~amLe~L~~~gL 312 (894)
T COG2909 240 NTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTG--EENGQAMLEELERRGL 312 (894)
T ss_pred CCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhc--CCcHHHHHHHHHhCCC
Confidence 22222111111 11 11122 234456799999999999999999 3455555444443 2356678999999999
Q ss_pred ee--E-cCCCcEEecHHHHHHHHHHHhhhcCCCCCccccCChhhHHHHHh
Q 040862 331 IA--I-NPYNKITMHDLLQELGREIVRQESTNPGNRTRLWHHEDIYEVLA 377 (381)
Q Consensus 331 i~--~-~~~~~~~~H~lv~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~l~ 377 (381)
.- . +++++|++|+++.+|.+.+...+. +.....+ |...++..+
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~~~--~~~~~~l--H~~Aa~w~~ 358 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQREL--AARLKEL--HRAAAEWFA 358 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhcccc--CCchhHH--HHHHHHHHH
Confidence 54 2 336689999999999999988752 3333443 555544443
No 6
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.69 E-value=7.3e-16 Score=157.09 Aligned_cols=306 Identities=16% Similarity=0.239 Sum_probs=187.1
Q ss_pred cccchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC---hHHHHHH
Q 040862 63 ELVGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG---LASLQQK 134 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~---~~~l~~~ 134 (381)
.++||+.+++.|...+. ...++.+.|.+|||||+|++++...+.+.+. .++...-........ +.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCchHHHHHHHHH
Confidence 47999999999999987 5779999999999999999999997766522 111110000010222 2222333
Q ss_pred HHHHHhccCC-------------------CC---------------CCH-------HH---------HHHHh-CCCeEEE
Q 040862 135 LLSEVLKDVN-------------------VI---------------PHI-------DL---------NFRRL-SRRKVLI 163 (381)
Q Consensus 135 l~~~~~~~~~-------------------~~---------------~~~-------~~---------l~~~l-~~~~~Ll 163 (381)
+..++..+.. .. +.. .. +.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3333311100 00 000 00 11122 3469999
Q ss_pred EEeCCCC-hh----hHHHHHhccC--CC-CCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCC
Q 040862 164 VLDDVTC-FN----QIESLVGSLD--RL-LPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLV 221 (381)
Q Consensus 164 vlDdv~~-~~----~~~~l~~~~~--~~-~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~ 221 (381)
|+||+.. +. .++.++.... .. ......+.|.+... |.||+..+...++..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 9999942 22 2444444332 00 01112222333221 99999999999999887542222
Q ss_pred ChhHHHHHHHHHHHhCCChHHHHHHHHHhccC-------CHHHHHHHHHHHHhc-ccccHHHHHHhhhcCCChhhhhhhh
Q 040862 222 DVDYKELSDKVINYAQGVPLALKILGCYLFER-------KREVWENAIKKLKNF-LHQNILDVLKISYDGLDNDEKNIFL 293 (381)
Q Consensus 222 ~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-------~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~L~~~~~~~l~ 293 (381)
..+..+.+++++.|||+++..+...+... +...|......+... ..+++-..+...++.||+..++++.
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 24678999999999999999999888652 334444433333221 1123455688999999999999999
Q ss_pred hhhcccCCcCHHHHHHHHHHcCCCh-hhhHHHHhhCCceeEcC-------C--C-cEEecHHHHHHHHHHHhhhcCCCCC
Q 040862 294 DVACFFKGEDVYLAKKFLEASGFYP-EIGISILVDKSLIAINP-------Y--N-KITMHDLLQELGREIVRQESTNPGN 362 (381)
Q Consensus 294 ~la~~~~~~~~~~l~~~~~~~~~~~-~~~l~~L~~~~Li~~~~-------~--~-~~~~H~lv~~~~~~~~~~e~~~~~~ 362 (381)
.+||++..|+.+.+..++....... ...++.|....++..++ . . +-+.|+++|+.+.....++ +
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-----~ 390 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-----Q 390 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh-----h
Confidence 9999999999999999987533333 33444555555443221 1 1 2256888888887665432 3
Q ss_pred ccccCChhhHHHHHhhCc
Q 040862 363 RTRLWHHEDIYEVLAYNR 380 (381)
Q Consensus 363 ~~~l~~~~~~~~~l~~~~ 380 (381)
|.. .|..|+..|..+.
T Consensus 391 rq~--~H~~i~~lL~~~~ 406 (849)
T COG3899 391 RQY--LHLRIGQLLEQNI 406 (849)
T ss_pred HHH--HHHHHHHHHHHhC
Confidence 333 4999999887653
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.56 E-value=1.3e-12 Score=124.23 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=156.5
Q ss_pred CccCCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChH
Q 040862 57 FDSLQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLA 129 (381)
Q Consensus 57 ~~~~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~ 129 (381)
....|+.|+||+.++++|...+. .++.+.|+|++|+|||++++.+++.+.... ...+.+.++.. ..+..
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~----~~~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI----DRTRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc----CCCHH
Confidence 34456899999999999999984 346789999999999999999999876543 22233333332 33456
Q ss_pred HHHHHHHHHHhcc-CC-CCCCHHH----HHHHhC--CCeEEEEEeCCCChh------hHHHHHhccCCCC-CCCeEEEEe
Q 040862 130 SLQQKLLSEVLKD-VN-VIPHIDL----NFRRLS--RRKVLIVLDDVTCFN------QIESLVGSLDRLL-PESRILITT 194 (381)
Q Consensus 130 ~l~~~l~~~~~~~-~~-~~~~~~~----l~~~l~--~~~~LlvlDdv~~~~------~~~~l~~~~~~~~-~~~~iliTs 194 (381)
.+...++..+... .+ ....... +.+.+. +++++||||+++... .+..++....... .+..+|.++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 6777777777652 11 1112222 444443 467999999997542 3445544332221 122345554
Q ss_pred cccc-------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh----CCChHHHHHHHHHhc
Q 040862 195 RNKQ-------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYA----QGVPLALKILGCYLF 251 (381)
Q Consensus 195 r~~~-------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~~~~l~ 251 (381)
.... +++++.++..+++..++..........++.++.+++.+ |..+.++..+-....
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4321 88999999999998876322111112234555565555 335566655433221
Q ss_pred -----cC---CHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhccc----CCcCHHHHHH----HHHHcC
Q 040862 252 -----ER---KREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFF----KGEDVYLAKK----FLEASG 315 (381)
Q Consensus 252 -----~~---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~----~~~~~~~l~~----~~~~~~ 315 (381)
+. +...+....+.. -...+...+..||...+.++..++... ..+....+.. ++..-+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 233333333322 133345668899999999988877553 2344433332 222222
Q ss_pred CC------hhhhHHHHhhCCceeE
Q 040862 316 FY------PEIGISILVDKSLIAI 333 (381)
Q Consensus 316 ~~------~~~~l~~L~~~~Li~~ 333 (381)
.. ....++.|...|||..
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEE
Confidence 21 2347999999999984
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=1.9e-13 Score=126.26 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=150.1
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
.+|+|++..++.+..++. ..+.+.|+|++|+|||+||+.+++.+...+ ........ ..... ...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~----~~~~~~~~----~~~~~-l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI----RITSGPAL----EKPGD-LAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe----EEEecccc----cChHH-HHH
Confidence 789999999999987774 356789999999999999999999875432 11111111 00011 111
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCC------------------CCCCCeEE-EE
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDR------------------LLPESRIL-IT 193 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~------------------~~~~~~il-iT 193 (381)
+...+ ....+|+||+++... ..+.+...+.. ..+...+| .|
T Consensus 96 -----------------~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 96 -----------------ILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred -----------------HHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 11112 234578888886432 11111111100 01223333 44
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWE 259 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~ 259 (381)
++... +++++.++..+++.+.+...... ..++.+..|++.|+|.|..+..+...+. .|.
T Consensus 158 ~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a 230 (328)
T PRK00080 158 TRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFA 230 (328)
T ss_pred CCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHH
Confidence 44322 78999999999999887544322 2357789999999999976655554431 111
Q ss_pred HHHH--HHHhcccccHHHHHHhhhcCCChhhhhhhh-hhhcccC-CcCHHHHHHHHHHcCCChhhhHH-HHhhCCceeEc
Q 040862 260 NAIK--KLKNFLHQNILDVLKISYDGLDNDEKNIFL-DVACFFK-GEDVYLAKKFLEASGFYPEIGIS-ILVDKSLIAIN 334 (381)
Q Consensus 260 ~~~~--~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~-~la~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Li~~~ 334 (381)
.... .+....-......+...+..|++..+.++. .+..|.. ++..+.+...++.+....+..++ .|++.+||+..
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 231 QVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 1000 000000112234455667789998898886 5556644 57888888888887777787888 99999999877
Q ss_pred CCCcE
Q 040862 335 PYNKI 339 (381)
Q Consensus 335 ~~~~~ 339 (381)
+.|+.
T Consensus 311 ~~gr~ 315 (328)
T PRK00080 311 PRGRV 315 (328)
T ss_pred CchHH
Confidence 66653
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.52 E-value=9e-14 Score=122.17 Aligned_cols=174 Identities=19% Similarity=0.287 Sum_probs=95.9
Q ss_pred ccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHH------
Q 040862 64 LVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKL------ 135 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l------ 135 (381)
|+||+.|++.|.+.+. ..+.++|+|+.|+|||+|++.+.+...+.....+|+...... .......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~------~~~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEES------NESSLRSFIEETSL 74 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccch------hhhHHHHHHHHHHH
Confidence 8999999999999998 378999999999999999999999875443334444322211 11111111
Q ss_pred ----HHHHhccC--------------CCCCCHHHHHHHhC--CCeEEEEEeCCCChh-------h-HHH---HHhccCCC
Q 040862 136 ----LSEVLKDV--------------NVIPHIDLNFRRLS--RRKVLIVLDDVTCFN-------Q-IES---LVGSLDRL 184 (381)
Q Consensus 136 ----~~~~~~~~--------------~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-------~-~~~---l~~~~~~~ 184 (381)
...+.... .....+..+.+.+. +++++||+||++... . +.. +......
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~- 153 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS- 153 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-
Confidence 11111110 11222333444444 245999999996544 1 222 2222222
Q ss_pred CCCCeEEEEecccc--------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHH
Q 040862 185 LPESRILITTRNKQ--------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 244 (381)
Q Consensus 185 ~~~~~iliTsr~~~--------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 244 (381)
..+..+++++.... +++|+.+++.+++.......... +..++..++++..++|+|..|.
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 23334444443221 99999999999998865333111 2246778999999999999986
Q ss_pred H
Q 040862 245 I 245 (381)
Q Consensus 245 ~ 245 (381)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 5
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.51 E-value=6.2e-13 Score=121.86 Aligned_cols=244 Identities=19% Similarity=0.221 Sum_probs=146.5
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
.+|+|++..++.|..++. ..+.+.++|++|+|||+||+.+++.+...+ ........ .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEeccchh----cCchhHHH-
Confidence 579999999999998875 245689999999999999999998775432 11111110 11111111
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccC-------------------CCCCCCeEEEE
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLD-------------------RLLPESRILIT 193 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~-------------------~~~~~~~iliT 193 (381)
.+. .+ +...+|++|+++... ..+.+...+. ...+.+-|..|
T Consensus 75 ~l~-----------------~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILT-----------------NL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHH-----------------hc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 111 11 234577888875322 1122221110 00122334445
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWE 259 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~ 259 (381)
++... +++++.++..+++.+.+...... ..++.+..|++.|+|.|..+..++..+.. ..
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~-----~a 209 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRD-----FA 209 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHH-----HH
Confidence 55421 88999999999999887543322 23577889999999999877555544310 00
Q ss_pred HHHHH--HHhcccccHHHHHHhhhcCCChhhhhhhhhh-hcccC-CcCHHHHHHHHHHcCCChhhhHH-HHhhCCceeEc
Q 040862 260 NAIKK--LKNFLHQNILDVLKISYDGLDNDEKNIFLDV-ACFFK-GEDVYLAKKFLEASGFYPEIGIS-ILVDKSLIAIN 334 (381)
Q Consensus 260 ~~~~~--l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~l-a~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Li~~~ 334 (381)
..... .....-......+...+..+++..+.++..+ +.+.. +++...+...++.+....+..++ .|++++||+..
T Consensus 210 ~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 00000 0000001112224556788888888888744 55543 47788888888887777788888 69999999876
Q ss_pred CCCcE
Q 040862 335 PYNKI 339 (381)
Q Consensus 335 ~~~~~ 339 (381)
+.|++
T Consensus 290 ~~g~~ 294 (305)
T TIGR00635 290 PRGRI 294 (305)
T ss_pred Cchhh
Confidence 66654
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=7.3e-11 Score=111.01 Aligned_cols=265 Identities=16% Similarity=0.150 Sum_probs=151.5
Q ss_pred cCCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhccccc-----ceEEEEeccccccCCCC
Q 040862 59 SLQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFE-----GSCFLENVREESQKPGG 127 (381)
Q Consensus 59 ~~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 127 (381)
..|+.|+||+.++++|...+. ..+.+.|+|++|+|||++++.+++.+..... ..+.+.++.. ...
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~----~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI----LDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC----CCC
Confidence 345789999999999999885 3468999999999999999999987653322 2333333332 334
Q ss_pred hHHHHHHHHHHHhc---cCC-CCCC----HHHHHHHhC--CCeEEEEEeCCCChh-----hHHHHHhcc--CCC-CCCCe
Q 040862 128 LASLQQKLLSEVLK---DVN-VIPH----IDLNFRRLS--RRKVLIVLDDVTCFN-----QIESLVGSL--DRL-LPESR 189 (381)
Q Consensus 128 ~~~l~~~l~~~~~~---~~~-~~~~----~~~l~~~l~--~~~~LlvlDdv~~~~-----~~~~l~~~~--~~~-~~~~~ 189 (381)
...+...++..+.. ..+ .... ...+.+.+. +++++||||+++... .+..+.... ... +.+..
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 56677777777642 111 1111 222444443 568999999997651 233333321 111 12334
Q ss_pred EEEEecccc-------------------CCCCCHHHHHHHHHHhhcc---CCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 190 ILITTRNKQ-------------------MKGFGDDHALELFNRHAFR---QNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 190 iliTsr~~~-------------------l~~L~~~ea~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+|.++.... ++|++.++..+++..++.. .....++.-+.+..++..+.|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 444443221 7889999999999888631 222233333455567777789985543322
Q ss_pred HHhc-----c----CCHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccC----CcCHHHHHH----H
Q 040862 248 CYLF-----E----RKREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFK----GEDVYLAKK----F 310 (381)
Q Consensus 248 ~~l~-----~----~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~----~~~~~~l~~----~ 310 (381)
.... . -+.+.+....+.. -.......+..||...+.++..++.... .+....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2211 0 1222222222222 1233456678899888888777663321 233332222 2
Q ss_pred HHHcCCC------hhhhHHHHhhCCceeEc
Q 040862 311 LEASGFY------PEIGISILVDKSLIAIN 334 (381)
Q Consensus 311 ~~~~~~~------~~~~l~~L~~~~Li~~~ 334 (381)
+...+.. ....++.|...|||+..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2221211 23478999999999854
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=5e-11 Score=107.23 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=102.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCH---HHHHH--
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI---DLNFR-- 154 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~l~~-- 154 (381)
+.+.++|+|++|+|||||++.++..+...-...+++... ..+..++...++..++......... ..+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998765321111222111 2345567777776665432221111 11222
Q ss_pred ---HhCCCeEEEEEeCCCChh--hHHHHH---hccCCCCCCCeEEEEecccc---------------------CCCCCHH
Q 040862 155 ---RLSRRKVLIVLDDVTCFN--QIESLV---GSLDRLLPESRILITTRNKQ---------------------MKGFGDD 205 (381)
Q Consensus 155 ---~l~~~~~LlvlDdv~~~~--~~~~l~---~~~~~~~~~~~iliTsr~~~---------------------l~~L~~~ 205 (381)
...+++.+||+||++... .++.+. ...........|++|..... +++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 225688999999997643 334332 21111122234556554221 8999999
Q ss_pred HHHHHHHHhhccCCC--CChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 206 HALELFNRHAFRQNL--VDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 206 ea~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
|..+++...+..... .....++.++.|++.|+|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999877643321 122346789999999999999999888776
No 13
>PF05729 NACHT: NACHT domain
Probab=99.27 E-value=4.9e-11 Score=98.89 Aligned_cols=131 Identities=21% Similarity=0.348 Sum_probs=78.8
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccccc-----ceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHH-HH
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFE-----GSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNF-RR 155 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~-~~ 155 (381)
|++.|+|.+|+||||+++.++..+..... ..+++...+.... ......+...+............. .+. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIAPIEE--LLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchhhhHH--HHHHHH
Confidence 58999999999999999999987655432 2344444444333 111123333333332222111111 111 22
Q ss_pred hCCCeEEEEEeCCCChhh---------HHHHHhcc-CC-CCCCCeEEEEecccc---------------CCCCCHHHHHH
Q 040862 156 LSRRKVLIVLDDVTCFNQ---------IESLVGSL-DR-LLPESRILITTRNKQ---------------MKGFGDDHALE 209 (381)
Q Consensus 156 l~~~~~LlvlDdv~~~~~---------~~~l~~~~-~~-~~~~~~iliTsr~~~---------------l~~L~~~ea~~ 209 (381)
...++++||||++|+... +..++..+ .. ..+++++++|+|... +.+|+.++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 346899999999965432 22223222 22 257899999999875 88899999998
Q ss_pred HHHHhh
Q 040862 210 LFNRHA 215 (381)
Q Consensus 210 l~~~~~ 215 (381)
++.+..
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 887654
No 14
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.24 E-value=1.3e-11 Score=111.90 Aligned_cols=277 Identities=21% Similarity=0.270 Sum_probs=187.9
Q ss_pred HHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-CCCCCCHHHHH
Q 040862 75 ESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-VNVIPHIDLNF 153 (381)
Q Consensus 75 ~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~l~ 153 (381)
...+...+.+.++|++||||||++-++.. ++..|...+++.+.....+ + ..+...+...++-. .+....++.+.
T Consensus 8 ~~~~~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-~---~~v~~~~ag~~gl~~~~g~~~~~~~~ 82 (414)
T COG3903 8 RDLLTALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-P---ALVFPTLAGALGLHVQPGDSAVDTLV 82 (414)
T ss_pred hhhhhhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc-h---hHhHHHHHhhcccccccchHHHHHHH
Confidence 34444689999999999999999999999 8888999998888876554 2 22222222222222 22233455677
Q ss_pred HHhCCCeEEEEEeCCCChh-hHHHHHhccCCCCCCCeEEEEecccc---------CCCCCHH-HHHHHHHHhhccCC---
Q 040862 154 RRLSRRKVLIVLDDVTCFN-QIESLVGSLDRLLPESRILITTRNKQ---------MKGFGDD-HALELFNRHAFRQN--- 219 (381)
Q Consensus 154 ~~l~~~~~LlvlDdv~~~~-~~~~l~~~~~~~~~~~~iliTsr~~~---------l~~L~~~-ea~~l~~~~~~~~~--- 219 (381)
....+++.++++||..... .-..+...+....+...++.|+|+.. +++|+.. ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 7888899999999985543 23334444444466678899999876 7777765 68888776653222
Q ss_pred CCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHHHHH-HHh---------cccccHHHHHHhhhcCCChhhh
Q 040862 220 LVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENAIKK-LKN---------FLHQNILDVLKISYDGLDNDEK 289 (381)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~~~~-l~~---------~~~~~~~~~l~~~~~~L~~~~~ 289 (381)
............|+++.+|.|++|..+++..+.-........++. +.. ....+....+..|+.-|+..++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 222223466888999999999999999998877544443333332 111 1134567788899999999999
Q ss_pred hhhhhhhcccCCcCHHHHHHHHHHcCC-----ChhhhHHHHhhCCceeEcC---CCcEEecHHHHHHHHHHHhhh
Q 040862 290 NIFLDVACFFKGEDVYLAKKFLEASGF-----YPEIGISILVDKSLIAINP---YNKITMHDLLQELGREIVRQE 356 (381)
Q Consensus 290 ~~l~~la~~~~~~~~~~l~~~~~~~~~-----~~~~~l~~L~~~~Li~~~~---~~~~~~H~lv~~~~~~~~~~e 356 (381)
..+..++.|...|.............. ..-..+..|++++++...+ .-+|+.-+-++.|+-+.+.+.
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988888743333322221 2334677899999987543 335777777788877777654
No 15
>PF14516 AAA_35: AAA-like domain
Probab=99.15 E-value=4.3e-08 Score=90.46 Aligned_cols=186 Identities=13% Similarity=0.218 Sum_probs=115.3
Q ss_pred CCCcccchhhHHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecccccc-CCCChHHHHHHHHH
Q 040862 60 LQNELVGVESRVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQ-KPGGLASLQQKLLS 137 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~l~~ 137 (381)
...-.|+|...-+++.+.+. .+..+.|.|+..+|||+|+..+.+...+. ...+.+.++..... ...+...+.+.++.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHC-CCEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 33566899966666666665 59999999999999999999999887654 33333444554322 23456666666665
Q ss_pred HHhccCCCCCC--------------HHH-HHHH-hC--CCeEEEEEeCCCChh----hHHHHHh---ccCCC---CC---
Q 040862 138 EVLKDVNVIPH--------------IDL-NFRR-LS--RRKVLIVLDDVTCFN----QIESLVG---SLDRL---LP--- 186 (381)
Q Consensus 138 ~~~~~~~~~~~--------------~~~-l~~~-l~--~~~~LlvlDdv~~~~----~~~~l~~---~~~~~---~~--- 186 (381)
.+...-..... +.. +.+. +. +++++|+||+++..- ..+.++. .+... .+
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 55544211111 111 2222 22 589999999996421 1122222 11110 11
Q ss_pred CCeEEEEecccc------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 187 ESRILITTRNKQ------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 187 ~~~iliTsr~~~------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
.-++++....+. |++++.+|...|+.+.... .. .+..+.|...++|||..+..++.
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHH
Confidence 112333222221 8999999999998876422 11 23499999999999999999999
Q ss_pred Hhcc
Q 040862 249 YLFE 252 (381)
Q Consensus 249 ~l~~ 252 (381)
.+..
T Consensus 242 ~l~~ 245 (331)
T PF14516_consen 242 LLVE 245 (331)
T ss_pred HHHH
Confidence 9965
No 16
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.06 E-value=1.8e-08 Score=92.95 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=103.4
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.+..++. ..+.+.|+|++|+|||++++.+++.+... +...+...+... ..... ........
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~----~~~~~-~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD----ERGID-VIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc----ccchH-HHHHHHHH
Confidence 578999999999999987 34568999999999999999999876433 221111111111 11111 11111111
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
.....+. ....+-++++|+++... ....+...+....+.+.+|+++.... ++++
T Consensus 92 ~~~~~~~----------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l 161 (319)
T PRK00440 92 FARTAPV----------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPL 161 (319)
T ss_pred HHhcCCC----------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCC
Confidence 1111000 01235689999996542 34455554444455677777764432 7889
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+.++...++...+...+.. ..++.++.+++.++|.+.-+..
T Consensus 162 ~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 162 KKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred CHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999998877544322 2256788999999999876533
No 17
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.06 E-value=1.2e-08 Score=94.88 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=103.8
Q ss_pred CcccchhhHHHHHHHhhCCC--cEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHH--HHHH
Q 040862 62 NELVGVESRVEEIESLLGAA--PLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQ--QKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~--~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~--~~l~ 136 (381)
.+|+|++..++.|..++... +.+.++|++|+|||++|+.+++.+.... ...+...+......... ..+. ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhhcCcchh
Confidence 67899999999999998843 3789999999999999999998765432 22222222221110000 0000 0000
Q ss_pred HHHhcc-CCCCCCHHHHHH---Hh------CCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc------
Q 040862 137 SEVLKD-VNVIPHIDLNFR---RL------SRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ------ 198 (381)
Q Consensus 137 ~~~~~~-~~~~~~~~~l~~---~l------~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~------ 198 (381)
...... .......+.+.. .. ...+-+||+||++... ....+...+....+.+++|+|+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 000001111111 11 1334589999997543 23334443333345677888775432
Q ss_pred --------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 --------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 --------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+.+++.++...++...+...... ..++.++.+++.++|++-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 78899999999998876544322 2357788999999998766543
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.02 E-value=3.3e-08 Score=94.17 Aligned_cols=163 Identities=24% Similarity=0.356 Sum_probs=99.6
Q ss_pred CcccchhhHHHH---HHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRVEE---IESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~~---l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.+|+|++..+.. |..++. ....+.|+|++|+||||||+.+++.....|. .+. . . ......+ +.++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~-a--~---~~~~~~i-r~ii 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS-A--V---TSGVKDL-REVI 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-c--c---cccHHHH-HHHH
Confidence 578999888766 777776 4557889999999999999999987654322 111 1 1 1111111 1111
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEE-E-ecccc--------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILI-T-TRNKQ-------------- 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ili-T-sr~~~-------------- 198 (381)
..... ....+++.+|+||+++.. ...+.++..+. .+..+++ + |.+..
T Consensus 82 ~~~~~------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 82 EEARQ------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred HHHHH------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceee
Confidence 11100 011347789999999754 34555555443 2333443 2 33321
Q ss_pred -CCCCCHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 040862 199 -MKGFGDDHALELFNRHAFRQNLV-DVDYKELSDKVINYAQGVPLALKILGCY 249 (381)
Q Consensus 199 -l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~ 249 (381)
+++++.++...++.+.+...... ....++..+.+++.|+|.|..+..+...
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78999999999998865331111 1233577888999999999877554443
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=3.9e-08 Score=96.98 Aligned_cols=172 Identities=19% Similarity=0.263 Sum_probs=106.9
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
+++||.+..++.|.+++.. .+.+.++|+.|+||||+|+.+++.+....... .. ..+....+..+...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~--------PCG~C~sCr~I~~G 85 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQ--------PCGVCRACREIDEG 85 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CC--------CCcccHHHHHHhcC
Confidence 6889999999999999983 45678999999999999999998653210000 00 00001111111100
Q ss_pred Hhc-----cCCCCCCHHH---HHHHh-----CCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-.. +......+++ +.+.. .++.-++|||+++... .+..|+..+.....+.++|++|.+..
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 000 0000011111 22211 2345589999998654 46777777766567788888887765
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH-HHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKI 245 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~ 245 (381)
+++++.++..+.+.+.+......- .++.+..|.+.++|... ++..
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999988775443222 25778889999999764 4444
No 20
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.01 E-value=4.4e-09 Score=88.97 Aligned_cols=158 Identities=22% Similarity=0.323 Sum_probs=88.0
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
++|||.+..+..+.-++. ....+.+|||||+||||||.-+++++...|. +.+... .....++..-
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~----~~sg~~----i~k~~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK----ITSGPA----IEKAGDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE----EEECCC------SCHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE----eccchh----hhhHHHHHHH
Confidence 899999999998876654 2457899999999999999999998876643 221111 1111222211
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccC--------CCCCC----------Ce-EEEE
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLD--------RLLPE----------SR-ILIT 193 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~--------~~~~~----------~~-iliT 193 (381)
...+ +++.+|++|+++... .-+.+++.+. ..+++ .. |=.|
T Consensus 96 ------------------l~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 96 ------------------LTNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp ------------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred ------------------HHhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1112 245588899997643 2233322211 11221 11 3346
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
||... ++..+.+|..+++.+.+..-.. +..++.+.+|+++|.|.|--..-+-+
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 66554 7788999999999877633322 23467899999999999965443333
No 21
>PLN03025 replication factor C subunit; Provisional
Probab=99.00 E-value=1e-07 Score=87.80 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=102.2
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|..++. ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+... ..+.. ..+.....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd----~~~~~-~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD----DRGID-VVRNKIKM 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc----cccHH-HHHHHHHH
Confidence 678999999999988877 4456889999999999999999987633 2332222211111 11111 12222211
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
........ ..++.-++|||+++... ....+...+....+.+++++++.... ++++
T Consensus 88 ~~~~~~~~---------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 88 FAQKKVTL---------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred HHhccccC---------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 11110000 01345699999997543 33444444443345677777765432 8889
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.++..+.+...+...+..- .++.++.+++.++|....+
T Consensus 159 ~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 99999998888775444222 2467888999999987544
No 22
>PRK04195 replication factor C large subunit; Provisional
Probab=99.00 E-value=4.1e-08 Score=95.44 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=103.1
Q ss_pred CcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKL 135 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 135 (381)
.+++|.+..++.|..++. ..+.+.|+|++|+||||+|..+++.+. +. +...+... ... ......+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielnasd----~r~-~~~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNASD----QRT-ADVIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcccc----ccc-HHHHHHH
Confidence 678999999999999886 278999999999999999999998763 22 22222221 111 1222222
Q ss_pred HHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh------hHHHHHhccCCCCCCCeEEEEecccc-----------
Q 040862 136 LSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN------QIESLVGSLDRLLPESRILITTRNKQ----------- 198 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~~~~iliTsr~~~----------- 198 (381)
....... ..+ ...++-+||||+++... .+..+...+. ..++.+|+|+.+..
T Consensus 85 i~~~~~~----~sl------~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 85 AGEAATS----GSL------FGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred HHHhhcc----Ccc------cCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccc
Confidence 2221111 000 11356799999997542 2455554444 23455666664332
Q ss_pred ----CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 ----MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 ----l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+++++..+....+...+....... .++.++.|++.++|....+....
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 788899999998887775444322 24778999999999877664433
No 23
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.2e-07 Score=86.34 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=154.9
Q ss_pred CCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccce-EEEEeccccccCCCChHHHH
Q 040862 60 LQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGS-CFLENVREESQKPGGLASLQ 132 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~ 132 (381)
-|..+.+|+.+++++...|. .+..+.|+|++|+|||+.++.+++++....... +.+.++.. ......+.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~----~~t~~~i~ 90 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE----LRTPYQVL 90 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee----CCCHHHHH
Confidence 34679999999999999886 445599999999999999999999887764444 45555544 55667777
Q ss_pred HHHHHHHhccCCC-CCC---HHHHHHHhC--CCeEEEEEeCCCChh-----hHHHHHhccCCCCCCCeEE-EEecccc--
Q 040862 133 QKLLSEVLKDVNV-IPH---IDLNFRRLS--RRKVLIVLDDVTCFN-----QIESLVGSLDRLLPESRIL-ITTRNKQ-- 198 (381)
Q Consensus 133 ~~l~~~~~~~~~~-~~~---~~~l~~~l~--~~~~LlvlDdv~~~~-----~~~~l~~~~~~~~~~~~il-iTsr~~~-- 198 (381)
..++..+...... .+. ...+.+.+. ++.+++|||+++... .+-.+....... .++|+ |...+..
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~ 168 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHH
Confidence 7777777533221 111 222444444 588999999996432 333444332222 34332 2222221
Q ss_pred ------------------CCCCCHHHHHHHHHHhh---ccCCCCChhHHHHHHHHHHHhCCCh-HHHHHH--HHHhccC-
Q 040862 199 ------------------MKGFGDDHALELFNRHA---FRQNLVDVDYKELSDKVINYAQGVP-LALKIL--GCYLFER- 253 (381)
Q Consensus 199 ------------------l~~L~~~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~--~~~l~~~- 253 (381)
.+|.+.+|-.+++..++ +......+..-+++..++...+|-. .||.++ |..+...
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 78899999999998776 3334444444455555555555532 222221 1122110
Q ss_pred -----CHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccCCcCH----HHHHHHHHHcCC---Chhhh
Q 040862 254 -----KREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFKGEDV----YLAKKFLEASGF---YPEIG 321 (381)
Q Consensus 254 -----~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~----~~l~~~~~~~~~---~~~~~ 321 (381)
..+....... ..-...+...+..|+...+.++..++....++.. +....++..... .....
T Consensus 249 ~~~~v~~~~v~~a~~-------~~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~i 321 (366)
T COG1474 249 GSRKVSEDHVREAQE-------EIERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDI 321 (366)
T ss_pred CCCCcCHHHHHHHHH-------HhhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHH
Confidence 1111111111 1112233445788998888887777665344443 344444544444 23457
Q ss_pred HHHHhhCCceeEc
Q 040862 322 ISILVDKSLIAIN 334 (381)
Q Consensus 322 l~~L~~~~Li~~~ 334 (381)
++.|...|+|...
T Consensus 322 i~~L~~lgiv~~~ 334 (366)
T COG1474 322 ISELEGLGIVSAS 334 (366)
T ss_pred HHHHHhcCeEEee
Confidence 8899999999853
No 24
>PRK06893 DNA replication initiation factor; Validated
Probab=98.99 E-value=1.1e-08 Score=89.47 Aligned_cols=143 Identities=15% Similarity=0.292 Sum_probs=86.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
..+.+.|+|++|+|||+|+..+++.+..+.....|+. .... ...... +.+.+. +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~-------~~~~~~-----------------~~~~~~-~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKS-------QYFSPA-----------------VLENLE-Q 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHh-------hhhhHH-----------------HHhhcc-c
Confidence 3467899999999999999999998765544445543 2110 000001 111122 2
Q ss_pred eEEEEEeCCCCh---hhHH-HHHhccCCC-CCCCeEEE-Eecccc---------------------CCCCCHHHHHHHHH
Q 040862 160 KVLIVLDDVTCF---NQIE-SLVGSLDRL-LPESRILI-TTRNKQ---------------------MKGFGDDHALELFN 212 (381)
Q Consensus 160 ~~LlvlDdv~~~---~~~~-~l~~~~~~~-~~~~~ili-Tsr~~~---------------------l~~L~~~ea~~l~~ 212 (381)
.-+|+|||++.. ..++ .+...+... ..+..+++ |+.... +++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 348999999753 2222 222222211 23455554 444321 88999999999998
Q ss_pred HhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 213 RHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+.+....... .++..+-|++.+.|..-.+..+-..+
T Consensus 172 ~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL--SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8876444222 24778888999988887775554433
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.98 E-value=1e-08 Score=101.79 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=94.3
Q ss_pred ccCCccCCCcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhccc-----cc-ceEEEEeccc
Q 040862 54 LSGFDSLQNELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRN-----FE-GSCFLENVRE 120 (381)
Q Consensus 54 ~~~~~~~~~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~ 120 (381)
......-|..+.||+.|+++|...|. ...++.|+|++|+|||++++.++.++... .+ ..+..+++..
T Consensus 747 vL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 747 MMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred HcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 33344456899999999999999887 23466899999999999999999876432 12 2233344432
Q ss_pred cccCCCChHHHHHHHHHHHhccCCC-C-CC---HHHHHHHhC---CCeEEEEEeCCCChh-----hHHHHHhccCCCCCC
Q 040862 121 ESQKPGGLASLQQKLLSEVLKDVNV-I-PH---IDLNFRRLS---RRKVLIVLDDVTCFN-----QIESLVGSLDRLLPE 187 (381)
Q Consensus 121 ~~~~~~~~~~l~~~l~~~~~~~~~~-~-~~---~~~l~~~l~---~~~~LlvlDdv~~~~-----~~~~l~~~~~~~~~~ 187 (381)
......+...+..++....+. . .. +..+...+. ....+||||+++... .+-.|+.... ..+
T Consensus 827 ----Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~ 900 (1164)
T PTZ00112 827 ----VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KIN 900 (1164)
T ss_pred ----cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccC
Confidence 234455566666666443211 1 11 222333332 234699999996432 2333333222 234
Q ss_pred CeEEE--Eecccc-------------------CCCCCHHHHHHHHHHhhcc
Q 040862 188 SRILI--TTRNKQ-------------------MKGFGDDHALELFNRHAFR 217 (381)
Q Consensus 188 ~~ili--Tsr~~~-------------------l~~L~~~ea~~l~~~~~~~ 217 (381)
++|++ ++.... .+|++.++..+++..++..
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 44433 332111 6788999999999888753
No 26
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.4e-08 Score=92.05 Aligned_cols=156 Identities=26% Similarity=0.402 Sum_probs=94.9
Q ss_pred CcccchhhHH---HHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRV---EEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l---~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.++||.+..+ .-|.+++. ...-+.+|||||+||||||+.++......|... +....+..++...+-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkdlr~i~e 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKDLREIIE 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHHHHHHHH
Confidence 4555555544 23444555 566778999999999999999998766554311 111233333332221
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEE--Eecccc--------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILI--TTRNKQ-------------- 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~ili--Tsr~~~-------------- 198 (381)
.. -.....+++.+|++|+|+.. .+-+.|++.+- .|.-|+| ||-++.
T Consensus 95 ~a-------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 95 EA-------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred HH-------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhhee
Confidence 11 12233478999999999654 45677776643 3444444 444443
Q ss_pred -CCCCCHHHHHHHHHHhhccCC-CCC----hhHHHHHHHHHHHhCCChHH
Q 040862 199 -MKGFGDDHALELFNRHAFRQN-LVD----VDYKELSDKVINYAQGVPLA 242 (381)
Q Consensus 199 -l~~L~~~ea~~l~~~~~~~~~-~~~----~~~~~~~~~i~~~~~G~PLa 242 (381)
+++|+.++..+++.+.+.... ... ...++....++..++|=-..
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 999999999999988442222 111 12245777788888886543
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.4e-07 Score=91.91 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=107.6
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
+++||.+..++.|.+.+.. .+.+.++|+.|+||||+|+.+++.+...-.... ........+....+..+...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~-----~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE-----GGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc-----ccCCCCCCcccHHHHHHHcC
Confidence 6789999999999999983 346789999999999999999987643100000 00000001111111111100
Q ss_pred Hhc-----cCCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-.. +......+++ +.+.+ .++.-++|||+++.. .....|+..+.....++.+|++|.+..
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 000 0000111222 22221 245569999999755 467788888776667777777666544
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.++..+.+.+.+....... ..+.++.|++.++|.|.-...+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999998887764333222 2456788999999999654333
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=8.9e-08 Score=89.62 Aligned_cols=171 Identities=14% Similarity=0.211 Sum_probs=104.1
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|.+.+.. ++.+.++|++|+||||+|+.+++.+....... .. +......+..+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~------~~----pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT------SN----PCRKCIICKEIEKG 85 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC------CC----CCCCCHHHHHHhcC
Confidence 6889999999999998872 35678999999999999999998764211000 00 00000000111000
Q ss_pred Hhcc----C----CCCCCHHHHHHHh-----CCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD----V----NVIPHIDLNFRRL-----SRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~----~----~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ + .....+..+.+.+ .++.-++|+|+++... .+..++..+....+..++|++|.+..
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 0 0001111122221 1345699999997654 46677777666556677777765443
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 244 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 244 (381)
+++++.++..+.+...+...+..- .++.++.|++.++|.|.-+.
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 889999999999887764433211 24678889999999986543
No 29
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.94 E-value=1e-08 Score=88.70 Aligned_cols=245 Identities=20% Similarity=0.263 Sum_probs=142.9
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
.+|+|.+...+.|.-++. ..-.+.++||||.||||||.-+++++..++. .... ..-..+.++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsG-p~leK~gDlaa---- 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSG-PALEKPGDLAA---- 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----eccc-ccccChhhHHH----
Confidence 789999998888887776 3558899999999999999999998876532 1111 11111222221
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh-hHHHHHhc---------cCCCCCCCe-----------EEEE
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN-QIESLVGS---------LDRLLPESR-----------ILIT 193 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~l~~~---------~~~~~~~~~-----------iliT 193 (381)
+...+. ..=+|++|.++... ..++++.. ....+++++ |=-|
T Consensus 97 -----------------iLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 97 -----------------ILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred -----------------HHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 111222 33367778875432 12222111 111123332 3357
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWE 259 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~ 259 (381)
||... ++..+.+|..+++.+.+.--+.. ..++.+.+|++++.|.|.. +.+.|+. ..++.
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRI---AnRLLrR--VRDfa 231 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRI---ANRLLRR--VRDFA 231 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHH---HHHHHHH--HHHHH
Confidence 77654 77889999999998877332222 2247789999999999953 3344321 11111
Q ss_pred HHHHH--HHhcccccHHHHHHhhhcCCChhhhhhhhhhhccc--CCcCHHHHHHHHHHcCCChhhhHH-HHhhCCceeEc
Q 040862 260 NAIKK--LKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFF--KGEDVYLAKKFLEASGFYPEIGIS-ILVDKSLIAIN 334 (381)
Q Consensus 260 ~~~~~--l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Li~~~ 334 (381)
..... +...........+..-=..|+.-.++++..+.-.. .++..+.+...++.+....++.++ .|++.|+|+..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhC
Confidence 11100 00001112333444444567777788887777544 446667777776554444444444 59999999999
Q ss_pred CCCcEE
Q 040862 335 PYNKIT 340 (381)
Q Consensus 335 ~~~~~~ 340 (381)
..|+..
T Consensus 312 pRGR~a 317 (332)
T COG2255 312 PRGRIA 317 (332)
T ss_pred CCccee
Confidence 888864
No 30
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.93 E-value=3.9e-08 Score=85.99 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=95.1
Q ss_pred Cccc--chhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 62 NELV--GVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 62 ~~~v--GR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
++|+ +.+..++.+.+++. ..+.+.|+|++|+|||+||+.+++.........++ .++..... .. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~-i~~~~~~~---~~----~~--- 83 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY-LPLAELAQ---AD----PE--- 83 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE-EeHHHHHH---hH----HH---
Confidence 3454 34557777777754 67789999999999999999999876544333333 33322211 00 01
Q ss_pred HHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh---h-HHHHHhccCC-CCCCCeEEEEecccc--------------
Q 040862 138 EVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN---Q-IESLVGSLDR-LLPESRILITTRNKQ-------------- 198 (381)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~-~~~l~~~~~~-~~~~~~iliTsr~~~-------------- 198 (381)
+...+.+ .-+|||||++... . ...+...+.. ...+..+|+||+...
T Consensus 84 --------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1111222 2389999996432 1 2233322211 022347888876421
Q ss_pred -------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 199 -------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 199 -------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+++++.++...++...+...... ..++..+.|.+.+.|+|..+..+...+
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 78888888888887655322211 224667778888888888776655443
No 31
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=8.5e-08 Score=92.82 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=103.9
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc--ccceEEEEeccc-cc-cCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN--FEGSCFLENVRE-ES-QKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~-~~-~~~~~~~~l~~~ 134 (381)
.+++|.+...+.|..++.. +..+.++|++|+||||+|+.+++.+... ....++.+.... .. ....++..+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~- 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA- 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc-
Confidence 6789999999999998872 3456999999999999999999876421 111222211000 00 00000000000
Q ss_pred HHHHHhccCCCCCCHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc---------
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------- 198 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------- 198 (381)
........+..+...+ .+++-++|||+++.. ..+..++..+....+.+.+|+++....
T Consensus 93 ------~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 93 ------ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred ------cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 0000000111122111 235568999999754 457777777665455556665554332
Q ss_pred -----CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHH
Q 040862 199 -----MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 244 (381)
Q Consensus 199 -----l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 244 (381)
+.+++.++..+.+.+.+...+... .++.+..|++.++|.+.-+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 889999999999988775444222 24778999999999996553
No 32
>PF13173 AAA_14: AAA domain
Probab=98.91 E-value=1e-08 Score=81.06 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=64.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
+.++++|.|+.|+|||||+.++++... . ...+++.++..... .... . ......+.+...++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~-~-~~~~~yi~~~~~~~--------~~~~-----~----~~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL-P-PENILYINFDDPRD--------RRLA-----D----PDLLEYFLELIKPG 61 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-c-cccceeeccCCHHH--------HHHh-----h----hhhHHHHHHhhccC
Confidence 357899999999999999999998765 1 12333333322111 0000 0 00112233333347
Q ss_pred eEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 160 KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 160 ~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
+.+++||++.....|...+..+....++.+|++|+....
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchH
Confidence 789999999888888777777766566789999988654
No 33
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.90 E-value=7.9e-09 Score=87.32 Aligned_cols=46 Identities=30% Similarity=0.557 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 63 ELVGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.|+||+.++++|...+. .++.+.|+|++|+|||+|+.+++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 78999999999999999999999988776
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2e-07 Score=93.83 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=106.9
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccccc--c-eEEEE---------------eccc
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFE--G-SCFLE---------------NVRE 120 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~---------------~~~~ 120 (381)
.++||.+..++.|.+++.. .....++|++|+||||+|+.+++.+..... . .|..+ .+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 6889999999999998872 345689999999999999999987643210 0 00000 0000
Q ss_pred cccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 121 ESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 121 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
.+ ...... .+.+...+. ..-..++.-++|||+++.. .....|+..+-....++++|++|.+..
T Consensus 96 as--~~kVDd-IReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 96 AS--RTKVDD-TRELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred cc--ccCHHH-HHHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 00 001111 111111110 0111346679999999754 467777777766666777777665544
Q ss_pred --------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 --------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 --------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.++..+.+.+.+...... ...+.+..|++.++|.|.-+..+
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998876443222 23467888999999999655443
No 35
>PRK08727 hypothetical protein; Validated
Probab=98.87 E-value=1e-07 Score=83.59 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=87.4
Q ss_pred Ccccchh-hHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVE-SRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~-~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
+.|++.. ..+..+..... ....+.|+|++|+|||+|+..+++...++.....|+. ... ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~~~-- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGRLR-- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhhHH--
Confidence 3454433 33333333332 3457999999999999999999988766543344443 211 111110
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----hhHHHHHhccCC-CCCCCeEEEEecccc---------------
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----NQIESLVGSLDR-LLPESRILITTRNKQ--------------- 198 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTsr~~~--------------- 198 (381)
...+.+. ..-+|||||++.. .....++..+.. ...+..+|+|++...
T Consensus 86 ------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 86 ------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred ------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 1111121 2348999999632 122233332221 124567999998654
Q ss_pred ------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+++++.++-.+++.+.+...... ..++.+..|++.++|-.-.+
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 77888888888888766433221 12466777777777665544
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.8e-07 Score=91.34 Aligned_cols=172 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.|.+++.. ...+.++|++|+||||+|+.+++.+....... .. +.+....++.+...
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~-----~~-----pCg~C~sC~~I~~g 84 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT-----ST-----PCEVCATCKAVNEG 84 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC-----CC-----CCccCHHHHHHhcC
Confidence 6889999999999999882 45779999999999999999998753211000 00 00000111111100
Q ss_pred Hhc-----cCCCCCCHHH---HHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
... .......++. +... ..++.-++|||+++.. .....++..+....++..+|++|.+..
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 000 0000111222 1111 1245568999999765 456677776665556778888776543
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+.+++.++..+.+.+.+...+..- ..+.+..|++.++|.+..+..
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 889999999999988775443222 246788899999998855543
No 37
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=2e-07 Score=88.38 Aligned_cols=170 Identities=15% Similarity=0.145 Sum_probs=103.8
Q ss_pred CcccchhhHHHHHHHhhCCC---cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGAA---PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~---~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..+..|..++... ..+.++|++|+||||+|+.+++.+........-.++ . ... +..+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg--~----C~s----C~~i~~g 87 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN--E----CTS----CLEITKG 87 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC--C----CcH----HHHHHcc
Confidence 67899999999999988833 357999999999999999999876432110000000 0 000 0111100
Q ss_pred Hhcc----CC-C---CCCHHHHHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD----VN-V---IPHIDLNFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~----~~-~---~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ +. . ...+..+.+. ..++.-++|||+++.. +.+..++..+........+|++|.+..
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 0000 00 0 0111112111 2345679999999754 457778777765455666665555433
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+.+.+.+...+.. ..++.+..|++.++|.+.-.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHHH
Confidence 88999999999888877544322 22567899999999998544
No 38
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=2e-07 Score=91.77 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=105.9
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|.+++.. .+.+.++|++|+||||+|+.+++.+........ . .......+..+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~--~--------pCg~C~sCr~i~~g 85 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHG--E--------PCGVCQSCTQIDAG 85 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCC--C--------CCcccHHHHHHhcc
Confidence 6889999999999999882 457899999999999999999886532210000 0 00000000000000
Q ss_pred Hh-----ccCCCCCC---HHHHHHH-----hCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VL-----KDVNVIPH---IDLNFRR-----LSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~-----~~~~~~~~---~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-. .+...... +..+... ..++.-++|||+++... ....|+..+......+++|++|.+..
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 00 00000011 1112211 12355689999997654 35566666655456677777775543
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.+++.++..+.+.+.+...+..- .++.+..|++.++|.+.-+..+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHHHHH
Confidence 779999999999988775444222 24678899999999986654433
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.84 E-value=1.3e-07 Score=82.92 Aligned_cols=150 Identities=12% Similarity=0.218 Sum_probs=86.7
Q ss_pred HHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCC
Q 040862 70 RVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIP 147 (381)
Q Consensus 70 ~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 147 (381)
.+..+..+.. ..+.+.|+|++|+|||+|+..+++........+.|+ .+.... . ....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~-~~~~~~---~----~~~~------------- 90 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV-PLDKRA---W----FVPE------------- 90 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE-EHHHHh---h----hhHH-------------
Confidence 4444554443 457899999999999999999998766543223333 232110 0 0001
Q ss_pred CHHHHHHHhCCCeEEEEEeCCCCh---hhHH----HHHhccCCCCCCCeEEEEecccc---------------------C
Q 040862 148 HIDLNFRRLSRRKVLIVLDDVTCF---NQIE----SLVGSLDRLLPESRILITTRNKQ---------------------M 199 (381)
Q Consensus 148 ~~~~l~~~l~~~~~LlvlDdv~~~---~~~~----~l~~~~~~~~~~~~iliTsr~~~---------------------l 199 (381)
+.+.+.+ --+|+|||++.. ..++ .++..... ..+.++|+||+... +
T Consensus 91 ----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l 164 (235)
T PRK08084 91 ----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKL 164 (235)
T ss_pred ----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeee
Confidence 1111111 137999999543 2222 22222221 12347999998664 7
Q ss_pred CCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 200 KGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 200 ~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
++++.++-.+++.+.+...... -.++..+-|++.+.|..-.+..+-.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7888888888887755433221 2256778888888887766654443
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.83 E-value=4.9e-08 Score=78.78 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=69.9
Q ss_pred cchhhHHHHHHHhhCC--CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc
Q 040862 65 VGVESRVEEIESLLGA--APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD 142 (381)
Q Consensus 65 vGR~~~l~~l~~~l~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 142 (381)
+|++..+..+...+.. .+.+.|+|++|+|||++++.+++.+..... .+++.+...... . ....... ..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~~~~~~-~---~~~~~~~-~~---- 70 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNASDLLE-G---LVVAELF-GH---- 70 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCC-CeEEEehhhhhh-h---hHHHHHh-hh----
Confidence 4788899999998874 889999999999999999999998753322 333333322111 0 0000000 00
Q ss_pred CCCCCCHHHHHHHhCCCeEEEEEeCCCCh--h---hHHHHHhccCCC---CCCCeEEEEecccc
Q 040862 143 VNVIPHIDLNFRRLSRRKVLIVLDDVTCF--N---QIESLVGSLDRL---LPESRILITTRNKQ 198 (381)
Q Consensus 143 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~---~~~~l~~~~~~~---~~~~~iliTsr~~~ 198 (381)
. ............++.+|++||++.. . .+...+...... ..+..+|+|+....
T Consensus 71 ~---~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F---LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h---hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 0000112223356789999999853 2 233333333221 35678888887543
No 41
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.81 E-value=9.4e-08 Score=82.78 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=86.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.|+|++|+|||.|+..+++.+.+.++ ..+.+... .++...+...+.. .....+.+.+.+-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~-----~~~~~~~~~~~~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRD-----GEIEEFKDRLRSA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHT-----TSHHHHHHHHCTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHc-----ccchhhhhhhhcC
Confidence 456899999999999999999998765433 33433322 2233333333322 3445566666644
Q ss_pred eEEEEEeCCCChh---h-HHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCFN---Q-IESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~~---~-~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
. +|+|||++... . -+.+...+... ..+.++|+|+.... +++++.++-.+++.+
T Consensus 99 D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 99 D-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp S-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred C-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 4 88999995432 1 12222222211 24668999997664 777778888887777
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 249 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 249 (381)
.+...... ..++.++-|.+.+.+..-.|..+-..
T Consensus 178 ~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIE--LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 76443322 22466777777777766666544433
No 42
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=5e-07 Score=86.59 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=104.3
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.++||.+...+.|.+.+.. ++...++|++|+||||+|+.++..+...+.... .+.+....+..+...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~----------~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS----------DPCGTCHNCISIKNS 82 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC----------CCccccHHHHHHhcc
Confidence 6889999999999988872 457889999999999999999875421110000 001111111111111
Q ss_pred Hhcc-----CCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++. +.+.. .++.-++|+|+++.. .....++..+....+.+.+|++|.+..
T Consensus 83 ~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~t 162 (491)
T PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162 (491)
T ss_pred CCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHH
Confidence 0000 000011111 11111 134558999999754 357777777776667777777775443
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+.+.+.+...+..- .++.++.|++.++|.+..+
T Consensus 163 I~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 888999999999988775544222 2467888999999988644
No 43
>PTZ00202 tuzin; Provisional
Probab=98.80 E-value=1.9e-06 Score=79.96 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=90.4
Q ss_pred CCccCCCcccchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHH
Q 040862 56 GFDSLQNELVGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLAS 130 (381)
Q Consensus 56 ~~~~~~~~~vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 130 (381)
+-+.....|+||+.++..|...|. .+++++|+|++|+|||||++.+..... ...++.+.. +..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHH
Confidence 455556899999999999999986 356999999999999999999997654 235554432 5688
Q ss_pred HHHHHHHHHhccCCCC-C-CHHHHHHH-----hC-CCeEEEEEeCC--CChh-hHHHHHhccCCCCCCCeEEEEecccc-
Q 040862 131 LQQKLLSEVLKDVNVI-P-HIDLNFRR-----LS-RRKVLIVLDDV--TCFN-QIESLVGSLDRLLPESRILITTRNKQ- 198 (381)
Q Consensus 131 l~~~l~~~~~~~~~~~-~-~~~~l~~~-----l~-~~~~LlvlDdv--~~~~-~~~~l~~~~~~~~~~~~iliTsr~~~- 198 (381)
++..++..++...... . -+..+.+. .. +++.+||+-== .+.. .+.+.... ..-..-|+|++----+.
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-HccchhheeeeeehHhhc
Confidence 8999998888642211 1 11222222 12 56666666422 1211 11111111 10023355554221111
Q ss_pred --------------CCCCCHHHHHHHHHHhh
Q 040862 199 --------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 199 --------------l~~L~~~ea~~l~~~~~ 215 (381)
+++++.++|.++.....
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 88999999998776543
No 44
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=1.8e-07 Score=92.30 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=107.2
Q ss_pred CcccchhhHHHHHHHhhCCCc---EEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGAAP---LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~---~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.++||.+..++.|.+.+...+ ...++|++|+||||+|+.+++.+...... . . .+.+....+..+...
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~--~----~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T--A----TPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C--C----CCCCCCHHHHHHHcC
Confidence 689999999999999998443 37899999999999999999865432100 0 0 011111222222110
Q ss_pred Hhc-----cCCCCCCHHH---HHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-.. .......++. +.+. ..++.-++|||+++.. .....|+..+-...+++++|++|.+..
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 000 0000011121 2222 2345669999999754 457777777766566777776665544
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.++..+.+.+.+...+... .++....|++.++|.+.-...+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999987764333222 2466788999999988754443
No 45
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.77 E-value=4.9e-07 Score=84.73 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=102.7
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc----cc-----------------ceEEEEe
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN----FE-----------------GSCFLEN 117 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~-----------------~~~~~~~ 117 (381)
.+++|.+..++.|...+.. ++.+.++|++|+|||++|..++..+... +. ..+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~- 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID- 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee-
Confidence 6789999999999998872 3467899999999999999999875421 10 011111
Q ss_pred ccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEec
Q 040862 118 VREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 118 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
... ..... -.+.+....... -..+.+-++|+|+++.. .....++..+....+.+.+|++|.
T Consensus 93 ~~~----~~~~~-~~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~ 155 (355)
T TIGR02397 93 AAS----NNGVD-DIREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATT 155 (355)
T ss_pred ccc----cCCHH-HHHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeC
Confidence 000 00100 011111111000 01134458999998754 446667766655455666666664
Q ss_pred ccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 196 NKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 196 ~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.. +++++.++..+++...+...+..- .++.+..+++.++|.|..+....
T Consensus 156 ~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 156 EPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 432 778899999999887764433221 24778889999999997664443
No 46
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.4e-06 Score=81.08 Aligned_cols=179 Identities=12% Similarity=0.106 Sum_probs=105.3
Q ss_pred CCCcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccc--cceEEEEeccccccCCCChHHHHHH
Q 040862 60 LQNELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF--EGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
...+++|.+...+.|.+.+.. +....++|+.|+||+++|..+++.+-.+- .....-... .+....+....++.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~--~~l~~~~~c~~c~~ 94 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP--TSLAIDPDHPVARR 94 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc--ccccCCCCChHHHH
Confidence 337899999999999999883 55788999999999999999998653211 000000000 00000000111111
Q ss_pred HHHHHhcc----C----C------CCCCHHH---HHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeE
Q 040862 135 LLSEVLKD----V----N------VIPHIDL---NFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRI 190 (381)
Q Consensus 135 l~~~~~~~----~----~------~~~~~~~---l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~i 190 (381)
+......+ . . ..-.+++ +.+.+. +.+-++|||+++.. .....++..+....+++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111110 0 0 0011222 333332 46679999999643 4566677666655556667
Q ss_pred EEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 191 LITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 191 liTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
|++|.+.. +.+++.++..+++...... .. .+....++..++|+|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77666553 8999999999999876421 11 223367899999999865444
No 47
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=5.4e-07 Score=87.02 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=104.0
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|...+.. .+.+.++|++|+||||+|+.+++.+....... . +...........+..+...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~----~--~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALIT----E--NTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccc----c--CcCcCCCCCChHHHHHhcC
Confidence 6789999999999987763 35789999999999999999998763221000 0 0000000000111111100
Q ss_pred Hhcc-----CCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++. +.+.. .++.-++|+|+++.. ..+..++..+....+.+.+|++|....
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 0000 000111122 22111 245668999999764 457777777665556666665553332
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+.+.+.+...+... .++.+..|++.++|.+.-+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 889999999999998885544222 2467788999999988555
No 48
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=4.6e-07 Score=87.09 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=100.5
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccccc---------------------ceEEEEe
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFE---------------------GSCFLEN 117 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~ 117 (381)
.+++|.+...+.|...+.. ++.+.++||+|+||||+|+.+++.+...-. ....+ +
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el-~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL-D 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE-e
Confidence 6899999998999888873 344789999999999999999986532100 00111 0
Q ss_pred ccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEec
Q 040862 118 VREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 118 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
.. + ..+...+ +.+...... .-..+++-++|+|+++.. ...+.++..+....+...+|++|.
T Consensus 93 aa--~--~~gid~i-R~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 93 AA--S--NRGIDEI-RKIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred Cc--c--cCCHHHH-HHHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 00 0 1111111 111110000 001245669999999754 345666666654444555555544
Q ss_pred ccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 040862 196 NKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILGC 248 (381)
Q Consensus 196 ~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 248 (381)
+.. +.+++.++....+.+.+...+.. ..++.+..|++.++|. +.++..+-.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 322 78999999999988877443322 2246788899988765 556655544
No 49
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.76 E-value=6.5e-08 Score=90.75 Aligned_cols=156 Identities=16% Similarity=0.274 Sum_probs=92.9
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|++.++++|.+.+. .++.+.|+|++|+|||++|+.+++.....|-.. . .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~-------- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-G-------- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-h--------
Confidence 678999999999988763 256699999999999999999998775543211 0 0
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHH-HhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFR-RLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~ 187 (381)
..+.... ... ....+..+.. .-...+.+|+||+++.. ..+..++..+... ..+
T Consensus 190 --~~l~~~~----~g~--~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 --SELVRKY----IGE--GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred --HHHHHHh----hhH--HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1111110 000 0001111222 22357789999998642 1233333333221 245
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++..+.++..++|.....+...... -....+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 67777776432 6678889999999877644332221 12566777887754
No 50
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=8.1e-07 Score=84.17 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=104.6
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc--ccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN--FEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.+++|.+...+.|..++.+ ...+.++||+|+||||+|..+++.+... +....|...... +.+....++.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~~c~~~~ 91 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECESCRDFD 91 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCHHHHHHh
Confidence 6889999999999999883 3457899999999999999999876431 000000000000 011111111111
Q ss_pred HHHhcc-----CCC---CCCHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc---
Q 040862 137 SEVLKD-----VNV---IPHIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--- 198 (381)
Q Consensus 137 ~~~~~~-----~~~---~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--- 198 (381)
.....+ ... ...+..+...+ .+.+-++|+|+++.. ..+..++..+....+.+.+|+++....
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 100000 001 11122222333 234568899999754 356677776665556666666554332
Q ss_pred -----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 -----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 -----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+++++.++..+.+...+...... ..++.++.+++.++|.+.-+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 78899999998888776433211 2257789999999998865543
No 51
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.3e-07 Score=91.00 Aligned_cols=176 Identities=17% Similarity=0.207 Sum_probs=105.7
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|...+.. ...+.++|++|+||||+|+.+++.+........ . ...+....++.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~----~-----~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK----G-----RPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----C-----CCCccCHHHHHHhcC
Confidence 6899999999999988873 345689999999999999999987642110000 0 011111222222211
Q ss_pred Hhcc----CC-CCCCHH---HHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD----VN-VIPHID---LNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~----~~-~~~~~~---~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ .. .....+ .+.+.+ ...+-++|||+++.. +..+.|+..+....+.+.+|+++.+..
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 1110 00 011111 122221 135568999999754 456677766665455666666664432
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+++++..+....+.+.+...+..- .++.+..|++.++|.+..+.....
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777889998888887764433221 246788999999999976644433
No 52
>PRK05642 DNA replication initiation factor; Validated
Probab=98.75 E-value=2.1e-07 Score=81.53 Aligned_cols=142 Identities=23% Similarity=0.329 Sum_probs=84.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCe
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRK 160 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 160 (381)
.+.+.|+|++|+|||.|+..+++.+..+...++|+. .... ... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~----------~~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAEL----------LDR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHH----------Hhh--------------hHHHHHhhhhCC
Confidence 367899999999999999999987655433344443 2211 110 012233333333
Q ss_pred EEEEEeCCCCh---hhH-HHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHHh
Q 040862 161 VLIVLDDVTCF---NQI-ESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNRH 214 (381)
Q Consensus 161 ~LlvlDdv~~~---~~~-~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~~ 214 (381)
+|++||++.. ..+ +.++..+... ..+..+|+|++... +++++.++-.+++...
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999532 222 2233333211 24567888887654 6788888888888755
Q ss_pred hccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 215 AFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+...... ..++..+.|++.+.|..-.+..+-..|
T Consensus 179 a~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLH--LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5333221 224777788888888776665544433
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.7e-07 Score=85.33 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=105.8
Q ss_pred CCCcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 60 LQNELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
....++|.+...+.|...+.. +..+.|+|+.|+||||+|..+++.+...-+...--..... +......++.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~----~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD----PDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC----CCCCCHHHHHHH
Confidence 347899999999999999983 3469999999999999999999876442100000000000 111111222221
Q ss_pred HHHhc----------cC----CCCCCHHH---HHHHhC-----CCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEE
Q 040862 137 SEVLK----------DV----NVIPHIDL---NFRRLS-----RRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILI 192 (381)
Q Consensus 137 ~~~~~----------~~----~~~~~~~~---l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili 192 (381)
..... .. ...-.+++ +.+.+. ++.-++|||+++... ....++..+.....+..+|+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 11000 00 00011222 333322 456699999997543 45666666655445555555
Q ss_pred Eecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 193 TTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 193 Tsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+|.... +++++.++..+++........ ..++.+..+++.++|.|.....+
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444332 999999999999987542211 12455788999999999865443
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=6.8e-07 Score=86.82 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=103.5
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.++||-+..++.|.+++. -+....++|++|+||||+|+.+++.+-....... . +.+....+..+...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-----~-----pCg~C~~C~~i~~g 85 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-----N-----PCNDCENCREIDEG 85 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-----c-----cCCCCHHHHHHhcC
Confidence 678999999999999997 2456789999999999999999986532100000 0 00000111111000
Q ss_pred Hhc-----cCCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-.. .......++. +.+.. .++.-++|||+++.. .....++..+....+.+++|++|.+..
T Consensus 86 ~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~t 165 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVT 165 (509)
T ss_pred CCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHH
Confidence 000 0000111111 11111 234558999999754 456777777666566777777665433
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+++++.++....+...+...+... .++.+..|++.++|.+.-+..
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 166 VLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHH
Confidence 888999998888777764443222 245678899999998865543
No 55
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.4e-06 Score=81.90 Aligned_cols=165 Identities=17% Similarity=0.233 Sum_probs=100.7
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc--------ccceEEEEeccccccCCCChHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN--------FEGSCFLENVREESQKPGGLAS 130 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~~~ 130 (381)
.+++|.+..++.+.+.+.. ++.+.++|++|+|||++|..+++.+... |...++-. .... ......
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~~--~~~~~~ 92 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAAS--NNSVDD 92 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cccc--CCCHHH
Confidence 6889999999999999872 4578899999999999999998876431 22112111 1100 111111
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc----------
Q 040862 131 LQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ---------- 198 (381)
Q Consensus 131 l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~---------- 198 (381)
...+....... -..+++-++++|+++.. ..+..++..+....+.+.+|+++....
T Consensus 93 -i~~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 93 -IRNLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred -HHHHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 11111111000 01134558999999644 346666655544344556666654332
Q ss_pred ----CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 ----MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 ----l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+++++.++....+...+...+..- .++.++.+++.++|.+-.+..
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRDALS 208 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHHHHH
Confidence 778888999988887775444221 247788899999998765433
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.74 E-value=4.5e-08 Score=77.73 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc----cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH----
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF----EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL---- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---- 151 (381)
+.+.+.|+|++|+|||+++..+++.....+ ...+++..... ......+...++..+............
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 367899999999999999999999765421 23333444433 236788888888888877444233332
Q ss_pred HHHHhCC-CeEEEEEeCCCCh-h--hHHHHHhccCCCCCCCeEEEEecc
Q 040862 152 NFRRLSR-RKVLIVLDDVTCF-N--QIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 152 l~~~l~~-~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
+.+.+.. +..+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4455544 4469999999765 2 3444433323 566788887765
No 57
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.73 E-value=2.7e-07 Score=80.76 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred Cccc-chhh-HHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELV-GVES-RVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~v-GR~~-~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
++|+ |.+. .+..+.++.. ..+.+.|+|++|+|||+||..+++.....-....++. ..... . .+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~~-------~---~~- 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASPL-------L---AF- 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHhH-------H---HH-
Confidence 4444 4433 3344444433 4578999999999999999999987644322233332 22110 0 00
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCC-CCCC-eEEEEecccc--------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRL-LPES-RILITTRNKQ-------------- 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~-~~~~-~iliTsr~~~-------------- 198 (381)
... ...-+||+||++.. .....+...+... ..+. .+|+|++...
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 001 12347999999643 2222333322211 1233 3666655321
Q ss_pred ------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 199 ------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 199 ------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+++++.++-..++.+.+...... ..++..+.+++.+.|++..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 77888777667666544322211 124677778888888888776665544
No 58
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=5.3e-07 Score=87.62 Aligned_cols=160 Identities=14% Similarity=0.214 Sum_probs=99.4
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccc---------------------cceEEEEe
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF---------------------EGSCFLEN 117 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 117 (381)
.+++|.+..++.|...+.. ...+.++|++|+||||+|+.+++.+.... ...+.+ +
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei-d 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI-D 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe-e
Confidence 6789999999999999883 34578999999999999999998653211 011111 0
Q ss_pred ccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEec
Q 040862 118 VREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 118 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
... ..+..+ .+.+...+.. .-..+++-++|+|+++.. .....++..+....+.+.+|++|.
T Consensus 95 aas----~~gvd~-ir~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 95 AAS----RTGVEE-TKEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred ccc----ccCHHH-HHHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 000 011111 0111111000 011245669999999754 456677777665556666665554
Q ss_pred ccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 196 NKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 196 ~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
+.. +++++.++..+.+.+.+...+.. ..++.+..|++.++|.+.
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 332 88999999998888766443322 224667889999999775
No 59
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.72 E-value=2.2e-07 Score=89.06 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=96.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.|+|++|+|||+|+..+++.+.... ...+.+... .++...+...+.... ..+..+...+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~~---~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKTH---KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHhh---hHHHHHHHHhcc-
Confidence 35689999999999999999998765432 223333222 234444443333211 123334444443
Q ss_pred eEEEEEeCCCCh----hhHHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCF----NQIESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~----~~~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
.-+|||||++.. ...+.+...+... ..+..||+|+.... +++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 347889999532 2223333332211 23457888876543 889999999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
.+...+......++.++.|++.+.|.|-.+.-+...+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8754332112346788999999999998886665444
No 60
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=9.4e-07 Score=87.07 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=106.2
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
+++||-+..++.|.+++.. ...+.++|+.|+||||+|+.+++.+...-... .......+.+....++.+...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~-----~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG-----QGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc-----ccCCCCCCCCccHHHHHHHcC
Confidence 6789999999999999883 45678999999999999999988653210000 000000011111122222110
Q ss_pred Hhcc-----CCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++. +.+.. .++.-++|||+++.. .....++..+......+.+|++|.+..
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 000111222 22221 134458999999754 457777777766556667776664432
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.++..+.+.+.+...+..- .++.+..|++.++|.+.-+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999988775444222 2467888999999988655443
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.8e-07 Score=83.10 Aligned_cols=161 Identities=15% Similarity=0.239 Sum_probs=102.5
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhccc-----ccceEEEEeccccccCCCChHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN-----FEGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
.+++|.+...+.|...+. -++...++|+.|+|||++|..++..+... ++....+....+. .-...+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~---~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKK---SIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCC---CCCHHH-HH
Confidence 467899999999999987 35677899999999999999999865221 2222222211110 111222 22
Q ss_pred HHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCC--ChhhHHHHHhccCCCCCCCeEEEEecccc-------------
Q 040862 134 KLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVT--CFNQIESLVGSLDRLLPESRILITTRNKQ------------- 198 (381)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~~~iliTsr~~~------------- 198 (381)
.+...+... -..+++-++|+|+++ +......++..+....+++.+|++|.+..
T Consensus 80 ~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 80 NIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 222211110 011344477777775 44567788888887777888888876553
Q ss_pred -CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHH
Q 040862 199 -MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 244 (381)
Q Consensus 199 -l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 244 (381)
+.+++.++....+.+.... . .++.++.++..++|.|.-+.
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~---~---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYND---I---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eCCCcCHHHHHHHHHHHhcC---C---CHHHHHHHHHHcCCCHHHHH
Confidence 7889999998888765421 1 13457788999999986553
No 62
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.69 E-value=6.8e-07 Score=89.97 Aligned_cols=156 Identities=24% Similarity=0.351 Sum_probs=92.7
Q ss_pred CcccchhhHHH---HHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRVE---EIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~---~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
++|+|++..+. .|.+.+. ....+.|+|++|+||||||+.+++.....|. .+ +. . .....++ +..+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~l-na--~---~~~i~di-r~~i 97 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SL-NA--V---LAGVKDL-RAEV 97 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---ee-hh--h---hhhhHHH-HHHH
Confidence 67899998874 5666665 4557899999999999999999987654431 11 11 0 1111111 1111
Q ss_pred HHHhccCCCCCCHHHHHHHh--CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEE--ecccc------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRL--SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILIT--TRNKQ------------ 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliT--sr~~~------------ 198 (381)
. .....+ .+++.+||||+++.. ...+.++..+. .+..++|+ |.+..
T Consensus 98 ~-------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 98 D-------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred H-------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccc
Confidence 1 111111 235679999999754 34555655432 23334442 33221
Q ss_pred ---CCCCCHHHHHHHHHHhhccC-----CCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---MKGFGDDHALELFNRHAFRQ-----NLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---l~~L~~~ea~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+++++.++...++.+.+... .......++..+.|++.+.|+.--+
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 89999999999998766410 1111223567888999999986544
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.69 E-value=3.4e-07 Score=86.41 Aligned_cols=156 Identities=16% Similarity=0.266 Sum_probs=89.9
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|++.+++++.+.+. .++.+.|+|++|+|||++|+.+++.....| +......
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~~~------ 200 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVGSE------ 200 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeehHH------
Confidence 678999999999998653 356799999999999999999998765431 1111111
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh------------h----hHHHHHhccCCC--CCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF------------N----QIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~------------~----~~~~l~~~~~~~--~~~ 187 (381)
+. ....+. ....+.. +...-...+.+|+||+++.. . .+..++..+... ..+
T Consensus 201 ----l~----~~~~g~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 201 ----LV----QKFIGE--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred ----Hh----Hhhccc--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 11 000000 0011111 12222357889999999643 1 122333333221 234
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... +++.+.++-.++|+.+..+...... -....+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence 56777775432 6778888888888877643332211 12455667776643
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.68 E-value=4.6e-07 Score=78.81 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
..+.+.|+|++|+|||+|++.++.... ..++. .. .+...+... +.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~~----------~~~~~~~~~-----------------~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-PN----------EIGSDAANA-----------------AAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-HH----------HcchHHHHh-----------------hhc-
Confidence 356789999999999999999887532 12332 11 011111111 011
Q ss_pred eEEEEEeCCCCh----hhHHHHHhccCCCCCCCeEEEEecccc---------------------CCCCCHHHHHHHHHHh
Q 040862 160 KVLIVLDDVTCF----NQIESLVGSLDRLLPESRILITTRNKQ---------------------MKGFGDDHALELFNRH 214 (381)
Q Consensus 160 ~~LlvlDdv~~~----~~~~~l~~~~~~~~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~~ 214 (381)
-+|++||++.. +.+-.+.+.+. ..+..+|+|++... +++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 23333333333 34667999887533 8899999999999888
Q ss_pred hccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 215 AFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+...... ..++..+-|++.+.|..-.+..+...|
T Consensus 166 ~~~~~~~--l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQLY--VDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCCC--CCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7543322 225778889999988887776544443
No 65
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=6.1e-07 Score=87.43 Aligned_cols=170 Identities=16% Similarity=0.156 Sum_probs=100.5
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.|.+.+. -++.+.++|++|+||||+|..+++.+...-+... . ..+-...++.+...
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-----~-----~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-----D-----CCNSCSVCESINTN 85 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-----C-----CCcccHHHHHHHcC
Confidence 688999999999999986 3567889999999999999999987642111000 0 00111111111111
Q ss_pred Hhcc-----CCCCCCHH---HHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHID---LNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~---~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++ .+..... .++-++|+|+++.. .....|+..+....+.+.+|++|....
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 0000 00001111 1222111 23346999999753 445666666554445566665554332
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++....+...+...+..- .++.+..+++.++|.+.-+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDG 217 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 888999999998887764433211 2466888999999977543
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.67 E-value=4.7e-07 Score=76.74 Aligned_cols=76 Identities=14% Similarity=0.355 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCC
Q 040862 158 RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLV 221 (381)
Q Consensus 158 ~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~ 221 (381)
+.+-++|+||++.. ...+.++..+....+.+.+|++|++.. +.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g-----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG-----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC-----C
Confidence 45668999999754 346667776666556677777776543 88999999999998761 1
Q ss_pred ChhHHHHHHHHHHHhCCChH
Q 040862 222 DVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 222 ~~~~~~~~~~i~~~~~G~PL 241 (381)
.++.++.+++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 24678899999999985
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=3.3e-06 Score=83.32 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=108.2
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|.+.+. -...+.++|++|+||||+|+.+++.+.......- ........+...-++.+...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~-----~~~~~~~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD-----GGPTIDLCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc-----CCCccccCcccHHHHHHhcC
Confidence 688999999999999987 2457889999999999999999987643211000 00000011111112222111
Q ss_pred Hhcc-----CCCCCCHHH---HHHHhC-----CCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHIDL---NFRRLS-----RRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~~---l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++. +.+.+. ++.-++|+|+++... ....|+..+....+.+.+|++|.+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 1110 001111222 222222 344589999997543 46777777666566777776663332
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.+++.++....+.+.+......- .++.++.|++.++|.+.-+....
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 788999999999988775443222 24678889999999987664443
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=7.2e-07 Score=83.72 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=97.3
Q ss_pred CcccchhhHHHHHHHhhCC------------CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChH
Q 040862 62 NELVGVESRVEEIESLLGA------------APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLA 129 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~------------~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 129 (381)
.+++|.+..++.|.+.+.. ++.+.++||+|+|||++|..++..+...... . . +.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~--------~Cg~C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-P--------GCGEC 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-C--------CCCCC
Confidence 4688999999999988873 3458899999999999999998865322110 0 0 00000
Q ss_pred HHHHHHHHHHhcc------CCC---CCCHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEE
Q 040862 130 SLQQKLLSEVLKD------VNV---IPHIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILIT 193 (381)
Q Consensus 130 ~l~~~l~~~~~~~------~~~---~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliT 193 (381)
..+..+......+ ... ...+..+.+.. .+++-++|||+++.. .....++..+....++..+|++
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 1111111000000 000 00111222222 134458888999754 3455666666655566767776
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
|.+.. +++++.++..+.+.+... .+ ++.+..++..++|.|...
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHH
Confidence 66544 889999999988874321 11 355778899999999644
No 69
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=9.1e-07 Score=86.48 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=101.7
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|.+++.. .+...++|++|+||||+|+.+++.+....... . . +.+....+..+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~-~----pcg~C~~C~~i~~~ 85 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-----A-T----PCGVCSACLEIDSG 85 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----C-C----CCCCCHHHHHHhcC
Confidence 6789999999999998872 34568999999999999999998763211000 0 0 00000001110000
Q ss_pred Hhc-----cCCCCCCHHH---HHHHh-----CCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-.. +......++. +.... .+++-++|+|+++... ....++..+......+.+|++|.+..
T Consensus 86 ~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~t 165 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165 (527)
T ss_pred CCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchh
Confidence 000 0000111111 22211 2456699999998654 46677777766556666666664433
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+++++.++..+.+.+.+...+.. ..++.+..|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 88899999998887766443322 12466788999999988633
No 70
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.65 E-value=4.4e-07 Score=81.10 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...+.++|++|+||||+|+.+++.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999988653
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.64 E-value=4.8e-07 Score=92.30 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=91.8
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccc------cceEEEEeccccccCCCChHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------EGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
++++||+.++.++...|. ....+.++|+||+|||+++..+++++.... ...+|..+......
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a---------- 251 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA---------- 251 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh----------
Confidence 689999999999999887 566788999999999999999999764321 23344433221110
Q ss_pred HHHHHHhccCCCCCCHHHHHHHh-CCCeEEEEEeCCCCh-----------hhHHHHHhccCCCCCCCeEEEEecccc---
Q 040862 134 KLLSEVLKDVNVIPHIDLNFRRL-SRRKVLIVLDDVTCF-----------NQIESLVGSLDRLLPESRILITTRNKQ--- 198 (381)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsr~~~--- 198 (381)
...........+..+.+.+ .+.+++|++|+++.. +..+.+.+.+. ....++|-+|....
T Consensus 252 ----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 ----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHH
Confidence 0000011112233333333 246899999998522 11222333332 22334554444311
Q ss_pred ----------------CCCCCHHHHHHHHHHhhccCC--CCChhHHHHHHHHHHHhC
Q 040862 199 ----------------MKGFGDDHALELFNRHAFRQN--LVDVDYKELSDKVINYAQ 237 (381)
Q Consensus 199 ----------------l~~L~~~ea~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~ 237 (381)
+++++.++..++++.....-. ......++....+++.+.
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 888999999999986542211 111123455555665554
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=2.4e-06 Score=87.12 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=101.9
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.++||.+..++.|...+.. .+.+.++|+.|+||||+|+.+++.+........ . ..+...-++.+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-----~-----pCg~C~sC~~~~~g 84 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-----T-----PCGECDSCVALAPG 84 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-----C-----CCcccHHHHHHHcC
Confidence 6789999999999999872 456789999999999999999987642110000 0 00000011111100
Q ss_pred ------Hh-ccCCCCCCHHH---HHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc---
Q 040862 139 ------VL-KDVNVIPHIDL---NFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--- 198 (381)
Q Consensus 139 ------~~-~~~~~~~~~~~---l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--- 198 (381)
+. .+......++. +.+. ..++.-++|||+++.. .....|+..+......+.+|++|.+..
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00 00000011121 1111 2245558899999754 456677777766666777766664332
Q ss_pred -----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 -----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 -----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+++.+.+...+... ..+.+..|++.++|.+..+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 778899999988887764433221 2456788999999988544
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.63 E-value=5.1e-07 Score=92.99 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=93.0
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccc------cceEEEEecccccc---CCCChHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------EGSCFLENVREESQ---KPGGLAS 130 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~---~~~~~~~ 130 (381)
..++||+.++.++...|. ....+.|+|+||+|||++|..+++++.... ...+|..++..... ....+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~ 266 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFEN 266 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHH
Confidence 789999999999999887 456778999999999999999999864331 12334333322110 0111111
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHh--CCCeEEEEEeCCCCh---------hhHHH-HHhccCCCCCCCeEEEEecccc
Q 040862 131 LQQKLLSEVLKDVNVIPHIDLNFRRL--SRRKVLIVLDDVTCF---------NQIES-LVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 131 l~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~---------~~~~~-l~~~~~~~~~~~~iliTsr~~~ 198 (381)
- +..+.+.+ .+.+++|++|+++.. .+... +.+.+. ....++|-||....
T Consensus 267 ~-----------------lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e 327 (852)
T TIGR03345 267 R-----------------LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAE 327 (852)
T ss_pred H-----------------HHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHH
Confidence 1 22222222 246899999998432 12222 333322 23345666555421
Q ss_pred -------------------CCCCCHHHHHHHHHHhhccCC--CCChhHHHHHHHHHHHhCCC
Q 040862 199 -------------------MKGFGDDHALELFNRHAFRQN--LVDVDYKELSDKVINYAQGV 239 (381)
Q Consensus 199 -------------------l~~L~~~ea~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~G~ 239 (381)
+++++.+++.++++.....-. ..-...++....+++.+.++
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 899999999999754432111 11112345566666666554
No 74
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.62 E-value=6e-07 Score=78.68 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=104.0
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc--cccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR--NFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
.+++|.+..++.|.+.+. ..+....+||+|.|||+-|..+++++-. -|+..+.-.+.+.. .+.. +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGis-----vvr 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGIS-----VVR 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----cccc-----chh
Confidence 689999999999999887 6788999999999999999999987533 24444432222211 1111 000
Q ss_pred HHhccCCCCCCHHHHHHHh------CCCe-EEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc----------
Q 040862 138 EVLKDVNVIPHIDLNFRRL------SRRK-VLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ---------- 198 (381)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~l------~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~---------- 198 (381)
. ...+...+.... ..++ -++|||+++.. +.|..+...+.......+.++.+..-.
T Consensus 107 ~------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 107 E------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred h------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0 000111110000 0122 48999999754 467888777766666666554444332
Q ss_pred ----CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 199 ----MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 199 ----l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
.++|..++..+-++..+-.++..-. .+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence 8889999998888888755554332 477888999998854
No 75
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.4e-05 Score=77.33 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=102.0
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+.....|.+.+.. .+...++|++|+||||+|+.++..+...-... .. +.+...-+..+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~-----~~-----pc~~c~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQE-----GE-----PCGKCENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCC-----CC-----CCCccHHHHHHhcC
Confidence 6789999999999999973 34567899999999999999998653210000 00 00000000000000
Q ss_pred ----Hh-ccCCCCCCH---HHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 ----VL-KDVNVIPHI---DLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ----~~-~~~~~~~~~---~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
+. .+......+ ..+.+.. .+++-++|+|+++.. .....++..+....+...+|++|.+..
T Consensus 86 ~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 86 SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHH
Confidence 00 000000111 1222222 245669999999754 346667666665445555655553322
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.+++.++....+...+...+... .++.+..+++.++|.+..+....
T Consensus 166 I~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 166 ILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 888999999998888765443222 24678889999999887554443
No 76
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.2e-06 Score=82.76 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=102.6
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc--ccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN--FEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.+++|.+..++.|.+.+.. .....++|++|+||||+|..+++.+... .....|...... ..+....++.+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~sC~~~~ 91 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECESCRDFD 91 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHHHHHHh
Confidence 6889999999999998873 4457899999999999999999876331 100111110000 111111111111
Q ss_pred HHHhcc-----CCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc---
Q 040862 137 SEVLKD-----VNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--- 198 (381)
Q Consensus 137 ~~~~~~-----~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--- 198 (381)
.....+ ......+++ +.+.+ .+.+-++|+|+++.. .....|+..+....+.+.+|++|.+..
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 100000 001111222 22222 234457899999754 346677777665555666665554332
Q ss_pred -----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 -----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 -----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++....+.+.+...+.. ..++.++.|++.++|..--+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHH
Confidence 78899999998888766433321 12467888999999977644
No 77
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=1.4e-06 Score=83.44 Aligned_cols=151 Identities=14% Similarity=0.125 Sum_probs=90.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCe
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRK 160 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 160 (381)
..+.|+|++|+|||+|+..+++.+.+.+ ...+.+.+. .++...+...+.. .....+........
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~-----~~~~~f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKE-----GKLNEFREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhc-----ccHHHHHHHHHhcC
Confidence 4699999999999999999999876653 333444322 2233333333321 12334444444455
Q ss_pred EEEEEeCCCCh---h-hHHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHHh
Q 040862 161 VLIVLDDVTCF---N-QIESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNRH 214 (381)
Q Consensus 161 ~LlvlDdv~~~---~-~~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~~ 214 (381)
-+|++||++.. . .-..++..+... ..+..||+||.... +++.+.+.-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 68999999632 1 112232222111 23457888886432 7778888888888877
Q ss_pred hccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 040862 215 AFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 249 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 249 (381)
+...... ..++.++.|++.+.|+.-.|.-+-..
T Consensus 276 ~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g~l~~ 308 (440)
T PRK14088 276 LEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_pred HHhcCCC--CCHHHHHHHHhccccCHHHHHHHHHH
Confidence 6433222 12467888888888887666554433
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=5e-06 Score=81.59 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=104.4
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.|.+.+.. .+.+.++|++|+||||+|+.+++.+........ . ..+....++.+...
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~------~----pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG------E----PCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC------C----CCcccHHHHHHhcC
Confidence 6789999999999998873 467889999999999999999987642110000 0 00000111111110
Q ss_pred Hhcc-----CCCCCCHHH---HHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHIDL---NFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~~---l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++. +.+. ..++.-++|||+++.. .....|+..+....+...+|++|.+..
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 0000 000001111 1111 1245669999999754 446667766654445666666555432
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh-HHHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP-LALKILGCY 249 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~~~~~ 249 (381)
+++++.++..+.+...+...... ..++.++.|++.++|.+ .++..+...
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88999999999888766443321 12467888999999976 455555443
No 79
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=3.2e-06 Score=82.99 Aligned_cols=168 Identities=19% Similarity=0.184 Sum_probs=101.5
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|.+++.. .....++|++|+||||+|+.++..+....... . . +.+....+..+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~--------pCg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-T--------PCGVCESCVALAPN 82 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-C--------cccccHHHHHhhcc
Confidence 6889999999999999883 34578999999999999999998654211000 0 0 00001111111100
Q ss_pred Hh-------ccCCCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc---
Q 040862 139 VL-------KDVNVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--- 198 (381)
Q Consensus 139 ~~-------~~~~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--- 198 (381)
.. .+......++. +.+.. .++.-++|||+++.. .....|+..+......+.+|++|.+..
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 00 00000111222 22111 234558899999744 456777777766566776666664333
Q ss_pred -----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 199 -----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 199 -----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
+.+++.++..+.+.+.+...+..- .++.+..|++.++|.+.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 788999999998887765443222 24567888999999885
No 80
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.54 E-value=9.5e-07 Score=91.28 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=40.6
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++||+.+++++.+.|. ..+.+.++|+||+|||++|..++.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999998 556778999999999999999998764
No 81
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=4e-06 Score=80.46 Aligned_cols=165 Identities=19% Similarity=0.277 Sum_probs=100.1
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccccc------ceE-------------EEEecc
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFE------GSC-------------FLENVR 119 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~-------------~~~~~~ 119 (381)
.+++|.+..++.|.+.+.. .+.+.++|++|+|||++|..+++.+...-. +.. -+..+.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~ 96 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEID 96 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEee
Confidence 6889999999999999872 456789999999999999999986532100 000 000000
Q ss_pred ccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEeccc
Q 040862 120 EESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNK 197 (381)
Q Consensus 120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~ 197 (381)
+.. ..+...+ +.+...+. .....+.+-++|+|+++.. +....|+..+....+.+.+|++|.+.
T Consensus 97 g~~--~~gid~i-r~i~~~l~------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 97 GAS--HRGIEDI-RQINETVL------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred ccc--cCCHHHH-HHHHHHHH------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 000 0011111 11111000 0011245668999999644 34566666666545566677666432
Q ss_pred c--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 198 Q--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 198 ~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
. +++++.++....+...+...+.. ..++.++.|++.++|.+.-+
T Consensus 162 ~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 162 HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 88899999999888776433321 12467888999999987544
No 82
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=2.5e-05 Score=75.82 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc-cc-------------------ceEEEEec
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN-FE-------------------GSCFLENV 118 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-------------------~~~~~~~~ 118 (381)
.+++|-+...+.|...+.. ++...++|++|+||||+|+.+++.+-.. .. ..++..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el-- 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM-- 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe--
Confidence 6789999999999999872 3455899999999999999998875321 10 011111
Q ss_pred cccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecc
Q 040862 119 REESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
...+ ..+..++. .+....... -..++.-++|+|+++.. +....++..+....+.+++|++|.+
T Consensus 92 daas--~~gId~IR-elie~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 92 DAAS--NRGIDDIR-ELIEQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred cccc--ccCHHHHH-HHHHHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 0000 11111111 111110000 00134568999999754 3566777776665667777777755
Q ss_pred cc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 197 KQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 197 ~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
.. +.+++.++..+.+...+...+..- .++.+..|++.++|.+.-+...
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 43 889999999999887775443222 2467889999999998655444
No 83
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.52 E-value=2.4e-06 Score=80.45 Aligned_cols=156 Identities=13% Similarity=0.207 Sum_probs=88.6
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|.+...++|.+.+. .++.+.|+|++|+|||+||+.+++.....|- .+. ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s------- 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS------- 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH-------
Confidence 678999999998888653 4678999999999999999999987644321 111 10
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~ 187 (381)
.+.. ...+. ....+.. +.......+.+|+||+++.. ..+..++..+... ..+
T Consensus 214 ---~l~~----k~~ge--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 ---EFVQ----KYLGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred ---HHHH----Hhcch--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 1111 00000 0111122 22233468899999998532 1133344433322 234
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||+||.... ++..+.++-.++|........... + -....+++.+.|..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-E--VDLEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--cCHHHHHHHcCCCC
Confidence 56777776543 556677777777765553322111 1 12455666666653
No 84
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.52 E-value=8.2e-05 Score=69.17 Aligned_cols=267 Identities=13% Similarity=0.127 Sum_probs=143.1
Q ss_pred hhhHHHHHHHhhC--CCcEEEEecCCCCchhHHH-HHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhc--
Q 040862 67 VESRVEEIESLLG--AAPLLGIWGIGGIGKTTIA-RVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLK-- 141 (381)
Q Consensus 67 R~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-- 141 (381)
|.+.+++|..||. ...+|+|+||.|+||+.|+ .++...-. .+.+.++..... ..+-..++..+..+++-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~-----~vL~IDC~~i~~-ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK-----NVLVIDCDQIVK-ARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC-----CEEEEEChHhhh-ccChHHHHHHHHHhcCCCc
Confidence 5677899999998 5679999999999999999 66654311 133444444333 23333333333333321
Q ss_pred ---------------------c-CCCCCCHHH------------H----------------------HHHhCCCeEEEEE
Q 040862 142 ---------------------D-VNVIPHIDL------------N----------------------FRRLSRRKVLIVL 165 (381)
Q Consensus 142 ---------------------~-~~~~~~~~~------------l----------------------~~~l~~~~~Llvl 165 (381)
. .......+. + ...-...+-+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1 111111111 1 1111123568999
Q ss_pred eCCCC-----------hhhHHHHHhccCCCCCCCeEEEEecccc------------------CCCCCHHHHHHHHHHhhc
Q 040862 166 DDVTC-----------FNQIESLVGSLDRLLPESRILITTRNKQ------------------MKGFGDDHALELFNRHAF 216 (381)
Q Consensus 166 Ddv~~-----------~~~~~~l~~~~~~~~~~~~iliTsr~~~------------------l~~L~~~ea~~l~~~~~~ 216 (381)
||+.. ..+|...+.. .+-.+||+.|-+.. |.-.+++.|.+++..++.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 99932 1223333322 34457887776654 777899999999998885
Q ss_pred cCCCC------------------ChhHHHHHHHHHHHhCCChHHHHHHHHHhccC-C-HHHHHHHHHHHHhcccccHHHH
Q 040862 217 RQNLV------------------DVDYKELSDKVINYAQGVPLALKILGCYLFER-K-REVWENAIKKLKNFLHQNILDV 276 (381)
Q Consensus 217 ~~~~~------------------~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~-~-~~~~~~~~~~l~~~~~~~~~~~ 276 (381)
..... ...........++..||--.=|..+++.++.. + ...++.. ..+++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~i-------I~qsa~eI 303 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEI-------ISQSASEI 303 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHH-------HHHHHHHH
Confidence 43111 01244567788899999999999999998762 2 2222222 22333333
Q ss_pred HHhhhc-------CCChhhhhhhhhhhcccC--CcCHHHHHHHHHHcCC--ChhhhHHHHhhCCceeEcC-CCc---EEe
Q 040862 277 LKISYD-------GLDNDEKNIFLDVACFFK--GEDVYLAKKFLEASGF--YPEIGISILVDKSLIAINP-YNK---ITM 341 (381)
Q Consensus 277 l~~~~~-------~L~~~~~~~l~~la~~~~--~~~~~~l~~~~~~~~~--~~~~~l~~L~~~~Li~~~~-~~~---~~~ 341 (381)
.+.-+. ..+-...+++..+-.+.. .++...+ +..+-+ ..+..|..|++..||.... +|+ ++-
T Consensus 304 ~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~l---l~~~lFk~~~E~~L~aLe~aeLItv~~~~G~p~~I~p 380 (431)
T PF10443_consen 304 RKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNEL---LLSPLFKGNDETALRALEQAELITVTTDNGRPSTIRP 380 (431)
T ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHH---HcccccCCCChHHHHHHHHCCcEEEEecCCcCCeeEC
Confidence 333332 111122333333333322 2333321 112222 2466999999999998543 444 443
Q ss_pred cHHHHHHHHHHH
Q 040862 342 HDLLQELGREIV 353 (381)
Q Consensus 342 H~lv~~~~~~~~ 353 (381)
-.-+...|-+++
T Consensus 381 GkPvy~aAF~~L 392 (431)
T PF10443_consen 381 GKPVYRAAFKRL 392 (431)
T ss_pred CChhHHHHHHHH
Confidence 333334444443
No 85
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=8.3e-06 Score=81.09 Aligned_cols=176 Identities=20% Similarity=0.208 Sum_probs=103.7
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..++|.+...+.|..++.. .+.+.++|++|+||||+|+.+++.+........-. . ..+..+.++.+...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~----~----~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP----E----PCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC----C----CCcccHHHHHHhcC
Confidence 6789999999999998883 35678999999999999999998764321100000 0 11111222222211
Q ss_pred Hhcc-----CCCCC---CHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIP---HIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~---~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ..... .+.++...+ .+..-++|||+++.. +....|+..+......+.+|++|.+..
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 1110 00011 112222222 134568999999754 456677776665445555555554332
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.+++.++....+.+.+......- .++.+..+++.++|.+..+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 678888888888877664432221 23668889999999886554433
No 86
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=3e-06 Score=78.51 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=113.2
Q ss_pred CCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccc-eEEEEeccccccCCCChHHHH
Q 040862 60 LQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEG-SCFLENVREESQKPGGLASLQ 132 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~ 132 (381)
.+..++||+.|+..+.+++. ..+-+-|.|-+|.|||.+...++.+....... ...+.+... ......+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHHH
Confidence 34789999999999999987 67788999999999999999999887665544 323333332 23345555
Q ss_pred HHHHHHHhcc-CCCCCC---HHHHHHHhCC--CeEEEEEeCCCChhh--HHHHHhccCCC-CCCCeEEEEecccc-----
Q 040862 133 QKLLSEVLKD-VNVIPH---IDLNFRRLSR--RKVLIVLDDVTCFNQ--IESLVGSLDRL-LPESRILITTRNKQ----- 198 (381)
Q Consensus 133 ~~l~~~~~~~-~~~~~~---~~~l~~~l~~--~~~LlvlDdv~~~~~--~~~l~~~~~~~-~~~~~iliTsr~~~----- 198 (381)
..++..+... ...... ...+.....+ ..+|+|+|++|.... -..+...+.|. -+++++|+..-...
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 6666665333 111111 2223344432 479999999864321 11111111111 24555443322111
Q ss_pred ------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 040862 199 ------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLF 251 (381)
Q Consensus 199 ------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~ 251 (381)
.+|.+.++-.++|..+...... ....+..++.+++++.|.---+..+....+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 7889999999999988744332 223344566667777766655555544443
No 87
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-06 Score=76.62 Aligned_cols=158 Identities=17% Similarity=0.296 Sum_probs=93.5
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+=|-+.++++|.+... .++-|.+|||||.|||-||++++++.... |+.-+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc-------
Confidence 667899999999999765 68899999999999999999999875433 222111
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHH-HhCCCeEEEEEeCCCC----------------hhhHHHHHhccCCCC--CC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFR-RLSRRKVLIVLDDVTC----------------FNQIESLVGSLDRLL--PE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~----------------~~~~~~l~~~~~~~~--~~ 187 (381)
.++.+ ...++ ...-+.++.. +-.+.|++|++|.+|. ...+-+|++.+..+. .+
T Consensus 219 --SElVq----KYiGE--GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQ----KYIGE--GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHH----HHhcc--chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 11221 12221 1111222222 2346899999999842 123555666666554 34
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHH
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLA 242 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 242 (381)
.+||..|.... ++.-+.+.=.++|.-+. +......+ =..+.+++.|.|.--|
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt-rkM~l~~d--vd~e~la~~~~g~sGA 359 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT-RKMNLADD--VDLELLARLTEGFSGA 359 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh-hhccCccC--cCHHHHHHhcCCCchH
Confidence 58887765544 33333444445555444 32222211 1266777888876543
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.51 E-value=2.3e-06 Score=81.59 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=86.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.|+|++|+|||+|+..+++.+.+.. ...+.+.+.. ++...+...+.. .....+...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~----------~~~~~~~~~~~~-----~~~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE----------KFTNDFVNALRN-----NKMEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH----------HHHHHHHHHHHc-----CCHHHHHHHHHh-
Confidence 35789999999999999999999876653 2333333221 222333333321 123344444443
Q ss_pred eEEEEEeCCCChh----hHHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCFN----QIESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~~----~~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
.-+|+|||++... ..+.++..+... ..+..+|+|+.... +++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488999996421 122233322211 23456888876532 667777778888777
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
.+......- .++.++.|++.+.|++-.+.-+-
T Consensus 280 ~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 280 KAEEEGLEL--PDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHH
Confidence 764433221 24667777788777776554443
No 89
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.51 E-value=1.1e-05 Score=69.59 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=41.1
Q ss_pred CcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++|.+.+.+.|.+... ....|.++|..|+|||+|++.+.+.+...
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 789999999999887644 67789999999999999999999987665
No 90
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.51 E-value=1.4e-06 Score=90.37 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=40.9
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++||+.++.++...|. ....+.++|++|+|||+++..+++++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 679999999999999987 5567789999999999999999997654
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.6e-05 Score=79.13 Aligned_cols=173 Identities=14% Similarity=0.150 Sum_probs=101.2
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.|...+.. .+...++|+.|+||||+|..++..+.......- .. ..+...-+..+...
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~-----~~----~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD-----GE----ACNECESCVAFNEQ 87 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-----CC----CCCcchHHHHHhcC
Confidence 6889999999999999873 456789999999999999999886531100000 00 00000000000000
Q ss_pred Hhc-----cCCCCCCHHH---HHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
... +.......+. +...+. +.+=++|+|+++.. .....|+..+......+.+|++|....
T Consensus 88 ~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~t 167 (614)
T PRK14971 88 RSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPT 167 (614)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHH
Confidence 000 0000011112 111111 24448899999754 356677776665556666666554333
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+++++.++....+.+.+...+... .++.+..|++.++|...-+..
T Consensus 168 I~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 168 ILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred HHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 888999999999887764443222 246688899999998764433
No 92
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.3e-06 Score=83.31 Aligned_cols=168 Identities=13% Similarity=0.229 Sum_probs=99.8
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+..++.|...+. -.+...++||+|+|||++|+.++..+-.......+ .....+......
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~------------~pC~~C~~~~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL------------EPCQECIENVNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC------------CchhHHHHhhcC
Confidence 678999999999999987 25567899999999999999999865321110000 000000000000
Q ss_pred ---Hh-ccCCC---CCCHHHHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc------
Q 040862 139 ---VL-KDVNV---IPHIDLNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ------ 198 (381)
Q Consensus 139 ---~~-~~~~~---~~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~------ 198 (381)
+. ..... ...+..+.+.+. ++.-++|+|+++.. ..+..|+..+....+.+.+|++|....
T Consensus 86 ~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 86 SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00 00000 011122222222 45568999999754 456777776665555666565554332
Q ss_pred --------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 --------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 --------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+.+...+...+... ..+.+..+++.++|.+.-+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 888999999988887654333221 2456888999999987544
No 93
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.49 E-value=4.6e-06 Score=80.36 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=40.0
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..+.|.+.+++++.+.+. .++-+.|+||||+|||++|+.+++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 668889999999988753 45679999999999999999999987654
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.49 E-value=2.3e-06 Score=78.80 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=67.4
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.+..++. -+..+.++|++|+|||++|..+++..... +...+... . ... ..+..+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~----~~~i~~~~----~-~~~-~i~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE----VLFVNGSD----C-RID-FVRNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc----ceEeccCc----c-cHH-HHHHHHHH
Confidence 688999999999999887 24567779999999999999999876322 12222221 0 111 11111111
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh---hhHHHHHhccCCCCCCCeEEEEeccc
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF---NQIESLVGSLDRLLPESRILITTRNK 197 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~l~~~~~~~~~~~~iliTsr~~ 197 (381)
..... .....+-++|+|+++.. +....+...+.....++++|+||...
T Consensus 91 ~~~~~-----------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 91 FASTV-----------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHhh-----------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11000 01134558999999754 22233333344445677888888653
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.48 E-value=2.2e-06 Score=88.60 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=41.2
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++||+.++.++...|. ....+.++|++|+|||++|..++.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999988 5567889999999999999999998644
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.47 E-value=2.5e-06 Score=82.38 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=89.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
.+.+.|+|++|+|||+|+..+++.+.++++ ..+.+.+.. .+...+...+.. .....+.+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~----------~~~~~~~~~~~~-----~~~~~~~~~~~~- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE----------KFTNDFVNALRN-----NTMEEFKEKYRS- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH----------HHHHHHHHHHHc-----CcHHHHHHHHhc-
Confidence 357899999999999999999998876643 233333222 222233222211 123344444443
Q ss_pred eEEEEEeCCCChh----hHHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCFN----QIESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~~----~~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
.-+|+|||++... ..+.++..+... ..+..+++|+.... +++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4489999995321 122333322111 23456888876542 678888888888888
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHH
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 249 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~ 249 (381)
.+...... ..++.++.|++.+.|..-.+.-+-..
T Consensus 292 ~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~~~l~~ 325 (450)
T PRK00149 292 KAEEEGID--LPDEVLEFIAKNITSNVRELEGALNR 325 (450)
T ss_pred HHHHcCCC--CCHHHHHHHHcCcCCCHHHHHHHHHH
Confidence 77543221 22467888888888887766544333
No 97
>PRK06620 hypothetical protein; Validated
Probab=98.46 E-value=2.5e-06 Score=73.57 Aligned_cols=24 Identities=29% Similarity=0.183 Sum_probs=21.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+.|+|++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999887654
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.5e-05 Score=78.44 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=104.0
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|-+..++.|...+.. .+...++|++|+||||+|+.+++.+-..-..... +.+....++.+...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~----------pC~~C~~C~~i~~~ 85 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM----------PCGECSSCKSIDND 85 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC----------CCccchHHHHHHcC
Confidence 6889999999999999872 4567899999999999999999875321000000 00000000111000
Q ss_pred Hhc-----cCCCCCCHHH---HHHH-----hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVNVIPHIDL---NFRR-----LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~~~~~~~~---l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
... .......++. +.+. ..++.-++|+|+++.. .....|+..+....+.+.+|++|.+..
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 000 0000111222 1111 1245568999999754 356777777766556666666664432
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+.+++.++..+.+.+.+...+.. ..++.+..|++.++|.+..+...
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78899999998888776444322 22577888999999988655443
No 99
>PLN03194 putative disease resistance protein; Provisional
Probab=98.44 E-value=2.3e-07 Score=75.95 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=39.9
Q ss_pred CcEEEeEeeecCcccccccc-cchHHHHHHHHhhcHHHHHHHHHHHHHHhcccCCccCC
Q 040862 4 AQIAIPVFYRVDPSHVRKQI-GSFGVSFSELEEKFPEKMQRWRSALTEAANLSGFDSLQ 61 (381)
Q Consensus 4 ~~~~~pv~~~v~p~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 61 (381)
+..|+||||+|+|++||+|. +. ...+.+++|+.+|.+++++.|+....
T Consensus 109 ~~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~~ 157 (187)
T PLN03194 109 KKRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFDS 157 (187)
T ss_pred CCEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCCC
Confidence 45799999999999999973 33 13467999999999999999987643
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=9.4e-06 Score=77.68 Aligned_cols=141 Identities=11% Similarity=0.141 Sum_probs=80.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeE
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKV 161 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 161 (381)
..+.|+|++|+|||+|++.+++.+......++++. . ..+...+...+.. .....+.....+ .-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~----------~~f~~~~~~~l~~-----~~~~~f~~~~~~-~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S----------ELFTEHLVSAIRS-----GEMQRFRQFYRN-VD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------HHHHHHHHHHHhc-----chHHHHHHHccc-CC
Confidence 56899999999999999999998765433233332 1 1222233322221 122334444443 44
Q ss_pred EEEEeCCCChh----hHHHHHhccCC-CCCCCeEEEEecccc---------------------CCCCCHHHHHHHHHHhh
Q 040862 162 LIVLDDVTCFN----QIESLVGSLDR-LLPESRILITTRNKQ---------------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 162 LlvlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~~~ 215 (381)
+|++||++... ..+.++..+.. ...+..||+||.... +++++.++-.+++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 88889985321 12222222211 023557888886532 77788888888887776
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 216 FRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
...... ..++.++-|+..+.++--
T Consensus 285 ~~~~~~--l~~evl~~la~~~~~dir 308 (445)
T PRK12422 285 EALSIR--IEETALDFLIEALSSNVK 308 (445)
T ss_pred HHcCCC--CCHHHHHHHHHhcCCCHH
Confidence 443321 224666667777776653
No 101
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.44 E-value=2.2e-06 Score=76.88 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=92.1
Q ss_pred CcccchhhHHHH---HHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRVEE---IESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l~~---l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
+++||.+..+.+ |..++. ..+-+.+||++|+||||||+.++..-+.+- ++++.+........+..++..+-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~a- 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQA- 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHH-
Confidence 455555554433 333333 577889999999999999999998766542 33333332222122222222111
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEE--Eecccc--------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILI--TTRNKQ-------------- 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili--Tsr~~~-------------- 198 (381)
. -...+.+++.+|++|+++..+ +-+.|++.+. +|.-++| ||-++.
T Consensus 214 ---q-----------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 214 ---Q-----------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred ---H-----------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHHhcccee
Confidence 1 112345689999999996544 4555655543 4444443 444443
Q ss_pred -CCCCCHHHHHHHHHHhhc---cCC----CCCh----hHHHHHHHHHHHhCCChH
Q 040862 199 -MKGFGDDHALELFNRHAF---RQN----LVDV----DYKELSDKVINYAQGVPL 241 (381)
Q Consensus 199 -l~~L~~~ea~~l~~~~~~---~~~----~~~~----~~~~~~~~i~~~~~G~PL 241 (381)
|++|..++...++.+... ... ..+. .....++-++..|+|-..
T Consensus 277 vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999999999998887331 111 1111 234567778888888543
No 102
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.42 E-value=2.4e-06 Score=67.64 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEecCCCCchhHHHHHHHhhhc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 103
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=1.1e-05 Score=79.59 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=101.8
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.|.+.+. -.+...++|++|+|||++|+.++..+....... .. +.+....+..+...
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~----pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GE----PCNECEICKAITNG 85 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CC----CCCccHHHHHHhcC
Confidence 689999999999999987 355677899999999999999998653211000 00 11111111111111
Q ss_pred Hhcc-----CCCCCCHH---HHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPHID---LNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~~~---~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
...+ ......++ .+.+.. .++.-++|||+++.. ..+..|+..+......+.+|++|....
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 0000 00001112 222221 245668899999754 457777776665445555565554333
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.+++.++..+.+...+...+..- .++.+..|++.++|.+.-.
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 778899999988887764433222 2466788889999887644
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.41 E-value=8.2e-06 Score=73.63 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccc---cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCC
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNF---EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSR 158 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 158 (381)
..+.++|++|+|||++|+.++..+.... ...++..+. .++ ...+.+.. ......+....
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----------~~l----~~~~~g~~--~~~~~~~~~~a-- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----------DDL----VGQYIGHT--APKTKEILKRA-- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----------HHH----hHhhcccc--hHHHHHHHHHc--
Confidence 3688999999999999998887654321 111222211 111 11111111 01112222222
Q ss_pred CeEEEEEeCCCCh-----------hhHHHHHhccCCCCCCCeEEEEecccc--------------------CCCCCHHHH
Q 040862 159 RKVLIVLDDVTCF-----------NQIESLVGSLDRLLPESRILITTRNKQ--------------------MKGFGDDHA 207 (381)
Q Consensus 159 ~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsr~~~--------------------l~~L~~~ea 207 (381)
.+-+|+||+++.. +....++..+.....+.+||+++.... +++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3368999999632 234555555544445567777764321 777888888
Q ss_pred HHHHHHhhc
Q 040862 208 LELFNRHAF 216 (381)
Q Consensus 208 ~~l~~~~~~ 216 (381)
.+++...+.
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 888776653
No 105
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.41 E-value=4e-06 Score=79.59 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=89.0
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|.+.++++|.+.+. .++.+.|+|++|+|||++|+.+++.....|- .+. ...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cch------
Confidence 456899999999888763 4567899999999999999999997755431 111 100
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~ 187 (381)
+... ..+. ....+.. +.....+.+++|+||+++.. ..+..++..+... ..+
T Consensus 253 ----L~~k----~~Ge--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 ----LIQK----YLGD--GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred ----hhhh----hcch--HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 0000 0000 0001111 22233467889999997421 1123333333221 235
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||+||.... +++.+.++..++|..+........ + -....++..+.|.-
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~s 389 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELS 389 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCC
Confidence 56777776433 677788888888887663332211 1 12455666666544
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=6.6e-06 Score=80.40 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=90.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.|+|.+|+|||.|+..+++.+...+ ...+.+... .++...+...+.. .....+.+.+.+-
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~-----~~~~~f~~~y~~~ 378 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRD-----GKGDSFRRRYREM 378 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHh-----ccHHHHHHHhhcC
Confidence 35689999999999999999999876532 233333322 2233333322221 1233344444433
Q ss_pred eEEEEEeCCCCh---hh-HHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCF---NQ-IESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~---~~-~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
-+|+|||++.. +. -+.|+..+... ..+..|||||.... |++.+.+.-.+++.+
T Consensus 379 -DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 -DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred -CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 47889999532 11 12233322211 23567888887643 778888888888888
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
.+......- .++.++-|++.+.++.-.|.-+...|
T Consensus 458 ka~~r~l~l--~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 458 KAVQEQLNA--PPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred HHHhcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 775443222 25778888888888766665544433
No 107
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.7e-05 Score=78.56 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=101.1
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|.+...+.|.+.+.. .+...++|++|+||||+|+.+++.+...-... .. +.+....+..+...
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-----~~-----~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-----AE-----PCNVCPPCVEITEG 85 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-----CC-----CCCccHHHHHHhcC
Confidence 6889999999999999872 45668999999999999999998653210000 00 00000111111000
Q ss_pred Hhc-----cCC---CCCCHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLK-----DVN---VIPHIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~-----~~~---~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
... +.. ....+..+...+ .++.-++|||+++.. .....|+..+....+++.+|++|.+..
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 000 000 001111222222 134458999999754 346677776665556777766664433
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH-HHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKIL 246 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~ 246 (381)
+++++.++....+...+...+..- .++.+..|++.++|... ++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 778999998888877664433221 24678889999999774 44443
No 108
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.39 E-value=1.6e-05 Score=75.18 Aligned_cols=228 Identities=17% Similarity=0.089 Sum_probs=129.7
Q ss_pred chhhHHHHHHHhhCCCc-EEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCC
Q 040862 66 GVESRVEEIESLLGAAP-LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVN 144 (381)
Q Consensus 66 GR~~~l~~l~~~l~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 144 (381)
.|...+.++.+.+...+ +++|.||.++||||+++.+.....+. .+++........ . ..+ .......
T Consensus 21 ~~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-~---~~l-~d~~~~~----- 87 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-R---IEL-LDLLRAY----- 87 (398)
T ss_pred hHHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-h---hhH-HHHHHHH-----
Confidence 34455666666666344 99999999999999997777665554 444443322111 1 111 1111111
Q ss_pred CCCCHHHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc------------------CCCCCHHH
Q 040862 145 VIPHIDLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ------------------MKGFGDDH 206 (381)
Q Consensus 145 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~------------------l~~L~~~e 206 (381)
...-..++..++||.|.....|...+..+...++. ++++|+.+.. +.||+..|
T Consensus 88 --------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 88 --------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred --------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 11111166899999999999999988888766666 7888877654 88899888
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHHHHHHHhcccccHHHHHHhhhcCCCh
Q 040862 207 ALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENAIKKLKNFLHQNILDVLKISYDGLDN 286 (381)
Q Consensus 207 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 286 (381)
-..+.. .......... .-+-.-.+||.|.++..-...-. ....+...... ++....-..=..
T Consensus 159 fl~~~~-----~~~~~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~---------~~~~~~~~~~~---Di~~~~~~~~~~ 220 (398)
T COG1373 159 FLKLKG-----EEIEPSKLEL-LFEKYLETGGFPESVKADLSEKK---------LKEYLDTILKR---DIIERGKIENAD 220 (398)
T ss_pred HHhhcc-----cccchhHHHH-HHHHHHHhCCCcHHHhCcchhhH---------HHHHHHHHHHH---HHHHHcCcccHH
Confidence 877543 1111111111 23334567999988744221110 00001111111 111111100113
Q ss_pred hhhhhhhhhhc-ccCCcCHHHHHHHHH-HcCCChhhhHHHHhhCCceeE
Q 040862 287 DEKNIFLDVAC-FFKGEDVYLAKKFLE-ASGFYPEIGISILVDKSLIAI 333 (381)
Q Consensus 287 ~~~~~l~~la~-~~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~~Li~~ 333 (381)
..+.++..++. .+..++...+...+. -+.......++.|.+..++..
T Consensus 221 ~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 221 LMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 55666655554 456789999888884 444445567888888888763
No 109
>PRK12377 putative replication protein; Provisional
Probab=98.37 E-value=1.4e-05 Score=70.20 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
+...+.|+|++|+|||+||..+++.+......++++. . .++...+-..... ......+.+.+. +
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-~----------~~l~~~l~~~~~~----~~~~~~~l~~l~-~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-V----------PDVMSRLHESYDN----GQSGEKFLQELC-K 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-H----------HHHHHHHHHHHhc----cchHHHHHHHhc-C
Confidence 4578999999999999999999998876544344433 1 2233333322211 112223444443 4
Q ss_pred eEEEEEeCCCCh----hhHHHHHhccCC-CCCCCeEEEEec
Q 040862 160 KVLIVLDDVTCF----NQIESLVGSLDR-LLPESRILITTR 195 (381)
Q Consensus 160 ~~LlvlDdv~~~----~~~~~l~~~~~~-~~~~~~iliTsr 195 (381)
.-||||||+... ...+.+...+.. ....-.+||||.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 458999999322 122233333321 123345788876
No 110
>CHL00181 cbbX CbbX; Provisional
Probab=98.37 E-value=1.6e-05 Score=71.83 Aligned_cols=117 Identities=13% Similarity=0.227 Sum_probs=63.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccc-c-c-ceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCC
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRN-F-E-GSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSR 158 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 158 (381)
..+.++|+||+|||++|+.++..+... + . ..+..++ ..++ .....+.. ......+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----------~~~l----~~~~~g~~--~~~~~~~l~~a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----------RDDL----VGQYIGHT--APKTKEVLKKA-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----------HHHH----HHHHhccc--hHHHHHHHHHc--
Confidence 358899999999999999998865321 1 1 1111111 1111 11111110 01111222222
Q ss_pred CeEEEEEeCCCCh-----------hhHHHHHhccCCCCCCCeEEEEecccc--------------------CCCCCHHHH
Q 040862 159 RKVLIVLDDVTCF-----------NQIESLVGSLDRLLPESRILITTRNKQ--------------------MKGFGDDHA 207 (381)
Q Consensus 159 ~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~~~~iliTsr~~~--------------------l~~L~~~ea 207 (381)
..-+|+||+++.. +....++..+.....+..||+++.... +++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2349999999642 234555555544445567777765321 667777777
Q ss_pred HHHHHHhhc
Q 040862 208 LELFNRHAF 216 (381)
Q Consensus 208 ~~l~~~~~~ 216 (381)
.+++...+.
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 777776653
No 111
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.33 E-value=3.7e-06 Score=85.20 Aligned_cols=45 Identities=31% Similarity=0.353 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++||+.++.++...|. ....+.|+|++|+|||++|+.+++.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 679999999999999888 456778999999999999999998653
No 112
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.32 E-value=1.1e-06 Score=73.50 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=56.5
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhC
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLS 157 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 157 (381)
+.+...+.|+|++|+|||.||..+++.+..+-..+.|+. . .++...+ .... .......+.+.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~----------~~L~~~l----~~~~-~~~~~~~~~~~l~ 107 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-A----------SDLLDEL----KQSR-SDGSYEELLKRLK 107 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-H----------HHHHHHH----HCCH-CCTTHCHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-c----------Cceeccc----cccc-cccchhhhcCccc
Confidence 346788999999999999999999987665433344442 2 2333333 2221 1122333445554
Q ss_pred CCeEEEEEeCCCChh----hHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHH
Q 040862 158 RRKVLIVLDDVTCFN----QIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFN 212 (381)
Q Consensus 158 ~~~~LlvlDdv~~~~----~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~ 212 (381)
+- =||||||+.... ..+.+...+...-.+..+||||. ++.++..+.+.
T Consensus 108 ~~-dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN------~~~~~l~~~~~ 159 (178)
T PF01695_consen 108 RV-DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSN------LSPSELEEVLG 159 (178)
T ss_dssp TS-SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEES------S-HHHHHT---
T ss_pred cc-cEecccccceeeecccccccchhhhhHhhcccCeEeeCC------CchhhHhhccc
Confidence 43 478899994321 11222222211111236888887 46666655554
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.6e-05 Score=74.06 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=84.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccce-EEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGS-CFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.|+|+.|.|||.|++.+++...+..+.. +.+. ........+...+.. ...+.+++.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----------~se~f~~~~v~a~~~-----~~~~~Fk~~y--~ 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----------TSEDFTNDFVKALRD-----NEMEKFKEKY--S 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----------cHHHHHHHHHHHHHh-----hhHHHHHHhh--c
Confidence 78999999999999999999999877765533 3222 112333333333222 2334445544 2
Q ss_pred eEEEEEeCCCCh----hhHHHHHhccCCC-CCCCeEEEEecccc---------------------CCCCCHHHHHHHHHH
Q 040862 160 KVLIVLDDVTCF----NQIESLVGSLDRL-LPESRILITTRNKQ---------------------MKGFGDDHALELFNR 213 (381)
Q Consensus 160 ~~LlvlDdv~~~----~~~~~l~~~~~~~-~~~~~iliTsr~~~---------------------l~~L~~~ea~~l~~~ 213 (381)
-=++++||++-. ..-++++..++.. ..+-.||+|++... +.+.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 338899999431 2233333333321 23448999997665 778888888888877
Q ss_pred hhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 214 HAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
.+.......+ ++...-+++....+---+
T Consensus 256 ka~~~~~~i~--~ev~~~la~~~~~nvReL 283 (408)
T COG0593 256 KAEDRGIEIP--DEVLEFLAKRLDRNVREL 283 (408)
T ss_pred HHHhcCCCCC--HHHHHHHHHHhhccHHHH
Confidence 6543332221 345555555555444333
No 114
>CHL00176 ftsH cell division protein; Validated
Probab=98.31 E-value=2e-05 Score=78.48 Aligned_cols=161 Identities=14% Similarity=0.189 Sum_probs=92.6
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
.+++|.++..+++.+.+. .++-+.|+|++|+|||+||+.++...... ++.....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p----~i~is~s-------- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP----FFSISGS-------- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eeeccHH--------
Confidence 668899888888777653 24579999999999999999999865322 1111111
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCCC
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPES 188 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~~ 188 (381)
++.... .. .....+.. +.......+++|+||+++.. +.+..++..+... ..+.
T Consensus 251 --~f~~~~----~g--~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 251 --EFVEMF----VG--VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred --HHHHHh----hh--hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 111000 00 00111222 34445578999999999533 1234444443322 2344
Q ss_pred eEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC-ChHHHHH
Q 040862 189 RILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKI 245 (381)
Q Consensus 189 ~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 245 (381)
.||.||.... ++..+.++-.++++.++...... .......+++.+.| .+--|..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCCCHHHHHH
Confidence 5555554422 66678888888888777442211 12346677888777 4444433
No 115
>PRK08181 transposase; Validated
Probab=98.29 E-value=6.3e-06 Score=73.29 Aligned_cols=104 Identities=24% Similarity=0.241 Sum_probs=59.0
Q ss_pred HhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 040862 76 SLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRR 155 (381)
Q Consensus 76 ~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 155 (381)
+++.....+.|+|++|+|||.||..+++....+...+.|+. ..++...+.... ...........
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~-----~~~~~~~~l~~ 164 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVAR-----RELQLESAIAK 164 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHH-----hCCcHHHHHHH
Confidence 45667788999999999999999999987765533334432 123333332221 11223333344
Q ss_pred hCCCeEEEEEeCCCCh----hhHHHHHhccCCCCCCCeEEEEecc
Q 040862 156 LSRRKVLIVLDDVTCF----NQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 156 l~~~~~LlvlDdv~~~----~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
+. +.-||||||+... .....++..+.....+..+||||..
T Consensus 165 l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 165 LD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred Hh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 43 3449999999422 2222333333211123468898884
No 116
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.29 E-value=9.4e-05 Score=63.68 Aligned_cols=173 Identities=12% Similarity=0.160 Sum_probs=102.0
Q ss_pred HHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCC-C
Q 040862 70 RVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVI-P 147 (381)
Q Consensus 70 ~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 147 (381)
.+..+..... +.+++.++|+-|+|||.+.+.+...+-++ .++.+. . +........+...++..+..+.... .
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~-i---~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVV-I---DKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEE-e---cCcchhHHHHHHHHHHHhccCccchhH
Confidence 3444444455 56699999999999999999555444332 122211 1 1113444566666666655521111 1
Q ss_pred -CHHH----HHHHh-CCCe-EEEEEeCCCCh--h---hHHHHHhccCCCCCCCeEEEEecccc-----------------
Q 040862 148 -HIDL----NFRRL-SRRK-VLIVLDDVTCF--N---QIESLVGSLDRLLPESRILITTRNKQ----------------- 198 (381)
Q Consensus 148 -~~~~----l~~~l-~~~~-~LlvlDdv~~~--~---~~~~l~~~~~~~~~~~~iliTsr~~~----------------- 198 (381)
.... +.... ++++ +.+++|+.... . .+..|.+.-......-+|+.......
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEE
Confidence 1111 22222 2444 99999998532 2 23333333333333334555444332
Q ss_pred ----CCCCCHHHHHHHHHHhhccCCCCCh-hHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 199 ----MKGFGDDHALELFNRHAFRQNLVDV-DYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 199 ----l~~L~~~ea~~l~~~~~~~~~~~~~-~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
++|++.++...+++.+..+...+.+ ..++....|.....|.|.++..++.
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999988765543332 2356788899999999999987664
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.29 E-value=8.5e-05 Score=74.20 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.++|++..++.+.+.+. ....+.|+|++|+||||||+.+.+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 678999999999887776 45679999999999999999988754
No 118
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=6.8e-06 Score=73.40 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=58.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCe
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRK 160 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 160 (381)
...+.|+|++|+|||.||..+++.+..+...++++ +. .+++..+....... .......+.+.+.+-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~----------~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NF----------PQLLNRIKSTYKSS--GKEDENEIIRSLVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EH----------HHHHHHHHHHHhcc--ccccHHHHHHHhcCCC
Confidence 34689999999999999999999886653323333 22 23333443332221 1122334556666555
Q ss_pred EEEEEeCCCC--hh--hHHHHHhccCC-CCCCCeEEEEecc
Q 040862 161 VLIVLDDVTC--FN--QIESLVGSLDR-LLPESRILITTRN 196 (381)
Q Consensus 161 ~LlvlDdv~~--~~--~~~~l~~~~~~-~~~~~~iliTsr~ 196 (381)
||||||+.. .. ....+...+.. ...+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999932 22 22223332221 1345678998873
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.26 E-value=1.5e-05 Score=77.98 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=89.4
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
.+++|-+...+++.+.+. .++-+.++||+|+|||+||+.++...... ++..+.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----~~~i~~--------- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSISG--------- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC----eeeccH---------
Confidence 667888877666665432 24568999999999999999999865332 111111
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCCC--CCC
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRLL--PES 188 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~~ 188 (381)
..+.. ...+ .....+.. +.......+.+|+||+++.. ..+..++..+.... .+.
T Consensus 122 -~~~~~----~~~g--~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 122 -SDFVE----MFVG--VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred -HHHHH----HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11110 0000 01111222 23334467899999999542 11233443333222 233
Q ss_pred eEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCC-hHHHHHHH
Q 040862 189 RILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILG 247 (381)
Q Consensus 189 ~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~ 247 (381)
.||.||.... ++..+.++-.+++........... ......+++.+.|. +--|..+.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence 4555554432 667788888888887764332221 12356788888774 44444433
No 120
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.7e-05 Score=71.56 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=56.8
Q ss_pred eEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCCh
Q 040862 160 KVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDV 223 (381)
Q Consensus 160 ~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~ 223 (381)
+-++|||+++. .+....++..+.+..+++.+|++|.+.. +.+++.+++.+.+...... .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--~--- 181 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--S--- 181 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--C---
Confidence 33557799975 4457777777776667778888777664 8899999999998765311 1
Q ss_pred hHHHHHHHHHHHhCCChHHHHHH
Q 040862 224 DYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 224 ~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
.++.+..++..++|.|+....+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1344667889999999754433
No 121
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=7.2e-05 Score=68.34 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=102.4
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccc---------------ccceEEEEecccccc
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN---------------FEGSCFLENVREESQ 123 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~~ 123 (381)
.+++|.+...+.|...+.. .+...++|+.|+||+++|..+++.+-.. ++...|+........
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4689999999999999872 5789999999999999999998864221 222333321100000
Q ss_pred CCCChHHHHHHHHHHHh--ccCCCC---CCHHHHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEE
Q 040862 124 KPGGLASLQQKLLSEVL--KDVNVI---PHIDLNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRIL 191 (381)
Q Consensus 124 ~~~~~~~l~~~l~~~~~--~~~~~~---~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~il 191 (381)
. ... .......+ ...... ..+..+.+.+. +.+-++|+|+++.. .....++..+-+.. .+.+|
T Consensus 84 -~-~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 84 -K-LIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred -c-ccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0 000 00000000 000001 11222333333 35568999999754 34566766665544 55666
Q ss_pred EEecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 192 ITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 192 iTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
++|.+.. +++++.++..+.+.+...... .. .....++..++|.|.....+
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-LN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-ch----hHHHHHHHHcCCCHHHHHHH
Confidence 5555443 889999999999987652211 11 12467889999999765443
No 122
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.23 E-value=8.1e-05 Score=63.00 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=43.1
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEE
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCF 114 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~ 114 (381)
.++||-++-+++|.-+.. +.+.+.|.||||+||||-+..+++.+-. .|...+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 688999999999988776 7788999999999999999999987644 3443343
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.21 E-value=3.4e-05 Score=69.89 Aligned_cols=147 Identities=18% Similarity=0.310 Sum_probs=92.9
Q ss_pred CCcccchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHH
Q 040862 61 QNELVGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKL 135 (381)
Q Consensus 61 ~~~~vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 135 (381)
.+.|-+|+.++..|..++. -+..|.|+|.+|.|||.+.+++.+....+ .+|+.... ...+..+...+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~e-----cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVE-----CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHH-----hccHHHHHHHH
Confidence 4689999999999999998 24466899999999999999999877333 55654332 56677888888
Q ss_pred HHHHhcc--CCCCCC-----HHH----HHH--HhC--CCeEEEEEeCCCChhhHHH-----HHhccCCCCCCCeEEEEec
Q 040862 136 LSEVLKD--VNVIPH-----IDL----NFR--RLS--RRKVLIVLDDVTCFNQIES-----LVGSLDRLLPESRILITTR 195 (381)
Q Consensus 136 ~~~~~~~--~~~~~~-----~~~----l~~--~l~--~~~~LlvlDdv~~~~~~~~-----l~~~~~~~~~~~~iliTsr 195 (381)
+...... +..... +.. +.+ ... ++.++||+||++..++.+. ++............|+++.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 8887422 111111 111 111 122 4689999999976654332 2211111112233344433
Q ss_pred ccc-----------------CCCCCHHHHHHHHHHhh
Q 040862 196 NKQ-----------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 196 ~~~-----------------l~~L~~~ea~~l~~~~~ 215 (381)
... ++..+.+|..+++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 221 77889999999887554
No 124
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.21 E-value=5.8e-06 Score=72.70 Aligned_cols=89 Identities=24% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-------
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL------- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~------- 151 (381)
.+..++|.|++|+|||||++.+++.+.. +|+..+|+....+. .....++.+.+...+.-.....+....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 6788999999999999999999997755 57777787644432 346667776663332222111111111
Q ss_pred ---HHH-HhCCCeEEEEEeCCCCh
Q 040862 152 ---NFR-RLSRRKVLIVLDDVTCF 171 (381)
Q Consensus 152 ---l~~-~l~~~~~LlvlDdv~~~ 171 (381)
... .-.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 111 13479999999998543
No 125
>PRK10536 hypothetical protein; Provisional
Probab=98.21 E-value=5.4e-05 Score=66.09 Aligned_cols=134 Identities=15% Similarity=0.221 Sum_probs=77.8
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhh-h-cccccceEEEEecccccc----CCCChHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNR-I-SRNFEGSCFLENVREESQ----KPGGLASLQQKL 135 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l~~~l 135 (381)
..+.+|......+..++.+..++.+.|++|+|||+||..++.+ + ...|..++.....-.... .+.+..+-....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 6678899999999998887789999999999999999998874 3 344553433321111000 022222222222
Q ss_pred HHHHhcc-CC--CCCCHHH------------HHHHhCCC---eEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEec
Q 040862 136 LSEVLKD-VN--VIPHIDL------------NFRRLSRR---KVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 136 ~~~~~~~-~~--~~~~~~~------------l~~~l~~~---~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr 195 (381)
+..+... .. ....+.. -...+++. .-+||+|++.+.. +...++.. .+.++++|++.-
T Consensus 135 ~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD 211 (262)
T PRK10536 135 FRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGD 211 (262)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCC
Confidence 2221111 00 0001111 12344554 3599999997544 45555544 368999999887
Q ss_pred ccc
Q 040862 196 NKQ 198 (381)
Q Consensus 196 ~~~ 198 (381)
...
T Consensus 212 ~~Q 214 (262)
T PRK10536 212 ITQ 214 (262)
T ss_pred hhh
Confidence 655
No 126
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.21 E-value=0.0001 Score=65.67 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=103.0
Q ss_pred Ccccchhh---HHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhcccccc-----eEEEEeccccccCCCCh
Q 040862 62 NELVGVES---RVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEG-----SCFLENVREESQKPGGL 128 (381)
Q Consensus 62 ~~~vGR~~---~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~~~~~~ 128 (381)
+.+||-.. .++.|.+++. ..+.+.|+|.+|+|||+++++++......++. -+++..... ..+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~----~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP----EPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC----CCCh
Confidence 45555443 4455566665 45789999999999999999999865433321 233333322 5667
Q ss_pred HHHHHHHHHHHhccCCCCCCHHH----HHHHhCC-CeEEEEEeCCCCh-----hhHHHHHhccCCCC---CCCeEEEEec
Q 040862 129 ASLQQKLLSEVLKDVNVIPHIDL----NFRRLSR-RKVLIVLDDVTCF-----NQIESLVGSLDRLL---PESRILITTR 195 (381)
Q Consensus 129 ~~l~~~l~~~~~~~~~~~~~~~~----l~~~l~~-~~~LlvlDdv~~~-----~~~~~l~~~~~~~~---~~~~iliTsr 195 (381)
..+...++..++........... ....++. +.=+||||++++. ..-..+++.+...+ .-+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 88888999888877444444333 2334443 4558999999542 22333333332222 2234455554
Q ss_pred ccc-----------------CCCCCH-HHHHHHHHHhh---ccCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 040862 196 NKQ-----------------MKGFGD-DHALELFNRHA---FRQNLVDVDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 196 ~~~-----------------l~~L~~-~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+.. +++... +|...|+.... .-.....-...+++..|+..++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 332 555544 34444443322 212222223467889999999998765543
No 127
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.20 E-value=2.6e-05 Score=80.03 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.+.|.+..++.+.+++. .++.+.|+|++|+|||+||+.+++....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 568899999999988763 3577999999999999999999987643
No 128
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.19 E-value=6.6e-05 Score=68.56 Aligned_cols=141 Identities=18% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CCChHHHHHHHHHHHhccCCCCCCHHHHHHH--h
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PGGLASLQQKLLSEVLKDVNVIPHIDLNFRR--L 156 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~--l 156 (381)
.++.++|+||+|+|||.+|+.++.++.-. .+..+..+.... .-.....+++++... ... -
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~----~i~vsa~eL~sk~vGEsEk~IR~~F~~A-------------~~~a~~ 209 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE----PIVMSAGELESENAGEPGKLIRQRYREA-------------ADIIKK 209 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC----eEEEEHHHhhcCcCCcHHHHHHHHHHHH-------------HHHhhc
Confidence 57889999999999999999999987543 223323222110 111122222222110 111 1
Q ss_pred CCCeEEEEEeCCCCh------------hh--HHHHHhccC--------------CCCCCCeEEEEecccc----------
Q 040862 157 SRRKVLIVLDDVTCF------------NQ--IESLVGSLD--------------RLLPESRILITTRNKQ---------- 198 (381)
Q Consensus 157 ~~~~~LlvlDdv~~~------------~~--~~~l~~~~~--------------~~~~~~~iliTsr~~~---------- 198 (381)
++++++|+||++|.. .. ...|+..+. ...++..||.||....
T Consensus 210 ~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpG 289 (413)
T PLN00020 210 KGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDG 289 (413)
T ss_pred cCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCC
Confidence 468999999998421 11 134443321 1234456777775544
Q ss_pred -----CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 199 -----MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 199 -----l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
+..-+.++=.++++......... ...+.+|++...|-|+
T Consensus 290 RfDk~i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 290 RMEKFYWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCceeCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 22235566666666555333222 2556677777777765
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.14 E-value=5.2e-05 Score=77.79 Aligned_cols=156 Identities=17% Similarity=0.268 Sum_probs=87.9
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|.+...+.|.+.+. .++-+.++|++|+|||+||+.++......| +......
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~------ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPE------ 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHH------
Confidence 567888888887777543 356789999999999999999998765432 2111111
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh--------------hhHHHHHhccCCC--CCCCe
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF--------------NQIESLVGSLDRL--LPESR 189 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~--------------~~~~~l~~~~~~~--~~~~~ 189 (381)
++....+ .....+.. +...-...+++|+||+++.. ..+..++..+... ..+.-
T Consensus 523 --------l~~~~vG--ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 523 --------ILSKWVG--ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred --------HhhcccC--cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111110 01111222 22333467899999998532 1234455444422 22334
Q ss_pred EEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 190 ILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 190 iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
||.||.... ++..+.++-.++|.....+..... ......+++.|.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCC
Confidence 555554432 556677777788876553322211 112566777887754
No 130
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.3e-05 Score=70.93 Aligned_cols=87 Identities=24% Similarity=0.286 Sum_probs=51.1
Q ss_pred hhhHHHHHHHh---hCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC
Q 040862 67 VESRVEEIESL---LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV 143 (381)
Q Consensus 67 R~~~l~~l~~~---l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 143 (381)
+...+..+... +.++.-+.++|++|+|||.||.++.+++. +....+.+... .++...+......
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~----------~el~~~Lk~~~~~-- 154 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA----------PDLLSKLKAAFDE-- 154 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEH----------HHHHHHHHHHHhc--
Confidence 44444444433 33788999999999999999999999988 43434444322 2333333332222
Q ss_pred CCCCCHHHHHHHhCCCeEEEEEeCCC
Q 040862 144 NVIPHIDLNFRRLSRRKVLIVLDDVT 169 (381)
Q Consensus 144 ~~~~~~~~l~~~l~~~~~LlvlDdv~ 169 (381)
......+.+.+.+-+ ||||||+.
T Consensus 155 --~~~~~~l~~~l~~~d-lLIiDDlG 177 (254)
T COG1484 155 --GRLEEKLLRELKKVD-LLIIDDIG 177 (254)
T ss_pred --CchHHHHHHHhhcCC-EEEEeccc
Confidence 111222344344333 89999993
No 131
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.11 E-value=8.5e-06 Score=75.11 Aligned_cols=89 Identities=22% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-------
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL------- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~------- 151 (381)
.++-.+|+|++|+|||||++++++.+.. +|+..+|+....+. .....++.+.+...+.......+...+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 6778899999999999999999997765 58888888765542 335566666665322222111111111
Q ss_pred ---HHH-HhCCCeEEEEEeCCCCh
Q 040862 152 ---NFR-RLSRRKVLIVLDDVTCF 171 (381)
Q Consensus 152 ---l~~-~l~~~~~LlvlDdv~~~ 171 (381)
... ...+++++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 111 13579999999999543
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.11 E-value=0.00013 Score=63.89 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=64.7
Q ss_pred HHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCC
Q 040862 70 RVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNV 145 (381)
Q Consensus 70 ~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 145 (381)
.+..+.++.. +...+.++|++|+|||+|+..+++.+......++++. ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~---~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN---S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh---c
Confidence 3444444443 2357899999999999999999998765533333332 22333333322211 1
Q ss_pred CCCHHHHHHHhCCCeEEEEEeCCCCh--hhHH--HHHhccC-CCCCCCeEEEEeccccCCCCCHHHHHHHH
Q 040862 146 IPHIDLNFRRLSRRKVLIVLDDVTCF--NQIE--SLVGSLD-RLLPESRILITTRNKQMKGFGDDHALELF 211 (381)
Q Consensus 146 ~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~--~l~~~~~-~~~~~~~iliTsr~~~l~~L~~~ea~~l~ 211 (381)
......+.+.+.+ .-+|||||+... ..+. .+...+. .......+||||. ++.++..+.+
T Consensus 150 ~~~~~~~l~~l~~-~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN------l~~~~l~~~~ 213 (244)
T PRK07952 150 ETSEEQLLNDLSN-VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN------SNMEEMTKLL 213 (244)
T ss_pred cccHHHHHHHhcc-CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC------CCHHHHHHHh
Confidence 1223345555553 448888999432 2222 1222221 1123456788776 4555544433
No 133
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.10 E-value=6e-05 Score=72.78 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.9
Q ss_pred CcccchhhHHHHHHHhh------------CCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLL------------GAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++.|.+...+.+.... ..++-+.++|++|+|||.+|+.++....-
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56778776666665421 14678999999999999999999987643
No 134
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.8e-06 Score=71.95 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
-.|++.++||||.|||+|++.+++++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 36899999999999999999999965
No 135
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.3e-05 Score=73.93 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=40.9
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..+-|.+..+.+|.+++. .++-|.+|||||+|||.||+.++.++.-.
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 678899999999988764 67899999999999999999999887543
No 136
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=1.5e-05 Score=63.47 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=25.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
.+.+.|+|++|+||||++..++..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 56889999999999999999999876654
No 137
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=1.7e-05 Score=73.42 Aligned_cols=90 Identities=23% Similarity=0.223 Sum_probs=60.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-------
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL------- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~------- 151 (381)
.+..++|+|++|+|||||+..+++.+..+ |+..+|+...++. .....++.+.+...+.......+....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 78899999999999999999999987665 8878877655432 356777777775444333111111111
Q ss_pred ---HHH-HhCCCeEEEEEeCCCChh
Q 040862 152 ---NFR-RLSRRKVLIVLDDVTCFN 172 (381)
Q Consensus 152 ---l~~-~l~~~~~LlvlDdv~~~~ 172 (381)
... ...+++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 111 134799999999996543
No 138
>PRK06526 transposase; Provisional
Probab=98.06 E-value=3.9e-05 Score=67.86 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
....+.|+|++|+|||+||..++......
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 67789999999999999999998876544
No 139
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.05 E-value=0.00019 Score=64.05 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 70 RVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 70 ~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++..++...+.+.|.|++|+|||+||+.++....
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3445555555677888999999999999999998553
No 140
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=0.00024 Score=64.77 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCC
Q 040862 159 RKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVD 222 (381)
Q Consensus 159 ~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~ 222 (381)
+.=++|||+++.. .....++..+-+..+++.+|++|.+.. +.+++.+++.+.+.... .+
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~ 187 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS 187 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC
Confidence 4568999999754 456677777776667887777776554 77889999998887532 11
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHH
Q 040862 223 VDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 223 ~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+..+..++..++|.|+....+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 233667899999999865443
No 141
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00032 Score=64.09 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=89.5
Q ss_pred HHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc------
Q 040862 72 EEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD------ 142 (381)
Q Consensus 72 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------ 142 (381)
+.|.+.+. -+....++|+.|+||+++|..++..+--.-... .. ..+.-..++.+......+
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~------~~----~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG------DQ----PCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC------CC----CCCCCHHHHHHhcCCCCCEEEEcc
Confidence 34555554 246778999999999999999998643211000 00 011111111111111110
Q ss_pred -CCCCCCHHH---HHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-------------
Q 040862 143 -VNVIPHIDL---NFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ------------- 198 (381)
Q Consensus 143 -~~~~~~~~~---l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~------------- 198 (381)
....-.+++ +.+.+. ++.=++|+|+++.. .....++..+-+..+++.+|++|.+..
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 000111222 323322 34558889999754 457778877777677777777776654
Q ss_pred -CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHH
Q 040862 199 -MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLA 242 (381)
Q Consensus 199 -l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 242 (381)
+.+++.++..+.+...... . ...+..+...++|.|+.
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLL 199 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHH
Confidence 8899999999988876411 1 12366778899999963
No 142
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=2.4e-05 Score=69.63 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=28.7
Q ss_pred HHHHHHHh--hCCCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 70 RVEEIESL--LGAAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 70 ~l~~l~~~--l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+..|... +.....+.|+|++|+|||+||..++......
T Consensus 89 ~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 89 QLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred HHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 34444332 3367789999999999999999998765443
No 143
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=5.8e-05 Score=73.78 Aligned_cols=49 Identities=31% Similarity=0.532 Sum_probs=44.5
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
.+.+|-+...+++.++|. ++++++++||||+|||+|++.+++.+..+|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 788999999999999987 6789999999999999999999998877653
No 144
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.96 E-value=2.6e-05 Score=73.44 Aligned_cols=46 Identities=28% Similarity=0.306 Sum_probs=40.7
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++++.+..++.+...+...+.+.++|++|+|||++|+.+++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5678888899999999988889999999999999999999987654
No 145
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00038 Score=66.98 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=106.8
Q ss_pred CcccchhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
++++|.+.....|.+.+.. ...-..+|+.|+||||+|+-++..+--.-. .... +.+-...++.+...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~~~e-----PC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-----PTAE-----PCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-----CCCC-----cchhhhhhHhhhcC
Confidence 5789999999999999983 445678999999999999999985422110 0000 11111111122111
Q ss_pred Hh-----cc---CCCCCCHHHHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VL-----KD---VNVIPHIDLNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~-----~~---~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
-. -+ ....+.+..+.+... ++.=+.|||+++.. ..+..++..+-+..++...|+.|.+..
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00 00 111222233444333 34458999999754 578999998887777887777777765
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
++.++.++-...+...+....... .++....|.+..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCChh
Confidence 888999999988888775544333 24667777777777554
No 146
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.0002 Score=66.13 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=81.6
Q ss_pred cccc-hhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccc--cceEEEEeccccccCCCChHHHHHHHH
Q 040862 63 ELVG-VESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNF--EGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 63 ~~vG-R~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.++| -+..++.|...+. -++...++|+.|+|||++|..+++.+-..- ... ..+....++.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~------------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE------------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC------------CCCcCHHHHHHh
Confidence 4566 6777788888876 356779999999999999999988653210 000 000000011110
Q ss_pred HHHhcc------C---CCCCCHHHHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--
Q 040862 137 SEVLKD------V---NVIPHIDLNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ-- 198 (381)
Q Consensus 137 ~~~~~~------~---~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~-- 198 (381)
.....+ . .....+..+.+.+ .+.+=++|+|+++.. +....++..+.+..+++.+|++|.+..
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 000000 0 0001111122222 234458999999754 346677777776667777777776544
Q ss_pred ------------CCCCCHHHHHHHHHHh
Q 040862 199 ------------MKGFGDDHALELFNRH 214 (381)
Q Consensus 199 ------------l~~L~~~ea~~l~~~~ 214 (381)
+.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 8899999998888653
No 147
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.96 E-value=4.8e-05 Score=69.76 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
....+.++|++|+|||+||..+++.+..+...++++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4688999999999999999999998766544444443
No 148
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.95 E-value=8.6e-05 Score=67.55 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=70.6
Q ss_pred chhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHH
Q 040862 66 GVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEV 139 (381)
Q Consensus 66 GR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 139 (381)
+|...+....+++. ..+.+.|+|++|+|||.||..+++.+...-..+.++. . ..+...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~----------~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-F----------PEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-H----------HHHHHHHHHHH
Confidence 45544444444444 3568999999999999999999998865433334432 1 23334443332
Q ss_pred hccCCCCCCHHHHHHHhCCCeEEEEEeCCCC--hhhHH--HHHhcc-C-CCCCCCeEEEEeccccCCCCCHHHHHHHH
Q 040862 140 LKDVNVIPHIDLNFRRLSRRKVLIVLDDVTC--FNQIE--SLVGSL-D-RLLPESRILITTRNKQMKGFGDDHALELF 211 (381)
Q Consensus 140 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~~~--~l~~~~-~-~~~~~~~iliTsr~~~l~~L~~~ea~~l~ 211 (381)
.. .......+.+.+ .=||||||+.. ...|. .++..+ . ....+-.+|+||. ++.++..+.|
T Consensus 204 ~~-----~~~~~~l~~l~~-~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN------l~~~el~~~~ 269 (306)
T PRK08939 204 SD-----GSVKEKIDAVKE-APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN------FDFDELEHHL 269 (306)
T ss_pred hc-----CcHHHHHHHhcC-CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC------CCHHHHHHHH
Confidence 21 123444455543 44899999942 22232 233332 1 1124557888887 5666666655
No 149
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00011 Score=71.07 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=90.7
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
+++-|-++...+|.+... .++-|.++||||+|||++|+.+++...-.|-.+ ..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------kg------ 501 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------KG------ 501 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------cC------
Confidence 666678877777776543 678999999999999999999999766554311 00
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccCCCCCCCeEE-
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLDRLLPESRIL- 191 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~~~~~il- 191 (381)
. +++....++ ....+.. +.++-+-.+++|+||.+|.. ..+..++..+........|+
T Consensus 502 --p----EL~sk~vGe--SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 502 --P----ELFSKYVGE--SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred --H----HHHHHhcCc--hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 0 111111111 1111222 22233347799999998532 23566676666444333333
Q ss_pred E--Eecccc----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 192 I--TTRNKQ----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 192 i--Tsr~~~----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
| |.|.+. +++-+.+.-.++|+.++..-...+. -..++|++.++|.--
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYSG 638 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCCh
Confidence 3 223322 5555667777888877744332221 235667777777653
No 150
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00043 Score=63.86 Aligned_cols=155 Identities=13% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc------
Q 040862 72 EEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD------ 142 (381)
Q Consensus 72 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------ 142 (381)
++|.+.+. -+....++|+.|+||+++|..++..+--.-+.. .. ..+.-.-++.+......+
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~------~~----~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 12 EQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG------HK----SCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC------CC----CCCCCHHHHHHHcCCCCCEEEEec
Confidence 44445544 356788999999999999999988652210000 00 000001111111111100
Q ss_pred -C----CCCCCHHHHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc------------
Q 040862 143 -V----NVIPHIDLNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ------------ 198 (381)
Q Consensus 143 -~----~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~------------ 198 (381)
. -....+.++.+.+. ++.=++|||+++.. +....++..+-+..+++.+|++|.+..
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 00111222333222 45568999999754 457778877777677777777776654
Q ss_pred --CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 199 --MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 --l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+++++.+++.+.+.... . .+ ++.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~-~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREV---T-MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHcc---C-CC---HHHHHHHHHHcCCCHHHH
Confidence 88899999998886542 1 11 244677899999999633
No 151
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.91 E-value=0.0001 Score=65.75 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=96.0
Q ss_pred CCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHH
Q 040862 60 LQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
+...|+|-..+.+.+..++. +..-|.|.||.|.|||.|......+ .+.+......+.+.+.... -.-.++
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~---dk~al~ 97 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQT---DKIALK 97 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchh---hHHHHH
Confidence 33689999999999999887 7788999999999999999988877 4556666666666554332 112233
Q ss_pred HHHHHHhcc--------CCCCCCHHHHHHHhC------CCeEEEEEeCCCChh------hHHHHHhccCCC-CCCCeEEE
Q 040862 134 KLLSEVLKD--------VNVIPHIDLNFRRLS------RRKVLIVLDDVTCFN------QIESLVGSLDRL-LPESRILI 192 (381)
Q Consensus 134 ~l~~~~~~~--------~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~~------~~~~l~~~~~~~-~~~~~ili 192 (381)
.+.+++..+ .+..+.+..+...|. +.++++|+|++|-.. .+-.++...... .|-|-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 333333222 334445555666664 356899999986321 233344333222 24455678
Q ss_pred Eecccc-------------------CCCCCHHHHHHHHHHhh
Q 040862 193 TTRNKQ-------------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 193 Tsr~~~-------------------l~~L~~~ea~~l~~~~~ 215 (381)
|||-+. +++++.++-.+++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 998654 55556666666665554
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.3e-05 Score=78.30 Aligned_cols=139 Identities=12% Similarity=0.159 Sum_probs=81.4
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc-c-----cceEEEEeccccccCCCChHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-F-----EGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
+..+||+.|+.++.+.|. ....-+++|+||+|||+++.-++.++-.. - +..++..++... .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L----------v- 238 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL----------V- 238 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH----------h-
Confidence 789999999999999998 44555689999999999999999875432 1 112222211110 0
Q ss_pred HHHHHHhccCCCCCCHHHHHHHhC-CCeEEEEEeCCCCh----------hhHHHHHhccCCCCCCCeEEEEecccc----
Q 040862 134 KLLSEVLKDVNVIPHIDLNFRRLS-RRKVLIVLDDVTCF----------NQIESLVGSLDRLLPESRILITTRNKQ---- 198 (381)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~~~~iliTsr~~~---- 198 (381)
....-......++..+.+.+. ..+++|++|.++.. -+...++......+.--+|-.||-++.
T Consensus 239 ---AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 239 ---AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred ---ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 000000222233333444444 35899999998321 112233322222233335556665543
Q ss_pred --------------CCCCCHHHHHHHHHHh
Q 040862 199 --------------MKGFGDDHALELFNRH 214 (381)
Q Consensus 199 --------------l~~L~~~ea~~l~~~~ 214 (381)
+...+.+++..+++..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 7778888888887643
No 153
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.89 E-value=8.5e-05 Score=73.68 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++|.+..++++..++. ..++++|+|++|+||||+++.++..+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999886 346799999999999999999998654
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.88 E-value=0.00019 Score=73.61 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+..++.+.+.+. ....+.++||+|+|||.||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 678999999998888765 123578999999999999999998773
No 155
>PRK06921 hypothetical protein; Provisional
Probab=97.87 E-value=2.3e-05 Score=69.85 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 116 (381)
....+.++|++|+|||+|+..+++.+.++ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 36789999999999999999999987665 33344443
No 156
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.87 E-value=8.9e-05 Score=72.46 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHh--C
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRL--S 157 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l--~ 157 (381)
..+++.++|++|.||||||.-++++. .+.+.-.+.++ ......+-..+...+... ..+ .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GYsVvEINASD----eRt~~~v~~kI~~avq~~-----------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GYSVVEINASD----ERTAPMVKEKIENAVQNH-----------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----CceEEEecccc----cccHHHHHHHHHHHHhhc-----------cccccC
Confidence 67899999999999999999998753 22333333332 344444444443333222 112 2
Q ss_pred CCeEEEEEeCCCCh
Q 040862 158 RRKVLIVLDDVTCF 171 (381)
Q Consensus 158 ~~~~LlvlDdv~~~ 171 (381)
++|..||+|++|..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 58999999999754
No 157
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.0019 Score=58.92 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc------
Q 040862 72 EEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD------ 142 (381)
Q Consensus 72 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------ 142 (381)
+.|.+.+. -+....++|+.|+||+++|..++..+--.-... . ..+.-..++.+......+
T Consensus 13 ~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-------~----~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-------E----ACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------C----CCCCCHHHHHHHcCCCCCEEEEec
Confidence 44455444 355888999999999999999988542110000 0 000001111111111100
Q ss_pred C--CCCCCHHH---HHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc------------
Q 040862 143 V--NVIPHIDL---NFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ------------ 198 (381)
Q Consensus 143 ~--~~~~~~~~---l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~------------ 198 (381)
. ...-.+++ +.+.+ .+..=++|||+++.. +....++..+-+..+++.+|++|.+..
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0 00011222 22222 134458899999754 456777777777677777777666554
Q ss_pred --CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 --MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 --l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.+++.+.+..... + ....++..++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 889999999998875421 1 1346788999999866444
No 158
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.84 E-value=0.0017 Score=55.44 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=70.7
Q ss_pred CcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKL 135 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 135 (381)
..++|-+...+.|.+.-. ....|.++|-.|+|||+|++++...+.......+-+. ..++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~--------k~dl~------ 125 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD--------KEDLA------ 125 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--------HHHHh------
Confidence 778999988888776543 5678999999999999999999998877655433221 11111
Q ss_pred HHHHhccCCCCCCHHHHHHHhC--CCeEEEEEeCCC---ChhhHHHHHhccC---CCCCCCeEEEEecccc
Q 040862 136 LSEVLKDVNVIPHIDLNFRRLS--RRKVLIVLDDVT---CFNQIESLVGSLD---RLLPESRILITTRNKQ 198 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~---~~~~~~~l~~~~~---~~~~~~~iliTsr~~~ 198 (381)
.+..+.+.++ .++++|+.||+. ....+..+...+. ...|..-++..|.++.
T Consensus 126 ------------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 ------------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ------------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 1222333333 589999999982 3334555544443 2224445566666554
No 159
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.83 E-value=0.00092 Score=65.38 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhc-----ccccceEEE-EeccccccCCCC
Q 040862 61 QNELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRIS-----RNFEGSCFL-ENVREESQKPGG 127 (381)
Q Consensus 61 ~~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~-----~~f~~~~~~-~~~~~~~~~~~~ 127 (381)
+..+-+|+.|..+|..++. ....+-|+|.||+|||..+..+.+.++ ..-+...++ .+... ...
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~----l~~ 470 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR----LAS 470 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee----ecC
Confidence 3688999999999999886 345899999999999999999998553 111211121 22222 344
Q ss_pred hHHHHHHHHHHHhcc-CCCCCCHHHHHHHhC-----CCeEEEEEeCCCC-----hhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 128 LASLQQKLLSEVLKD-VNVIPHIDLNFRRLS-----RRKVLIVLDDVTC-----FNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~-~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
..++...+...+.+. ......+..+..+.. .+++++++|+++. .+.+-.++.-.. .++++++|.+=.
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEEEec
Confidence 667777777776665 333444444444443 4679999999853 333444433222 367766544322
Q ss_pred c-c---------------------CCCCCHHHHHHHHHHhhccC
Q 040862 197 K-Q---------------------MKGFGDDHALELFNRHAFRQ 218 (381)
Q Consensus 197 ~-~---------------------l~~L~~~ea~~l~~~~~~~~ 218 (381)
. . ..|.+.++..+++..++.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 2 1 77888888888888776444
No 160
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0008 Score=65.85 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=93.4
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
.++-|..+..+.|++.+. ...-|.++|+||+|||-||.+++....-+ +..+.+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~------fisvKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR------FISVKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee------EEEecC------
Confidence 567777777777777664 34578999999999999999998754221 222222
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHH-HHHhCCCeEEEEEeCCCC-------------hhhHHHHHhccCCC--CCCCeE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLN-FRRLSRRKVLIVLDDVTC-------------FNQIESLVGSLDRL--LPESRI 190 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~-------------~~~~~~l~~~~~~~--~~~~~i 190 (381)
. +++....+. ..+.+..+ .++-.-+||+|+||++++ .+....++..+... -.|..|
T Consensus 735 -P-----ElL~KyIGa--SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 735 -P-----ELLSKYIGA--SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred -H-----HHHHHHhcc--cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 2 222232222 23344443 344456999999999954 23466777776532 244455
Q ss_pred E-EEecccc----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHH
Q 040862 191 L-ITTRNKQ----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLA 242 (381)
Q Consensus 191 l-iTsr~~~----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 242 (381)
+ .|||.+. -+.-++.+-.+++....-...... .-..+.+..+++|..-|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 4 3666654 222355666666665542211111 23367788888887754
No 161
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00038 Score=67.99 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
..+.+.|.|+.|+|||+|+++++..+.....+.+-+.++.... ...+..+++.+... +...+...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~--~~~~e~iQk~l~~v-------------fse~~~~~ 494 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLD--GSSLEKIQKFLNNV-------------FSEALWYA 494 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhcc--chhHHHHHHHHHHH-------------HHHHHhhC
Confidence 5788999999999999999999998876544444444443322 22233333332211 33456678
Q ss_pred eEEEEEeCCC
Q 040862 160 KVLIVLDDVT 169 (381)
Q Consensus 160 ~~LlvlDdv~ 169 (381)
|.++||||++
T Consensus 495 PSiIvLDdld 504 (952)
T KOG0735|consen 495 PSIIVLDDLD 504 (952)
T ss_pred CcEEEEcchh
Confidence 9999999994
No 162
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00025 Score=73.48 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHHhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..++.+.+.+. ...++.++||+|+|||.||+.+++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 788999999999888763 1236899999999999999999987643
No 163
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0002 Score=69.93 Aligned_cols=49 Identities=31% Similarity=0.481 Sum_probs=44.1
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
..-+|.+...+++.+++. ++++++.+||||+|||++++.++..+..+|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 778999999999999876 7899999999999999999999998876643
No 164
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.80 E-value=0.00056 Score=67.33 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=38.0
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++++|.+..++.+...+. ....+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999998766 45778999999999999999997643
No 165
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0015 Score=64.59 Aligned_cols=91 Identities=24% Similarity=0.311 Sum_probs=59.4
Q ss_pred CCCcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCC
Q 040862 60 LQNELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKP 125 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 125 (381)
..+++-|.++...+|.+.+. +..-|.++||||.|||-||++++.+..-. |+. +.
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-VK------ 737 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-VK------ 737 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-ec------
Confidence 33778888888888887654 35678999999999999999999875432 222 21
Q ss_pred CChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCC
Q 040862 126 GGLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTC 170 (381)
Q Consensus 126 ~~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~ 170 (381)
+. +++....+ ....++.+ +.++-...||+|+||++|+
T Consensus 738 -GP-----ELLNMYVG--qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 738 -GP-----ELLNMYVG--QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -CH-----HHHHHHhc--chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22 12222222 12334444 4444456999999999964
No 166
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.79 E-value=0.00026 Score=72.94 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.+...+.+.+++. ..+.++++|++|+|||++|+.+++.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~ 374 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK 374 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 568899999988888654 45689999999999999999999987544
No 167
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.78 E-value=0.00017 Score=66.40 Aligned_cols=96 Identities=20% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccce-EEEEeccccccCCCChHHHHHHHHHHHhccCCCCC
Q 040862 72 EEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGS-CFLENVREESQKPGGLASLQQKLLSEVLKDVNVIP 147 (381)
Q Consensus 72 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 147 (381)
.++.+.+. .+.-+.|+|++|+|||||++.+++.+..+.+.+ +++..+.+. .....++...+...+........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCC
Confidence 33555554 567789999999999999999999876654333 344333332 55667777777665444321111
Q ss_pred CHHH---------HHHHh--CCCeEEEEEeCCCC
Q 040862 148 HIDL---------NFRRL--SRRKVLIVLDDVTC 170 (381)
Q Consensus 148 ~~~~---------l~~~l--~~~~~LlvlDdv~~ 170 (381)
.... ....+ .+++++||+|++..
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 11122 47999999999844
No 168
>PHA00729 NTP-binding motif containing protein
Probab=97.77 E-value=5.1e-05 Score=65.11 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+...++|+|++|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998764
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=97.77 E-value=0.0009 Score=68.43 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=89.1
Q ss_pred Eec--CCCCchhHHHHHHHhhhc-ccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEE
Q 040862 86 IWG--IGGIGKTTIARVIFNRIS-RNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVL 162 (381)
Q Consensus 86 I~G--~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 162 (381)
+.| |.++||||+|..+++++- +.+...+.-.+..+ ..+.. ..+.+........+. ...+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd----~rgid-~IR~iIk~~a~~~~~----------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD----ERGIN-VIREKVKEFARTKPI----------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC----cccHH-HHHHHHHHHHhcCCc----------CCCCCEE
Confidence 457 899999999999999863 23333444444432 12222 222222222111000 0123469
Q ss_pred EEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHH
Q 040862 163 IVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYK 226 (381)
Q Consensus 163 lvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~ 226 (381)
+|||+++... ....|+..+......+++|+++.+.. +++++.++..+.+...+...+..- .+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i--~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--CH
Confidence 9999998654 56667776666567778877776654 889999999988877664333221 24
Q ss_pred HHHHHHHHHhCCChHHHHH
Q 040862 227 ELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 227 ~~~~~i~~~~~G~PLal~~ 245 (381)
+.+..|++.++|.+.....
T Consensus 712 e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6788999999999855433
No 170
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=0.00034 Score=60.36 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=36.8
Q ss_pred CcccchhhHHHH---HHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEE---IESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~---l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
++.||.+..... |.+.|. .++.|..+||+|.|||-+|+.+++....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence 778898876554 444554 6899999999999999999999987543
No 171
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.74 E-value=8.2e-05 Score=64.58 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
..+-.++|.|++|+|||+|+..+...+...|..++++.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 34446789999999999999999999988997666554
No 172
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0013 Score=60.57 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=53.8
Q ss_pred CeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCC
Q 040862 159 RKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVD 222 (381)
Q Consensus 159 ~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~ 222 (381)
+.=++|||+++.. +....++..+-+..+++.+|++|.+.. +++++.++..+.+.... .+
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----VA 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----CC
Confidence 4458889999754 457778887777777777766666544 88999999999987652 11
Q ss_pred hhHHHHHHHHHHHhCCChHHHHH
Q 040862 223 VDYKELSDKVINYAQGVPLALKI 245 (381)
Q Consensus 223 ~~~~~~~~~i~~~~~G~PLal~~ 245 (381)
+ ...+...++|.|+....
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHH
Confidence 1 22357788999975433
No 173
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00048 Score=68.65 Aligned_cols=160 Identities=15% Similarity=0.185 Sum_probs=97.3
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
.++.|-++..++|++... -++-|.|+||||+|||-||++++.+..-. |+....
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-----F~svSG-------- 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSVSG-------- 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-----eeeech--------
Confidence 678899887777777643 36789999999999999999999764322 222110
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCC-----------------hhhHHHHHhccCCCCCCC-
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTC-----------------FNQIESLVGSLDRLLPES- 188 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~-----------------~~~~~~l~~~~~~~~~~~- 188 (381)
. ++...+... ....+.. +..+-.+.|+++.+|+++. ...+.+++.....+....
T Consensus 378 -S----EFvE~~~g~--~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 378 -S----EFVEMFVGV--GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -H----HHHHHhccc--chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 0 111111111 1122222 2333346899999999842 123666666666544444
Q ss_pred eEEEEecccc------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 189 RILITTRNKQ------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 189 ~iliTsr~~~------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
-|++.+.++. ++.-+..+-.++|..++...... .+..++.. +...+-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 3333333332 66677888889998888555443 23345555 888898888665
No 174
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.71 E-value=0.00016 Score=61.71 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=58.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHH-HHHHHhCCCe
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHID-LNFRRLSRRK 160 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~ 160 (381)
.++.|+|++|+||||++..++..+.......++...-. ........ ..+..+.. -........ .+...+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~-~E~~~~~~----~~~i~q~~-vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP-IEFVHESK----RSLINQRE-VGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC-ccccccCc----cceeeecc-cCCCccCHHHHHHHHhcCCc
Confidence 57899999999999999998887654433343332111 00000000 00100000 011112232 2666777778
Q ss_pred EEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 161 VLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 161 ~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
=++++|++.+.+.+...+.... .|..++.|+..
T Consensus 76 d~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha 108 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAAE---TGHLVMSTLHT 108 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecC
Confidence 8999999988776666554422 34456666553
No 175
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00033 Score=61.34 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++-|-++++++|.+... .++-|.++|+||.|||-||++++++-.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS 244 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS 244 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc
Confidence 667789999999999865 578899999999999999999998643
No 176
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.70 E-value=7e-05 Score=59.95 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=31.6
Q ss_pred cchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 65 VGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 65 vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
||+...++++.+.+. ....|.|+|++|+||+++|+.+...-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 567777777777665 677889999999999999998877533
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.69 E-value=0.00048 Score=70.59 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=40.6
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...+|.+...+++.+++. ....++++|++|+||||+++.++..+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 679999999999988776 45689999999999999999999876544
No 178
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.001 Score=57.46 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+-|-+.++++|.+..- .++-|.++||||.|||-+|+..+.+-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 567888999999888643 57889999999999999999988754
No 179
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0013 Score=57.87 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcccCCccCCCcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 41 MQRWRSALTEAANLSGFDSLQNELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 41 v~~~~~~l~~~~~~~~~~~~~~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
-.+++.+|..+.-.....+..+...|.+...+.|.+..- .-+-+.++||||.|||.||++++.+..
T Consensus 112 ~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 112 KKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred HHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 446667776665555555566888999999999988643 346889999999999999999997643
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.67 E-value=0.00011 Score=62.28 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=60.2
Q ss_pred hhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh--cccccceEEEEeccccccC----CCChHH----HHHHHH
Q 040862 67 VESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI--SRNFEGSCFLENVREESQK----PGGLAS----LQQKLL 136 (381)
Q Consensus 67 R~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~----~~~~~~----l~~~l~ 136 (381)
+..+.....+.+....++.+.|++|+|||.||.+.+-+. ..+|+..++....-..... +.+..+ ....+.
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~ 84 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIY 84 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHH
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHH
Confidence 444445555555568899999999999999999988643 3456666665433211000 111111 111111
Q ss_pred HHHhccCCCCCCHHHHH----------HHhCC---CeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 137 SEVLKDVNVIPHIDLNF----------RRLSR---RKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~----------~~l~~---~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
..+..-. ....++.+. ..+++ .+.++|+|++.+ ..++..++..+ +.+|+++++--...
T Consensus 85 d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~Q 157 (205)
T PF02562_consen 85 DALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE----
T ss_pred HHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCcee
Confidence 1111110 112222222 12333 357999999954 45677776654 68999999887554
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=2.6e-05 Score=62.49 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.9
Q ss_pred EEEecCCCCchhHHHHHHHhhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.65 E-value=7.3e-05 Score=61.34 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=25.2
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
++.|+|++|+|||+++..++......-..++|+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 368999999999999999998775543334443
No 183
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0006 Score=64.58 Aligned_cols=111 Identities=18% Similarity=0.270 Sum_probs=62.9
Q ss_pred CcccchhhHHHHHH---HhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIE---SLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~---~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
.+.-|-++..++|+ ++|. =++-|.++||||.|||-||++++-+..- -+|+....+... .
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~sGSEFdE---m 376 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYASGSEFDE---M 376 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEeccccchhh---h
Confidence 55677776555554 4554 2578999999999999999999875432 233322221111 0
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCC-------------hhhHHHHHhccCCCCCCCeEEE
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTC-------------FNQIESLVGSLDRLLPESRILI 192 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~-------------~~~~~~l~~~~~~~~~~~~ili 192 (381)
+-.. ...++.. +..+-..-||+|+||++|. -+.+.+++-.+..+..+.-|||
T Consensus 377 ~VGv-------------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 377 FVGV-------------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred hhcc-------------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 0000 0111222 2233346899999999853 1235666666665555544443
No 184
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0011 Score=56.93 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=66.4
Q ss_pred cchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChH
Q 040862 65 VGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLA 129 (381)
Q Consensus 65 vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 129 (381)
-|-+.+++++.+... +++-|.++|++|.|||-||+.+++.- .+|+..+++ .
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsg--------s 215 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG--------S 215 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech--------H
Confidence 345677777776543 68899999999999999999998642 355554433 1
Q ss_pred HHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCCCeE
Q 040862 130 SLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPESRI 190 (381)
Q Consensus 130 ~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~~~i 190 (381)
++.+.. .++. ..-..+ +.-+-.+-|.+|+.|++++. ...-++++.+..+ ..+.+|
T Consensus 216 elvqk~----igeg--srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 216 ELVQKY----IGEG--SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHHHHH----hhhh--HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 222221 1110 001111 23333568889999998531 1234455655532 356677
Q ss_pred EEEeccc
Q 040862 191 LITTRNK 197 (381)
Q Consensus 191 liTsr~~ 197 (381)
|+.|..-
T Consensus 290 imatnri 296 (404)
T KOG0728|consen 290 IMATNRI 296 (404)
T ss_pred EEecccc
Confidence 7766543
No 185
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.00087 Score=63.76 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++.|+||+|+||||.++.++..+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 67899999999999999999998864
No 186
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0042 Score=58.02 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.|--.++||||.|||+++.++++.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999865
No 187
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00086 Score=61.89 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=70.7
Q ss_pred cccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccc---------------------cceEEEEe
Q 040862 63 ELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNF---------------------EGSCFLEN 117 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 117 (381)
.++|-+.....+..+.. .+..+.++||+|+||||+|..+++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 45666666777766655 234599999999999999999999765322 1122221
Q ss_pred ccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEec
Q 040862 118 VREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 118 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr 195 (381)
...... .....+..+.+......... .++.-++++|+++... ....++..+......+.+|++|.
T Consensus 81 ~s~~~~-~~i~~~~vr~~~~~~~~~~~------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 81 PSDLRK-IDIIVEQVRELAEFLSESPL------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ccccCC-CcchHHHHHHHHHHhccCCC------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111100 00122222222222211100 2456799999997654 46666666666677788888887
Q ss_pred ccc
Q 040862 196 NKQ 198 (381)
Q Consensus 196 ~~~ 198 (381)
...
T Consensus 148 ~~~ 150 (325)
T COG0470 148 DPS 150 (325)
T ss_pred Chh
Confidence 443
No 188
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.59 E-value=0.0016 Score=60.04 Aligned_cols=42 Identities=24% Similarity=0.221 Sum_probs=34.0
Q ss_pred ccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 64 LVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++|+...++++.+.+. ....|.|+|++|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777665 56778999999999999999887643
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.59 E-value=0.00043 Score=56.94 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=66.6
Q ss_pred chhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhccc--------------------ccceEEEEeccccc
Q 040862 66 GVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN--------------------FEGSCFLENVREES 122 (381)
Q Consensus 66 GR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~ 122 (381)
|-+...+.|.+.+. -+..+.++|+.|+||+++|..+++.+-.. ++...++. .....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK-PDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE-TTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe-ccccc
Confidence 55667777887776 35678999999999999999999864321 22222221 11000
Q ss_pred cCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 123 QKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
. .-...+ .+.+...+... ...+..=++|||+++.. +....|+..+-+...++.+|++|.+..
T Consensus 80 ~-~i~i~~-ir~i~~~~~~~------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 80 K-SIKIDQ-IREIIEFLSLS------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp S-SBSHHH-HHHHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred c-hhhHHH-HHHHHHHHHHH------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 0 001111 11222111111 01134558999999754 456777777766677888888887654
No 190
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.58 E-value=0.0011 Score=66.97 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+.|.+...+++.+.+. -++-+.|+|++|+|||++|+.++.....
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 455676666666655442 1456999999999999999999887654
No 191
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00075 Score=62.02 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=45.2
Q ss_pred eEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCCCHHHHHHHHHHhhccCCCCCh
Q 040862 160 KVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDV 223 (381)
Q Consensus 160 ~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~ 223 (381)
+-++|+|+++.. .....++..+.....++.+|++|.+.. +.+++.+++.+.+.+.. ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~- 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE- 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc-
Confidence 335567888643 345555555544445666777777654 88999999998886542 111
Q ss_pred hHHHHHHHHHHHhCCChHHH
Q 040862 224 DYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 224 ~~~~~~~~i~~~~~G~PLal 243 (381)
. ...+..++|.|+..
T Consensus 189 ~-----~~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 P-----EERLAFHSGAPLFD 203 (325)
T ss_pred H-----HHHHHHhCCChhhh
Confidence 1 11235688999643
No 192
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.58 E-value=0.00031 Score=58.11 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.3
Q ss_pred ccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 64 LVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++|.+..++++.+.+. ....|.|+|++|+||+.+|+.+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4677778888777665 56788899999999999999998854
No 193
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00088 Score=59.33 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
+++-|--..+.++.+.+. .+..++|||++|.|||-+|+.++..+.-+|
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 455566666666666543 467899999999999999999999876653
No 194
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0021 Score=61.99 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSR 158 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~ 158 (381)
.+.-|.++||||+|||-||++++++.+-+|- .+.+ . +++....++ ....+.. ++++-.+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFi------sVKG-------P-----ELlNkYVGE--SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFI------SVKG-------P-----ELLNKYVGE--SERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceE------eecC-------H-----HHHHHHhhh--HHHHHHHHHHHhhcC
Confidence 4678899999999999999999998765542 1111 1 111111111 1122222 4555667
Q ss_pred CeEEEEEeCCCC-------------hhhHHHHHhccCCCC--CCCeEEEEecccc-----------------CCCCCHHH
Q 040862 159 RKVLIVLDDVTC-------------FNQIESLVGSLDRLL--PESRILITTRNKQ-----------------MKGFGDDH 206 (381)
Q Consensus 159 ~~~LlvlDdv~~-------------~~~~~~l~~~~~~~~--~~~~iliTsr~~~-----------------l~~L~~~e 206 (381)
.||+|+||.++. ...+..|+..+.... .+..||-.|..+. +..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 999999999953 234566676665432 3344554443332 55567788
Q ss_pred HHHHHHHhhc
Q 040862 207 ALELFNRHAF 216 (381)
Q Consensus 207 a~~l~~~~~~ 216 (381)
-.+++.....
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 8888877764
No 195
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.57 E-value=0.00017 Score=64.27 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=59.3
Q ss_pred hHHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCC
Q 040862 69 SRVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIP 147 (381)
Q Consensus 69 ~~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 147 (381)
..++.|..++. ...++.|.|+.|.||||++..+...+...-..++.+.+..+.. .... .+.........
T Consensus 67 ~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~--~~~~--------~q~~v~~~~~~ 136 (264)
T cd01129 67 ENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ--IPGI--------NQVQVNEKAGL 136 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec--CCCc--------eEEEeCCcCCc
Confidence 34555666665 5679999999999999999998877643212222222111111 0000 00000111111
Q ss_pred CH-HHHHHHhCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 148 HI-DLNFRRLSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 148 ~~-~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
.. ..+...++..+-.++++++.+.+....++..
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 22 3367778888899999999888876655544
No 196
>PRK04296 thymidine kinase; Provisional
Probab=97.57 E-value=0.00023 Score=60.27 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=59.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEe-ccccccCCCChHHHHHHHHHHHhccCC--CCCCHHHHHHHh-
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLEN-VREESQKPGGLASLQQKLLSEVLKDVN--VIPHIDLNFRRL- 156 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~l~~~l- 156 (381)
..++.|+|++|.||||++..++.+...+...++++.. ... ..... .+...++.... .......+...+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~----~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~ 73 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD----RYGEG----KVVSRIGLSREAIPVSSDTDIFELIE 73 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc----cccCC----cEecCCCCcccceEeCChHHHHHHHH
Confidence 3578899999999999999999887655333333311 011 11111 11122211100 112223333222
Q ss_pred --CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEeccccC
Q 040862 157 --SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQM 199 (381)
Q Consensus 157 --~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~l 199 (381)
.++.-+||+|.+.-. +++..+...+. ..+..|++|.++...
T Consensus 74 ~~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 74 EEGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred hhCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 235568999998543 33455544433 457789999988663
No 197
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.56 E-value=0.0021 Score=53.17 Aligned_cols=122 Identities=9% Similarity=0.141 Sum_probs=65.2
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCC---CCCHHHHHHHhCC-
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNV---IPHIDLNFRRLSR- 158 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~l~~~l~~- 158 (381)
++.|.|++|+|||++|.+++.... ...+++..... .+ .+....+.......... ......+.+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~---~~~~y~at~~~-----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG---GPVTYIATAEA-----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEccCc-----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 368999999999999999987622 23444432221 11 22333332221111111 1122234444421
Q ss_pred -CeEEEEEeCCC--------C------h---hhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHHHhh
Q 040862 159 -RKVLIVLDDVT--------C------F---NQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFNRHA 215 (381)
Q Consensus 159 -~~~LlvlDdv~--------~------~---~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~~~~ 215 (381)
++-.+++|.+. . . +.+..+...+. ..+..+|++|.+-.......+.....|...+
T Consensus 72 ~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnEvG~g~vp~~~~~r~f~d~l 144 (169)
T cd00544 72 DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNEVGLGVVPENALGRRFRDEL 144 (169)
T ss_pred CCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECCcCCCCCCCCHHHHHHHHHH
Confidence 34479999971 1 1 12333444444 3456677877665566666667777777665
No 198
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.55 E-value=0.00052 Score=71.52 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHhhCC-----------CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGA-----------APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~-----------~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..++.+...+.. ...+.++|++|+|||++|+.++..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6799999999999888751 246889999999999999999987644
No 199
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.55 E-value=0.00039 Score=64.66 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=62.0
Q ss_pred HHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-
Q 040862 74 IESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL- 151 (381)
Q Consensus 74 l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 151 (381)
+.+++. ....+.|+|++|.||||++..++..+.......++...-. ....... ...+..+. ...........
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp-~E~~~~~----~~~~i~q~-evg~~~~~~~~~ 187 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP-IEYVHRN----KRSLINQR-EVGLDTLSFANA 187 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC-hhhhccC----ccceEEcc-ccCCCCcCHHHH
Confidence 334443 5689999999999999999999887665444444433110 0000000 00000000 00111122332
Q ss_pred HHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEec
Q 040862 152 NFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 152 l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
+...++..+=+|++|++.+.+.....+... ..|..++.|..
T Consensus 188 l~~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 188 LRAALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred HHHhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEc
Confidence 667788899999999998877766544432 23444444444
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.54 E-value=0.0001 Score=67.64 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=40.7
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+++|.++.+.++.+++. ..++++|+||+|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 489999999999999885 3688999999999999999999987654
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.54 E-value=0.0039 Score=61.76 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred CCCcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 60 LQNELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|....++++.+.+. ....|.|+|++|+|||++|+.+.+...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34689999999999888776 566788999999999999999987543
No 202
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00082 Score=58.17 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+..-|-.++++.|.+... .++-|.++||+|.|||-+|++++++-
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 556677777777777543 57889999999999999999999864
No 203
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0017 Score=63.72 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=86.0
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
....|.+...+.+.+... ..+.+.++||||.|||.||+.++......|-.+..- .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~------ 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----E------ 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----H------
Confidence 555666666666666543 455899999999999999999998655443211111 0
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCC-------------hhhHHHHHhccCCCCCCC--eE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTC-------------FNQIESLVGSLDRLLPES--RI 190 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~-------------~~~~~~l~~~~~~~~~~~--~i 190 (381)
+.... . ......+.. +..+....+++|++|+++. ......++..+....... .|
T Consensus 312 ----l~sk~----v--Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 312 ----LLSKW----V--GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----Hhccc----c--chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 00000 0 111122222 3334457899999999942 134555555554333333 33
Q ss_pred EEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC
Q 040862 191 LITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG 238 (381)
Q Consensus 191 liTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G 238 (381)
|-||-... +++-+.++..++|..+........ ...-..+.+.+.+.|
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~-~~~~~~~~l~~~t~~ 445 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPL-AEDVDLEELAEITEG 445 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcc-hhhhhHHHHHHHhcC
Confidence 44443322 667788888888887774333220 111234455555555
No 204
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00051 Score=71.32 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhhC---------C--CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG---------A--APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------~--~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+..++.+...+. + ...+.++||+|+|||+||+.+++.+-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 789999999999988764 1 23567999999999999999998764
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.00058 Score=70.95 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHhhC-------C----CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG-------A----APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~----~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+..++.+...+. . ...+.++|++|+|||+||+.+++.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 678999999999888775 1 13688999999999999999998654
No 206
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00058 Score=62.87 Aligned_cols=89 Identities=19% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc----
Q 040862 71 VEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD---- 142 (381)
Q Consensus 71 l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 142 (381)
+.++.+.|. ...++.|-|.||||||||..+++.++.+.. .+.|++ .. ....++.-. ...+...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-GE------ES~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-GE------ESLQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-CC------cCHHHHHHH-HHHhCCCccce
Confidence 455666666 678999999999999999999999988765 455544 22 122222111 1222211
Q ss_pred -CCCCCCHHHHHHHhC-CCeEEEEEeCC
Q 040862 143 -VNVIPHIDLNFRRLS-RRKVLIVLDDV 168 (381)
Q Consensus 143 -~~~~~~~~~l~~~l~-~~~~LlvlDdv 168 (381)
.....+++.+...+. .++-++|+|.+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 122345555666555 58899999998
No 207
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.51 E-value=0.0024 Score=58.89 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..++|+...++++.+.+. ....|.|+|++|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 468999999998888776 5678899999999999999988753
No 208
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=8.5e-05 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 209
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.50 E-value=0.0055 Score=62.66 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|+...++.+.+.+. ....|.|+|++|+|||.+|+.+....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 579999999998876655 56689999999999999999998754
No 210
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.49 E-value=0.00053 Score=60.79 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhc-------cCCCCCCHHH-
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLK-------DVNVIPHIDL- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~- 151 (381)
.++-+.|.|.+|+|||+|+..+++.+..+|...+++....+. .....++...+...-.. .....+...+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 578899999999999999999999988777767776655433 33344444444332110 0111111111
Q ss_pred --------HHHHh---CCCeEEEEEeCCCCh
Q 040862 152 --------NFRRL---SRRKVLIVLDDVTCF 171 (381)
Q Consensus 152 --------l~~~l---~~~~~LlvlDdv~~~ 171 (381)
+.+++ .++++|+++||+...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 22333 378999999998543
No 211
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.46 E-value=0.0029 Score=55.24 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=111.8
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc------cccceEEEEe---------cccc---
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR------NFEGSCFLEN---------VREE--- 121 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~---------~~~~--- 121 (381)
..+.++++.-..|..... +.+...++||+|.||-|.+..+.+++-. +-+...|.+. +...
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 346777777777777666 5688999999999999999988876422 0111122211 1100
Q ss_pred ----ccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeE-EEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEe
Q 040862 122 ----SQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKV-LIVLDDVTCF--NQIESLVGSLDRLLPESRILITT 194 (381)
Q Consensus 122 ----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTs 194 (381)
++...--.-+.++++..+........ ...+++ ++|+-.++.. +.-.++......+...+|+|+..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~--------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c 164 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIET--------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC 164 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhh--------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe
Confidence 00011112334444444333211110 011233 5666666543 23334444444446778887755
Q ss_pred cccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhcc--------
Q 040862 195 RNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE-------- 252 (381)
Q Consensus 195 r~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~-------- 252 (381)
.+-. ++..+.+|....+++.+.+....-+ .+.+.+|++.++|+-.---.+....+-
T Consensus 165 ns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~ 242 (351)
T KOG2035|consen 165 NSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTAN 242 (351)
T ss_pred cCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccccc
Confidence 4433 8889999999999988866664444 588999999999985433232222221
Q ss_pred ---CCHHHHHHHHHHHHh
Q 040862 253 ---RKREVWENAIKKLKN 267 (381)
Q Consensus 253 ---~~~~~~~~~~~~l~~ 267 (381)
-+..+|+.+..+...
T Consensus 243 ~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 243 SQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred CCCCCCccHHHHHHHHHH
Confidence 135568777776654
No 212
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00065 Score=58.32 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+-|.+-..+++.+... .++-|.++||||+|||-||+.+++.-..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a 215 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA 215 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch
Confidence 567788888888888754 6789999999999999999999986443
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.43 E-value=0.00031 Score=59.76 Aligned_cols=131 Identities=13% Similarity=0.192 Sum_probs=71.4
Q ss_pred HHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCC
Q 040862 70 RVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPH 148 (381)
Q Consensus 70 ~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 148 (381)
+.+.+...+. +.++++|.|++|+|||+++..+...+...- ..+.+.... ......+....... ...
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT---------~~Aa~~L~~~~~~~---a~T 72 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPT---------NKAAKELREKTGIE---AQT 72 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESS---------HHHHHHHHHHHTS----EEE
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCc---------HHHHHHHHHhhCcc---hhh
Confidence 3444555554 567999999999999999999888766553 233333111 11122222221110 111
Q ss_pred HHHHHHHh----------CCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHHHhh
Q 040862 149 IDLNFRRL----------SRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFNRHA 215 (381)
Q Consensus 149 ~~~l~~~l----------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~~~~ 215 (381)
+..+.... ....-+||+|++.. ...+..++.... ..++++|+.--...++|.........+....
T Consensus 73 i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL~pV~~g~~~~~l~~~~ 149 (196)
T PF13604_consen 73 IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQLPPVGAGSPFADLQESG 149 (196)
T ss_dssp HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSHHHCSTTCHHHHHCGCS
T ss_pred HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchhcCCcCCcHHHHHHhcC
Confidence 11111000 12335999999854 346777776655 3577999988877777777666666555443
No 214
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0033 Score=57.44 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCCcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 60 LQNELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.-+.+.|.++..+.|++..- .=+-|.++||||.|||-||++++.+..
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 34788899888888888643 346889999999999999999998765
No 215
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0024 Score=59.40 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEVLKD---VNVIPHIDLNFRR 155 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~l~~~ 155 (381)
...+++++|++|+||||++.+++......+. ..+.+...... .....+-++.....+... ......+......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~---R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY---RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc---cccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 4779999999999999999999987644332 22333322211 112222333333333322 1122233334445
Q ss_pred hCCCeEEEEEeCCC
Q 040862 156 LSRRKVLIVLDDVT 169 (381)
Q Consensus 156 l~~~~~LlvlDdv~ 169 (381)
+.++ -++++|...
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 5555 466699984
No 216
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00017 Score=57.54 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=27.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccc-ccceEEE
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFL 115 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 115 (381)
--++|+|+||+||||++..+++.++++ |...-++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 357899999999999999999987766 5444333
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00066 Score=69.15 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+..++.|.+.+. ....+.++||+|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999888765 124688999999999999999998773
No 218
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.38 E-value=0.00046 Score=60.19 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...++.|+|++|+|||+|+.+++......
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 67899999999999999999998765443
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.001 Score=66.83 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=69.5
Q ss_pred CcccchhhHHHHHHHhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHH
Q 040862 62 NELVGVESRVEEIESLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLAS 130 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 130 (381)
...+|.+..+..+.+.+. ........||.|+|||-||++++..+-..=...+-+ +.++.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy--------- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEY--------- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHH---------
Confidence 789999999999988875 234667799999999999999998764332222222 12111
Q ss_pred HHHHHHHHHhccCCC---CCCHHHHHHHhCCCeE-EEEEeCCC--ChhhHHHHHhccC
Q 040862 131 LQQKLLSEVLKDVNV---IPHIDLNFRRLSRRKV-LIVLDDVT--CFNQIESLVGSLD 182 (381)
Q Consensus 131 l~~~l~~~~~~~~~~---~~~~~~l~~~l~~~~~-LlvlDdv~--~~~~~~~l~~~~~ 182 (381)
.-+.-.+.+.+..+. ...-..+-+..+.+|+ +|.||+++ +++.++-|+..+.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 111223333333222 2223346677777776 88999996 4455666666554
No 220
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.36 E-value=0.0079 Score=49.81 Aligned_cols=123 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC------CCCCCHHHHHHH
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV------NVIPHIDLNFRR 155 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~l~~~ 155 (381)
..+.|.|++|+|||++|..++...... .+++... ...-.+....+........ .....+..+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~---~~~iat~------~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ---VLYIATA------QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC---cEeCcCC------CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHh
Confidence 368999999999999999998765321 2332211 1111233334333322221 112234443333
Q ss_pred hCCCeEEEEEeCCCC--------h--h----hHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHHHhh
Q 040862 156 LSRRKVLIVLDDVTC--------F--N----QIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFNRHA 215 (381)
Q Consensus 156 l~~~~~LlvlDdv~~--------~--~----~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~~~~ 215 (381)
..++.-++++|.+.. . + .+..+...+. ..+..+|+|+..........+.....|...+
T Consensus 73 ~~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Evg~g~vp~~~~~r~~~d~l 144 (170)
T PRK05800 73 DAAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEVGMGIVPEYRLGRHFRDIA 144 (170)
T ss_pred hcCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCCcccccCCCHHHHHHHHHH
Confidence 223344799998721 1 1 2233433333 3455678888766655555556666666655
No 221
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.00095 Score=56.65 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc----ccceEEEEecccc-ccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhC
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN----FEGSCFLENVREE-SQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLS 157 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 157 (381)
...|.|+||+|||||.+.+++-+... .+..+.+.+-++. ........ +..+...+...++.......+...-.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvp--q~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVP--QHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCc--hhhhhhhhhhcccchHHHHHHHHHHh
Confidence 37899999999999999999865433 2333333322211 11011111 11111111111111111111222223
Q ss_pred CCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEeccccCC
Q 040862 158 RRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQMK 200 (381)
Q Consensus 158 ~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~l~ 200 (381)
..|-++|+|.+...++..+++..+. .|.+++.|..-..++
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG~~ie 256 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHGNGIE 256 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeeccccHH
Confidence 4778999999988877777666543 577777776654433
No 222
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.35 E-value=0.0011 Score=62.07 Aligned_cols=81 Identities=12% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC-----CCCCCHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV-----NVIPHIDLNFR 154 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~~l~~ 154 (381)
...++.|.|++|+|||||+.+++.........++|+. .. .....+... ...+.... .....++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~E------Es~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~ 152 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-GE------ESPEQIKLR-ADRLGISTENLYLLAETNLEDILA 152 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-CC------cCHHHHHHH-HHHcCCCcccEEEEccCcHHHHHH
Confidence 5789999999999999999999987765434444543 22 122222221 12222111 11233455555
Q ss_pred HhC-CCeEEEEEeCC
Q 040862 155 RLS-RRKVLIVLDDV 168 (381)
Q Consensus 155 ~l~-~~~~LlvlDdv 168 (381)
.+. .++-++|+|.+
T Consensus 153 ~i~~~~~~lVVIDSI 167 (372)
T cd01121 153 SIEELKPDLVIIDSI 167 (372)
T ss_pred HHHhcCCcEEEEcch
Confidence 444 46778999997
No 223
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.35 E-value=0.015 Score=57.12 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=40.5
Q ss_pred CCCcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 60 LQNELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|+...++++.+.+. ....|.|+|++|+|||++|+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34689999999998888776 677899999999999999999987644
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0026 Score=60.37 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...-|.+.|++|+|||+||.+++. ...|+.+-.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKii 570 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKII 570 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEe
Confidence 445678999999999999999986 4567755544
No 225
>PRK06696 uridine kinase; Validated
Probab=97.32 E-value=0.00039 Score=60.53 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=34.4
Q ss_pred chhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 66 GVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 66 GR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.|...+++|.+.+. .+.+|+|.|++|+||||||..++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46666677666653 57799999999999999999999987543
No 226
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.31 E-value=0.00048 Score=64.05 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccc--eEEEEeccccccCCCChHHHHHHHHHHHhcc--CCCCCCHHH-HHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEG--SCFLENVREESQKPGGLASLQQKLLSEVLKD--VNVIPHIDL-NFR 154 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~-l~~ 154 (381)
....++|+|+.|+||||++..++..+....+. .++.. .+... ..+...... ...+... ......... +..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE--~~~~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIE--FVYDEIETI-SASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCce--Eeccccccc-cceeeeeeccccccCHHHHHHH
Confidence 67899999999999999999998876543221 22221 11110 000010000 0000000 001112222 667
Q ss_pred HhCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 155 RLSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 155 ~l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
.++..|-.+++..+.+.+.....+..
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 78888899999999888877655443
No 227
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.31 E-value=0.0011 Score=57.44 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=32.7
Q ss_pred HHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 73 EIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 73 ~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
.|-++|. ...++.|+|++|+|||+++.+++.....+-..++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444554 5789999999999999999999987755434455553
No 228
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.0014 Score=54.66 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=25.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
+.+.++|.||+||||+|+++++.++++-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 57889999999999999999998776643
No 229
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.30 E-value=0.00078 Score=62.70 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
.++-+-|+|+.|.|||-|+..+++.+..+-.. ..-+.++...+-..+.........+..+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~-------------R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR-------------RVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc-------------cccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 47889999999999999999999876432111 11122333333333333333445566677788888
Q ss_pred eEEEEEeCCC--Chh---hHHHHHhccCCCCCCCeEEEEecccc
Q 040862 160 KVLIVLDDVT--CFN---QIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 160 ~~LlvlDdv~--~~~---~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
..||.||++. +.. .+..++..+. ..|. +||+|.|..
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRP 168 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCC
Confidence 8899999983 332 3555555544 2344 555555544
No 230
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.29 E-value=0.0011 Score=58.10 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 6889999999999999999999775433333344443
No 231
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.28 E-value=0.00055 Score=58.15 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=36.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD 142 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 142 (381)
+++++++|+.|+||||.+.+++..+..+ ...+-+...... .....+-++...+.+.-.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~---R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY---RIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS---STHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC---CccHHHHHHHHHHHhccc
Confidence 4689999999999999999999987666 333333322211 333344444555555533
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.27 E-value=0.003 Score=61.64 Aligned_cols=43 Identities=33% Similarity=0.447 Sum_probs=31.6
Q ss_pred ccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 64 LVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++--..-++++..||. ..+++.|+||+|+||||.++.+++++.
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3333444555555554 357899999999999999999998763
No 233
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.27 E-value=0.00031 Score=66.89 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=42.0
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..|+||++.++.+...+.....|.|.|+||+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 5899999999999999988889999999999999999999987644
No 234
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.26 E-value=0.003 Score=51.32 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=59.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHh-----cc-----CCCCCC---
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVL-----KD-----VNVIPH--- 148 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~-----~~~~~~--- 148 (381)
..+-|++.+|.||||+|...+-+...+-..+.++..+.... ..+-...+..+ ..+. .. ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 57889999999999999998887655534444444333311 11222222222 0000 00 000000
Q ss_pred ----HHHHHHHhC-CCeEEEEEeCCCC-----hhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 149 ----IDLNFRRLS-RRKVLIVLDDVTC-----FNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 149 ----~~~l~~~l~-~~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
....+..+. +.-=|||||++.. .-..+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 011233333 3456999999832 1223334433333356779999999754
No 235
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.26 E-value=0.0091 Score=54.59 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhCCChHHH
Q 040862 199 MKGFGDDHALELFNRHAFRQNLVD-VDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 199 l~~L~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLal 243 (381)
+++++.+|+..++....-..-... ...+...+++....+|||.-+
T Consensus 261 v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 261 VPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 567899999999887663333222 233455666777779999654
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0033 Score=58.48 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++++++|+|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999999877544
No 237
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0017 Score=56.69 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHhCCCeEEEEEeCC----C--ChhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 152 NFRRLSRRKVLIVLDDV----T--CFNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 152 l~~~l~~~~~LlvlDdv----~--~~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
+.++|.+.+=||+||+- | ....+-.++..+.. .|+-||+.|.+-.
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~ 200 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLG 200 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcH
Confidence 77788899999999985 2 23345566666553 3778888888643
No 238
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.22 E-value=0.0026 Score=57.21 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 115 (381)
...++.|.|++|+|||+++.+++.....+ -..++|+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 57899999999999999999998876544 2334444
No 239
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=97.22 E-value=0.0015 Score=59.85 Aligned_cols=32 Identities=31% Similarity=0.277 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEG 111 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 111 (381)
.++.+.|-|.||.|||++|.++.+.++++.+.
T Consensus 9 ~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~v 40 (484)
T PF07088_consen 9 PGQTLLIKGEPGTGKTTFALELLNSLKDHGNV 40 (484)
T ss_pred CCcEEEEecCCCCCceeeehhhHHHHhccCCe
Confidence 57889999999999999999999999888663
No 240
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0055 Score=55.74 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=44.0
Q ss_pred CccCCCcccchhhHHHHHHHhhC----------------CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 57 FDSLQNELVGVESRVEEIESLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 57 ~~~~~~~~vGR~~~l~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
+.+.-.++-|-+...+.+.+..- .++-|.++||+|.|||-||+.++.+....|-
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI 156 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFI 156 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence 44444788889998888888642 5788999999999999999999998776654
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.20 E-value=0.001 Score=58.21 Aligned_cols=113 Identities=23% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CCChHHHHHHHHHHHhccCCC---------CCCH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PGGLASLQQKLLSEVLKDVNV---------IPHI 149 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~---------~~~~ 149 (381)
++..++|+|++|+|||||++.+..-...-. +.+++..- +.... .....+...+++..++..... ....
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~-~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGK-DITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCc-chhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 788999999999999999999988554332 23443311 11110 111223344455544422100 0111
Q ss_pred HH--HHHHhCCCeEEEEEeCCCC------hhhHHHHHhccCCCCCCCeEEEEe
Q 040862 150 DL--NFRRLSRRKVLIVLDDVTC------FNQIESLVGSLDRLLPESRILITT 194 (381)
Q Consensus 150 ~~--l~~~l~~~~~LlvlDdv~~------~~~~~~l~~~~~~~~~~~~iliTs 194 (381)
.. +.+++.-+|-++|.|+..+ ..++-.++..+.....-+.+.||-
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 11 7788888999999998733 233444444443322334444443
No 242
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.00032 Score=58.07 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+-|.|+|++|+||||||+.+++.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 243
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00042 Score=57.94 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=30.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
.+.++++.|++|+||||+|+.++..+...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 577999999999999999999999887666555554
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.16 E-value=0.0037 Score=56.40 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35699999999999999999999877543
No 245
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.15 E-value=0.0017 Score=52.23 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=53.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
....++|.|+.|.|||||++.++...... ...+++.......-... + ... ....-.+.+.+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~-l-------------S~G-~~~rv~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQ-L-------------SGG-EKMRLALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEcc-C-------------CHH-HHHHHHHHHHHhcC
Confidence 67899999999999999999998754322 33343321100000010 0 000 00011155666677
Q ss_pred eEEEEEeCCC---ChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 160 KVLIVLDDVT---CFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 160 ~~LlvlDdv~---~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
+-++++|+-. +......+...+... +..||++|.+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~ 126 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 7899999973 333333333333222 2467777764
No 246
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.12 E-value=0.00052 Score=66.48 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=41.0
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+++|.+..++++.+.|. ..++++++||+|+|||+||+.+++-+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999999883 67899999999999999999999866543
No 247
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.11 E-value=0.00068 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=28.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
+.+|.|+|.+|+||||||+.+..++......++++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 56899999999999999999999987765444444
No 248
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.09 E-value=0.0024 Score=53.51 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=27.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
+...++|.|+.|.|||||++.++..... ....+++
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~ 58 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILL 58 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEE
Confidence 6789999999999999999999876433 2334444
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0058 Score=57.38 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++++++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 250
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.07 E-value=0.0031 Score=60.70 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=53.1
Q ss_pred HHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc----
Q 040862 71 VEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD---- 142 (381)
Q Consensus 71 l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 142 (381)
+..|.+.|. ...++.|.|++|+|||||+.+++......-..++|+. .. ....++... ...+...
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~E------es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GE------ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cc------ccHHHHHHH-HHHcCCChhcE
Confidence 344445554 5779999999999999999999987654333345543 22 222333222 2222211
Q ss_pred -CCCCCCHHHHHHHhC-CCeEEEEEeCCC
Q 040862 143 -VNVIPHIDLNFRRLS-RRKVLIVLDDVT 169 (381)
Q Consensus 143 -~~~~~~~~~l~~~l~-~~~~LlvlDdv~ 169 (381)
......+..+...+. .++-++|+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 111234555555554 367799999983
No 251
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.07 E-value=0.0035 Score=68.32 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++-|.++||+|+|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999864
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.07 E-value=0.0037 Score=52.29 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+..++|.|+.|.|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 678999999999999999999987543
No 253
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.00048 Score=54.05 Aligned_cols=22 Identities=55% Similarity=0.830 Sum_probs=20.4
Q ss_pred EEEecCCCCchhHHHHHHHhhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
|+|.|++|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 254
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.06 E-value=0.0031 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|.|+.|.|||||++.++....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999999987543
No 255
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.023 Score=53.44 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcccCCccCCCcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 41 MQRWRSALTEAANLSGFDSLQNELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 41 v~~~~~~l~~~~~~~~~~~~~~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+..|++.+.....-. .-..+-|-+..-+.+.+..- ..+-+.+.||+|.|||-|++.++.+..
T Consensus 136 ~~~i~~EI~~~~~~v----~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNV----GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred hHHHHHHHhccCCcc----cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhc
Confidence 445555544333322 22456665555555555422 355677999999999999999998764
Q ss_pred c
Q 040862 107 R 107 (381)
Q Consensus 107 ~ 107 (381)
.
T Consensus 212 a 212 (428)
T KOG0740|consen 212 A 212 (428)
T ss_pred c
Confidence 4
No 256
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.06 E-value=0.0096 Score=60.41 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=36.7
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.++|....++++.+... ....|.|+|++|+||+++|+.+.+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 568999988888777665 55668999999999999999998754
No 257
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.05 E-value=0.0037 Score=60.26 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=52.4
Q ss_pred HHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc----
Q 040862 71 VEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD---- 142 (381)
Q Consensus 71 l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 142 (381)
+..|-+.|. ...++.|.|++|+|||||+.+++.....+-..++|+. .. ....++.... ..+.-.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~E------Es~~qi~~ra-~rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-GE------ESLQQIKMRA-IRLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-Cc------CCHHHHHHHH-HHcCCChHHe
Confidence 344555554 6789999999999999999999887655433345543 22 1222222221 111111
Q ss_pred -CCCCCCHHHHHHHhC-CCeEEEEEeCC
Q 040862 143 -VNVIPHIDLNFRRLS-RRKVLIVLDDV 168 (381)
Q Consensus 143 -~~~~~~~~~l~~~l~-~~~~LlvlDdv 168 (381)
......+..+...+. .++-++|+|.+
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSI 179 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 111233455555554 36778999998
No 258
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.05 E-value=0.0011 Score=65.97 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=55.6
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHHHh
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSEVL 140 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 140 (381)
.+++|.+..++.|...+...+.+.++|++|+||||+|+.+++.+... ++...|+.+. .....++.+.+....+
T Consensus 31 ~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHHHHHHHHhcC
Confidence 78999999999999888877899999999999999999999876543 4556666542 4455555555554443
No 259
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.05 E-value=0.0016 Score=65.08 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEec
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENV 118 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 118 (381)
++++|.+..++.+...+...+.+.++|++|+|||++++.++..+... |...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 68899999999999888877788899999999999999999987654 3434444433
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.04 E-value=0.00037 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=21.8
Q ss_pred EEEecCCCCchhHHHHHHHhhhccc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
|.|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876654
No 261
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.03 E-value=0.0018 Score=58.24 Aligned_cols=120 Identities=21% Similarity=0.156 Sum_probs=64.4
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
..+.-.....+.+.++|. ..+.+.|.|++|+||||++..++..+...-..++.+-+..+.......
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~---------- 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN---------- 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc----------
Confidence 445444444455555554 589999999999999999999998765551222222221111000000
Q ss_pred HHhcc-C-CCCCCHHHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeE-EEEec
Q 040862 138 EVLKD-V-NVIPHIDLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRI-LITTR 195 (381)
Q Consensus 138 ~~~~~-~-~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~i-liTsr 195 (381)
..... . ....-.+.+...|+..+=.++++++.+.+.... .... ..|..+ +-|..
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~---~tGh~~~~tT~H 230 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAA---NTGHLGSLTTLH 230 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHH---HTT-EEEEEEEE
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhh---ccCCceeeeeee
Confidence 00000 1 112222336777888888999999988877766 3332 245556 44444
No 262
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.0022 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
...+++|.|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 678999999999999999998853
No 263
>PRK07667 uridine kinase; Provisional
Probab=97.01 E-value=0.0013 Score=55.84 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...+|+|.|++|+||||+|..+...+...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 55789999999999999999999877543
No 264
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.01 E-value=0.014 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
+-+.+|+||.|.|||+|.+.+..
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis 109 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLIS 109 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhh
Confidence 44678899999999999999876
No 265
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.00 E-value=0.0017 Score=54.79 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 71 VEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 71 l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.|...+.....++|.|++|.|||||++.++..+..
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3444445557889999999999999999999886653
No 266
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.011 Score=56.58 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988765
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.004 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|.|+.|.|||||++.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 688999999999999999999988643
No 268
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.97 E-value=0.0032 Score=57.26 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=52.6
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccc-cceE-EEEeccccccCCCChHHHHHHHHHHHhccCCCCCCH
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF-EGSC-FLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI 149 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 149 (381)
+.|..++...+.+.|+|++|+||||+++.++..+.... +..+ .+-+..+......+.. .+. ........
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~-~~~~~~~~ 193 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLR-TSDDAISM 193 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEE-ecCCCCCH
Confidence 33444455677889999999999999999998765431 1222 2221111110000000 000 01111123
Q ss_pred H-HHHHHhCCCeEEEEEeCCCChhhHHH
Q 040862 150 D-LNFRRLSRRKVLIVLDDVTCFNQIES 176 (381)
Q Consensus 150 ~-~l~~~l~~~~~LlvlDdv~~~~~~~~ 176 (381)
. .+...|+..+=.||+..+.+.+.+..
T Consensus 194 ~~~l~~aLR~~pD~iivGEiR~~ea~~~ 221 (299)
T TIGR02782 194 TRLLKATLRLRPDRIIVGEVRGGEALDL 221 (299)
T ss_pred HHHHHHHhcCCCCEEEEeccCCHHHHHH
Confidence 2 36667777787888888877665543
No 269
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0064 Score=59.58 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+..|.++..+++.+.+. -++-|.++||||.|||.||++++.+..-
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 678898888777777654 2578899999999999999999976543
No 270
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.97 E-value=0.00067 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986543
No 271
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.00099 Score=47.03 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=20.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++.|.|+||.|||+++...+..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57788899999999996666655543
No 272
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.96 E-value=0.00072 Score=57.51 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.5
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987654
No 273
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.95 E-value=0.017 Score=56.90 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..|+|....++++.+.+. ....|.|+|++|+||+.+|+.+...
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 579999998888776654 5667889999999999999997553
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.95 E-value=0.0013 Score=54.25 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCC---CCHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVI---PHIDLNFRRL 156 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~~l~~~l 156 (381)
.+..++|.|+.|.|||||++.++..... ....+++... ... .......... .+..-.... ...-.+.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~--~~~~~~~~~~---~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVS--FASPRDARRA---GIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECC--cCCHHHHHhc---CeEEEEecCHHHHHHHHHHHHH
Confidence 6889999999999999999999875432 2334444311 111 1111111000 010000000 0111156667
Q ss_pred CCCeEEEEEeCCC---ChhhHHHHHhccCCC-CCCCeEEEEecc
Q 040862 157 SRRKVLIVLDDVT---CFNQIESLVGSLDRL-LPESRILITTRN 196 (381)
Q Consensus 157 ~~~~~LlvlDdv~---~~~~~~~l~~~~~~~-~~~~~iliTsr~ 196 (381)
-..+-++++|+-. +......+...+... ..+..||++|.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 7788899999973 222222332222211 235567777765
No 275
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.94 E-value=0.021 Score=47.14 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHhcccCCccCCCcccchhhHHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 49 TEAANLSGFDSLQNELVGVESRVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 49 ~~~~~~~~~~~~~~~~vGR~~~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.++.....|+..-+.|-++ +..|. ..++.+|+|..|+|||||...++-.
T Consensus 11 ekve~~~eYp~slPa~r~l-------~~~LeF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 11 EKVESFEEYPFSLPAFRHL-------EERLEFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred hcccchhhCcccchHHHhh-------hhhccccCceEEEEcCCCccHHHHHHHHHhh
Confidence 3444555555544444333 33555 7899999999999999999998763
No 276
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=96.94 E-value=0.0061 Score=54.08 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=72.4
Q ss_pred CcccchhhHHHHHHHhhC---------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHH
Q 040862 62 NELVGVESRVEEIESLLG---------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQ 132 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 132 (381)
+.|+....+.+-|..-.. +..-+++.|-+|+|||.|+.++.+.+.+.......+..+.+.. ..-.++.
T Consensus 163 P~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~GvGERT---REGNDLY 239 (521)
T KOG1350|consen 163 PEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLY 239 (521)
T ss_pred hhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEeecccccc---ccccHHH
Confidence 677777766666655433 6788999999999999999999998866555444444444332 2223455
Q ss_pred HHHHHHHhcc-CCCCC------------------------CHHHHHHHhCCCeEEEEEeCCCCh----hhHHHHHhccC
Q 040862 133 QKLLSEVLKD-VNVIP------------------------HIDLNFRRLSRRKVLIVLDDVTCF----NQIESLVGSLD 182 (381)
Q Consensus 133 ~~l~~~~~~~-~~~~~------------------------~~~~l~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~ 182 (381)
.+|...-... ....+ .+.+..+...++.+||++||+... .+...++..++
T Consensus 240 ~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiP 318 (521)
T KOG1350|consen 240 HEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 318 (521)
T ss_pred HHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCc
Confidence 5554432221 11100 012244445579999999999543 34666666655
No 277
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.93 E-value=0.0018 Score=62.89 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=57.8
Q ss_pred HHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCC
Q 040862 70 RVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPH 148 (381)
Q Consensus 70 ~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 148 (381)
.++.+..++. ...++.|+|+.|.||||++..+...+...-..++.+-+.-+.. .... .+..........
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~--~~~~--------~q~~v~~~~g~~ 299 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ--IEGI--------GQIQVNPKIGLT 299 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee--cCCC--------ceEEEccccCcc
Confidence 4455566555 5678999999999999999988876643322222221111100 0000 000000011112
Q ss_pred H-HHHHHHhCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 149 I-DLNFRRLSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 149 ~-~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
. ..+...++..|=+|++.++.+.+.....+..
T Consensus 300 f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 300 FAAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 2 3377778888889999999888766555443
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.93 E-value=0.00083 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 279
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0054 Score=57.70 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999754
No 280
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=96.92 E-value=0.002 Score=58.54 Aligned_cols=118 Identities=19% Similarity=0.369 Sum_probs=69.7
Q ss_pred CcccchhhHHHHHHHhhC---------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHH
Q 040862 62 NELVGVESRVEEIESLLG---------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQ 132 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 132 (381)
+.|.-.+...+-|+.-.+ ++.-++|.|-+|+|||.|++++.+.+..++.....+..+.+... --.++.
T Consensus 119 p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy 195 (468)
T COG0055 119 PSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLY 195 (468)
T ss_pred CchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHH
Confidence 445444444444444332 67889999999999999999999998877776666666655432 234455
Q ss_pred HHHHHHHhcc----------CCCCCC---------HHHHHHHhCCCeEEEEEeCCCCh----hhHHHHHhccC
Q 040862 133 QKLLSEVLKD----------VNVIPH---------IDLNFRRLSRRKVLIVLDDVTCF----NQIESLVGSLD 182 (381)
Q Consensus 133 ~~l~~~~~~~----------~~~~~~---------~~~l~~~l~~~~~LlvlDdv~~~----~~~~~l~~~~~ 182 (381)
.++..+-... ++...+ +.+..+--.++.+|+++||+... .++..++...+
T Consensus 196 ~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 196 HEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred HHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 5554442211 111111 11233333468999999999432 23444444433
No 281
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.91 E-value=0.0035 Score=52.18 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|.|+.|.|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 678999999999999999999987543
No 282
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.90 E-value=0.0016 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=30.1
Q ss_pred hHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhh
Q 040862 69 SRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 69 ~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.-+++|.+.+.+ +.+++.|++|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 446777777776 99999999999999999999864
No 283
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0087 Score=53.06 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc---CCCCCCH-HHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD---VNVIPHI-DLNFRR 155 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~-~~l~~~ 155 (381)
....|.|+||.|+||||-.......+-+++...+.-. . +.-+....--.++..+ .....+. ..++.+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI--------E-DPIE~vh~skkslI~QREvG~dT~sF~~aLraA 194 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI--------E-DPIEYVHESKKSLINQREVGRDTLSFANALRAA 194 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe--------c-CchHhhhcchHhhhhHHHhcccHHHHHHHHHHH
Confidence 6789999999999999998888887777766555443 1 1111111111122211 1112222 237888
Q ss_pred hCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 156 LSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 156 l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
|+.-|=+|++-++.+.+.+..-+..
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHH
Confidence 8888889999999888776655443
No 284
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.89 E-value=0.0043 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...++.|+|++|+|||+|+.+++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 57899999999999999999998653
No 285
>PRK07261 topology modulation protein; Provisional
Probab=96.89 E-value=0.00078 Score=56.00 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.88 E-value=0.017 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.9
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++.+.|++|+||||++..++..+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999877655
No 287
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.88 E-value=0.015 Score=60.59 Aligned_cols=117 Identities=22% Similarity=0.228 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc----cceEEEEeccccccCCCChH--HHHHHHHHHHhccCCCCCCHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF----EGSCFLENVREESQKPGGLA--SLQQKLLSEVLKDVNVIPHIDLNF 153 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~~~~~~l~ 153 (381)
...-+.|.|.+|.||||+...++-....+. +..+++. +........... .+..-+...+..............
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 299 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQ 299 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHH
Confidence 455789999999999999999987544332 2222221 211110001111 122222222222233333333346
Q ss_pred HHhCCCeEEEEEeCCCChh------hHHHHHhccCCCCCCCeEEEEecccc
Q 040862 154 RRLSRRKVLIVLDDVTCFN------QIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 154 ~~l~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
..+...++++++|.++... .+..+-..+. .-+.+++|+|+|...
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~ 349 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDT 349 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccch
Confidence 7888999999999996532 1222111111 236889999998876
No 288
>PRK08233 hypothetical protein; Provisional
Probab=96.88 E-value=0.00089 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 289
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.88 E-value=0.0036 Score=58.43 Aligned_cols=96 Identities=19% Similarity=0.177 Sum_probs=54.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccC-CCChHHHHHHHHHHHhccCCCCCCHH-HHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQK-PGGLASLQQKLLSEVLKDVNVIPHID-LNFRRL 156 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l 156 (381)
....+.|+|+.|+||||++..++..+.... +..++.. .+.... ......+....-..+ ........ .+...+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti--Edp~E~~~~~~~~~~~~~q~ev---g~~~~~~~~~l~~aL 222 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY--EDPIEYILGSPDDLLPPAQSQI---GRDVDSFANGIRLAL 222 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE--ecCchhccCCCceeeccccccc---CCCccCHHHHHHHhh
Confidence 667899999999999999999988765432 2233322 111110 000000000000000 11112333 367788
Q ss_pred CCCeEEEEEeCCCChhhHHHHHhc
Q 040862 157 SRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 157 ~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
+..|=.|+++++.+.+..+..+..
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHHH
Confidence 889999999999988877765544
No 290
>PRK06762 hypothetical protein; Provisional
Probab=96.87 E-value=0.00096 Score=55.12 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=22.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 291
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.87 E-value=0.0021 Score=50.60 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 74 IESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 74 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
|.+.+....+++|.|+.|+||||+++.+++.+.
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 334444778999999999999999999998753
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.87 E-value=0.0024 Score=61.61 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=32.3
Q ss_pred cchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 65 VGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 65 vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
-++...+..|.+.+. .+++++|+|++|+||||++..++..+..+
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344455555555432 57899999999999999999998866543
No 293
>PRK14974 cell division protein FtsY; Provisional
Probab=96.86 E-value=0.011 Score=54.54 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+++++|++|+||||++..++..+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999877654
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.015 Score=53.90 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++++++|+.|+||||++..++..+..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999876444
No 295
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.86 E-value=0.0016 Score=54.78 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
.++++|+||+|+|||||+..++......|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 688999999999999999999999888886555543
No 296
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.85 E-value=0.0047 Score=56.44 Aligned_cols=95 Identities=20% Similarity=0.151 Sum_probs=52.0
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEE-EeccccccCCCChHHHHHHHHHHHhccCCCCCCH
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFL-ENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI 149 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 149 (381)
+.|..++.....+.|+|++|+||||++..++..+.... ...+.. -+..+........ ..-........
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~----------v~l~~~~~~~~ 204 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENA----------VALHTSDTVDM 204 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCE----------EEeccCCCcCH
Confidence 34455555677889999999999999999988763221 122222 1111110000000 00000111122
Q ss_pred H-HHHHHhCCCeEEEEEeCCCChhhHHH
Q 040862 150 D-LNFRRLSRRKVLIVLDDVTCFNQIES 176 (381)
Q Consensus 150 ~-~l~~~l~~~~~LlvlDdv~~~~~~~~ 176 (381)
. .+...|+..|-.+++.++.+.+.+..
T Consensus 205 ~~lv~~aLR~~PD~IivGEiRg~ea~~~ 232 (323)
T PRK13833 205 ARLLKSTMRLRPDRIIVGEVRDGAALTL 232 (323)
T ss_pred HHHHHHHhCCCCCEEEEeecCCHHHHHH
Confidence 2 25667777888888888877765543
No 297
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.85 E-value=0.002 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 298
>PHA02774 E1; Provisional
Probab=96.85 E-value=0.012 Score=57.41 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=30.8
Q ss_pred hHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 69 SRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 69 ~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.-+..|..++. +...++|+||||+|||.+|..+++-+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566666766 346899999999999999999998764
No 299
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.84 E-value=0.0027 Score=55.37 Aligned_cols=37 Identities=35% Similarity=0.387 Sum_probs=27.4
Q ss_pred hHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 69 SRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 69 ~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+.+...+....+.+|+||||+|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 4455666666655579999999999999888888776
No 300
>PTZ00301 uridine kinase; Provisional
Probab=96.84 E-value=0.0014 Score=56.25 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=24.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..+|+|.|++|+||||||..+..++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999998876443
No 301
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.83 E-value=0.011 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+..|.|++|+|||+|+..++..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998754
No 302
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.83 E-value=0.0081 Score=49.48 Aligned_cols=35 Identities=20% Similarity=0.044 Sum_probs=26.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...+.|++..|.||||.|..++.+...+-..++++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 46788999999999999999988765553334333
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.82 E-value=0.0065 Score=50.65 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...+++|.|+.|+|||||++.++....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 688999999999999999999887543
No 304
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.001 Score=57.45 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.++|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999874
No 305
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.81 E-value=0.00045 Score=61.62 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=21.6
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++|+|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 578999999999999999999977664
No 306
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0095 Score=50.24 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=30.0
Q ss_pred cccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHh
Q 040862 63 ELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-++|-...++.+.--+....+.++.||+|+||||+.+.+-+
T Consensus 15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 45665444444443344789999999999999999998744
No 307
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.81 E-value=0.0013 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++.++|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999988754
No 308
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.80 E-value=0.0038 Score=63.15 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..|+|+|.+|+|||||++-+..-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999999999999998763
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.80 E-value=0.00078 Score=52.18 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEecCCCCchhHHHHHHHhhhcccccc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRISRNFEG 111 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 111 (381)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6899999999999999999988777653
No 310
>PRK10436 hypothetical protein; Provisional
Probab=96.80 E-value=0.0032 Score=60.52 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=58.1
Q ss_pred HHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCC
Q 040862 70 RVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPH 148 (381)
Q Consensus 70 ~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 148 (381)
.++.+.+++. ....+.|+|+.|.||||.+..+...+... ...++. +.+... ..+..+ .+..........
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~T--iEDPvE--~~l~gi-----~Q~~v~~~~g~~ 275 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICS--VEDPVE--IPLAGI-----NQTQIHPKAGLT 275 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEE--ecCCcc--ccCCCc-----ceEeeCCccCcC
Confidence 4555666665 77899999999999999998877765433 222222 221111 000000 010001111112
Q ss_pred H-HHHHHHhCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 149 I-DLNFRRLSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 149 ~-~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
. ..+...|+..|=+|++.++.+.+.....+..
T Consensus 276 f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 276 FQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 2 2377788888999999999888876654443
No 311
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.79 E-value=0.03 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++++||.|+||||-..+++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999998888887654
No 312
>PTZ00494 tuzin-like protein; Provisional
Probab=96.78 E-value=0.49 Score=44.86 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCCcccchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 60 LQNELVGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..+.+|.|+.|-..+...|. -+++++++|..|.|||+|++....+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk 418 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV 418 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH
Confidence 44789999999888888886 6899999999999999999988764
No 313
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.77 E-value=0.0025 Score=55.57 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+|||++|.+++.........++|+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5789999999999999999999987655544455554
No 314
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.77 E-value=0.002 Score=59.61 Aligned_cols=49 Identities=29% Similarity=0.274 Sum_probs=42.0
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
..++|++..+..+...+...+.+.+.|++|+|||+||+.++..+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4589999999888888877888899999999999999999998775443
No 315
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.76 E-value=0.013 Score=56.01 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++.++|++|+||||++..++..+..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999999887654
No 316
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.76 E-value=0.0019 Score=55.62 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+|||+++.+++.........++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5789999999999999999999987655544556654
No 317
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.75 E-value=0.0017 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEecCCCCchhHHHHHHHhhhcc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.|+|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.0098 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998754
No 319
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.74 E-value=0.0034 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+|+|.||+|+|||||...+..
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999998865
No 320
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.74 E-value=0.0057 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...++.|+|++|.|||||.+.++..
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 6789999999999999999999875
No 321
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.73 E-value=0.0028 Score=57.98 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccce
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGS 112 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 112 (381)
+.+||.....+..--.+. .++.+.|.|+||.|||+||..+++.+..+.+..
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 689998877666444333 689999999999999999999999998775533
No 322
>PRK04040 adenylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=23.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+++|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998874
No 323
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.72 E-value=0.0016 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....+.|+|++|+||||+|+.++..+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998763
No 324
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.72 E-value=0.002 Score=56.29 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
++.+++|.|++|.|||||++.++..+....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 567999999999999999999998776543
No 325
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.71 E-value=0.0015 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.++++|.|++|+||||+++.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 326
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.71 E-value=0.0023 Score=54.15 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=34.2
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhh
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+++|.+.....|.-...+..-+.+.|++|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHh
Confidence 4678888888887777777889999999999999999999873
No 327
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.71 E-value=0.0014 Score=56.37 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++.+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 328
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.70 E-value=0.002 Score=60.39 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred CcccchhhHHHHHHHhhC----------------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.++..+.+...+. .++.+.++|++|+|||++|+.++..+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 356666666665544333 24789999999999999999999876544
No 329
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.013 Score=49.06 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++.+++|.|+.|.||||+.+.++.-+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhc
Confidence 68999999999999999999998854
No 330
>PRK03839 putative kinase; Provisional
Probab=96.66 E-value=0.0016 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.715 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.|+|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 331
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.66 E-value=0.05 Score=53.43 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|....++++.+... ....|.|+|++|+||+.+|+.+.+.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999998888775 66789999999999999999998643
No 332
>PHA02244 ATPase-like protein
Probab=96.66 E-value=0.0033 Score=57.97 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=35.0
Q ss_pred CcccchhhHHH----HHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVE----EIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~----~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..|+|....+. .+..++.....|.|+|++|+|||+||+.+++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57888666554 34444456677889999999999999999987543
No 333
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.64 E-value=0.018 Score=59.14 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=69.7
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCC
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIP 147 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 147 (381)
+.+.+.+...+...+++.|.|.+|+||||++..+...+...-. .+....... .+...+....+. ...
T Consensus 355 ~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~-~V~~~ApTg----------~Aa~~L~~~~g~--~a~ 421 (744)
T TIGR02768 355 EEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGY-RVIGAALSG----------KAAEGLQAESGI--ESR 421 (744)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEeCcH----------HHHHHHHhccCC--cee
Confidence 3344445545555689999999999999999999876654322 233321111 111111111000 011
Q ss_pred CHHHHH-HHh-----CCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHH
Q 040862 148 HIDLNF-RRL-----SRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELF 211 (381)
Q Consensus 148 ~~~~l~-~~l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~ 211 (381)
.+..+. ... ..+.-+||+|++.. ...+..++.... ..++++|+.--...|++...-.....+
T Consensus 422 Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD~~QLpsVgaG~~f~~l 491 (744)
T TIGR02768 422 TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGDPEQLQPIEAGAAFRAI 491 (744)
T ss_pred eHHHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECChHHccccccCcHHHHH
Confidence 111111 111 12557999999854 334555554322 357889988877777776665544433
No 334
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.63 E-value=0.035 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=26.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.++.++|++|+||||++..++..+..+....+.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 568999999999999999999987653223334443
No 335
>PRK10867 signal recognition particle protein; Provisional
Probab=96.63 E-value=0.035 Score=52.98 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.++.++|++|+||||++..++..+.......+.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV 135 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV 135 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 578999999999999999999987765533334443
No 336
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0026 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|+||+|+|||||++.+..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 36789999999999999999999876
No 337
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.014 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998754
No 338
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.62 E-value=0.018 Score=49.69 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|.|+.|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999874
No 339
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.61 E-value=0.0046 Score=61.40 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=58.9
Q ss_pred hHHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCC
Q 040862 69 SRVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIP 147 (381)
Q Consensus 69 ~~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 147 (381)
..++.+.+++. ...+|.|+|+.|+||||++..+...+... ...++. +.+... ..+..+ .+.........
T Consensus 303 ~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~t--iEdpvE--~~~~~~-----~q~~v~~~~g~ 372 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNIST--AEDPVE--INLPGI-----NQVNVNPKIGL 372 (564)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEE--ecCCce--ecCCCc-----eEEEeccccCC
Confidence 44556666666 67899999999999999998887765332 222221 111110 000000 01111111111
Q ss_pred CH-HHHHHHhCCCeEEEEEeCCCChhhHHHHHhc
Q 040862 148 HI-DLNFRRLSRRKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 148 ~~-~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
.. ..+...++..|=+|++.++.+.+.....+..
T Consensus 373 ~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~a 406 (564)
T TIGR02538 373 TFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA 406 (564)
T ss_pred CHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHH
Confidence 22 2377788888999999999988876655544
No 340
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0018 Score=51.94 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+++|.|+||+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 589999999999999999998764
No 341
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.59 E-value=0.0018 Score=55.64 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+|||||++.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999988654
No 342
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0093 Score=58.98 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+|+++||+|.||||+|.-+.+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 677999999999999999998765
No 343
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.59 E-value=0.0082 Score=51.61 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.-++|.|++|+|||+|+.++++.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred cCCEEEEEcCcccccchhhHHHHhccccc
Confidence 67889999999999999999999987543
No 344
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.58 E-value=0.041 Score=53.65 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=36.5
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|+...+..+...+. ....|.|+|.+|+|||++|+.+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 468999988888777665 56778999999999999999987753
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=96.57 E-value=0.0036 Score=54.54 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
+++..-+..+.++.|.|.||+|||+++.+++.....+-..++|+
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 33444444788999999999999999999988665443334444
No 346
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.44 Score=43.28 Aligned_cols=144 Identities=8% Similarity=0.095 Sum_probs=80.3
Q ss_pred HHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcc---------ccc-ceEEEEeccccccCCCChHHHHHHHHH
Q 040862 71 VEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR---------NFE-GSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 71 l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
++.+.+.+. -.++..++|+.|.||+++|..++..+-. ..+ ...++ +..+. .-...++. .+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~g~---~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIFDK---DLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccCCC---cCCHHHHH-HHHH
Confidence 344555554 3567779999999999999999987621 112 11222 11010 11111111 2221
Q ss_pred HHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEecccc--------------CCC
Q 040862 138 EVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNKQ--------------MKG 201 (381)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~ 201 (381)
.+.... .-.+.+=++|+|+++... ....++..+....+++.+|++|.+.. +.+
T Consensus 80 ~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 80 KLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred HhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 111100 001355688899986543 46667777776667777776665433 788
Q ss_pred CCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC
Q 040862 202 FGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG 238 (381)
Q Consensus 202 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G 238 (381)
++.++..+.+.... .+ ++.+..++..++|
T Consensus 149 l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 149 PDQQKILAKLLSKN-----KE---KEYNWFYAYIFSN 177 (299)
T ss_pred CCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCC
Confidence 99999888776531 11 2345555556665
No 347
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.012 Score=49.92 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+++|.|+.|.|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 348
>PRK06547 hypothetical protein; Provisional
Probab=96.56 E-value=0.0033 Score=52.17 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+|+|.|++|+||||+|..+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998864
No 349
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.55 E-value=0.0018 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+|+|.|+||+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.55 E-value=0.0077 Score=55.16 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=51.6
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccc--cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCH
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF--EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI 149 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 149 (381)
+.|...+...+.+.|+|++|+||||++..++..+.... ..++.+.+..+......+.. ++. ........
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v--------~~~-~~~~~~~~ 209 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV--------QYH-TSIDVNMT 209 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEE--------EEe-cCCCCCHH
Confidence 33444445788999999999999999999987642111 11222221111100000000 000 00111112
Q ss_pred HHHHHHhCCCeEEEEEeCCCChhhHHH
Q 040862 150 DLNFRRLSRRKVLIVLDDVTCFNQIES 176 (381)
Q Consensus 150 ~~l~~~l~~~~~LlvlDdv~~~~~~~~ 176 (381)
+.+...|+..+=.||+..+.+.+.+..
T Consensus 210 ~ll~~aLR~~PD~IivGEiR~~Ea~~~ 236 (319)
T PRK13894 210 ALLKTTLRMRPDRILVGEVRGPEALDL 236 (319)
T ss_pred HHHHHHhcCCCCEEEEeccCCHHHHHH
Confidence 236667777788889999887766553
No 351
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.54 E-value=0.0052 Score=56.26 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHhCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI-DLNFRRLSR 158 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~l~~~l~~ 158 (381)
....++|+|++|.|||||++.++..+..... .+.+.+..+.......... +...........-.. +.+...++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~-iv~ied~~El~~~~~~~~~----l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDER-IITIEDTREIFLPHPNYVH----LFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCcccc-EEEEcCccccCCCCCCEEE----EEecCCCCCcCccCHHHHHHHHhcC
Confidence 7889999999999999999999876654322 3333222211110000000 000000001111122 235667788
Q ss_pred CeEEEEEeCCCChhhHHHHHhc
Q 040862 159 RKVLIVLDDVTCFNQIESLVGS 180 (381)
Q Consensus 159 ~~~LlvlDdv~~~~~~~~l~~~ 180 (381)
.+-.+++|++...+.+. ++..
T Consensus 218 ~pd~ii~gE~r~~e~~~-~l~a 238 (308)
T TIGR02788 218 RPDRIILGELRGDEAFD-FIRA 238 (308)
T ss_pred CCCeEEEeccCCHHHHH-HHHH
Confidence 88899999998766554 3443
No 352
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.54 E-value=0.003 Score=59.18 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHhhC----------------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.+...+.+..++. .++.+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 456777776666665552 14789999999999999999999876443
No 353
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.54 E-value=0.0028 Score=53.35 Aligned_cols=33 Identities=24% Similarity=0.117 Sum_probs=25.5
Q ss_pred EEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 84 LGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.|.|+||+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999886654434455553
No 354
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.0032 Score=52.48 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=24.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.+++|.|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987754
No 355
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.53 E-value=0.002 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=22.1
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+++|.|++|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999875444
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.044 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++++++|+.|+||||++.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999999866
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.53 E-value=0.0044 Score=54.47 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|.|+||+|||+||.+++......-..++|+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6889999999999999999998876444444455554
No 358
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.53 E-value=0.0044 Score=54.03 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+..+++|+|+||.|||||..++...+.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 67799999999999999999999877654
No 359
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.52 E-value=0.0056 Score=55.70 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
+.++=.......+...+...+.+.|.|++|+|||++++.++..+...+
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 456666666677777777677899999999999999999999876543
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.52 E-value=0.0052 Score=54.99 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 74 IESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 74 l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
.++.|. +..++.|.|.+|+|||||+..++..+.....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 344444 6889999999999999999999998766544
No 361
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.51 E-value=0.044 Score=46.53 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.|+|.|.+|+|||||+..++..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 4789999999999999999863
No 362
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.51 E-value=0.033 Score=47.97 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|..|+|||+++..+..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg 22 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILG 22 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999886
No 363
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.50 E-value=0.0024 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988654
No 364
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.50 E-value=0.0032 Score=52.72 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.2
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999999987653
No 365
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.49 E-value=0.0073 Score=50.52 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=29.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
....|.|+|..|-||||.|...+-+...+-..+.++..+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 4679999999999999999998887655533344444343
No 366
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.49 E-value=0.0083 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
++..++|+|++|.|||||++.++..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999999764
No 367
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.49 E-value=0.0096 Score=56.72 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=64.6
Q ss_pred hhHHHHHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC-CC
Q 040862 68 ESRVEEIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV-NV 145 (381)
Q Consensus 68 ~~~l~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~ 145 (381)
....+.+..++. ...++.++||.|+||||..-.+...+......++-+.+.-+.. ..++. ++.... ..
T Consensus 244 ~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~--~~gI~--------Q~qVN~k~g 313 (500)
T COG2804 244 PFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ--LPGIN--------QVQVNPKIG 313 (500)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee--cCCcc--------eeecccccC
Confidence 344556666666 7889999999999999999999887655544333222111000 00000 000000 00
Q ss_pred CCCHHHHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEe
Q 040862 146 IPHIDLNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITT 194 (381)
Q Consensus 146 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTs 194 (381)
..-...++..|++.|=+|.+..+.+.+..+-.... .--+++++||
T Consensus 314 ltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqA----alTGHLVlST 358 (500)
T COG2804 314 LTFARALRAILRQDPDVIMVGEIRDLETAEIAVQA----ALTGHLVLST 358 (500)
T ss_pred CCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHH----HhcCCeEeee
Confidence 11112267777888889999999887765554443 1233455555
No 368
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.48 E-value=0.018 Score=51.15 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|.|+.|.|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998753
No 369
>PRK00625 shikimate kinase; Provisional
Probab=96.48 E-value=0.0027 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 370
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.47 E-value=0.012 Score=56.31 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=51.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-------CCCCCCHHH-
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-------VNVIPHIDL- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~- 151 (381)
.++-++|.|.+|+|||+|+.+++.....++..++.+..+.+. .....++...+...-... ....+...+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 678899999999999999999998776443334434333322 333444444443321110 011111111
Q ss_pred --------HHHHh---CCCeEEEEEeCCCC
Q 040862 152 --------NFRRL---SRRKVLIVLDDVTC 170 (381)
Q Consensus 152 --------l~~~l---~~~~~LlvlDdv~~ 170 (381)
+.+++ .++++||++|++..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 23333 37999999999944
No 371
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.46 E-value=0.017 Score=51.55 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=60.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC-----CCCCC---HHHH
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV-----NVIPH---IDLN 152 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~~~l 152 (381)
...++|.|++|.|||||++.++..+... ...+++. ...... .....++.... ..+.... ..... ...+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~~-~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVGI-VDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEeec-chhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 3688999999999999999999876543 2233332 111110 11112222211 1111110 00011 1113
Q ss_pred HHHhC-CCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEeccc
Q 040862 153 FRRLS-RRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNK 197 (381)
Q Consensus 153 ~~~l~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~ 197 (381)
...+. ..|-++++|++...+.+..+...+. .+..+|+||...
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~ 229 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGR 229 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechh
Confidence 33333 5788999999988777777766653 467788888753
No 372
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.46 E-value=0.015 Score=55.45 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-------CCCCCCHHH-
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-------VNVIPHIDL- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~- 151 (381)
.++-++|.|.+|+|||+|+.+++.....+...++.+..+.+. .....++...+...-... ....+...+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER---~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC---chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999998765544444444433322 333445555543221110 011111111
Q ss_pred --------HHHHh---CCCeEEEEEeCCCC
Q 040862 152 --------NFRRL---SRRKVLIVLDDVTC 170 (381)
Q Consensus 152 --------l~~~l---~~~~~LlvlDdv~~ 170 (381)
+.+++ +++++||++|++..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 33333 56899999999954
No 373
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.45 E-value=0.0022 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 374
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.45 E-value=0.013 Score=55.92 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-------CCCCCCHHH-
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-------VNVIPHIDL- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~- 151 (381)
.++-++|.|.+|+|||+|+..++.....+...++.+..+.+. .....++...+...-... ....+...+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999988766544444444433322 333444555444321110 011111111
Q ss_pred --------HHHHh---CCCeEEEEEeCCCC
Q 040862 152 --------NFRRL---SRRKVLIVLDDVTC 170 (381)
Q Consensus 152 --------l~~~l---~~~~~LlvlDdv~~ 170 (381)
+.+++ +++++||++|++..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 33333 67999999999944
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.44 E-value=0.0049 Score=54.94 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|.|+||+|||+++.+++.....+-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6889999999999999999999876544434455554
No 376
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0041 Score=50.68 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
++.++.++|.+|.||||+|..+.+.+....- .+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~-~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY-HVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC-eEEEe
Confidence 5679999999999999999999998876633 34443
No 377
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.44 E-value=0.024 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++-|+|++|+|||+++.+++....
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 578999999999999999999987643
No 378
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0049 Score=50.36 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
+..+++|.|+.|.|||||++.++..... ....+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~ 58 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILI 58 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEE
Confidence 5789999999999999999999876543 2333443
No 379
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.43 E-value=0.0079 Score=52.43 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 116 (381)
...++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 68899999999999999999988765444 34455554
No 380
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.04 Score=45.57 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
....+.|.|+.|+|||||.+.++--++..
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCC
Confidence 67899999999999999999998865544
No 381
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.42 E-value=0.0047 Score=49.39 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.8
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+++.|+|+.|+|||||++.+++.+.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 478999999999999999999988754
No 382
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.42 E-value=0.01 Score=55.68 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+..+.|.|+||+|||+|.+.+.+.++..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 67899999999999999999999887664
No 383
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.41 E-value=0.033 Score=49.09 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|.|||||++.++..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 384
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0035 Score=53.33 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+|+|.|.+|+||||+|+.++..+..+
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 4689999999999999999999988765
No 385
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.40 E-value=0.0045 Score=56.49 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=42.5
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+|+|.++.+.+|.+.|. ..+++.+.||.|.|||||+..+.+-+++.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 589999999999999886 67899999999999999999998877655
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.40 E-value=0.078 Score=50.39 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++.++|++|+||||++..++..+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999877654
No 387
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.39 E-value=0.0033 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++++++|+||+|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998764
No 388
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.38 E-value=0.015 Score=62.22 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|.+.+.+.++++|+|.+|+||||..-+++....
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g 114 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG 114 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 334556666666789999999999999998887776543
No 389
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.37 E-value=0.0058 Score=54.53 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
..++++|+|.||+|||+++.+++.+.......++|+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6899999999999999999999998877756566654
No 390
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.37 E-value=0.019 Score=60.21 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCH
Q 040862 70 RVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHI 149 (381)
Q Consensus 70 ~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 149 (381)
+.+.+...+....+++|+|.+|+||||+...+...+... ...+....... .+...+.... ......+
T Consensus 351 Qr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~-G~~V~~~ApTG----------kAA~~L~e~t--Gi~a~TI 417 (988)
T PRK13889 351 QADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAA-GYEVRGAALSG----------IAAENLEGGS--GIASRTI 417 (988)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEecCcH----------HHHHHHhhcc--CcchhhH
Confidence 334455555556688999999999999988776654432 22233321111 1111111100 0001111
Q ss_pred HHHHHH------hCCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHHH
Q 040862 150 DLNFRR------LSRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFNR 213 (381)
Q Consensus 150 ~~l~~~------l~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~~ 213 (381)
..+... .....-+||+|++.. ...+..++.... ..+++||+.--...|++...-.....+..
T Consensus 418 ~sll~~~~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~--~~garvVLVGD~~QLpsV~aG~~f~~L~~ 487 (988)
T PRK13889 418 ASLEHGWGQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAA--DAGAKVVLVGDPQQLQAIEAGAAFRSIHE 487 (988)
T ss_pred HHHHhhhcccccccccCcEEEEECcccCCHHHHHHHHHhhh--hCCCEEEEECCHHHcCCCCCCchHHHHHH
Confidence 111100 112456999999854 345666665433 46789999888777777766666655543
No 391
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.36 E-value=0.02 Score=48.57 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....++|.|+.|.|||||++.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998754
No 392
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.36 E-value=0.0092 Score=55.25 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHHhhC-------------------CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG-------------------AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....|-..+++.|.+.+. .+-++.|+|.+|+||||+.+.+....
T Consensus 371 ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 371 LDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 345666677777777664 46789999999999999999998754
No 393
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.36 E-value=0.0058 Score=47.37 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.2
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.|.+.+.+..+|++.|.=|+||||+++.+++.+
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4455666788999999999999999999999865
No 394
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.086 Score=48.88 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+.|..+||||.|||-.|++++..-.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SG 409 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSG 409 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcC
Confidence 467899999999999999999998644
No 395
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.35 E-value=0.0062 Score=65.08 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=31.2
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.....+|.+.+.+.++++|+|++|+||||.+-.++....
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~ 107 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG 107 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC
Confidence 344566677777788999999999999999988877643
No 396
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.06 Score=55.95 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=92.5
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+-|-+..+..|+++.. .++-|+.+|++|.|||-.|++++.........+.|+..-..... ..
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l-sk 343 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL-SK 343 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh-cc
Confidence 556777888888888643 57889999999999999999999877665554544431111000 00
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCC-------hh------hHHHHHhccCCCCCCCeEEE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTC-------FN------QIESLVGSLDRLLPESRILI 192 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~-------~~------~~~~l~~~~~~~~~~~~ili 192 (381)
.+ .....++.. +..+-+.++.++.+|.++. .+ ....++..+......+.|++
T Consensus 344 wv--------------gEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvv 409 (1080)
T KOG0732|consen 344 WV--------------GEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVV 409 (1080)
T ss_pred cc--------------CcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEE
Confidence 00 111112222 2334456899999999962 11 13334444443334444444
Q ss_pred Ee---cccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 193 TT---RNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 193 Ts---r~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
.. |.+. --+|..-+++.-+...-...-. ++....+...+++.+-|..-|-
T Consensus 410 igATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-~~i~~~l~~~la~~t~gy~gaD 477 (1080)
T KOG0732|consen 410 IGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-PPISRELLLWLAEETSGYGGAD 477 (1080)
T ss_pred EcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-CCCCHHHHHHHHHhccccchHH
Confidence 32 2222 2234444444433332212222 3344678888999998887665
No 397
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.34 E-value=0.005 Score=52.48 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+++|+|++|+||||||+.+...+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999999999999876543
No 398
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0032 Score=51.17 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHH
Q 040862 83 LLGIWGIGGIGKTTIARVIF 102 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~ 102 (381)
.++|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 399
>PRK13947 shikimate kinase; Provisional
Probab=96.34 E-value=0.0035 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.|+|.|++|+||||+++.+++.+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 400
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.34 E-value=0.0047 Score=55.33 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
...+-+.++|++|+|||++++.+...+..
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCc
Confidence 37888999999999999999998876543
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.33 E-value=0.0071 Score=52.82 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
....+.|.|++|+|||+|+.+++......-..++|+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 6889999999999999999998765444434455554
No 402
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.33 E-value=0.012 Score=51.87 Aligned_cols=52 Identities=25% Similarity=0.251 Sum_probs=35.0
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
..+.++.|.|++|+|||+++.+++.....+ -..++|+. + ......+...+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s-~------E~~~~~~~~r~~~ 63 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS-L------EMSKEQLLQRLLA 63 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe-C------CCCHHHHHHHHHH
Confidence 367899999999999999999998876554 23344443 3 2334455555543
No 403
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.32 E-value=0.0033 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 404
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.062 Score=55.26 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=61.9
Q ss_pred CcccchhhHHHHHHHhhC----------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHH
Q 040862 62 NELVGVESRVEEIESLLG----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASL 131 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 131 (381)
...+|.+..+..+.+.+. ....+.+.||.|+|||.||++++..+-...+..+-+. . .+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-m----------se~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-M----------SEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-h----------hhh
Confidence 467788888888777765 2446788999999999999999987755444333332 2 112
Q ss_pred HHHHHHHHhccC---CCCCCHHHHHHHhCCCe-EEEEEeCCCCh
Q 040862 132 QQKLLSEVLKDV---NVIPHIDLNFRRLSRRK-VLIVLDDVTCF 171 (381)
Q Consensus 132 ~~~l~~~~~~~~---~~~~~~~~l~~~l~~~~-~LlvlDdv~~~ 171 (381)
.. ...+.+.. -.....+.+-..++.+| .+|+||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 21 22222221 22334556777887655 57888999643
No 405
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.31 E-value=0.017 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|.|+.|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999998875
No 406
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0032 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.|.|+||+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 407
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.31 E-value=0.0034 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++++|.|++|+|||||++.++...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 3679999999999999999998854
No 408
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.0063 Score=62.28 Aligned_cols=126 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-C---
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-V--- 143 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~--- 143 (381)
.....+|.+.+...++++|.|++|.||||-.-+++.+..-.....+-+...+.. ....++..+...++.. .
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRl-----AArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRL-----AARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHH-----HHHHHHHHHHHHhCCCcCcee
Confidence 345667777777899999999999999999999887644322334444433322 2234445555555442 1
Q ss_pred -------CCCC---CH-----HHHHHHhCC-----CeEEEEEeCCCChh----hHHHHHhc-cCCCCCCCeEEEEecccc
Q 040862 144 -------NVIP---HI-----DLNFRRLSR-----RKVLIVLDDVTCFN----QIESLVGS-LDRLLPESRILITTRNKQ 198 (381)
Q Consensus 144 -------~~~~---~~-----~~l~~~l~~-----~~~LlvlDdv~~~~----~~~~l~~~-~~~~~~~~~iliTsr~~~ 198 (381)
+... .+ ..+.+.+.+ +=-.+|+|++++.. .+-.++.. +....+..+|||+|-.-.
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 0010 00 114444443 33589999996533 12222222 222234589999997643
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.31 E-value=0.003 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 410
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.30 E-value=0.019 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|.|||||++.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 411
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.03 Score=47.83 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....++|.|+.|+|||||++.++....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 678999999999999999999887543
No 412
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0036 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+.|+|-||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 5678999999999999999999653
No 413
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.29 E-value=0.021 Score=52.08 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=66.8
Q ss_pred cchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHh--hh-cccccceEEEEecccccc----CC----CChHHH
Q 040862 65 VGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFN--RI-SRNFEGSCFLENVREESQ----KP----GGLASL 131 (381)
Q Consensus 65 vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~--~~-~~~f~~~~~~~~~~~~~~----~~----~~~~~l 131 (381)
-+|..+..--.++|. ....|.+.|.+|.|||-||.+..- -+ +..|..++.....-..-. .+ .-+...
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 345555554444554 789999999999999999887543 22 233544443321111100 01 111122
Q ss_pred HHHHHHH---HhccC-CCCCCHHHH----------HHHhCC---CeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEE
Q 040862 132 QQKLLSE---VLKDV-NVIPHIDLN----------FRRLSR---RKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILI 192 (381)
Q Consensus 132 ~~~l~~~---~~~~~-~~~~~~~~l----------~~~l~~---~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ili 192 (381)
++.+... +.... .....+..+ ....++ .+.++|+|++.+.. ++..++. ..+.|++|++
T Consensus 307 mq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~GsKIVl 383 (436)
T COG1875 307 MQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEGSKIVL 383 (436)
T ss_pred HHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hccCCCEEEE
Confidence 2222222 22221 111112221 111222 45799999997643 4555443 4478999999
Q ss_pred Eecccc
Q 040862 193 TTRNKQ 198 (381)
Q Consensus 193 Tsr~~~ 198 (381)
|.-...
T Consensus 384 ~gd~aQ 389 (436)
T COG1875 384 TGDPAQ 389 (436)
T ss_pred cCCHHH
Confidence 876544
No 414
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.29 E-value=0.014 Score=50.15 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++.+++|.|++|+|||||.+.+.-.+
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccC
Confidence 68899999999999999999987643
No 415
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.29 E-value=0.0066 Score=57.63 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHhhC------------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG------------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~------------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+...+.|...+. ....+.++|++|+|||+||+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 568999998888865541 1357899999999999999999976643
No 416
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.29 E-value=0.015 Score=52.77 Aligned_cols=49 Identities=31% Similarity=0.356 Sum_probs=38.6
Q ss_pred CcccchhhHHHH---HHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 62 NELVGVESRVEE---IESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 62 ~~~vGR~~~l~~---l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
+.|||..+..+. +.++.. .++.|.+.||+|.|||+||..+++.+...-+
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 678998765554 333333 6889999999999999999999999887644
No 417
>PRK06217 hypothetical protein; Validated
Probab=96.27 E-value=0.0034 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.6
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.|+|.|.+|+||||+|+++...+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 418
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.27 E-value=0.0031 Score=54.65 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.8
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+++|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998775
No 419
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.27 E-value=0.004 Score=52.87 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++.|.|.+|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999874
No 420
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.031 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998753
No 421
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.26 E-value=0.0033 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999875
No 422
>PRK14527 adenylate kinase; Provisional
Probab=96.26 E-value=0.0043 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+||||+|+.++.++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 423
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.26 E-value=0.024 Score=57.98 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc-cceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHH----
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF-EGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFR---- 154 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~---- 154 (381)
..+++.|+|.||+||||+++.++..+...- ...+++...... ....+....+.. ...+..+..
T Consensus 337 ~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~---------AA~~L~e~~g~~---a~Tih~lL~~~~~ 404 (720)
T TIGR01448 337 QHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGR---------AAKRLGEVTGLT---ASTIHRLLGYGPD 404 (720)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchH---------HHHHHHHhcCCc---cccHHHHhhccCC
Confidence 467999999999999999999988665432 123444322110 011111111100 000111100
Q ss_pred -----Hh--CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHH
Q 040862 155 -----RL--SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHAL 208 (381)
Q Consensus 155 -----~l--~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~ 208 (381)
.. ....-+||+|++... ..+..++..+ .+++++|+.--...+++...-...
T Consensus 405 ~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~~QLpsV~~G~v~ 464 (720)
T TIGR01448 405 TFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDTDQLPSVGPGQVL 464 (720)
T ss_pred ccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECccccccCCCCCchH
Confidence 00 123469999998654 3455666554 367899998887777777665443
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.25 E-value=0.0041 Score=53.85 Aligned_cols=24 Identities=21% Similarity=-0.004 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..++++|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 425
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.25 E-value=0.0041 Score=53.30 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467999999999999999999998653
No 426
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.24 E-value=0.0081 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.5
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+.++.|.|++|+||||+|+.+...+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999987653
No 427
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.24 E-value=0.0069 Score=46.81 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=32.0
Q ss_pred CcccchhhHHHHHHHhh----C-----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLL----G-----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l----~-----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|..-..+.+.+.+ . ++-++.++|++|+|||.+++.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35666665555554444 3 45577899999999999999999863
No 428
>PRK14530 adenylate kinase; Provisional
Probab=96.24 E-value=0.0044 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.++|.|++|+||||+++.++..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998875
No 429
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.23 E-value=0.012 Score=57.16 Aligned_cols=29 Identities=34% Similarity=0.180 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...-.+|+|++|+|||+|+..+++.+...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n 443 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTN 443 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 67888999999999999999999876543
No 430
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.22 E-value=0.014 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++..++|+|++|.|||||++-+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999998755
No 431
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.21 E-value=0.0035 Score=53.51 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCC------CCHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVI------PHIDLNF 153 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~~~~~l~ 153 (381)
.+.++.+.|++|.||||++..+...+. ...++..+....-.....+..+.. ......... .-.+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~~p~~~~~~~----~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQFHPDYDELLK----ADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGGSTTHHHHHH----HHCCCTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHhccchhhhhh----hhhhhhHHHHHHHHHHHHHHHH
Confidence 577889999999999999999987764 223333334333222223333222 100000000 0011133
Q ss_pred HHhCCCeEEEEEeCCC-ChhhHHHHHhccCCCCCCCeEE
Q 040862 154 RRLSRRKVLIVLDDVT-CFNQIESLVGSLDRLLPESRIL 191 (381)
Q Consensus 154 ~~l~~~~~LlvlDdv~-~~~~~~~l~~~~~~~~~~~~il 191 (381)
.....++.=+|+|..- +......+...+...+....|+
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEE
Confidence 3444566678889874 4455554555555434444333
No 432
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.21 E-value=0.005 Score=51.85 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
.+.++|+||+|+|||||+..++......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 578999999999999999999887644444
No 433
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.21 E-value=0.0033 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.9
Q ss_pred EEEecCCCCchhHHHHHHHhhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++|.|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 434
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.23 Score=49.87 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=35.3
Q ss_pred ccchhhHHHHHHHhhC-----------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 64 LVGVESRVEEIESLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
-.+++..+..+.+.+. ...++.++|++|+||||+.+.++..+.-+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 3566666667777766 24578899999999999999999887655
No 435
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.20 E-value=0.01 Score=52.67 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
+..+++|+|+||+|||||...+..++..+-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 6779999999999999999999998766533
No 436
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.20 E-value=0.0048 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=22.6
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+|+++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999877543
No 437
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.20 E-value=0.016 Score=55.09 Aligned_cols=25 Identities=44% Similarity=0.680 Sum_probs=22.5
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHh
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..+..++|.||+|.|||||++.+.-
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHc
Confidence 3788999999999999999999865
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.18 E-value=0.0078 Score=51.43 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=29.3
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVRE 120 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 120 (381)
.++|+|-||+||||++..++.++..+-...+.+++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 57899999999999999977776665445666665544
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.18 E-value=0.0071 Score=49.95 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++++|+|++|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35689999999999999999999887653
No 440
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.18 E-value=0.012 Score=58.24 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 61 QNELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 61 ~~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
++..+.|.+..+.|.+... .+.+++|+|++|+||||+|+.++..+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3677888888888888776 5668999999999999999999998764
No 441
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.17 E-value=0.0049 Score=46.44 Aligned_cols=23 Identities=35% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIF 102 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~ 102 (381)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999986
No 442
>PRK13949 shikimate kinase; Provisional
Probab=96.17 E-value=0.0051 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++|.|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 443
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.064 Score=52.63 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=54.3
Q ss_pred cccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 63 ELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
.+-|-...+..+..... .++-+.++|++|+|||-++++++++.. ..++..+..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~p-------- 252 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGP-------- 252 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccH--------
Confidence 45566666777666543 578889999999999999999998754 233333222
Q ss_pred hHHHHHHHHHHHhccCCCCCCHH-HHHHHhCCC-eEEEEEeCCC
Q 040862 128 LASLQQKLLSEVLKDVNVIPHID-LNFRRLSRR-KVLIVLDDVT 169 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~-~l~~~l~~~-~~LlvlDdv~ 169 (381)
++.+...++ ....+. .+......+ |.++.+|+++
T Consensus 253 ------eli~k~~gE--te~~LR~~f~~a~k~~~psii~IdEld 288 (693)
T KOG0730|consen 253 ------ELISKFPGE--TESNLRKAFAEALKFQVPSIIFIDELD 288 (693)
T ss_pred ------HHHHhcccc--hHHHHHHHHHHHhccCCCeeEeHHhHh
Confidence 122222221 111122 245555666 9999999984
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.16 E-value=0.007 Score=54.24 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.++++++|++|+||||++..++..+...- ..+.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 467899999999999999999998776543 344444
No 445
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.05 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+.+|-||.|.|||||+..++-.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998763
No 446
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.0066 Score=52.22 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|+|++|+|||||++.++--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 7889999999999999999999864
No 447
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.15 E-value=0.052 Score=50.10 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=50.7
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecccccc-CCCChHHHHHHHHHHHhccCC-CCCCHHHHHHHh
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQ-KPGGLASLQQKLLSEVLKDVN-VIPHIDLNFRRL 156 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~-~~~~~~~l~~~l 156 (381)
...+.++|+|++|+||||++..++..+..+ ..++.+-+..+... ...+... +...-..... ...-.+.+...+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~----~~~~~~~~~~~~~~~~~ll~~~L 232 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVH----LLASKGGQGRAKVTTQDLIEACL 232 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEE----EEecCCCCCcCcCcHHHHHHHHh
Confidence 378899999999999999999998876543 11222211111100 0000000 0000000011 111123366777
Q ss_pred CCCeEEEEEeCCCChhhHHH
Q 040862 157 SRRKVLIVLDDVTCFNQIES 176 (381)
Q Consensus 157 ~~~~~LlvlDdv~~~~~~~~ 176 (381)
+..+=.+|++.+.+.+.+..
T Consensus 233 R~~PD~IivGEiR~~ea~~~ 252 (332)
T PRK13900 233 RLRPDRIIVGELRGAEAFSF 252 (332)
T ss_pred ccCCCeEEEEecCCHHHHHH
Confidence 88888999999988776654
No 448
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.002 Score=54.33 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+++|.||+|+|||||.+.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 688999999999999999998754
No 449
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.13 E-value=0.019 Score=55.16 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
.++-++|.|.+|+|||+|+.+++..+....+.++.+....+. .....++...+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGER---grEv~efi~~~~~ 214 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKE 214 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccC---chHHHHHHHHHHh
Confidence 678899999999999999999988744332334444433322 3334455555443
No 450
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.13 E-value=0.0046 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++|.|++|+|||||++.++....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999977543
No 451
>PRK04328 hypothetical protein; Provisional
Probab=96.12 E-value=0.0097 Score=52.69 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5889999999999999999998876444434455554
No 452
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.11 E-value=0.005 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEecCCCCchhHHHHHHHhhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 453
>PRK05439 pantothenate kinase; Provisional
Probab=96.10 E-value=0.013 Score=53.14 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+-+|+|.|++|+||||+|..+...+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999886644
No 454
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.034 Score=48.00 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...-..|.|+.|.|||||++-+...
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcc
Confidence 5567789999999999999988753
No 455
>PRK06761 hypothetical protein; Provisional
Probab=96.10 E-value=0.0082 Score=53.72 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+++.|.|++|+||||+++.+++.+...
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 4689999999999999999999987654
No 456
>PRK13975 thymidylate kinase; Provisional
Probab=96.09 E-value=0.0055 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+++|.|+.|+||||+++.+++.+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 358999999999999999999998764
No 457
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.08 E-value=0.033 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|.|+.|.|||||++.++...
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 78899999999999999999998754
No 458
>PRK13948 shikimate kinase; Provisional
Probab=96.08 E-value=0.0064 Score=50.90 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+..++|.|++|+||||+++.++..+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 468899999999999999999998764
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.07 E-value=0.0099 Score=58.02 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 71 VEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 71 l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+..|.+.|. ...++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555555 6889999999999999999999997755544445543
No 460
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.07 E-value=0.0087 Score=55.11 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=36.7
Q ss_pred CcccchhhHHHHHHH-hhC-CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIES-LLG-AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~-~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|.+..++.+.- .+. +..-+.+.|++|+|||++|+.++.-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 678999999888775 443 54679999999999999999998755
No 461
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.07 E-value=0.027 Score=53.70 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc-------CCCCCCHHH-
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-------VNVIPHIDL- 151 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~- 151 (381)
.++-++|.|.+|+|||+|+.+++....+....++.+..+... .....++...+...-... ....+...+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 678899999999999999999988764322223333333322 333444554443321110 111111111
Q ss_pred --------HHHHh---CCCeEEEEEeCCCC
Q 040862 152 --------NFRRL---SRRKVLIVLDDVTC 170 (381)
Q Consensus 152 --------l~~~l---~~~~~LlvlDdv~~ 170 (381)
+.+++ +++++||++||+..
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 33333 46899999999944
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.06 E-value=0.0054 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.++.++|+|++|+|||||+..+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5788999999999999999998754
No 463
>PRK13764 ATPase; Provisional
Probab=96.06 E-value=0.041 Score=54.52 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=48.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceE-EEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHH-HHHHhC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSC-FLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDL-NFRRLS 157 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~ 157 (381)
..+.+.|+|++|+||||+++.++..+..+ ...+ .+-+..+... ... ..+. ......... ....|.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~~-~~~--------i~q~---~~~~~~~~~~~~~lLR 322 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQV-PPE--------ITQY---SKLEGSMEETADILLL 322 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCccccC-CCc--------ceEE---eeccccHHHHHHHHHh
Confidence 56779999999999999999999876543 2233 2221111110 000 0000 000011111 222356
Q ss_pred CCeEEEEEeCCCChhhHHHH
Q 040862 158 RRKVLIVLDDVTCFNQIESL 177 (381)
Q Consensus 158 ~~~~LlvlDdv~~~~~~~~l 177 (381)
..|=.+++|++.+.+.++.+
T Consensus 323 ~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hCCCEEEECCCCCHHHHHHH
Confidence 67889999999988887765
No 464
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.0057 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+|+|.|++|+|||||.+.++-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999999986
No 465
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.05 E-value=0.0057 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEecCCCCchhHHHHHHHhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~ 104 (381)
|+|.|.+|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 466
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.05 E-value=0.019 Score=54.47 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|.|++|+|||||+..++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC
Confidence 67899999999999999999998643
No 467
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.04 E-value=0.015 Score=53.52 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=25.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...+|+|.|++|+|||||+..+...+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57799999999999999999998877654
No 468
>PRK15453 phosphoribulokinase; Provisional
Probab=96.04 E-value=0.0095 Score=52.93 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
...+|+|.|.+|+||||+++.+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 469
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.03 E-value=0.026 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...++-|+|++|+|||+|+.+++-.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHH
Confidence 5678889999999999999998753
No 470
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.03 E-value=0.016 Score=47.28 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=31.0
Q ss_pred cchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 65 VGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 65 vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.|.+..++.+.+.+. ....+++.|++|+|||||...+...
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 567777777777653 2446779999999999999999763
No 471
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.03 E-value=0.055 Score=57.24 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHH-H
Q 040862 75 ESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLN-F 153 (381)
Q Consensus 75 ~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l-~ 153 (381)
.......++++|.|.+|+||||+++.+..-.... ...+...... ..-...+-...+.. ...+..+ .
T Consensus 391 ~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g~ApT---------gkAA~~L~e~~Gi~---a~TIas~ll 457 (1102)
T PRK13826 391 EHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVGGALA---------GKAAEGLEKEAGIQ---SRTLSSWEL 457 (1102)
T ss_pred HHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCc---------HHHHHHHHHhhCCC---eeeHHHHHh
Confidence 3333467899999999999999999988755433 1122222111 01111111111111 1112221 1
Q ss_pred HH-----hCCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHHHH
Q 040862 154 RR-----LSRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELFNR 213 (381)
Q Consensus 154 ~~-----l~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~~~ 213 (381)
.. .-..+-+||+|+... ...+..++.... ..+++||+..-...|++...-.....+..
T Consensus 458 ~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~--~~garvVLVGD~~QL~~V~aG~~f~~l~~ 522 (1102)
T PRK13826 458 RWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVT--RAGAKLVLVGDPEQLQPIEAGAAFRAIAD 522 (1102)
T ss_pred hhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECCHHHcCCCCCCcHHHHHHh
Confidence 11 013467999999853 445666666543 35789999887777777777666665554
No 472
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.02 E-value=0.03 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...++-|+|++|+|||+|+.+++-.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHH
Confidence 5778899999999999999998753
No 473
>PRK13946 shikimate kinase; Provisional
Probab=96.02 E-value=0.0068 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.|++.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998873
No 474
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.006 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|+=|+||||||..+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 475
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.00 E-value=0.076 Score=52.95 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=32.3
Q ss_pred EEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHH
Q 040862 162 LIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELF 211 (381)
Q Consensus 162 LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~ 211 (381)
+||+|++... ..+..++..+ .+++++|+.--...|++...-....=+
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~~QLpsV~~G~vl~dl 310 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDKNQLPSVEAGAVLGDL 310 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhc---CCCCEEEEECChhhCCCCCCChhHHHH
Confidence 8999998543 4556666654 367899998888877777655444333
No 476
>PLN02200 adenylate kinase family protein
Probab=96.00 E-value=0.0063 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++|.|+||+||||+|..++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999998764
No 477
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.00 E-value=0.04 Score=48.96 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+-++|.|.+|+|||+|+..++++.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~ 93 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQA 93 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhh
Confidence 57888999999999999999988764
No 478
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.99 E-value=0.0088 Score=49.68 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=30.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
..+.|-|++|+|||+|..+.++.++++|...+.--
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 58899999999999999999999998887655543
No 479
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.99 E-value=0.0082 Score=40.18 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.7
Q ss_pred cEEEEecCCCCchhHHHHHHHhhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..|+|+.|+|||||..++..-+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999876543
No 480
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.98 E-value=0.0033 Score=52.98 Aligned_cols=21 Identities=29% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
++.|+|+.|.||||+++.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999873
No 481
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.98 E-value=0.0073 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45789999999999999999998753
No 482
>PRK14531 adenylate kinase; Provisional
Probab=95.96 E-value=0.007 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.++|.|+||+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998875
No 483
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.96 E-value=0.026 Score=58.10 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|+|++|+|||||++-++..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 7889999999999999999998764
No 484
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.16 Score=47.14 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHhhccCCCC-ChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 199 MKGFGDDHALELFNRHAFRQNLV-DVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 199 l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+++++.+|+.+++.......-.. ....++..+++.-...|||-.++.++..+
T Consensus 408 v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 408 VENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 67889999999876554221111 11114567788888999997777666554
No 485
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.013 Score=47.55 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEe
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLEN 117 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 117 (381)
.+..|+++|++|+|||||.+.+|..+.-+ ...+|+..
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~~d-~G~I~v~H 72 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYLPD-EGQILVRH 72 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhccCCC-CceEEEEe
Confidence 57789999999999999999999876554 34566543
No 486
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.94 E-value=0.008 Score=52.71 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=23.6
Q ss_pred EecCCCCchhHHHHHHHhhhcccccceEEEEecccc
Q 040862 86 IWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREE 121 (381)
Q Consensus 86 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 121 (381)
|.||+|+||||+++.+.+.+... ...+.++++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~-~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN-GRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc-cCCceEEEcchH
Confidence 68999999999999999876554 234555566544
No 487
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.94 E-value=0.14 Score=49.50 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=35.5
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|....++.+...+. ....+.|+|.+|+||+++|+.+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 468998888888777665 45567799999999999999997643
No 488
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.93 E-value=0.0094 Score=54.38 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
..+++.|+|++|+||||||.+++......-..++|+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yI 89 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFI 89 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 678999999999999999999888765553444454
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.93 E-value=0.01 Score=54.39 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35799999999999999999999887654
No 490
>PRK14529 adenylate kinase; Provisional
Probab=95.93 E-value=0.042 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEecCCCCchhHHHHHHHhhhc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++|.|++|+||||+++.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998764
No 491
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.93 E-value=0.012 Score=51.51 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
....+.|.|++|+|||||+.+++....++-...+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5779999999999999999888776533323344443
No 492
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.92 E-value=0.0056 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=17.7
Q ss_pred EEEecCCCCchhHHHHHHHhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~ 104 (381)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 493
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.92 E-value=0.008 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+.+++|.|++|+|||||++.++..+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46889999999999999999998654
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.91 E-value=0.014 Score=50.88 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...++.|.|++|+|||+++.+++....++-..++|+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~ 50 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYI 50 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 578999999999999999999988654443334444
No 495
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.90 E-value=0.0096 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.2
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++.|+|+.|+|||||+..++..++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987655
No 496
>PRK14532 adenylate kinase; Provisional
Probab=95.90 E-value=0.0065 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEecCCCCchhHHHHHHHhhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++|.|+||+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998754
No 497
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.90 E-value=0.0073 Score=47.96 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|+|+.|+|||||++.++...
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 57899999999999999999988754
No 498
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.90 E-value=0.082 Score=52.90 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc---cceEEEEeccccccCCCChHHHHHHHHHHHhccC-------CCCCCH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF---EGSCFLENVREESQKPGGLASLQQKLLSEVLKDV-------NVIPHI 149 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~~ 149 (381)
..++++|+|.||+||||++..++..+.+.. ...+.+.... ......+...+......-. ......
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APT-----gkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a 240 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPT-----GKAAARLTESLGKALRQLPLTDEQKKRIPEEA 240 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCc-----HHHHHHHHHHHHhhhhccccchhhhhcCCCch
Confidence 578999999999999999999887654321 1234333211 1111222222211110000 000011
Q ss_pred HHHHHHhC------------CCe---EEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHH
Q 040862 150 DLNFRRLS------------RRK---VLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHA 207 (381)
Q Consensus 150 ~~l~~~l~------------~~~---~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea 207 (381)
..+.+.+. +.+ -++|+|++.. ......++..++ +++++|+-.-...+++...-..
T Consensus 241 ~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL~sV~~G~V 312 (615)
T PRK10875 241 STLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQLASVEAGAV 312 (615)
T ss_pred HHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhcCCCCCCch
Confidence 11222221 111 3899999854 344566666543 6789999888777666555433
No 499
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.89 E-value=0.022 Score=58.63 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.++|+||.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 479999999999999999998764
No 500
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.008 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++++|+|.||+||||+...+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999999988766
Done!