Query 040862
Match_columns 381
No_of_seqs 245 out of 2517
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.8E-39 2.7E-43 314.5 23.4 281 65-357 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-36 1.1E-40 323.3 24.5 287 57-356 119-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 4.5E-35 1.5E-39 291.2 23.2 281 56-352 118-448 (591)
4 1vt4_I APAF-1 related killer D 100.0 6.1E-34 2.1E-38 286.0 20.7 280 63-373 129-456 (1221)
5 2qen_A Walker-type ATPase; unk 99.8 8.5E-20 2.9E-24 169.1 18.7 275 58-350 8-349 (350)
6 2fna_A Conserved hypothetical 99.8 2.6E-19 8.9E-24 166.2 19.4 275 60-349 11-356 (357)
7 1w5s_A Origin recognition comp 99.8 2.8E-17 9.5E-22 155.7 19.0 275 60-345 20-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.7 1.4E-14 4.9E-19 135.7 22.8 257 61-334 19-339 (384)
9 1fnn_A CDC6P, cell division co 99.6 2.7E-14 9.3E-19 134.0 21.4 286 60-356 15-387 (389)
10 2qby_A CDC6 homolog 1, cell di 99.6 2.7E-14 9.2E-19 133.7 18.6 264 60-334 18-348 (386)
11 2v1u_A Cell division control p 99.6 3.2E-13 1.1E-17 126.4 23.8 260 60-333 17-350 (387)
12 1njg_A DNA polymerase III subu 99.5 1E-12 3.4E-17 114.7 17.1 177 62-250 23-231 (250)
13 2chg_A Replication factor C sm 99.4 3.2E-12 1.1E-16 109.9 16.2 170 62-248 17-205 (226)
14 1sxj_B Activator 1 37 kDa subu 99.3 4.8E-11 1.6E-15 108.8 16.4 165 62-243 21-205 (323)
15 3jrn_A AT1G72930 protein; TIR 99.3 1.4E-12 4.7E-17 106.2 5.4 59 2-60 93-152 (176)
16 1hqc_A RUVB; extended AAA-ATPa 99.3 2.7E-10 9.2E-15 104.0 20.6 238 62-339 12-303 (324)
17 3ozi_A L6TR; plant TIR domain, 99.3 1.5E-12 5E-17 107.8 3.9 59 3-61 122-181 (204)
18 1iqp_A RFCS; clamp loader, ext 99.2 8.5E-11 2.9E-15 107.3 13.7 170 62-248 25-213 (327)
19 2chq_A Replication factor C sm 99.2 8.3E-10 2.8E-14 100.3 16.0 169 62-247 17-204 (319)
20 1jr3_A DNA polymerase III subu 99.1 5.7E-10 1.9E-14 103.8 14.9 175 62-248 16-222 (373)
21 3pfi_A Holliday junction ATP-d 99.1 5.8E-09 2E-13 95.7 17.6 242 62-341 29-320 (338)
22 3te6_A Regulatory protein SIR3 99.0 9.4E-09 3.2E-13 92.5 17.4 151 62-216 20-212 (318)
23 1sxj_D Activator 1 41 kDa subu 99.0 7.3E-09 2.5E-13 95.5 16.0 177 62-246 37-234 (353)
24 3h4m_A Proteasome-activating n 99.0 8E-09 2.8E-13 92.3 15.8 163 62-247 17-231 (285)
25 1sxj_A Activator 1 95 kDa subu 99.0 1.7E-08 6E-13 97.9 18.0 172 62-246 39-251 (516)
26 3bos_A Putative DNA replicatio 99.0 3E-09 1E-13 92.4 10.6 159 62-248 28-218 (242)
27 1jbk_A CLPB protein; beta barr 98.9 3.8E-09 1.3E-13 88.2 9.5 46 62-107 22-69 (195)
28 3eie_A Vacuolar protein sortin 98.9 8.8E-08 3E-12 87.2 17.7 165 62-248 18-229 (322)
29 2qz4_A Paraplegin; AAA+, SPG7, 98.9 1.3E-07 4.5E-12 83.2 18.0 166 62-247 6-222 (262)
30 1sxj_E Activator 1 40 kDa subu 98.9 4.6E-08 1.6E-12 90.2 15.6 182 62-248 14-238 (354)
31 1xwi_A SKD1 protein; VPS4B, AA 98.9 3.1E-07 1E-11 83.5 20.3 166 62-248 12-224 (322)
32 2qp9_X Vacuolar protein sortin 98.8 1.7E-07 5.7E-12 86.5 18.5 165 62-248 51-262 (355)
33 3d8b_A Fidgetin-like protein 1 98.8 1.6E-07 5.4E-12 86.8 18.2 166 62-249 84-297 (357)
34 3pvs_A Replication-associated 98.8 5E-08 1.7E-12 92.5 15.1 162 62-247 26-215 (447)
35 3uk6_A RUVB-like 2; hexameric 98.8 7.1E-08 2.4E-12 89.4 15.8 182 62-248 44-304 (368)
36 3b9p_A CG5977-PA, isoform A; A 98.8 2.4E-07 8.3E-12 83.2 18.0 165 62-248 21-234 (297)
37 3vfd_A Spastin; ATPase, microt 98.8 2.3E-07 7.8E-12 86.8 18.3 164 62-247 115-326 (389)
38 2z4s_A Chromosomal replication 98.8 6.2E-08 2.1E-12 91.9 13.8 170 62-248 105-307 (440)
39 3syl_A Protein CBBX; photosynt 98.8 1.2E-07 4E-12 85.8 14.6 136 63-217 32-219 (309)
40 3u61_B DNA polymerase accessor 98.8 1.9E-07 6.6E-12 85.0 15.9 161 62-244 26-213 (324)
41 1in4_A RUVB, holliday junction 98.8 8.4E-08 2.9E-12 87.8 13.2 244 62-343 25-319 (334)
42 2zan_A Vacuolar protein sortin 98.8 5.3E-07 1.8E-11 85.7 19.0 166 62-248 134-346 (444)
43 2p65_A Hypothetical protein PF 98.7 4.3E-08 1.5E-12 81.3 9.6 46 62-107 22-69 (187)
44 4b4t_J 26S protease regulatory 98.7 3.9E-07 1.3E-11 84.1 16.2 156 62-240 148-354 (405)
45 1d2n_A N-ethylmaleimide-sensit 98.7 5.2E-07 1.8E-11 79.9 16.2 45 62-106 33-89 (272)
46 3n70_A Transport activator; si 98.7 9.6E-08 3.3E-12 76.2 9.0 109 63-197 2-116 (145)
47 4b4t_L 26S protease subunit RP 98.6 9.1E-07 3.1E-11 82.9 16.8 156 62-240 181-387 (437)
48 1sxj_C Activator 1 40 kDa subu 98.6 9.1E-07 3.1E-11 81.1 15.2 165 62-243 25-208 (340)
49 1l8q_A Chromosomal replication 98.6 1.3E-06 4.6E-11 79.4 16.0 164 62-246 11-207 (324)
50 4b4t_M 26S protease regulatory 98.6 1E-06 3.4E-11 82.6 15.2 156 62-240 181-387 (434)
51 1a5t_A Delta prime, HOLB; zinc 98.6 2.2E-06 7.6E-11 78.2 16.6 162 68-246 8-204 (334)
52 4b4t_I 26S protease regulatory 98.6 9.8E-07 3.3E-11 81.8 14.0 156 62-240 182-388 (437)
53 4b4t_K 26S protease regulatory 98.5 9.2E-07 3.2E-11 82.8 13.8 46 62-107 172-232 (428)
54 4b4t_H 26S protease regulatory 98.5 2.2E-06 7.4E-11 80.3 16.2 156 62-240 209-415 (467)
55 3pxg_A Negative regulator of g 98.5 7.7E-07 2.6E-11 85.1 13.5 131 62-215 180-338 (468)
56 3cf0_A Transitional endoplasmi 98.5 1E-06 3.4E-11 79.3 11.7 158 62-242 15-223 (301)
57 1lv7_A FTSH; alpha/beta domain 98.5 1.6E-06 5.6E-11 76.0 12.8 45 62-106 12-70 (257)
58 1ofh_A ATP-dependent HSL prote 98.5 1.2E-06 4.1E-11 78.9 12.2 45 62-106 15-75 (310)
59 1qvr_A CLPB protein; coiled co 98.5 5.5E-07 1.9E-11 92.6 10.8 45 62-106 170-216 (854)
60 3ec2_A DNA replication protein 98.4 7.3E-07 2.5E-11 73.7 8.7 112 67-197 19-143 (180)
61 3hu3_A Transitional endoplasmi 98.4 3.1E-06 1.1E-10 81.1 13.1 163 62-246 204-414 (489)
62 1r6b_X CLPA protein; AAA+, N-t 98.4 5.7E-06 2E-10 84.1 15.3 136 62-215 186-362 (758)
63 3pxi_A Negative regulator of g 98.3 4.2E-06 1.4E-10 85.0 13.3 131 62-215 180-338 (758)
64 2ce7_A Cell division protein F 98.3 1.5E-05 5.1E-10 75.8 16.2 156 62-240 16-221 (476)
65 4fcw_A Chaperone protein CLPB; 98.3 2.5E-06 8.6E-11 76.9 9.9 46 62-107 17-73 (311)
66 3co5_A Putative two-component 98.3 4.4E-07 1.5E-11 72.1 4.3 45 62-106 4-52 (143)
67 1ojl_A Transcriptional regulat 98.3 8.8E-06 3E-10 73.2 13.1 45 62-106 2-50 (304)
68 2w58_A DNAI, primosome compone 98.2 2.8E-06 9.5E-11 71.5 8.3 54 62-115 25-88 (202)
69 2bjv_A PSP operon transcriptio 98.2 9.8E-06 3.3E-10 71.3 12.0 45 62-106 6-54 (265)
70 3cf2_A TER ATPase, transitiona 98.2 5.4E-06 1.8E-10 83.4 10.7 157 62-241 204-408 (806)
71 2r62_A Cell division protease 98.2 1.7E-06 5.9E-11 76.3 5.3 46 62-107 11-70 (268)
72 1ixz_A ATP-dependent metallopr 98.0 5.2E-05 1.8E-09 66.1 12.3 45 62-106 16-74 (254)
73 1iy2_A ATP-dependent metallopr 98.0 0.00011 3.8E-09 65.0 14.5 45 62-106 40-98 (278)
74 3m6a_A ATP-dependent protease 98.0 0.00016 5.4E-09 70.4 16.6 46 62-107 81-134 (543)
75 2kjq_A DNAA-related protein; s 98.0 5E-06 1.7E-10 66.4 5.0 28 80-107 35-62 (149)
76 3t15_A Ribulose bisphosphate c 98.0 0.00011 3.6E-09 65.7 13.9 28 80-107 35-62 (293)
77 3pxi_A Negative regulator of g 98.0 2.1E-05 7.1E-10 80.0 9.9 46 62-107 491-547 (758)
78 2dhr_A FTSH; AAA+ protein, hex 97.9 0.00016 5.6E-09 69.1 14.6 45 62-106 31-89 (499)
79 2c9o_A RUVB-like 1; hexameric 97.9 3.8E-05 1.3E-09 73.2 9.1 47 62-108 37-90 (456)
80 2x8a_A Nuclear valosin-contain 97.9 0.00032 1.1E-08 61.9 14.4 45 62-106 10-69 (274)
81 2qgz_A Helicase loader, putati 97.8 2.8E-05 9.7E-10 69.9 7.3 47 62-108 124-180 (308)
82 2gno_A DNA polymerase III, gam 97.8 0.00012 4E-09 65.7 11.2 133 66-215 1-152 (305)
83 1ypw_A Transitional endoplasmi 97.8 9.7E-05 3.3E-09 75.2 11.7 46 62-107 204-264 (806)
84 3cf2_A TER ATPase, transitiona 97.5 0.00015 5.2E-09 73.0 7.9 46 62-107 477-537 (806)
85 2orw_A Thymidine kinase; TMTK, 97.4 0.00019 6.5E-09 59.3 6.0 124 81-211 3-127 (184)
86 2cvh_A DNA repair and recombin 97.4 0.00083 2.8E-08 56.8 10.0 24 80-103 19-42 (220)
87 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00059 2E-08 69.3 10.4 44 62-105 458-512 (758)
88 2r44_A Uncharacterized protein 97.3 9.1E-05 3.1E-09 67.3 3.3 46 62-107 27-72 (331)
89 1qvr_A CLPB protein; coiled co 97.3 0.00057 1.9E-08 70.3 9.1 45 63-107 559-614 (854)
90 1g5t_A COB(I)alamin adenosyltr 97.2 0.00027 9.2E-09 58.4 4.6 117 80-198 27-164 (196)
91 3jvv_A Twitching mobility prot 97.2 0.002 6.8E-08 58.9 10.8 106 80-196 122-230 (356)
92 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00066 2.3E-08 60.6 7.0 25 80-104 122-146 (331)
93 1jr3_D DNA polymerase III, del 97.1 0.026 9.1E-07 51.1 17.1 144 80-246 17-184 (343)
94 3nbx_X ATPase RAVA; AAA+ ATPas 97.1 0.00028 9.5E-09 67.6 3.6 46 62-107 22-67 (500)
95 1qhx_A CPT, protein (chloramph 97.1 0.00036 1.2E-08 57.0 3.8 26 81-106 3-28 (178)
96 3hws_A ATP-dependent CLP prote 97.0 0.00057 1.9E-08 62.9 5.4 44 63-106 16-76 (363)
97 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 57.6 3.1 29 82-110 2-30 (186)
98 1rz3_A Hypothetical protein rb 96.9 0.001 3.5E-08 55.6 5.5 40 67-106 3-47 (201)
99 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0015 5.2E-08 61.4 6.5 37 80-116 150-186 (473)
100 1tue_A Replication protein E1; 96.8 0.00075 2.6E-08 56.1 3.7 41 67-107 41-84 (212)
101 3kb2_A SPBC2 prophage-derived 96.8 0.00074 2.5E-08 54.7 3.6 25 82-106 2-26 (173)
102 3hr8_A Protein RECA; alpha and 96.8 0.0022 7.6E-08 58.4 6.8 36 80-115 60-95 (356)
103 3trf_A Shikimate kinase, SK; a 96.8 0.00092 3.2E-08 54.9 3.8 26 81-106 5-30 (185)
104 3vaa_A Shikimate kinase, SK; s 96.7 0.00097 3.3E-08 55.7 3.9 26 80-105 24-49 (199)
105 1kgd_A CASK, peripheral plasma 96.7 0.00093 3.2E-08 54.8 3.7 26 81-106 5-30 (180)
106 1um8_A ATP-dependent CLP prote 96.7 0.0015 5.2E-08 60.3 5.5 26 81-106 72-97 (376)
107 3a00_A Guanylate kinase, GMP k 96.7 0.00097 3.3E-08 55.0 3.8 30 81-110 1-30 (186)
108 3h16_A TIR protein; bacteria T 96.7 0.00034 1.2E-08 55.9 0.9 47 2-50 104-150 (154)
109 3tau_A Guanylate kinase, GMP k 96.7 0.00099 3.4E-08 56.1 3.7 28 80-107 7-34 (208)
110 3c8u_A Fructokinase; YP_612366 96.7 0.0018 6.2E-08 54.4 5.2 27 80-106 21-47 (208)
111 1ly1_A Polynucleotide kinase; 96.7 0.00099 3.4E-08 54.3 3.3 23 81-103 2-24 (181)
112 1g8p_A Magnesium-chelatase 38 96.7 0.00083 2.8E-08 61.3 3.1 45 62-106 24-70 (350)
113 3k1j_A LON protease, ATP-depen 96.6 0.0016 5.3E-08 64.3 5.2 47 62-108 41-87 (604)
114 3ney_A 55 kDa erythrocyte memb 96.6 0.0011 3.9E-08 55.0 3.5 27 80-106 18-44 (197)
115 1kag_A SKI, shikimate kinase I 96.6 0.0011 3.8E-08 53.7 3.4 26 81-106 4-29 (173)
116 2nq2_C Hypothetical ABC transp 96.6 0.0029 1E-07 54.9 6.2 26 80-105 30-55 (253)
117 1zp6_A Hypothetical protein AT 96.6 0.001 3.5E-08 54.9 3.2 25 80-104 8-32 (191)
118 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.3E-08 54.3 3.7 27 81-107 3-29 (192)
119 2yvu_A Probable adenylyl-sulfa 96.6 0.0019 6.4E-08 53.2 4.7 28 80-107 12-39 (186)
120 2c95_A Adenylate kinase 1; tra 96.6 0.0017 5.8E-08 53.8 4.4 28 78-105 6-33 (196)
121 3iij_A Coilin-interacting nucl 96.6 0.0012 4.2E-08 54.0 3.4 26 80-105 10-35 (180)
122 2rhm_A Putative kinase; P-loop 96.6 0.0013 4.3E-08 54.4 3.5 26 80-105 4-29 (193)
123 1nks_A Adenylate kinase; therm 96.6 0.0017 5.8E-08 53.5 4.3 26 82-107 2-27 (194)
124 3ice_A Transcription terminati 96.6 0.00098 3.4E-08 60.9 3.0 30 80-109 173-202 (422)
125 2qor_A Guanylate kinase; phosp 96.6 0.0012 4.2E-08 55.2 3.4 27 80-106 11-37 (204)
126 3uie_A Adenylyl-sulfate kinase 96.6 0.0014 4.8E-08 54.7 3.6 27 80-106 24-50 (200)
127 4eun_A Thermoresistant glucoki 96.6 0.0015 5.2E-08 54.5 3.8 26 80-105 28-53 (200)
128 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.5E-08 54.9 3.4 25 81-105 18-42 (202)
129 1g41_A Heat shock protein HSLU 96.5 0.0025 8.5E-08 59.8 5.5 46 62-107 15-76 (444)
130 3io5_A Recombination and repai 96.5 0.0037 1.3E-07 55.6 6.3 26 83-108 30-55 (333)
131 3lw7_A Adenylate kinase relate 96.5 0.0013 4.3E-08 53.3 3.2 20 82-101 2-21 (179)
132 2px0_A Flagellar biosynthesis 96.5 0.016 5.5E-07 51.5 10.4 28 80-107 104-131 (296)
133 2r2a_A Uncharacterized protein 96.5 0.0058 2E-07 50.9 7.0 23 82-104 6-28 (199)
134 3tr0_A Guanylate kinase, GMP k 96.5 0.0016 5.6E-08 54.3 3.7 26 80-105 6-31 (205)
135 1gvn_B Zeta; postsegregational 96.5 0.0023 7.8E-08 56.7 4.6 26 80-105 32-57 (287)
136 2vli_A Antibiotic resistance p 96.4 0.0014 4.9E-08 53.6 2.9 26 81-106 5-30 (183)
137 1nn5_A Similar to deoxythymidy 96.4 0.0026 8.9E-08 53.5 4.6 29 80-108 8-36 (215)
138 3tlx_A Adenylate kinase 2; str 96.4 0.0029 9.9E-08 54.6 4.9 26 80-105 28-53 (243)
139 1knq_A Gluconate kinase; ALFA/ 96.4 0.002 6.8E-08 52.4 3.6 25 81-105 8-32 (175)
140 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0026 8.8E-08 57.6 4.7 107 78-196 168-274 (330)
141 1via_A Shikimate kinase; struc 96.4 0.0016 5.6E-08 52.9 3.1 25 82-106 5-29 (175)
142 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6.3E-08 53.4 3.5 25 81-105 3-27 (196)
143 2ck3_D ATP synthase subunit be 96.4 0.015 5.3E-07 54.5 10.0 29 80-108 152-180 (482)
144 2dr3_A UPF0273 protein PH0284; 96.4 0.0037 1.3E-07 53.7 5.5 36 80-115 22-57 (247)
145 2plr_A DTMP kinase, probable t 96.4 0.002 6.9E-08 54.0 3.7 28 81-108 4-31 (213)
146 2iyv_A Shikimate kinase, SK; t 96.4 0.0019 6.3E-08 53.0 3.3 25 82-106 3-27 (184)
147 2ze6_A Isopentenyl transferase 96.4 0.0019 6.4E-08 56.2 3.5 25 82-106 2-26 (253)
148 1zuh_A Shikimate kinase; alpha 96.4 0.0022 7.5E-08 51.8 3.7 26 81-106 7-32 (168)
149 2j41_A Guanylate kinase; GMP, 96.4 0.0022 7.5E-08 53.6 3.7 26 80-105 5-30 (207)
150 2bwj_A Adenylate kinase 5; pho 96.4 0.0022 7.5E-08 53.2 3.6 27 80-106 11-37 (199)
151 3e1s_A Exodeoxyribonuclease V, 96.3 0.021 7.3E-07 55.6 11.1 111 80-206 203-325 (574)
152 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0046 1.6E-07 52.5 5.7 28 80-107 22-49 (235)
153 3cm0_A Adenylate kinase; ATP-b 96.3 0.0021 7E-08 52.8 3.3 25 81-105 4-28 (186)
154 1y63_A LMAJ004144AAA protein; 96.3 0.0025 8.5E-08 52.4 3.8 25 80-104 9-33 (184)
155 1lvg_A Guanylate kinase, GMP k 96.3 0.0019 6.5E-08 53.8 3.1 26 81-106 4-29 (198)
156 2wwf_A Thymidilate kinase, put 96.3 0.0025 8.6E-08 53.5 3.8 28 80-107 9-36 (212)
157 3umf_A Adenylate kinase; rossm 96.3 0.0025 8.4E-08 53.9 3.5 28 78-105 26-53 (217)
158 2ewv_A Twitching motility prot 96.3 0.0069 2.4E-07 55.8 6.9 106 80-196 135-243 (372)
159 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.2E-08 53.2 3.5 24 83-106 2-25 (205)
160 3dzd_A Transcriptional regulat 96.3 0.061 2.1E-06 49.3 13.2 45 62-106 129-177 (368)
161 2zts_A Putative uncharacterize 96.3 0.0052 1.8E-07 52.8 5.8 26 80-105 29-54 (251)
162 1e6c_A Shikimate kinase; phosp 96.3 0.0022 7.7E-08 51.8 3.1 25 82-106 3-27 (173)
163 1n0w_A DNA repair protein RAD5 96.3 0.006 2E-07 52.3 6.0 25 80-104 23-47 (243)
164 3bh0_A DNAB-like replicative h 96.2 0.0057 2E-07 55.0 6.0 54 78-138 65-118 (315)
165 2cdn_A Adenylate kinase; phosp 96.2 0.0029 1E-07 52.7 3.8 25 81-105 20-44 (201)
166 4gp7_A Metallophosphoesterase; 96.2 0.0022 7.6E-08 52.0 2.8 22 80-101 8-29 (171)
167 2v54_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 52.5 3.7 26 80-105 3-28 (204)
168 2bdt_A BH3686; alpha-beta prot 96.2 0.0025 8.6E-08 52.5 3.1 22 82-103 3-24 (189)
169 1ukz_A Uridylate kinase; trans 96.2 0.0029 1E-07 52.7 3.5 26 80-105 14-39 (203)
170 2bbw_A Adenylate kinase 4, AK4 96.2 0.0032 1.1E-07 54.3 3.9 26 80-105 26-51 (246)
171 1ye8_A Protein THEP1, hypothet 96.2 0.0032 1.1E-07 51.5 3.6 24 83-106 2-25 (178)
172 1s96_A Guanylate kinase, GMP k 96.2 0.0033 1.1E-07 53.3 3.7 27 80-106 15-41 (219)
173 1qf9_A UMP/CMP kinase, protein 96.2 0.003 1E-07 52.0 3.4 26 81-106 6-31 (194)
174 1cr0_A DNA primase/helicase; R 96.2 0.013 4.5E-07 52.0 7.8 38 71-108 25-62 (296)
175 1htw_A HI0065; nucleotide-bind 96.2 0.005 1.7E-07 49.2 4.5 26 80-105 32-57 (158)
176 2wsm_A Hydrogenase expression/ 96.1 0.0061 2.1E-07 51.4 5.4 44 65-108 12-57 (221)
177 3asz_A Uridine kinase; cytidin 96.1 0.0032 1.1E-07 52.8 3.6 27 80-106 5-31 (211)
178 1xjc_A MOBB protein homolog; s 96.1 0.0049 1.7E-07 49.8 4.4 28 81-108 4-31 (169)
179 1ny5_A Transcriptional regulat 96.1 0.14 4.8E-06 47.3 14.9 44 62-105 137-184 (387)
180 1znw_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 52.7 3.6 27 80-106 19-45 (207)
181 1z6g_A Guanylate kinase; struc 96.1 0.0031 1.1E-07 53.4 3.4 26 80-105 22-47 (218)
182 1odf_A YGR205W, hypothetical 3 96.1 0.0058 2E-07 54.2 5.3 28 80-107 30-57 (290)
183 1cke_A CK, MSSA, protein (cyti 96.1 0.0035 1.2E-07 53.2 3.7 25 81-105 5-29 (227)
184 1aky_A Adenylate kinase; ATP:A 96.1 0.0036 1.2E-07 53.0 3.8 26 81-106 4-29 (220)
185 1zd8_A GTP:AMP phosphotransfer 96.1 0.0033 1.1E-07 53.5 3.5 26 80-105 6-31 (227)
186 1zak_A Adenylate kinase; ATP:A 96.1 0.0032 1.1E-07 53.4 3.3 27 80-106 4-30 (222)
187 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0035 1.2E-07 54.7 3.6 26 81-106 4-29 (260)
188 2jeo_A Uridine-cytidine kinase 96.1 0.0037 1.3E-07 54.0 3.6 26 80-105 24-49 (245)
189 2pt5_A Shikimate kinase, SK; a 96.1 0.0039 1.3E-07 50.2 3.6 24 83-106 2-25 (168)
190 3tqc_A Pantothenate kinase; bi 96.1 0.005 1.7E-07 55.3 4.6 43 64-106 69-117 (321)
191 2ehv_A Hypothetical protein PH 96.1 0.0051 1.7E-07 53.0 4.6 24 80-103 29-52 (251)
192 2pbr_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 51.5 3.5 24 83-106 2-25 (195)
193 4a74_A DNA repair and recombin 96.0 0.0049 1.7E-07 52.3 4.3 26 80-105 24-49 (231)
194 2hf9_A Probable hydrogenase ni 96.0 0.01 3.5E-07 50.2 6.3 38 71-108 26-65 (226)
195 4a1f_A DNAB helicase, replicat 96.0 0.018 6.1E-07 52.0 8.1 56 77-139 42-97 (338)
196 1rj9_A FTSY, signal recognitio 96.0 0.006 2E-07 54.5 5.0 35 81-116 102-136 (304)
197 2eyu_A Twitching motility prot 96.0 0.0054 1.8E-07 53.5 4.6 114 70-196 16-132 (261)
198 2j9r_A Thymidine kinase; TK1, 96.0 0.023 7.9E-07 47.5 8.2 109 80-198 27-139 (214)
199 3fb4_A Adenylate kinase; psych 96.0 0.0039 1.3E-07 52.5 3.5 23 83-105 2-24 (216)
200 2qmh_A HPR kinase/phosphorylas 96.0 0.0039 1.3E-07 51.5 3.3 26 80-105 33-58 (205)
201 2z0h_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 51.5 3.5 25 83-107 2-26 (197)
202 2qt1_A Nicotinamide riboside k 96.0 0.0037 1.3E-07 52.3 3.3 26 80-105 20-45 (207)
203 1fx0_B ATP synthase beta chain 96.0 0.0086 2.9E-07 56.5 5.9 55 80-137 164-218 (498)
204 2q6t_A DNAB replication FORK h 96.0 0.016 5.6E-07 54.6 8.0 53 80-139 199-252 (444)
205 2r6a_A DNAB helicase, replicat 96.0 0.016 5.5E-07 54.9 7.9 28 80-107 202-229 (454)
206 3dl0_A Adenylate kinase; phosp 96.0 0.0041 1.4E-07 52.4 3.4 23 83-105 2-24 (216)
207 4e22_A Cytidylate kinase; P-lo 96.0 0.0048 1.7E-07 53.5 3.9 27 80-106 26-52 (252)
208 3a8t_A Adenylate isopentenyltr 96.0 0.0037 1.3E-07 56.3 3.2 27 80-106 39-65 (339)
209 3b85_A Phosphate starvation-in 95.9 0.0063 2.1E-07 51.1 4.4 25 80-104 21-45 (208)
210 2if2_A Dephospho-COA kinase; a 95.9 0.0043 1.5E-07 51.7 3.3 22 82-103 2-23 (204)
211 2pez_A Bifunctional 3'-phospho 95.9 0.005 1.7E-07 50.2 3.6 26 81-106 5-30 (179)
212 2zr9_A Protein RECA, recombina 95.9 0.0067 2.3E-07 55.3 4.8 37 80-116 60-96 (349)
213 3exa_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 54.9 3.5 25 81-105 3-27 (322)
214 1m7g_A Adenylylsulfate kinase; 95.9 0.0049 1.7E-07 51.8 3.6 28 79-106 23-50 (211)
215 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0053 1.8E-07 55.6 3.9 29 81-109 24-52 (359)
216 2p5t_B PEZT; postsegregational 95.9 0.0035 1.2E-07 54.4 2.7 27 80-106 31-57 (253)
217 1u94_A RECA protein, recombina 95.9 0.0075 2.6E-07 55.1 4.9 37 80-116 62-98 (356)
218 3nwj_A ATSK2; P loop, shikimat 95.9 0.0048 1.6E-07 53.4 3.4 26 81-106 48-73 (250)
219 1jjv_A Dephospho-COA kinase; P 95.9 0.0047 1.6E-07 51.6 3.3 22 82-103 3-24 (206)
220 1uf9_A TT1252 protein; P-loop, 95.8 0.005 1.7E-07 51.2 3.3 25 80-104 7-31 (203)
221 1sq5_A Pantothenate kinase; P- 95.8 0.017 5.9E-07 51.6 7.1 27 80-106 79-105 (308)
222 3lnc_A Guanylate kinase, GMP k 95.8 0.0036 1.2E-07 53.5 2.5 26 80-105 26-52 (231)
223 1gtv_A TMK, thymidylate kinase 95.8 0.0027 9.2E-08 53.4 1.6 26 82-107 1-26 (214)
224 3b9q_A Chloroplast SRP recepto 95.8 0.0074 2.5E-07 53.8 4.4 29 80-108 99-127 (302)
225 3bgw_A DNAB-like replicative h 95.8 0.018 6E-07 54.3 7.2 29 80-108 196-224 (444)
226 1uj2_A Uridine-cytidine kinase 95.8 0.006 2E-07 52.9 3.7 27 80-106 21-47 (252)
227 2z43_A DNA repair and recombin 95.8 0.014 4.8E-07 52.6 6.3 27 80-106 106-132 (324)
228 1vma_A Cell division protein F 95.7 0.0086 2.9E-07 53.4 4.6 35 81-116 104-138 (306)
229 3aez_A Pantothenate kinase; tr 95.7 0.0059 2E-07 54.7 3.5 27 80-106 89-115 (312)
230 1ak2_A Adenylate kinase isoenz 95.7 0.0069 2.3E-07 51.8 3.8 27 80-106 15-41 (233)
231 3r20_A Cytidylate kinase; stru 95.7 0.0067 2.3E-07 51.8 3.6 27 80-106 8-34 (233)
232 3foz_A TRNA delta(2)-isopenten 95.7 0.006 2E-07 54.1 3.4 25 81-105 10-34 (316)
233 2yhs_A FTSY, cell division pro 95.7 0.012 4E-07 55.8 5.6 36 80-116 292-327 (503)
234 2i3b_A HCR-ntpase, human cance 95.7 0.006 2.1E-07 50.4 3.2 25 82-106 2-26 (189)
235 3crm_A TRNA delta(2)-isopenten 95.7 0.006 2E-07 54.7 3.4 26 81-106 5-30 (323)
236 1np6_A Molybdopterin-guanine d 95.7 0.011 3.9E-07 47.9 4.8 27 81-107 6-32 (174)
237 3ake_A Cytidylate kinase; CMP 95.7 0.0073 2.5E-07 50.4 3.7 25 82-106 3-27 (208)
238 3e70_C DPA, signal recognition 95.7 0.0087 3E-07 54.0 4.4 29 80-108 128-156 (328)
239 3sr0_A Adenylate kinase; phosp 95.7 0.007 2.4E-07 50.7 3.5 23 83-105 2-24 (206)
240 2xb4_A Adenylate kinase; ATP-b 95.6 0.0068 2.3E-07 51.5 3.5 23 83-105 2-24 (223)
241 3be4_A Adenylate kinase; malar 95.6 0.0068 2.3E-07 51.2 3.4 25 81-105 5-29 (217)
242 1nlf_A Regulatory protein REPA 95.6 0.012 4E-07 51.8 5.1 27 80-106 29-55 (279)
243 3d3q_A TRNA delta(2)-isopenten 95.6 0.0065 2.2E-07 54.8 3.4 25 82-106 8-32 (340)
244 2grj_A Dephospho-COA kinase; T 95.6 0.0073 2.5E-07 50.0 3.5 25 81-105 12-36 (192)
245 2v9p_A Replication protein E1; 95.6 0.011 3.7E-07 52.7 4.7 27 79-105 124-150 (305)
246 1e4v_A Adenylate kinase; trans 95.6 0.0072 2.5E-07 50.9 3.4 23 83-105 2-24 (214)
247 1u0j_A DNA replication protein 95.6 0.013 4.5E-07 50.9 5.0 25 81-105 104-128 (267)
248 2b8t_A Thymidine kinase; deoxy 95.6 0.011 3.8E-07 50.1 4.5 36 80-115 11-46 (223)
249 3tif_A Uncharacterized ABC tra 95.6 0.0079 2.7E-07 51.5 3.6 27 80-106 30-56 (235)
250 4eaq_A DTMP kinase, thymidylat 95.5 0.0084 2.9E-07 51.2 3.7 28 80-107 25-52 (229)
251 1vht_A Dephospho-COA kinase; s 95.5 0.0081 2.8E-07 50.7 3.5 23 81-103 4-26 (218)
252 3fwy_A Light-independent proto 95.5 0.012 4.1E-07 52.8 4.7 39 80-119 47-85 (314)
253 2pcj_A ABC transporter, lipopr 95.5 0.0067 2.3E-07 51.6 2.9 26 80-105 29-54 (224)
254 2r8r_A Sensor protein; KDPD, P 95.5 0.013 4.4E-07 49.5 4.6 26 83-108 8-33 (228)
255 2og2_A Putative signal recogni 95.5 0.011 3.7E-07 54.0 4.4 35 80-115 156-190 (359)
256 1a7j_A Phosphoribulokinase; tr 95.5 0.0056 1.9E-07 54.3 2.4 27 80-106 4-30 (290)
257 2fz4_A DNA repair protein RAD2 95.5 0.092 3.1E-06 44.8 10.0 41 64-105 92-132 (237)
258 3f9v_A Minichromosome maintena 95.5 0.0049 1.7E-07 60.4 2.1 44 62-105 295-351 (595)
259 1zu4_A FTSY; GTPase, signal re 95.4 0.013 4.3E-07 52.7 4.6 36 80-116 104-139 (320)
260 1xp8_A RECA protein, recombina 95.4 0.013 4.4E-07 53.7 4.8 37 80-116 73-109 (366)
261 2qm8_A GTPase/ATPase; G protei 95.4 0.016 5.4E-07 52.5 5.3 37 70-106 44-80 (337)
262 1q57_A DNA primase/helicase; d 95.4 0.025 8.7E-07 54.3 7.0 55 78-139 239-294 (503)
263 1v5w_A DMC1, meiotic recombina 95.4 0.021 7.3E-07 51.8 6.1 26 80-105 121-146 (343)
264 3dm5_A SRP54, signal recogniti 95.4 0.014 4.8E-07 54.6 4.9 28 81-108 100-127 (443)
265 3tqf_A HPR(Ser) kinase; transf 95.4 0.01 3.4E-07 47.8 3.3 25 80-104 15-39 (181)
266 2cbz_A Multidrug resistance-as 95.4 0.0083 2.8E-07 51.5 3.1 26 80-105 30-55 (237)
267 1ltq_A Polynucleotide kinase; 95.3 0.009 3.1E-07 53.1 3.3 24 81-104 2-25 (301)
268 1svm_A Large T antigen; AAA+ f 95.3 0.015 5.2E-07 53.4 4.9 26 80-105 168-193 (377)
269 4g1u_C Hemin import ATP-bindin 95.3 0.011 3.9E-07 51.6 3.8 26 80-105 36-61 (266)
270 3gfo_A Cobalt import ATP-bindi 95.3 0.01 3.6E-07 52.0 3.6 25 80-104 33-57 (275)
271 4b3f_X DNA-binding protein smu 95.3 0.02 6.8E-07 56.9 6.0 40 68-107 192-231 (646)
272 3kl4_A SRP54, signal recogniti 95.3 0.013 4.4E-07 54.8 4.3 28 81-108 97-124 (433)
273 1b0u_A Histidine permease; ABC 95.3 0.011 3.7E-07 51.6 3.6 27 80-106 31-57 (262)
274 3p32_A Probable GTPase RV1496/ 95.3 0.024 8.1E-07 51.8 6.1 28 80-107 78-105 (355)
275 2d2e_A SUFC protein; ABC-ATPas 95.3 0.011 3.7E-07 51.2 3.6 25 80-104 28-52 (250)
276 3zvl_A Bifunctional polynucleo 95.3 0.0095 3.2E-07 55.8 3.4 26 80-105 257-282 (416)
277 1sgw_A Putative ABC transporte 95.3 0.01 3.4E-07 50.1 3.2 26 80-105 34-59 (214)
278 2qi9_C Vitamin B12 import ATP- 95.3 0.011 3.7E-07 51.1 3.5 29 80-108 25-53 (249)
279 1pzn_A RAD51, DNA repair and r 95.3 0.013 4.6E-07 53.3 4.3 26 80-105 130-155 (349)
280 1ypw_A Transitional endoplasmi 95.3 0.0078 2.7E-07 61.3 3.0 47 62-108 477-538 (806)
281 1p9r_A General secretion pathw 95.3 0.027 9.3E-07 52.5 6.4 36 73-108 158-194 (418)
282 4edh_A DTMP kinase, thymidylat 95.3 0.018 6.1E-07 48.5 4.7 28 81-108 6-33 (213)
283 2xxa_A Signal recognition part 95.3 0.015 5.3E-07 54.5 4.8 38 81-118 100-137 (433)
284 4akg_A Glutathione S-transfera 95.3 0.083 2.8E-06 60.1 11.2 146 74-236 1260-1452(2695)
285 1ji0_A ABC transporter; ATP bi 95.3 0.0096 3.3E-07 51.2 3.1 26 80-105 31-56 (240)
286 2pze_A Cystic fibrosis transme 95.2 0.0098 3.3E-07 50.7 3.1 26 80-105 33-58 (229)
287 2onk_A Molybdate/tungstate ABC 95.2 0.014 4.7E-07 50.2 4.0 25 80-105 24-48 (240)
288 3v9p_A DTMP kinase, thymidylat 95.2 0.022 7.5E-07 48.4 5.2 29 80-108 24-52 (227)
289 2p67_A LAO/AO transport system 95.2 0.021 7.1E-07 51.9 5.4 29 78-106 53-81 (341)
290 4hlc_A DTMP kinase, thymidylat 95.2 0.017 5.9E-07 48.3 4.5 30 81-110 2-31 (205)
291 1g6h_A High-affinity branched- 95.2 0.012 4E-07 51.2 3.6 26 80-105 32-57 (257)
292 2zu0_C Probable ATP-dependent 95.2 0.012 4E-07 51.5 3.6 25 80-104 45-69 (267)
293 2f1r_A Molybdopterin-guanine d 95.2 0.0064 2.2E-07 49.3 1.7 26 82-107 3-28 (171)
294 2olj_A Amino acid ABC transpor 95.2 0.012 4.1E-07 51.3 3.6 26 80-105 49-74 (263)
295 2f6r_A COA synthase, bifunctio 95.2 0.01 3.6E-07 52.3 3.2 23 81-103 75-97 (281)
296 2ff7_A Alpha-hemolysin translo 95.2 0.012 4.2E-07 50.7 3.6 26 80-105 34-59 (247)
297 1yrb_A ATP(GTP)binding protein 95.2 0.02 6.9E-07 49.6 5.0 27 80-106 13-39 (262)
298 3bk7_A ABC transporter ATP-bin 95.2 0.099 3.4E-06 51.2 10.4 26 80-105 381-406 (607)
299 3eph_A TRNA isopentenyltransfe 95.2 0.011 3.9E-07 54.4 3.4 26 81-106 2-27 (409)
300 1mv5_A LMRA, multidrug resista 95.1 0.014 4.7E-07 50.3 3.7 25 80-104 27-51 (243)
301 1vpl_A ABC transporter, ATP-bi 95.1 0.011 3.7E-07 51.4 3.1 26 80-105 40-65 (256)
302 2ghi_A Transport protein; mult 95.1 0.011 3.8E-07 51.5 3.1 26 80-105 45-70 (260)
303 3lda_A DNA repair protein RAD5 95.1 0.018 6E-07 53.5 4.6 32 73-104 166-201 (400)
304 2ged_A SR-beta, signal recogni 95.1 0.025 8.6E-07 46.3 5.2 25 80-104 47-71 (193)
305 2ixe_A Antigen peptide transpo 95.1 0.014 4.8E-07 51.1 3.6 26 80-105 44-69 (271)
306 2ocp_A DGK, deoxyguanosine kin 95.0 0.013 4.5E-07 50.3 3.4 26 81-106 2-27 (241)
307 2ihy_A ABC transporter, ATP-bi 95.0 0.014 4.9E-07 51.3 3.6 26 80-105 46-71 (279)
308 3upu_A ATP-dependent DNA helic 95.0 0.028 9.6E-07 53.3 5.9 29 81-109 45-73 (459)
309 1ls1_A Signal recognition part 95.0 0.021 7.2E-07 50.7 4.6 36 81-117 98-133 (295)
310 2v3c_C SRP54, signal recogniti 95.0 0.013 4.4E-07 55.0 3.3 28 81-108 99-126 (432)
311 2yz2_A Putative ABC transporte 95.0 0.013 4.4E-07 51.3 3.1 25 80-104 32-56 (266)
312 3end_A Light-independent proto 95.0 0.022 7.5E-07 50.8 4.7 39 80-119 40-78 (307)
313 3vr4_D V-type sodium ATPase su 94.9 0.044 1.5E-06 51.2 6.7 28 80-107 150-177 (465)
314 2i1q_A DNA repair and recombin 94.9 0.033 1.1E-06 50.0 5.8 34 72-105 85-122 (322)
315 1oix_A RAS-related protein RAB 94.9 0.015 5.1E-07 47.8 3.2 23 82-104 30-52 (191)
316 3ld9_A DTMP kinase, thymidylat 94.9 0.039 1.3E-06 46.7 5.8 28 80-107 20-47 (223)
317 1q3t_A Cytidylate kinase; nucl 94.9 0.019 6.4E-07 49.1 3.9 26 80-105 15-40 (236)
318 1j8m_F SRP54, signal recogniti 94.9 0.022 7.4E-07 50.6 4.3 28 81-108 98-125 (297)
319 2f9l_A RAB11B, member RAS onco 94.9 0.015 5.2E-07 48.1 3.1 23 82-104 6-28 (199)
320 3hjn_A DTMP kinase, thymidylat 94.8 0.073 2.5E-06 44.0 7.3 33 83-115 2-34 (197)
321 3fvq_A Fe(3+) IONS import ATP- 94.8 0.016 5.5E-07 52.8 3.5 25 80-104 29-53 (359)
322 4tmk_A Protein (thymidylate ki 94.8 0.046 1.6E-06 45.9 6.1 28 81-108 3-30 (213)
323 3lv8_A DTMP kinase, thymidylat 94.8 0.026 8.8E-07 48.3 4.6 29 80-108 26-54 (236)
324 2wji_A Ferrous iron transport 94.8 0.016 5.5E-07 46.3 3.0 22 82-103 4-25 (165)
325 3gqb_B V-type ATP synthase bet 94.8 0.048 1.6E-06 50.9 6.5 27 80-106 146-172 (464)
326 2zej_A Dardarin, leucine-rich 94.8 0.012 4.2E-07 47.9 2.3 21 83-103 4-24 (184)
327 2gza_A Type IV secretion syste 94.8 0.024 8.1E-07 51.9 4.4 37 79-116 173-209 (361)
328 2iut_A DNA translocase FTSK; n 94.7 0.31 1.1E-05 47.0 12.1 39 81-119 214-255 (574)
329 3kta_A Chromosome segregation 94.7 0.021 7E-07 46.5 3.5 25 81-105 26-50 (182)
330 1g8f_A Sulfate adenylyltransfe 94.7 0.032 1.1E-06 53.3 5.2 45 63-107 373-421 (511)
331 2yv5_A YJEQ protein; hydrolase 94.7 0.03 1E-06 49.9 4.7 33 71-105 156-188 (302)
332 1z47_A CYSA, putative ABC-tran 94.7 0.02 6.7E-07 52.1 3.6 25 80-104 40-64 (355)
333 2dyk_A GTP-binding protein; GT 94.6 0.02 6.8E-07 45.2 3.2 23 82-104 2-24 (161)
334 2qe7_A ATP synthase subunit al 94.6 0.057 2E-06 51.0 6.7 26 80-105 161-187 (502)
335 2orv_A Thymidine kinase; TP4A 94.6 0.062 2.1E-06 45.4 6.2 110 80-198 18-127 (234)
336 3rlf_A Maltose/maltodextrin im 94.6 0.021 7.1E-07 52.4 3.6 25 80-104 28-52 (381)
337 2yyz_A Sugar ABC transporter, 94.6 0.021 7.2E-07 52.1 3.6 25 80-104 28-52 (359)
338 3gee_A MNME, tRNA modification 94.6 0.057 2E-06 51.3 6.7 77 28-104 160-256 (476)
339 2c61_A A-type ATP synthase non 94.6 0.039 1.3E-06 51.8 5.4 27 80-106 151-177 (469)
340 3sop_A Neuronal-specific septi 94.5 0.02 6.7E-07 50.2 3.2 22 83-104 4-25 (270)
341 2it1_A 362AA long hypothetical 94.5 0.022 7.5E-07 52.0 3.6 25 80-104 28-52 (362)
342 2bbs_A Cystic fibrosis transme 94.5 0.018 6.3E-07 50.9 2.9 26 80-105 63-88 (290)
343 3nh6_A ATP-binding cassette SU 94.5 0.017 5.7E-07 51.5 2.7 25 80-104 79-103 (306)
344 3geh_A MNME, tRNA modification 94.5 0.096 3.3E-06 49.5 8.0 78 26-104 150-247 (462)
345 1p5z_B DCK, deoxycytidine kina 94.5 0.012 4.1E-07 51.3 1.7 27 80-106 23-49 (263)
346 3fdi_A Uncharacterized protein 94.5 0.025 8.7E-07 47.0 3.6 26 81-106 6-31 (201)
347 2pjz_A Hypothetical protein ST 94.5 0.019 6.6E-07 50.0 3.0 25 81-105 30-54 (263)
348 1g29_1 MALK, maltose transport 94.5 0.023 7.8E-07 52.1 3.6 25 80-104 28-52 (372)
349 3tui_C Methionine import ATP-b 94.5 0.023 7.9E-07 51.8 3.6 25 80-104 53-77 (366)
350 3tmk_A Thymidylate kinase; pho 94.5 0.027 9.3E-07 47.4 3.8 28 80-107 4-31 (216)
351 2ck3_A ATP synthase subunit al 94.5 0.05 1.7E-06 51.5 5.9 27 80-106 161-188 (510)
352 1tq4_A IIGP1, interferon-induc 94.5 0.029 1E-06 52.1 4.3 25 80-104 68-92 (413)
353 1cp2_A CP2, nitrogenase iron p 94.5 0.034 1.2E-06 48.4 4.6 37 82-119 2-38 (269)
354 1v43_A Sugar-binding transport 94.5 0.023 8E-07 52.0 3.6 25 80-104 36-60 (372)
355 2vp4_A Deoxynucleoside kinase; 94.5 0.014 4.9E-07 49.7 2.1 25 80-104 19-43 (230)
356 2www_A Methylmalonic aciduria 94.4 0.031 1.1E-06 50.9 4.4 26 81-106 74-99 (349)
357 2h92_A Cytidylate kinase; ross 94.4 0.023 7.8E-07 47.8 3.3 25 81-105 3-27 (219)
358 1z2a_A RAS-related protein RAB 94.4 0.023 8E-07 45.1 3.2 22 83-104 7-28 (168)
359 2wjg_A FEOB, ferrous iron tran 94.4 0.022 7.5E-07 46.4 3.0 23 82-104 8-30 (188)
360 2axn_A 6-phosphofructo-2-kinas 94.4 0.033 1.1E-06 53.6 4.7 29 80-108 34-62 (520)
361 2ce2_X GTPase HRAS; signaling 94.4 0.023 7.8E-07 44.9 3.0 22 83-104 5-26 (166)
362 3cr8_A Sulfate adenylyltranfer 94.3 0.032 1.1E-06 54.0 4.4 43 65-107 349-395 (552)
363 2obl_A ESCN; ATPase, hydrolase 94.3 0.052 1.8E-06 49.3 5.5 35 73-107 61-97 (347)
364 2nzj_A GTP-binding protein REM 94.3 0.023 7.8E-07 45.5 2.9 22 83-104 6-27 (175)
365 3d31_A Sulfate/molybdate ABC t 94.3 0.02 6.7E-07 52.1 2.7 25 80-104 25-49 (348)
366 2ffh_A Protein (FFH); SRP54, s 94.3 0.042 1.4E-06 51.3 4.9 28 81-108 98-125 (425)
367 1kao_A RAP2A; GTP-binding prot 94.2 0.026 9E-07 44.6 3.1 22 83-104 5-26 (167)
368 2lkc_A Translation initiation 94.2 0.031 1.1E-06 44.9 3.6 24 80-103 7-30 (178)
369 2j37_W Signal recognition part 94.2 0.036 1.2E-06 52.9 4.4 28 81-108 101-128 (504)
370 2oap_1 GSPE-2, type II secreti 94.2 0.044 1.5E-06 52.6 5.0 28 79-106 258-285 (511)
371 2gj8_A MNME, tRNA modification 94.2 0.025 8.7E-07 45.5 2.9 23 82-104 5-27 (172)
372 3io3_A DEHA2D07832P; chaperone 94.2 0.053 1.8E-06 49.3 5.2 38 80-118 17-56 (348)
373 3gd7_A Fusion complex of cysti 94.2 0.028 9.6E-07 51.8 3.5 25 80-104 46-70 (390)
374 1u8z_A RAS-related protein RAL 94.1 0.029 9.9E-07 44.4 3.2 23 82-104 5-27 (168)
375 3e2i_A Thymidine kinase; Zn-bi 94.1 0.058 2E-06 45.1 5.0 124 62-198 12-139 (219)
376 2erx_A GTP-binding protein DI- 94.1 0.028 9.6E-07 44.7 3.0 21 83-103 5-25 (172)
377 1z08_A RAS-related protein RAB 94.1 0.029 1E-06 44.6 3.1 22 83-104 8-29 (170)
378 1ek0_A Protein (GTP-binding pr 94.1 0.03 1E-06 44.5 3.2 22 83-104 5-26 (170)
379 2r9v_A ATP synthase subunit al 94.1 0.067 2.3E-06 50.6 5.9 26 80-105 174-200 (515)
380 1nrj_B SR-beta, signal recogni 94.1 0.036 1.2E-06 46.4 3.7 25 80-104 11-35 (218)
381 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.03 1E-06 44.9 3.1 23 82-104 8-30 (177)
382 3q85_A GTP-binding protein REM 94.0 0.03 1E-06 44.6 3.0 21 83-103 4-24 (169)
383 4f4c_A Multidrug resistance pr 94.0 0.039 1.3E-06 59.3 4.7 25 80-104 443-467 (1321)
384 1c1y_A RAS-related protein RAP 94.0 0.031 1.1E-06 44.2 3.2 22 83-104 5-26 (167)
385 1z0j_A RAB-22, RAS-related pro 94.0 0.031 1.1E-06 44.4 3.1 22 83-104 8-29 (170)
386 1oxx_K GLCV, glucose, ABC tran 94.0 0.019 6.4E-07 52.3 2.0 25 80-104 30-54 (353)
387 1r8s_A ADP-ribosylation factor 94.0 0.032 1.1E-06 44.2 3.2 21 84-104 3-23 (164)
388 1nij_A Hypothetical protein YJ 94.0 0.028 9.7E-07 50.4 3.2 25 81-105 4-28 (318)
389 2oze_A ORF delta'; para, walke 94.0 0.048 1.6E-06 48.3 4.6 47 71-118 23-73 (298)
390 3con_A GTPase NRAS; structural 94.0 0.031 1.1E-06 45.6 3.2 23 82-104 22-44 (190)
391 1g16_A RAS-related protein SEC 94.0 0.03 1E-06 44.5 3.0 22 83-104 5-26 (170)
392 2qag_B Septin-6, protein NEDD5 94.0 0.039 1.3E-06 51.4 4.1 34 71-104 30-65 (427)
393 2afh_E Nitrogenase iron protei 94.0 0.043 1.5E-06 48.4 4.3 37 82-119 3-39 (289)
394 3gmt_A Adenylate kinase; ssgci 94.0 0.033 1.1E-06 47.3 3.3 24 82-105 9-32 (230)
395 1ky3_A GTP-binding protein YPT 94.0 0.032 1.1E-06 44.9 3.1 24 81-104 8-31 (182)
396 1tf7_A KAIC; homohexamer, hexa 94.0 0.072 2.5E-06 51.4 6.1 28 80-107 280-307 (525)
397 1m7b_A RND3/RHOE small GTP-bin 94.0 0.031 1E-06 45.5 3.0 23 82-104 8-30 (184)
398 1ko7_A HPR kinase/phosphatase; 94.0 0.036 1.2E-06 49.3 3.6 25 80-104 143-167 (314)
399 3ihw_A Centg3; RAS, centaurin, 94.0 0.032 1.1E-06 45.5 3.1 23 82-104 21-43 (184)
400 2gk6_A Regulator of nonsense t 93.9 0.083 2.8E-06 52.1 6.6 48 68-116 183-230 (624)
401 3q72_A GTP-binding protein RAD 93.9 0.029 9.8E-07 44.5 2.7 21 83-103 4-24 (166)
402 2hxs_A RAB-26, RAS-related pro 93.9 0.035 1.2E-06 44.6 3.3 22 83-104 8-29 (178)
403 1svi_A GTP-binding protein YSX 93.9 0.036 1.2E-06 45.3 3.4 25 80-104 22-46 (195)
404 1r2q_A RAS-related protein RAB 93.9 0.035 1.2E-06 44.1 3.2 21 83-103 8-28 (170)
405 2rcn_A Probable GTPase ENGC; Y 93.9 0.037 1.3E-06 50.4 3.6 35 71-106 206-240 (358)
406 3iqw_A Tail-anchored protein t 93.8 0.07 2.4E-06 48.1 5.3 38 80-118 15-52 (334)
407 1zj6_A ADP-ribosylation factor 93.8 0.065 2.2E-06 43.5 4.8 31 73-103 7-38 (187)
408 2cjw_A GTP-binding protein GEM 93.8 0.034 1.2E-06 45.7 3.0 21 83-103 8-28 (192)
409 1m2o_B GTP-binding protein SAR 93.8 0.034 1.2E-06 45.6 3.0 24 80-103 22-45 (190)
410 1upt_A ARL1, ADP-ribosylation 93.8 0.037 1.3E-06 44.1 3.2 23 81-103 7-29 (171)
411 1bif_A 6-phosphofructo-2-kinas 93.8 0.053 1.8E-06 51.5 4.7 29 80-108 38-66 (469)
412 3c5c_A RAS-like protein 12; GD 93.8 0.036 1.2E-06 45.2 3.1 23 82-104 22-44 (187)
413 2cxx_A Probable GTP-binding pr 93.8 0.031 1.1E-06 45.4 2.7 22 83-104 3-24 (190)
414 1c9k_A COBU, adenosylcobinamid 93.8 0.033 1.1E-06 45.3 2.8 22 83-104 1-22 (180)
415 2fn4_A P23, RAS-related protei 93.7 0.035 1.2E-06 44.6 3.0 24 81-104 9-32 (181)
416 1u0l_A Probable GTPase ENGC; p 93.7 0.059 2E-06 47.9 4.6 33 72-105 161-193 (301)
417 1lw7_A Transcriptional regulat 93.7 0.033 1.1E-06 51.1 3.0 26 81-106 170-195 (365)
418 1z0f_A RAB14, member RAS oncog 93.7 0.039 1.3E-06 44.3 3.2 23 82-104 16-38 (179)
419 3bc1_A RAS-related protein RAB 93.7 0.038 1.3E-06 45.0 3.2 22 82-103 12-33 (195)
420 3pqc_A Probable GTP-binding pr 93.6 0.043 1.5E-06 44.8 3.4 24 81-104 23-46 (195)
421 1f2t_A RAD50 ABC-ATPase; DNA d 93.6 0.046 1.6E-06 43.0 3.4 26 80-105 22-47 (149)
422 2y8e_A RAB-protein 6, GH09086P 93.6 0.038 1.3E-06 44.3 3.0 22 82-103 15-36 (179)
423 2oil_A CATX-8, RAS-related pro 93.6 0.04 1.4E-06 45.1 3.1 23 82-104 26-48 (193)
424 2dpy_A FLII, flagellum-specifi 93.6 0.079 2.7E-06 49.7 5.5 28 80-107 156-183 (438)
425 4dsu_A GTPase KRAS, isoform 2B 93.6 0.04 1.4E-06 44.7 3.1 22 83-104 6-27 (189)
426 2iwr_A Centaurin gamma 1; ANK 93.6 0.03 1E-06 45.1 2.3 22 83-104 9-30 (178)
427 1x6v_B Bifunctional 3'-phospho 93.6 0.042 1.4E-06 53.8 3.6 27 80-106 51-77 (630)
428 3kkq_A RAS-related protein M-R 93.6 0.042 1.4E-06 44.4 3.2 23 82-104 19-41 (183)
429 3kjh_A CO dehydrogenase/acetyl 93.6 0.049 1.7E-06 46.6 3.8 35 84-119 3-37 (254)
430 2bme_A RAB4A, RAS-related prot 93.5 0.04 1.4E-06 44.6 3.0 23 82-104 11-33 (186)
431 1pui_A ENGB, probable GTP-bind 93.5 0.023 7.9E-07 47.3 1.5 24 80-103 25-48 (210)
432 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.043 1.5E-06 44.4 3.2 21 83-103 7-27 (186)
433 2efe_B Small GTP-binding prote 93.5 0.043 1.5E-06 44.2 3.1 23 82-104 13-35 (181)
434 2g6b_A RAS-related protein RAB 93.5 0.044 1.5E-06 44.1 3.2 23 82-104 11-33 (180)
435 2a9k_A RAS-related protein RAL 93.5 0.044 1.5E-06 44.3 3.2 24 81-104 18-41 (187)
436 3zq6_A Putative arsenical pump 93.4 0.061 2.1E-06 48.4 4.3 37 81-118 14-50 (324)
437 3clv_A RAB5 protein, putative; 93.4 0.044 1.5E-06 45.0 3.1 23 82-104 8-30 (208)
438 3bwd_D RAC-like GTP-binding pr 93.4 0.045 1.5E-06 44.1 3.2 24 81-104 8-31 (182)
439 1fzq_A ADP-ribosylation factor 93.4 0.039 1.3E-06 44.8 2.7 24 81-104 16-39 (181)
440 4gzl_A RAS-related C3 botulinu 93.4 0.045 1.6E-06 45.4 3.2 24 80-103 29-52 (204)
441 3t1o_A Gliding protein MGLA; G 93.4 0.048 1.6E-06 44.5 3.3 25 82-106 15-39 (198)
442 1xx6_A Thymidine kinase; NESG, 93.4 0.076 2.6E-06 43.7 4.5 109 80-198 7-119 (191)
443 3cbq_A GTP-binding protein REM 93.4 0.034 1.2E-06 45.8 2.4 23 81-103 23-45 (195)
444 2atv_A RERG, RAS-like estrogen 93.4 0.045 1.6E-06 44.9 3.1 24 81-104 28-51 (196)
445 3mfy_A V-type ATP synthase alp 93.4 0.13 4.4E-06 49.2 6.5 25 80-104 226-250 (588)
446 3oaa_A ATP synthase subunit al 93.4 0.36 1.2E-05 45.6 9.4 25 80-104 161-186 (513)
447 3t5g_A GTP-binding protein RHE 93.4 0.045 1.5E-06 44.2 3.0 22 82-103 7-28 (181)
448 3tw8_B RAS-related protein RAB 93.4 0.042 1.4E-06 44.2 2.8 22 82-103 10-31 (181)
449 1zd9_A ADP-ribosylation factor 93.3 0.047 1.6E-06 44.5 3.2 24 81-104 22-45 (188)
450 2g3y_A GTP-binding protein GEM 93.3 0.045 1.5E-06 45.9 3.0 22 82-103 38-59 (211)
451 2ew1_A RAS-related protein RAB 93.3 0.045 1.5E-06 45.4 3.0 24 81-104 26-49 (201)
452 2gf9_A RAS-related protein RAB 93.3 0.048 1.7E-06 44.4 3.2 23 82-104 23-45 (189)
453 2fg5_A RAB-22B, RAS-related pr 93.3 0.046 1.6E-06 44.8 3.0 23 82-104 24-46 (192)
454 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.044 1.5E-06 51.8 3.2 26 80-105 137-162 (460)
455 3dz8_A RAS-related protein RAB 93.3 0.048 1.6E-06 44.6 3.1 23 82-104 24-46 (191)
456 2gks_A Bifunctional SAT/APS ki 93.3 0.12 4.2E-06 49.9 6.3 45 63-107 350-398 (546)
457 2bov_A RAla, RAS-related prote 93.3 0.049 1.7E-06 45.0 3.2 24 81-104 14-37 (206)
458 3hdt_A Putative kinase; struct 93.3 0.054 1.8E-06 45.9 3.4 26 81-106 14-39 (223)
459 1zbd_A Rabphilin-3A; G protein 93.3 0.047 1.6E-06 45.0 3.0 23 82-104 9-31 (203)
460 1knx_A Probable HPR(Ser) kinas 93.2 0.048 1.7E-06 48.4 3.2 25 80-104 146-170 (312)
461 1gwn_A RHO-related GTP-binding 93.2 0.047 1.6E-06 45.4 3.0 24 81-104 28-51 (205)
462 1vg8_A RAS-related protein RAB 93.2 0.049 1.7E-06 45.0 3.1 24 81-104 8-31 (207)
463 1f6b_A SAR1; gtpases, N-termin 93.2 0.038 1.3E-06 45.6 2.4 24 80-103 24-47 (198)
464 1fx0_A ATP synthase alpha chai 93.2 0.057 1.9E-06 51.1 3.8 26 80-105 162-188 (507)
465 2a5j_A RAS-related protein RAB 93.2 0.05 1.7E-06 44.4 3.1 21 83-103 23-43 (191)
466 2fh5_B SR-beta, signal recogni 93.2 0.05 1.7E-06 45.3 3.2 24 81-104 7-30 (214)
467 1z06_A RAS-related protein RAB 93.2 0.051 1.8E-06 44.3 3.1 23 81-103 20-42 (189)
468 3reg_A RHO-like small GTPase; 93.2 0.052 1.8E-06 44.5 3.2 23 82-104 24-46 (194)
469 1ega_A Protein (GTP-binding pr 93.2 0.044 1.5E-06 48.7 2.9 24 81-104 8-31 (301)
470 3oes_A GTPase rhebl1; small GT 93.1 0.05 1.7E-06 44.9 3.0 24 81-104 24-47 (201)
471 1m8p_A Sulfate adenylyltransfe 93.1 0.054 1.9E-06 52.7 3.6 28 80-107 395-422 (573)
472 2qnr_A Septin-2, protein NEDD5 93.1 0.041 1.4E-06 48.9 2.6 21 83-103 20-40 (301)
473 3tkl_A RAS-related protein RAB 93.1 0.054 1.8E-06 44.3 3.2 23 82-104 17-39 (196)
474 2p5s_A RAS and EF-hand domain 93.1 0.054 1.8E-06 44.6 3.1 24 81-104 28-51 (199)
475 4dkx_A RAS-related protein RAB 93.1 0.054 1.9E-06 45.6 3.2 21 83-103 15-35 (216)
476 1tf7_A KAIC; homohexamer, hexa 93.1 0.073 2.5E-06 51.3 4.5 32 70-101 27-59 (525)
477 1x3s_A RAS-related protein RAB 93.1 0.055 1.9E-06 44.1 3.2 23 82-104 16-38 (195)
478 4dzz_A Plasmid partitioning pr 93.0 0.079 2.7E-06 43.8 4.1 36 82-118 2-38 (206)
479 3bfv_A CAPA1, CAPB2, membrane 93.0 0.15 5.2E-06 44.5 6.0 38 80-118 81-119 (271)
480 2gf0_A GTP-binding protein DI- 93.0 0.054 1.8E-06 44.4 3.0 23 81-103 8-30 (199)
481 4f4c_A Multidrug resistance pr 93.0 0.091 3.1E-06 56.5 5.4 25 80-104 1104-1128(1321)
482 1ksh_A ARF-like protein 2; sma 93.0 0.046 1.6E-06 44.3 2.5 25 80-104 17-41 (186)
483 2h17_A ADP-ribosylation factor 92.9 0.049 1.7E-06 44.1 2.6 24 81-104 21-44 (181)
484 3cmu_A Protein RECA, recombina 92.9 0.11 3.8E-06 57.3 5.9 36 80-115 1426-1461(2050)
485 2q3h_A RAS homolog gene family 92.9 0.055 1.9E-06 44.6 2.9 23 81-103 20-42 (201)
486 2bcg_Y Protein YP2, GTP-bindin 92.9 0.057 2E-06 44.7 3.0 22 82-103 9-30 (206)
487 2o52_A RAS-related protein RAB 92.9 0.053 1.8E-06 44.8 2.7 23 81-103 25-47 (200)
488 3lxx_A GTPase IMAP family memb 92.8 0.057 2E-06 46.1 3.0 25 80-104 28-52 (239)
489 3cph_A RAS-related protein SEC 92.8 0.061 2.1E-06 44.6 3.2 23 81-103 20-42 (213)
490 1moz_A ARL1, ADP-ribosylation 92.8 0.04 1.4E-06 44.5 1.9 24 80-103 17-40 (183)
491 3ug7_A Arsenical pump-driving 92.8 0.095 3.2E-06 47.6 4.6 37 80-117 25-61 (349)
492 3llu_A RAS-related GTP-binding 92.8 0.055 1.9E-06 44.5 2.8 24 81-104 20-43 (196)
493 2b6h_A ADP-ribosylation factor 92.8 0.055 1.9E-06 44.3 2.7 24 80-103 28-51 (192)
494 3l0o_A Transcription terminati 92.7 0.13 4.3E-06 47.1 5.1 29 80-108 174-202 (427)
495 3cio_A ETK, tyrosine-protein k 92.7 0.15 5E-06 45.3 5.6 38 80-118 103-141 (299)
496 2aka_B Dynamin-1; fusion prote 92.7 0.11 3.9E-06 45.7 5.0 25 80-104 25-49 (299)
497 2woo_A ATPase GET3; tail-ancho 92.7 0.12 4.1E-06 46.5 5.1 38 80-118 18-55 (329)
498 2j1l_A RHO-related GTP-binding 92.7 0.056 1.9E-06 45.2 2.7 23 81-103 34-56 (214)
499 2fv8_A H6, RHO-related GTP-bin 92.7 0.063 2.2E-06 44.5 3.0 24 81-104 25-48 (207)
500 1t9h_A YLOQ, probable GTPase E 92.6 0.03 1E-06 49.9 0.9 25 80-104 172-196 (307)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.8e-39 Score=314.46 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=208.2
Q ss_pred cchhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHh----hhcccccceEEEEeccccccCCCChHHHHHHH
Q 040862 65 VGVESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFN----RISRNFEGSCFLENVREESQKPGGLASLQQKL 135 (381)
Q Consensus 65 vGR~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 135 (381)
+||+.++++|.++|. ..++|+|+|+||+||||||.++++ ++..+|+..+|+ +++.... .+...+...+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv-~vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL-KDSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE-ECCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE-EECCCCC--CCHHHHHHHH
Confidence 499999999999986 368999999999999999999996 678889888887 4443211 3578888899
Q ss_pred HHHHhccCC--CC---CC------HHHHHHHhCCC-eEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 136 LSEVLKDVN--VI---PH------IDLNFRRLSRR-KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 136 ~~~~~~~~~--~~---~~------~~~l~~~l~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
+..+..... .. .. ...+...+.++ ++||||||+|+.+.+ .+.. .++|+||||||+..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 988876521 11 11 34478888886 999999999998866 3322 27999999999854
Q ss_pred --------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHHHHHHHhccc
Q 040862 199 --------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENAIKKLKNFLH 270 (381)
Q Consensus 199 --------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~~~~l~~~~~ 270 (381)
+++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++.+....+......+.....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL 360 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccH
Confidence 8999999999999999866532 3566788999999999999999999999987643222222222222233
Q ss_pred ccHHHHHHhhhcCCChhhhhhhh-----------hhhcccCCcCHHHHHHHHHHc--CCCh-----------hhhHHHHh
Q 040862 271 QNILDVLKISYDGLDNDEKNIFL-----------DVACFFKGEDVYLAKKFLEAS--GFYP-----------EIGISILV 326 (381)
Q Consensus 271 ~~~~~~l~~~~~~L~~~~~~~l~-----------~la~~~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~ 326 (381)
..+..++..||+.|++..+.||. +||+||++++.. ..+|.+. |+.. ...++.|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 44555556666666555555555 999999887665 5677776 3332 23799999
Q ss_pred hCCceeEcC---CCcEEecHHHHHHHHHHHhhhc
Q 040862 327 DKSLIAINP---YNKITMHDLLQELGREIVRQES 357 (381)
Q Consensus 327 ~~~Li~~~~---~~~~~~H~lv~~~~~~~~~~e~ 357 (381)
++||++... ..+|+|||++|+||++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999998653 2469999999999998776654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-36 Score=323.31 Aligned_cols=287 Identities=22% Similarity=0.305 Sum_probs=225.8
Q ss_pred CccCCCcccchhhHHHHHHHhh----CCCcEEEEecCCCCchhHHHHHHHhh---hcccccceEEEEeccccccCCCChH
Q 040862 57 FDSLQNELVGVESRVEEIESLL----GAAPLLGIWGIGGIGKTTIARVIFNR---ISRNFEGSCFLENVREESQKPGGLA 129 (381)
Q Consensus 57 ~~~~~~~~vGR~~~l~~l~~~l----~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~ 129 (381)
.+.++..||||+.++++|.+.| .+.++|+|+|+||+||||||.+++++ ...+|...+||..+.... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHHH
Confidence 4455578999999999999999 37889999999999999999999986 355688788777665421 11233
Q ss_pred HHHHHHHHHHhccC----CCCCCHHH----HHHHhCCC--eEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc-
Q 040862 130 SLQQKLLSEVLKDV----NVIPHIDL----NFRRLSRR--KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ- 198 (381)
Q Consensus 130 ~l~~~l~~~~~~~~----~~~~~~~~----l~~~l~~~--~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~- 198 (381)
.....+...+.... ........ +...+.++ ++||||||+|+...+..+ +++++||||||+..
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 33455555555432 11223333 45555555 999999999998776554 57899999999984
Q ss_pred ------------CC-CCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHHHHHH
Q 040862 199 ------------MK-GFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENAIKKL 265 (381)
Q Consensus 199 ------------l~-~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~~~~l 265 (381)
++ +|+.+|+++||...+.... +..++.+.+|+++|+|+||||+++|++++.++ ..|...+..+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 55 4999999999998874332 23346689999999999999999999998765 4688888887
Q ss_pred Hhcc-----------cccHHHHHHhhhcCCChhhhhhhhhhhcccCC--cCHHHHHHHHHHcCCChhhhHHHHhhCCcee
Q 040862 266 KNFL-----------HQNILDVLKISYDGLDNDEKNIFLDVACFFKG--EDVYLAKKFLEASGFYPEIGISILVDKSLIA 332 (381)
Q Consensus 266 ~~~~-----------~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Li~ 332 (381)
.... ..++..++..||+.|++.+|.||.+||+||.+ ++...+..+|..++...+..++.|+++|||+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 6533 13588999999999999999999999999976 6788999999877667788999999999999
Q ss_pred EcCCCc---EEecHHHHHHHHHHHhhh
Q 040862 333 INPYNK---ITMHDLLQELGREIVRQE 356 (381)
Q Consensus 333 ~~~~~~---~~~H~lv~~~~~~~~~~e 356 (381)
...++. |+||+++|+|+++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 776664 999999999999987655
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=291.20 Aligned_cols=281 Identities=22% Similarity=0.291 Sum_probs=213.6
Q ss_pred CCccCCCcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh---cccccceEEEEeccccccCCCCh
Q 040862 56 GFDSLQNELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI---SRNFEGSCFLENVREESQKPGGL 128 (381)
Q Consensus 56 ~~~~~~~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 128 (381)
+.+..+..||||+.++++|.+.+. +.++|+|+|+||+||||||.+++++. ...|+..++|.++... +.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-----~~ 192 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-----DK 192 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-----CH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-----ch
Confidence 345566889999999999999986 57899999999999999999999864 6678666666555432 22
Q ss_pred HHHHHH---HHHHHhcc----CCCCCCHHH----HHHHhCC--CeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEec
Q 040862 129 ASLQQK---LLSEVLKD----VNVIPHIDL----NFRRLSR--RKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 129 ~~l~~~---l~~~~~~~----~~~~~~~~~----l~~~l~~--~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
..+... +...+... ......... +...+.+ +++||||||+|+...+..+ +++++||||||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR 265 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECC
Confidence 223332 23333321 112223333 4444444 7899999999987765543 57899999999
Q ss_pred ccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHHHH
Q 040862 196 NKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWENA 261 (381)
Q Consensus 196 ~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~~~ 261 (381)
+.. +++|+.+|+.+||...++... ....+.+.+|++.|+|+||||+.+|+.++... ..|...
T Consensus 266 ~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 266 DKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp CGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred CcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 875 358999999999999885421 22245688999999999999999999998753 358777
Q ss_pred HHHHHhcc-----------cccHHHHHHhhhcCCChhhhhhhhhhhcccCC--cCHHHHHHHHHHcCCChhhhHHHHhhC
Q 040862 262 IKKLKNFL-----------HQNILDVLKISYDGLDNDEKNIFLDVACFFKG--EDVYLAKKFLEASGFYPEIGISILVDK 328 (381)
Q Consensus 262 ~~~l~~~~-----------~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~ 328 (381)
+..+.... ..++..++..+|+.|++..+.||.++|+||.+ ++...+..+|+.+.......++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 77776432 24688999999999999999999999999875 677888888876544567789999999
Q ss_pred CceeEcCC---CcEEecHHHHHHHHHH
Q 040862 329 SLIAINPY---NKITMHDLLQELGREI 352 (381)
Q Consensus 329 ~Li~~~~~---~~~~~H~lv~~~~~~~ 352 (381)
|||....+ .+|+||+++|+|+++.
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99986543 2699999999999988
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=6.1e-34 Score=285.97 Aligned_cols=280 Identities=18% Similarity=0.139 Sum_probs=207.9
Q ss_pred cccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHh--hhcccccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 63 ELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFN--RISRNFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
..|||+.++++|.++|. +.++|+|+||||+||||||+++++ +++.+|+..++|.+++. ..+...+...+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~----~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN----CNSPETVLEMLQK 204 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC----SSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC----CCCHHHHHHHHHH
Confidence 45999999999999986 478999999999999999999996 46788998666666654 2334555555554
Q ss_pred HHhccC----CCCC-------CH----HHHHHHh---CCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc-
Q 040862 138 EVLKDV----NVIP-------HI----DLNFRRL---SRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ- 198 (381)
Q Consensus 138 ~~~~~~----~~~~-------~~----~~l~~~l---~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~- 198 (381)
.+.... .... .. ..+...+ .++++||||||+|+.+.++.+. ++|+||||||+..
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHH
Confidence 332210 0000 11 1244433 6799999999999988887752 6899999999875
Q ss_pred -----------CC------CCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccC--CHHHHH
Q 040862 199 -----------MK------GFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFER--KREVWE 259 (381)
Q Consensus 199 -----------l~------~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~--~~~~~~ 259 (381)
++ +|+.+||++||.+... .. . .+...+ .|+|+||||+++|+.|+.+ ....|.
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC-CC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcC-CC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 55 8999999999998842 22 1 123333 4999999999999999876 566675
Q ss_pred HHHHHHHhcccccHHHHHHhhhcCCChhh-hhhhhhhhcccCC--cCHHHHHHHHHHcCC-ChhhhHHHHhhCCceeEcC
Q 040862 260 NAIKKLKNFLHQNILDVLKISYDGLDNDE-KNIFLDVACFFKG--EDVYLAKKFLEASGF-YPEIGISILVDKSLIAINP 335 (381)
Q Consensus 260 ~~~~~l~~~~~~~~~~~l~~~~~~L~~~~-~~~l~~la~~~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~~Li~~~~ 335 (381)
.. ....+..+++.||+.|++.. |.||++||+||.+ ++.+.+..+|.+++. +....++.|+++||++.++
T Consensus 349 ~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~ 421 (1221)
T 1vt4_I 349 HV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421 (1221)
T ss_dssp HC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCS
T ss_pred cC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeC
Confidence 42 35679999999999999999 9999999999975 566788899977642 3667899999999999763
Q ss_pred -CCcEEecHHHHHHHHHHHhhhcCCCCCccccCChhhHH
Q 040862 336 -YNKITMHDLLQELGREIVRQESTNPGNRTRLWHHEDIY 373 (381)
Q Consensus 336 -~~~~~~H~lv~~~~~~~~~~e~~~~~~~~~l~~~~~~~ 373 (381)
.++|+||+++++++ .. ....++.++++..+..+.
T Consensus 422 ~~~rYrMHDLllELr-~~---~~e~~alHrRLvd~Y~~~ 456 (1221)
T 1vt4_I 422 KESTISIPSIYLELK-VK---LENEYALHRSIVDHYNIP 456 (1221)
T ss_dssp SSSEEBCCCHHHHHH-HH---HSCCTTHHHHHHHHHHHH
T ss_pred CCCEEEehHHHHHHh-cC---CCcHHHHHHHHHHHHHhh
Confidence 56899999998743 11 113455566655554444
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.84 E-value=8.5e-20 Score=169.12 Aligned_cols=275 Identities=17% Similarity=0.205 Sum_probs=168.8
Q ss_pred ccCCCcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccc--cCCCChHHHHHHH
Q 040862 58 DSLQNELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREES--QKPGGLASLQQKL 135 (381)
Q Consensus 58 ~~~~~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l~~~l 135 (381)
...+..|+||+.+++.|.+.+...++++|+|++|+|||+|+++++++.. .+|+ ++.... ........+...+
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP-----GILI-DCRELYAERGHITREELIKEL 81 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHSS-----EEEE-EHHHHHHTTTCBCHHHHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHcC-----cEEE-EeecccccccCCCHHHHHHHH
Confidence 3345789999999999999987558999999999999999999998752 3333 333221 0112344444444
Q ss_pred HHHHhc---------------c-C-C-CCCCHHHHHHHhC-----CCeEEEEEeCCCChh--------hHHHHHhccCCC
Q 040862 136 LSEVLK---------------D-V-N-VIPHIDLNFRRLS-----RRKVLIVLDDVTCFN--------QIESLVGSLDRL 184 (381)
Q Consensus 136 ~~~~~~---------------~-~-~-~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~--------~~~~l~~~~~~~ 184 (381)
...+.. . . . .......+.+.+. +++++|||||++... .+..++..+...
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 433221 0 0 0 1133444333332 148999999996532 222222222111
Q ss_pred CCCCeEEEEeccc----------c--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 185 LPESRILITTRNK----------Q--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 185 ~~~~~iliTsr~~----------~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
.++.++|+|++.. . +.+|+.+|+.+++........... .++.+..+++.|+|+|
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIP 239 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCH
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCH
Confidence 2577888886531 0 889999999999987643222111 2467889999999999
Q ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHHhcccccHHHHHHhhhcCC---ChhhhhhhhhhhcccCCcCHHHHHHHHHHc--
Q 040862 241 LALKILGCYLFE-RKREVWENAIKKLKNFLHQNILDVLKISYDGL---DNDEKNIFLDVACFFKGEDVYLAKKFLEAS-- 314 (381)
Q Consensus 241 Lal~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L---~~~~~~~l~~la~~~~~~~~~~l~~~~~~~-- 314 (381)
+++..++..+.. .+...+ ...+. ..+...+...+..+ ++..+.++..+|+ ...+...+...+...
T Consensus 240 ~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~ 310 (350)
T 2qen_A 240 GWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGT 310 (350)
T ss_dssp HHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhC
Confidence 999998876432 222211 11111 11112222222333 6888999999998 345666666655321
Q ss_pred CCC---hhhhHHHHhhCCceeEcCCCcEE-ecHHHHHHHH
Q 040862 315 GFY---PEIGISILVDKSLIAINPYNKIT-MHDLLQELGR 350 (381)
Q Consensus 315 ~~~---~~~~l~~L~~~~Li~~~~~~~~~-~H~lv~~~~~ 350 (381)
+.. ....++.|++.+||... ++.|. .|++++.+.+
T Consensus 311 ~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 311 KIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 222 34679999999999977 46665 5899998864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.83 E-value=2.6e-19 Score=166.21 Aligned_cols=275 Identities=16% Similarity=0.201 Sum_probs=165.1
Q ss_pred CCCcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccc-cCCCChHHHHHHHHHH
Q 040862 60 LQNELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREES-QKPGGLASLQQKLLSE 138 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~ 138 (381)
.+..|+||+.+++.|.+ +.. ++++|+|++|+|||+|+.++++..... .+| .++.... ........+...+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 84 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLP---YIY-LDLRKFEERNYISYKDFLLELQKE 84 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEE-EEGGGGTTCSCCCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEE-EEchhhccccCCCHHHHHHHHHHH
Confidence 45789999999999999 887 799999999999999999999876432 334 3343321 0012233333333332
Q ss_pred Hhc-------------cC-----C-----------CCCCHHHHHHHhCC---CeEEEEEeCCCChh-----hHHHHHhcc
Q 040862 139 VLK-------------DV-----N-----------VIPHIDLNFRRLSR---RKVLIVLDDVTCFN-----QIESLVGSL 181 (381)
Q Consensus 139 ~~~-------------~~-----~-----------~~~~~~~l~~~l~~---~~~LlvlDdv~~~~-----~~~~l~~~~ 181 (381)
+.. .. + ....+..+.+.+.. ++++|||||++... .+..++..+
T Consensus 85 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~ 164 (357)
T 2fna_A 85 INKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYA 164 (357)
T ss_dssp HHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHH
T ss_pred HHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHH
Confidence 210 00 0 12334444444432 49999999996532 222222222
Q ss_pred CCCCCCCeEEEEeccc----------c--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhC
Q 040862 182 DRLLPESRILITTRNK----------Q--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQ 237 (381)
Q Consensus 182 ~~~~~~~~iliTsr~~----------~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 237 (381)
....++.++|+|++.. . +.+|+.+|+.+++............. ...+++.|+
T Consensus 165 ~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~ 240 (357)
T 2fna_A 165 YDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIG 240 (357)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHC
T ss_pred HHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhC
Confidence 2112467888888742 0 78999999999998765321212211 278999999
Q ss_pred CChHHHHHHHHHhcc-CCHHHHH-HHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccCCcCHHHHHHHHH-Hc
Q 040862 238 GVPLALKILGCYLFE-RKREVWE-NAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFKGEDVYLAKKFLE-AS 314 (381)
Q Consensus 238 G~PLal~~~~~~l~~-~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~-~~ 314 (381)
|+|+++..++..+.. .+...|. ...+.........+..++... ..+++..+.++..+|+ + . +...+...+. ..
T Consensus 241 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~ 316 (357)
T 2fna_A 241 GIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGR-EIARKRYLNIMRTLSK-C-G-KWSDVKRALELEE 316 (357)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhc
Confidence 999999998876542 2222221 111111111111111111100 1678899999999998 3 3 6666654432 11
Q ss_pred C--C---ChhhhHHHHhhCCceeEcCCCcEE-ecHHHHHHH
Q 040862 315 G--F---YPEIGISILVDKSLIAINPYNKIT-MHDLLQELG 349 (381)
Q Consensus 315 ~--~---~~~~~l~~L~~~~Li~~~~~~~~~-~H~lv~~~~ 349 (381)
+ . .....++.|++.+||...+ +.|+ .|++++++.
T Consensus 317 g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 317 GIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp CSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 2 2 2356799999999999874 5666 589999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.76 E-value=2.8e-17 Score=155.73 Aligned_cols=275 Identities=15% Similarity=0.125 Sum_probs=163.8
Q ss_pred CCCcccchhhHHHHHHHhh-C--------CCcEEEE--ecCCCCchhHHHHHHHhhhccc-----ccceEEEEecccccc
Q 040862 60 LQNELVGVESRVEEIESLL-G--------AAPLLGI--WGIGGIGKTTIARVIFNRISRN-----FEGSCFLENVREESQ 123 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l-~--------~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~ 123 (381)
.+..|+||+.+++.|.+.+ . ..+.+.| +|++|+|||+|++.+++..... +...+.+.++..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 4478999999999999998 2 4568888 9999999999999999876543 233333333322
Q ss_pred CCCChHHHHHHHHHHHhccCCC-CCCH----HHHHHHhC--CCeEEEEEeCCCCh--------hhHHHHHhccCCC---C
Q 040862 124 KPGGLASLQQKLLSEVLKDVNV-IPHI----DLNFRRLS--RRKVLIVLDDVTCF--------NQIESLVGSLDRL---L 185 (381)
Q Consensus 124 ~~~~~~~l~~~l~~~~~~~~~~-~~~~----~~l~~~l~--~~~~LlvlDdv~~~--------~~~~~l~~~~~~~---~ 185 (381)
......+...++..+...... .... ..+...+. +++++|||||++.. +.+..+...+... +
T Consensus 97 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 97 -APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp -CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred -CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 345667777887777544221 1122 22444443 67999999999653 3343333332211 2
Q ss_pred --CCCeEEEEeccc---------------------cCCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhC-----
Q 040862 186 --PESRILITTRNK---------------------QMKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQ----- 237 (381)
Q Consensus 186 --~~~~iliTsr~~---------------------~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~----- 237 (381)
.+..+|+||+.. .+++|+.+++.++|...+..........++.+..+++.|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 344577777521 1889999999999976542111111122467888999999
Q ss_pred -CChHHHHHHHHHhcc------C---CHHHHHHHHHHHHhcccccH-HHHHHhhhcCCChhhhhhhhhhhccc----CCc
Q 040862 238 -GVPLALKILGCYLFE------R---KREVWENAIKKLKNFLHQNI-LDVLKISYDGLDNDEKNIFLDVACFF----KGE 302 (381)
Q Consensus 238 -G~PLal~~~~~~l~~------~---~~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~L~~~~~~~l~~la~~~----~~~ 302 (381)
|+|..+..+...... . +...+..... ... ...+...+..|++..+.++..++.+. ..+
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~-------~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS-------ENEAASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH-------HC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-------HHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 999876655443210 0 1222221111 111 34455677889999999999888753 234
Q ss_pred CHHHHHH----HH-HHcCCC------hhhhHHHHhhCCceeEcC-----CCcEEecHHH
Q 040862 303 DVYLAKK----FL-EASGFY------PEIGISILVDKSLIAINP-----YNKITMHDLL 345 (381)
Q Consensus 303 ~~~~l~~----~~-~~~~~~------~~~~l~~L~~~~Li~~~~-----~~~~~~H~lv 345 (381)
+...+.. +. ...+.. ....++.|++.|||.... .|+|++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 4443322 22 222221 245789999999998642 3445555443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=1.4e-14 Score=135.70 Aligned_cols=257 Identities=16% Similarity=0.072 Sum_probs=160.4
Q ss_pred CCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhccc------c-cceEEEEeccccccCCCC
Q 040862 61 QNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRN------F-EGSCFLENVREESQKPGG 127 (381)
Q Consensus 61 ~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~~ 127 (381)
+..|+||+.+++.+...+. .++.+.|+|++|+|||+||+.+++.+... + ...+.+.+.... ...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV---GGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH---CSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC---CCC
Confidence 3789999999999998775 36789999999999999999999876433 2 333444443332 114
Q ss_pred hHHHHHHHHHHHhccCCC--C----CCHHHHHHHhCCCeEEEEEeCCCChh------h-HHHHHhccCCCCCCCeEEEEe
Q 040862 128 LASLQQKLLSEVLKDVNV--I----PHIDLNFRRLSRRKVLIVLDDVTCFN------Q-IESLVGSLDRLLPESRILITT 194 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~--~----~~~~~l~~~l~~~~~LlvlDdv~~~~------~-~~~l~~~~~~~~~~~~iliTs 194 (381)
...+...++..+...... . ..+..+...+...+.+|||||++... . +..+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 566667777666433111 1 11333566666655699999996533 2 33343332 677888888
Q ss_pred cccc------------------CCCCCHHHHHHHHHHhhcc---CCCCChhHHHHHHHHHHHhC---CChHHHH-HHHHH
Q 040862 195 RNKQ------------------MKGFGDDHALELFNRHAFR---QNLVDVDYKELSDKVINYAQ---GVPLALK-ILGCY 249 (381)
Q Consensus 195 r~~~------------------l~~L~~~ea~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLal~-~~~~~ 249 (381)
+... +++++.++..+++...+.. ....+ ++.++.+++.++ |+|..+. .+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8651 8899999999999987632 12222 356778888888 9988443 32222
Q ss_pred h--c----cCCHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccCCcCH-HHHHHHHHHcCCC-----
Q 040862 250 L--F----ERKREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFKGEDV-YLAKKFLEASGFY----- 317 (381)
Q Consensus 250 l--~----~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~-~~l~~~~~~~~~~----- 317 (381)
. . .-+.+.+...+.... ...+..+++.|++..+.++..++....+.+. .....+....+..
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 2 1 123444444443321 2346667788999999998888871110111 2333333332211
Q ss_pred -hhhhHHHHhhCCceeEc
Q 040862 318 -PEIGISILVDKSLIAIN 334 (381)
Q Consensus 318 -~~~~l~~L~~~~Li~~~ 334 (381)
....++.|.+.|+|+..
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 23478899999999853
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=2.7e-14 Score=133.97 Aligned_cols=286 Identities=13% Similarity=0.081 Sum_probs=170.1
Q ss_pred CCCcccchhhHHHHHHHhhC------CCc--EEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHH
Q 040862 60 LQNELVGVESRVEEIESLLG------AAP--LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASL 131 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 131 (381)
.+..|+||+.+++.+..++. .+. .+.|+|++|+|||||++.++..........+.+.+... ......+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHHH
Confidence 34789999999999999886 234 89999999999999999999887654222333333222 3445566
Q ss_pred HHHHHHHHhccCCC-CCCHHH----HHHHh--CCCeEEEEEeCCCCh--hhHHHHHhccCCCC----CCCeEEEEecccc
Q 040862 132 QQKLLSEVLKDVNV-IPHIDL----NFRRL--SRRKVLIVLDDVTCF--NQIESLVGSLDRLL----PESRILITTRNKQ 198 (381)
Q Consensus 132 ~~~l~~~~~~~~~~-~~~~~~----l~~~l--~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~----~~~~iliTsr~~~ 198 (381)
...++..+...... ...... +...+ .+++.+||||+++.. ..+..+...+.... .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 66766665443211 112222 22222 256899999999653 44555555443222 3667777776541
Q ss_pred -------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh---------CCChHHHHHHHHHh
Q 040862 199 -------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYA---------QGVPLALKILGCYL 250 (381)
Q Consensus 199 -------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~~~~~l 250 (381)
+++++.++..+++...+..........++.++.+++.+ .|+|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 88999999999998876431111122357788899999 79987665544332
Q ss_pred c------c---CCHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhccc---C--CcCHHHHHHHHHH---
Q 040862 251 F------E---RKREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFF---K--GEDVYLAKKFLEA--- 313 (381)
Q Consensus 251 ~------~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~---~--~~~~~~l~~~~~~--- 313 (381)
. . -+.+........ ..... +...+..|++..+.++..++.+. . .++...+......
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~---~~~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKE---VLFGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHH---HSCCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHH---Hhhhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 112222222221 11122 22335678888888888888654 2 3454444333222
Q ss_pred -cCC------ChhhhHHHHhhCCceeEcCC-------CcE-------EecHHHHHHHHHHHhhh
Q 040862 314 -SGF------YPEIGISILVDKSLIAINPY-------NKI-------TMHDLLQELGREIVRQE 356 (381)
Q Consensus 314 -~~~------~~~~~l~~L~~~~Li~~~~~-------~~~-------~~H~lv~~~~~~~~~~e 356 (381)
.+. .....++.|.+.|+|..... |++ ..|+++..+...++.+|
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 111 12357899999999986432 322 24566666666655543
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2.7e-14 Score=133.72 Aligned_cols=264 Identities=16% Similarity=0.108 Sum_probs=155.2
Q ss_pred CCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccc--cceEEEEeccccccCCCChHHH
Q 040862 60 LQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF--EGSCFLENVREESQKPGGLASL 131 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l 131 (381)
.+..|+||+.+++.|.+++. ..+.+.|+|++|+|||||++.++..+...+ ...+.+.+... ......+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----IDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----HCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----CCCHHHH
Confidence 34789999999999999886 367899999999999999999999776543 22333333322 1233445
Q ss_pred HHHHHHHHhccCC-CCCCHHH----HHHHhC--CCeEEEEEeCCCC------hhhHHHHHhccCC-CCCCCeEEEEeccc
Q 040862 132 QQKLLSEVLKDVN-VIPHIDL----NFRRLS--RRKVLIVLDDVTC------FNQIESLVGSLDR-LLPESRILITTRNK 197 (381)
Q Consensus 132 ~~~l~~~~~~~~~-~~~~~~~----l~~~l~--~~~~LlvlDdv~~------~~~~~~l~~~~~~-~~~~~~iliTsr~~ 197 (381)
...++..+..... ....... +...+. +++.+||||+++. .+.+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5555444432211 1111222 333333 4589999999954 3344445443321 13355667777643
Q ss_pred c-------------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhC---CChHHHHHHHHHhc----
Q 040862 198 Q-------------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQ---GVPLALKILGCYLF---- 251 (381)
Q Consensus 198 ~-------------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~~~l~---- 251 (381)
. +++++.++..+++...+..........++..+.+++.++ |+|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1 889999999999987653211111122466777888887 99985544333221
Q ss_pred --c---CCHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccC----CcCHHHH----HHHHHHcCCC-
Q 040862 252 --E---RKREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFK----GEDVYLA----KKFLEASGFY- 317 (381)
Q Consensus 252 --~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~----~~~~~~l----~~~~~~~~~~- 317 (381)
. -+...+....... ....+...+..+++..+.++..++.+.. .++...+ ..+....+..
T Consensus 254 ~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 0 1233333332222 2245666778899999988888885322 2333222 2222221211
Q ss_pred -----hhhhHHHHhhCCceeEc
Q 040862 318 -----PEIGISILVDKSLIAIN 334 (381)
Q Consensus 318 -----~~~~l~~L~~~~Li~~~ 334 (381)
....++.|.+.|+|+..
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 24578999999999853
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.59 E-value=3.2e-13 Score=126.45 Aligned_cols=260 Identities=16% Similarity=0.123 Sum_probs=158.7
Q ss_pred CCCcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccc-----cceEEEEeccccccCCCCh
Q 040862 60 LQNELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF-----EGSCFLENVREESQKPGGL 128 (381)
Q Consensus 60 ~~~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 128 (381)
.+..|+||+.+++.+..++. ..+.+.|+|++|+|||+||+.+++...... ...+.+.+... ..+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCCH
Confidence 44789999999999999883 567899999999999999999998764431 23333333322 3455
Q ss_pred HHHHHHHHHHHhccCCC-CCCH----HHHHHHhC--CCeEEEEEeCCCChh-------hHHHHHhccCCC--CCCCeEEE
Q 040862 129 ASLQQKLLSEVLKDVNV-IPHI----DLNFRRLS--RRKVLIVLDDVTCFN-------QIESLVGSLDRL--LPESRILI 192 (381)
Q Consensus 129 ~~l~~~l~~~~~~~~~~-~~~~----~~l~~~l~--~~~~LlvlDdv~~~~-------~~~~l~~~~~~~--~~~~~ili 192 (381)
..+...++..+...... .... ..+...+. +++++||||+++... .+..++...... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 66777777777543221 1122 22444553 468999999997543 233333332221 34567777
Q ss_pred Eecccc-------------------CCCCCHHHHHHHHHHhhcc---CCCCChhHHHHHHHHHHHhC---CChHHHHHHH
Q 040862 193 TTRNKQ-------------------MKGFGDDHALELFNRHAFR---QNLVDVDYKELSDKVINYAQ---GVPLALKILG 247 (381)
Q Consensus 193 Tsr~~~-------------------l~~L~~~ea~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLal~~~~ 247 (381)
||+... +++++.++..+++...+.. ....+ ++..+.+++.++ |+|..+..+.
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 776541 8899999999999887532 12222 355777888888 9995443332
Q ss_pred HHhc------c---CCHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhcccCC---cCHHHHH----HHH
Q 040862 248 CYLF------E---RKREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVACFFKG---EDVYLAK----KFL 311 (381)
Q Consensus 248 ~~l~------~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~~~~~---~~~~~l~----~~~ 311 (381)
.... + -+.+.+....... ....+..++..|++..+.++..++.+..+ +....+. .++
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 2221 1 1233343333332 12345667789999999888877743222 3333222 222
Q ss_pred HHcCC------ChhhhHHHHhhCCceeE
Q 040862 312 EASGF------YPEIGISILVDKSLIAI 333 (381)
Q Consensus 312 ~~~~~------~~~~~l~~L~~~~Li~~ 333 (381)
...+. .....++.|...|+++.
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 22221 12357889999999986
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.49 E-value=1e-12 Score=114.66 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=111.1
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..|+||+.+++.|...+. ..+.+.|+|++|+|||+|++.+++.+...+.....- ..... ....+...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP---------CGVCD-NCREIEQG 92 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC---------CSCSH-HHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CcccH-HHHHHhcc
Confidence 579999999999999987 235899999999999999999998765432110000 00000 00000000
Q ss_pred Hhcc-----CCCCCC---HHHHHHHh-----CCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 VLKD-----VNVIPH---IDLNFRRL-----SRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~~~~-----~~~~~~---~~~l~~~l-----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
.... ...... +..+...+ .+++.+|||||++. ...+..++..+.....+..+|+||+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0000 000000 11122221 24679999999964 3456666655554456678888886543
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHh
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 250 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l 250 (381)
+++++.++..+++...+...... ..++..+.+++.|+|+|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999998877543322 124678899999999999987766543
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=3.2e-12 Score=109.91 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=109.3
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..|+||+..++.+.+++. ..+.+.|+|++|+|||+||+.+++.+... +...+...+... ......+.. ....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~ 91 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD----ERGIDVVRH-KIKE 91 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC----TTCHHHHHH-HHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc----ccChHHHHH-HHHH
Confidence 679999999999999987 33459999999999999999999876433 232233222211 222222221 1111
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
...... ....++.+|||||++.. .....+...+.....++.+|+||+... ++++
T Consensus 92 ~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 92 FARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp HHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred HhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 111100 01257889999999654 334445444433345678888887653 8899
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+.++..+++...+...... ..++..+.+++.++|+|..+..+..
T Consensus 162 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999998876432221 1246778899999999986654433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=4.8e-11 Score=108.81 Aligned_cols=165 Identities=14% Similarity=0.260 Sum_probs=105.5
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..|+|++..++.|..++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+... ..... ....+...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~~~-~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD----DRGID-VVRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS----CCSHH-HHHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc----ccChH-HHHHHHHH
Confidence 679999999999999987 33349999999999999999999876432 222222222211 11222 22222222
Q ss_pred HhccCCCCCCHHHHHHHh-CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCC
Q 040862 139 VLKDVNVIPHIDLNFRRL-SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKG 201 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~ 201 (381)
+..... .+ .+++.++|+||++.. .....+...+....+++.+|+||.... +++
T Consensus 96 ~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 96 FAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp HHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred HHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 221100 01 245889999999753 334444444433346678888876543 889
Q ss_pred CCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 202 FGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 202 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
++.++..+++...+...... ..++.++.+++.++|+|..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a 205 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQA 205 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999998876432211 12467888999999999554
No 15
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.31 E-value=1.4e-12 Score=106.22 Aligned_cols=59 Identities=41% Similarity=0.612 Sum_probs=53.8
Q ss_pred CCCcEEEeEeeecCcccccccccchHHHHHHHHhh-cHHHHHHHHHHHHHHhcccCCccC
Q 040862 2 VYAQIAIPVFYRVDPSHVRKQIGSFGVSFSELEEK-FPEKMQRWRSALTEAANLSGFDSL 60 (381)
Q Consensus 2 ~~~~~~~pv~~~v~p~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~~~~~~~~~~~~ 60 (381)
..|++|+||||+|+|++||+|+|+|+++|.+++++ ..+.+++|+.+|.++++++|+.+.
T Consensus 93 ~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 93 KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC
Confidence 46899999999999999999999999999998776 346699999999999999999873
No 16
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.30 E-value=2.7e-10 Score=103.98 Aligned_cols=238 Identities=17% Similarity=0.158 Sum_probs=140.6
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
..|+|++..++.+...+. ..+.+.|+|++|+|||+||+.+++..... +.+.+... .....++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~----~~~~~~l~~- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN----LRVTSGPA----IEKPGDLAA- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC----EEEECTTT----CCSHHHHHH-
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC----EEEEeccc----cCChHHHHH-
Confidence 689999999999888875 34789999999999999999999876432 22222221 111111111
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCC------------------CCCCeEEEEe
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRL------------------LPESRILITT 194 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~------------------~~~~~iliTs 194 (381)
.+.. ....+.+|+||+++... ....++..+... .++..+|.||
T Consensus 83 ---~l~~--------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 83 ---ILAN--------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ---HHTT--------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ---HHHH--------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1110 01356699999997643 233333222110 1245666666
Q ss_pred cccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccC------
Q 040862 195 RNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFER------ 253 (381)
Q Consensus 195 r~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~------ 253 (381)
.... +++++.++..+++...+...... ..++..+.+++.+.|+|..+..+...+...
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 223 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGE 223 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSC
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcC
Confidence 5332 88899999999998877443322 224678889999999999887766554321
Q ss_pred ---CHHHHHHHHHHHHhcccccHHHHHHhhhcCCChhhhhhhhhhhc-c-cCCcCHHHHHHHHHHcCCChhhhHHH-Hhh
Q 040862 254 ---KREVWENAIKKLKNFLHQNILDVLKISYDGLDNDEKNIFLDVAC-F-FKGEDVYLAKKFLEASGFYPEIGISI-LVD 327 (381)
Q Consensus 254 ---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~la~-~-~~~~~~~~l~~~~~~~~~~~~~~l~~-L~~ 327 (381)
+...+...... +......+++.++.++..+.. + +..+....+...++.+.......+.. +++
T Consensus 224 ~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 224 EVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR 291 (324)
T ss_dssp SCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH
Confidence 12222222111 122234577777777766553 3 23456666666653322222233444 889
Q ss_pred CCceeEcCCCcE
Q 040862 328 KSLIAINPYNKI 339 (381)
Q Consensus 328 ~~Li~~~~~~~~ 339 (381)
.++|+..+.|+.
T Consensus 292 ~~li~~~~~g~~ 303 (324)
T 1hqc_A 292 QGLLKRTPRGRV 303 (324)
T ss_dssp TTSEEEETTEEE
T ss_pred hcchhcCCccce
Confidence 999987755553
No 17
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.28 E-value=1.5e-12 Score=107.85 Aligned_cols=59 Identities=36% Similarity=0.726 Sum_probs=54.6
Q ss_pred CCcEEEeEeeecCcccccccccchHHHHHHHHhhcH-HHHHHHHHHHHHHhcccCCccCC
Q 040862 3 YAQIAIPVFYRVDPSHVRKQIGSFGVSFSELEEKFP-EKMQRWRSALTEAANLSGFDSLQ 61 (381)
Q Consensus 3 ~~~~~~pv~~~v~p~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~l~~~~~~~~~~~~~ 61 (381)
.|++|+||||+|+|++||+|.|+|+++|.++++++. +.+++|+.+|.++++++||.+.+
T Consensus 122 ~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 122 PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC
Confidence 578999999999999999999999999999988875 45999999999999999998865
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=8.5e-11 Score=107.32 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=107.4
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.|..++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+...... . .........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG----I-NVIREKVKE 99 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH----H-HTTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc----h-HHHHHHHHH
Confidence 679999999999999887 34469999999999999999999876432 121222222211000 0 000111111
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
...... ...+++.++|+|+++.. +....+...+.....++++|+||.... ++++
T Consensus 100 ~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l 169 (327)
T 1iqp_A 100 FARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 169 (327)
T ss_dssp HHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCC
T ss_pred HHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCC
Confidence 100000 01146789999999753 345555554444456678888876543 8899
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+.++..+++...+...... ..++..+.+++.++|+|..+..+..
T Consensus 170 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999998876433321 2246788899999999987654443
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.15 E-value=8.3e-10 Score=100.35 Aligned_cols=169 Identities=13% Similarity=0.124 Sum_probs=108.0
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.|.+.+. ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+...... ..........+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 94 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIKEFAR- 94 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHHHHHH-
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHHHHHh-
Confidence 679999999999999988 3335899999999999999999987632 2222222222221111 1111111111110
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
... ...+++.++|+|+++.. .....+...+....+++.+|+||.... ++++
T Consensus 95 ---~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~ 161 (319)
T 2chq_A 95 ---TAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (319)
T ss_dssp ---SCC----------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCC
T ss_pred ---cCC----------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCC
Confidence 000 00246789999999654 345556666655456677887776543 8899
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+.++..+++...+...... ..++.++.+++.++|++..+....
T Consensus 162 ~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999998877443322 224678889999999998664433
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.15 E-value=5.7e-10 Score=103.84 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=108.8
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.|...+. ..+.+.|+|++|+|||++|+.+++.+........ . .......+..+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~--~--------~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--T--------PCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS--S--------CCSSSHHHHHHHTS
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--C--------CCcccHHHHHHhcc
Confidence 579999999999999987 2457899999999999999999987643211000 0 00000001111000
Q ss_pred H----hc-c---CCCCCCHHHHHHHhC-----CCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc-----
Q 040862 139 V----LK-D---VNVIPHIDLNFRRLS-----RRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ----- 198 (381)
Q Consensus 139 ~----~~-~---~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~----- 198 (381)
. .. . ......+..+...+. +++.++|+||++.. .....++..+.....+..+|++|....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 0 00 0 011223344444433 45789999999643 345556555544445667777775443
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+++++.++..+++...+...+.. ..++.++.+++.++|+|..+..+..
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 88999999999998776432221 1246678899999999998766543
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.06 E-value=5.8e-09 Score=95.69 Aligned_cols=242 Identities=14% Similarity=0.154 Sum_probs=139.3
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
..|+|++..++.+..++. ..+.+.|+|++|+|||+||+.+++.....| ...+.... .....+. .
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~----~~~~~~~-~ 99 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI----EKSGDLA-A 99 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC----CSHHHHH-H
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc----cchhHHH-H
Confidence 689999999999998876 235789999999999999999988764432 22222111 1111111 1
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCC------------------CCCCeEEEEe
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRL------------------LPESRILITT 194 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~------------------~~~~~iliTs 194 (381)
. ... ...+.+|+||+++.. .....++..+... .++..+|.+|
T Consensus 100 ~-----------------~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 100 I-----------------LTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp H-----------------HHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred H-----------------HHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 1 111 235679999999753 2233333222111 1234566655
Q ss_pred cccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHH
Q 040862 195 RNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWE 259 (381)
Q Consensus 195 r~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~ 259 (381)
.... +++++.++...++...+..... ...++..+.+.+.+.|+|-.+..+...+.. +
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~-----~- 233 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRD-----F- 233 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHH-----H-
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHH-----H-
Confidence 5422 8899999999999877643321 123467888889999999766554433210 0
Q ss_pred HHHHHHHhc--c-cccHHHH---HHhhhcCCChhhhhhhhhhhccc-CCcCHHHHHHHHHHcCCChhhhHH-HHhhCCce
Q 040862 260 NAIKKLKNF--L-HQNILDV---LKISYDGLDNDEKNIFLDVACFF-KGEDVYLAKKFLEASGFYPEIGIS-ILVDKSLI 331 (381)
Q Consensus 260 ~~~~~l~~~--~-~~~~~~~---l~~~~~~L~~~~~~~l~~la~~~-~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Li 331 (381)
...... . ...+... +......++..++.++..++-.. ..++...+...++.+.......++ .|++.++|
T Consensus 234 ---a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli 310 (338)
T 3pfi_A 234 ---ADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYI 310 (338)
T ss_dssp ---HHHTTCSEECHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSE
T ss_pred ---HHhhcCCccCHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCce
Confidence 000000 0 0111111 22233445555566766666552 235566666665433222334555 89999999
Q ss_pred eEcCCCcEEe
Q 040862 332 AINPYNKITM 341 (381)
Q Consensus 332 ~~~~~~~~~~ 341 (381)
.....|+...
T Consensus 311 ~~~~~g~~~t 320 (338)
T 3pfi_A 311 ERTAKGRIAS 320 (338)
T ss_dssp EEETTEEEEC
T ss_pred ecCCCccccc
Confidence 9876776543
No 22
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9.4e-09 Score=92.52 Aligned_cols=151 Identities=10% Similarity=0.066 Sum_probs=93.5
Q ss_pred CcccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhcccc------cceEEEEeccccccCCCChH
Q 040862 62 NELVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF------EGSCFLENVREESQKPGGLA 129 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 129 (381)
..+.||+.|++.|...|. .++.+.|+|+||+|||++++.+++++.... ...+...+... ..+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence 348999999999998876 678899999999999999999999875432 12222333322 34456
Q ss_pred HHHHHHHHHHhccC-CCCCCHHH---HHHHh---CCCeEEEEEeCCCCh---hhHHHHHhccCCCCCCCeEEEEecccc-
Q 040862 130 SLQQKLLSEVLKDV-NVIPHIDL---NFRRL---SRRKVLIVLDDVTCF---NQIESLVGSLDRLLPESRILITTRNKQ- 198 (381)
Q Consensus 130 ~l~~~l~~~~~~~~-~~~~~~~~---l~~~l---~~~~~LlvlDdv~~~---~~~~~l~~~~~~~~~~~~iliTsr~~~- 198 (381)
.+...+..++.+.. ........ +...+ .+++++++||+++.. +.+..++...........||.++....
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 67777777775542 11222222 33333 357899999999764 333333331111112223333332221
Q ss_pred -------------------CCCCCHHHHHHHHHHhhc
Q 040862 199 -------------------MKGFGDDHALELFNRHAF 216 (381)
Q Consensus 199 -------------------l~~L~~~ea~~l~~~~~~ 216 (381)
++|++.+|..+++..++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 778999999998887763
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=7.3e-09 Score=95.53 Aligned_cols=177 Identities=12% Similarity=0.191 Sum_probs=106.2
Q ss_pred CcccchhhHHHHHHHhhCCC--cEEEEecCCCCchhHHHHHHHhhhccc--ccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGAA--PLLGIWGIGGIGKTTIARVIFNRISRN--FEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~--~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
..++|++..++.|...+... +.+.|+|++|+|||++|+.++..+... +...+...+... ......+ .....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD----ERGISIV-REKVK 111 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS----CCCHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc----ccchHHH-HHHHH
Confidence 67999999999999999833 459999999999999999999876421 222222222211 1222222 22221
Q ss_pred HHhccCCCCCCHHHHHHH-hCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CC
Q 040862 138 EVLKDVNVIPHIDLNFRR-LSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MK 200 (381)
Q Consensus 138 ~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~ 200 (381)
....... .......... -...+.+|++|+++.. .....++..+.......++|+++.... ++
T Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 112 NFARLTV-SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFK 190 (353)
T ss_dssp HHHHSCC-CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECC
T ss_pred HHhhhcc-cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeC
Confidence 2111100 0000000111 1235579999998643 334445444433345567777765443 88
Q ss_pred CCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 201 GFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 201 ~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++.++..+.+...+......- .++..+.+++.++|+|..+...
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988764433221 2467889999999999875443
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.01 E-value=8e-09 Score=92.35 Aligned_cols=163 Identities=19% Similarity=0.272 Sum_probs=97.4
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.++...... ++............
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~~~~ 92 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVKKFI 92 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCCCST
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHHhcc
Confidence 689999999999988762 46789999999999999999999876432 22222222211011
Q ss_pred C-hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCC--CCCC
Q 040862 127 G-LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDR--LLPE 187 (381)
Q Consensus 127 ~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~--~~~~ 187 (381)
. .......+ +.......+.+|+||+++.. ..+..++..+.. ...+
T Consensus 93 ~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 93 GEGASLVKDI----------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp THHHHHHHHH----------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred chHHHHHHHH----------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 0 11111111 12222346789999999543 123333333221 1234
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILG 247 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~ 247 (381)
..||.||.... +++.+.++-.+++...+........ .....+...+.| .|-.|..+.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHHH
Confidence 56677775432 7888999999999877644332211 225667777777 555555443
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.7e-08 Score=97.87 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=98.0
Q ss_pred CcccchhhHHHHHHHhhCC-------------------CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccc
Q 040862 62 NELVGVESRVEEIESLLGA-------------------APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREES 122 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~-------------------~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 122 (381)
.+++|++..++.|.+++.. .+.+.|+|++|+|||++|+.+++.+. ..+...+...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s~-- 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNASD-- 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTTS--
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCCC--
Confidence 6799999999999998862 37899999999999999999998872 2222232221
Q ss_pred cCCCChHHHHHHHHHHHhccCCCCCCHHHHHH--HhCCCeEEEEEeCCCCh-----hhHHHHHhccCCCCCCCeEEEEec
Q 040862 123 QKPGGLASLQQKLLSEVLKDVNVIPHIDLNFR--RLSRRKVLIVLDDVTCF-----NQIESLVGSLDRLLPESRILITTR 195 (381)
Q Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~--~l~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~~~~iliTsr 195 (381)
... .......+.................. ....++.+|+||+++.. ..+..+...+. ..+..||+++.
T Consensus 113 --~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~ 187 (516)
T 1sxj_A 113 --VRS-KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICN 187 (516)
T ss_dssp --CCC-HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEES
T ss_pred --cch-HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEc
Confidence 111 11222211111111101010110100 11357889999999543 11233333222 12344555544
Q ss_pred ccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 196 NKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 196 ~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
... +++++.++..+++...+....... .++.+..|++.++|++..+..+
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 321 788999999998877664332111 1245788999999976554433
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.96 E-value=3e-09 Score=92.43 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=94.4
Q ss_pred Ccccchh---hHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVE---SRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~---~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
..|+|++ ..++.+..+.. ..+.+.|+|++|+|||+||+.+++..........++ +........
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~-~~~~~~~~~----------- 95 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI-PLGIHASIS----------- 95 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE-EGGGGGGSC-----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHH-----------
Confidence 5688743 55666666655 578999999999999999999998776543323333 333221100
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--h--HHHHHhccCCC-CCC-CeEEEEecccc------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--Q--IESLVGSLDRL-LPE-SRILITTRNKQ------------ 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~--~~~l~~~~~~~-~~~-~~iliTsr~~~------------ 198 (381)
......+ .++.+|||||++... . ...+...+... ..+ .++|+||+...
T Consensus 96 -------------~~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 96 -------------TALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp -------------GGGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred -------------HHHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 0000011 345699999995432 1 22232221110 112 24777776322
Q ss_pred ---------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 199 ---------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 199 ---------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+++++.++..+++...+...... ..++..+.+++.++|++..+..+..
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 78889999999888776433221 1246778888999999877655443
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=3.8e-09 Score=88.20 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=41.0
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..|+||+.+++.+.+.+. ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999987 4578999999999999999999987643
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.88 E-value=8.8e-08 Score=87.19 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=97.4
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++..... ++..+....... ..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~~~g 93 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSKWMG 93 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTTTGG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhcccc
Confidence 678999999999998772 35679999999999999999999876432 222222211110 00
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh-------------hHHHHHhccC---CCCCCCeE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN-------------QIESLVGSLD---RLLPESRI 190 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~~~---~~~~~~~i 190 (381)
........+ +.......+.+|+||+++... ....++..+. ....+..|
T Consensus 94 ~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 94 ESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp GHHHHHHHH----------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred hHHHHHHHH----------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 011111111 122223577899999996431 1333333332 22334455
Q ss_pred EEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 040862 191 LITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGC 248 (381)
Q Consensus 191 liTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 248 (381)
|.||.... ++..+.++-.+++...+....... .......+++.+.| .+-.|..+..
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55665432 777888888888887764432221 13557778888877 4555554443
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.87 E-value=1.3e-07 Score=83.18 Aligned_cols=166 Identities=15% Similarity=0.201 Sum_probs=92.3
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
..++|.+...+.|.+++. ..+.+.|+|++|+|||++|+.+++..... ++..+..........
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVIGG 81 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhccC
Confidence 578899988888877642 34678999999999999999999876432 222222221110000
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-----------------hhHHHHHhccCCC--CCCC
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-----------------NQIESLVGSLDRL--LPES 188 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------------~~~~~l~~~~~~~--~~~~ 188 (381)
. ....+.. .+.......+.+|+||+++.. ..+..++..+... ..+.
T Consensus 82 ~---~~~~~~~------------~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 82 L---GAARVRS------------LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp H---HHHHHHH------------HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred h---hHHHHHH------------HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 0 0000000 122222346789999999754 1233444433321 2344
Q ss_pred eEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 040862 189 RILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILG 247 (381)
Q Consensus 189 ~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 247 (381)
.+|.||.... +++.+.++-.+++...+....... ........+.+.+.|++- .|..+.
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHHHH
Confidence 5566663321 667888888888887764333222 212234677888887654 444443
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=4.6e-08 Score=90.21 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=101.9
Q ss_pred CcccchhhHHHHHHHhh-C--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE----------------------
Q 040862 62 NELVGVESRVEEIESLL-G--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE---------------------- 116 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l-~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~---------------------- 116 (381)
.+++|++..++.+.+++ . ..+.+.|+|++|+||||+++.++..+.......+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 67999999999999998 5 2333999999999999999999985422211111100
Q ss_pred -eccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEE
Q 040862 117 -NVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILIT 193 (381)
Q Consensus 117 -~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliT 193 (381)
........... ....+.++..+.......... . ...+..++-++|+|+++... ....++..+.....++.+|++
T Consensus 94 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~-~-ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 94 LEITPSDMGNND-RIVIQELLKEVAQMEQVDFQD-S-KDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp EEECCC----CC-HHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred EEecHhhcCCcc-hHHHHHHHHHHHHhccccccc-c-ccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 00000000000 001122222221110000000 0 00023467799999997542 334444444333456778877
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhH-HHHHHHHHHHhCCChHHHHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDY-KELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
|.... +++++.++..+++...+...+.. .. ++.++.|++.++|++..+..+..
T Consensus 171 t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 171 CDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp ESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred eCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 76643 88999999999998776433211 11 25678899999999976655443
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.86 E-value=3.1e-07 Score=83.51 Aligned_cols=166 Identities=13% Similarity=0.120 Sum_probs=95.9
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 126 (381)
..++|.+...+.|.+.+. ..+.+.|+|++|+|||+||+.+++..... .++..+....... ..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~---~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSSDLVSKWLG 88 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC---EEEEEECCSSCCSSCC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC---cEEEEEhHHHHhhhhh
Confidence 678888888888887652 34789999999999999999999876221 2222222211110 01
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccCCC---CCCCeE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLDRL---LPESRI 190 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~---~~~~~i 190 (381)
......+.++ ......++.+|+||+++.. .....++..+... ..+..|
T Consensus 89 ~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 89 ESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp SCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred HHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 1111111111 1122357889999999654 1223343333221 233445
Q ss_pred EEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 040862 191 LITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILGC 248 (381)
Q Consensus 191 liTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 248 (381)
|.||.... ++..+.++-.+++...+....... .+.....|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55554332 677788888888877664332211 235677888888887 444655544
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.85 E-value=1.7e-07 Score=86.46 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=96.8
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCC-C
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKP-G 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++..... ++..+........ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~~~g 126 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSKWMG 126 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSCC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhhhcc
Confidence 689999999999998762 24568999999999999999999877432 2222222111100 0
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh-------------hHHHHHhccC---CCCCCCeE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN-------------QIESLVGSLD---RLLPESRI 190 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~~~---~~~~~~~i 190 (381)
........+ +.......+.+|+||+++... ....++..+. ....+..|
T Consensus 127 ~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 127 ESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp -CHHHHHHH----------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred hHHHHHHHH----------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 001111111 111223578999999996432 1333333322 11234455
Q ss_pred EEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 040862 191 LITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGC 248 (381)
Q Consensus 191 liTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~ 248 (381)
|.||.... ++..+.++-.+++...+....... .....+.|++.+.| .+-.|..+..
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55665442 777888888888887764332211 13567788889988 4555655544
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.84 E-value=1.6e-07 Score=86.78 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=98.2
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.++..... .++..+..........
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~~g 159 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTSKWVG 159 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCCSSTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhccccc
Confidence 679999999999988763 4678999999999999999999987632 2333333322111111
Q ss_pred -hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccCC----CCCCCe
Q 040862 128 -LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLDR----LLPESR 189 (381)
Q Consensus 128 -~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~----~~~~~~ 189 (381)
.......+ +.......+.+|+||+++.. .....++..+.. ...+..
T Consensus 160 ~~~~~~~~~----------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 160 EGEKMVRAL----------------FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp HHHHHHHHH----------------HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred hHHHHHHHH----------------HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 11111111 11122346789999999432 123334333321 123345
Q ss_pred EEEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHHH
Q 040862 190 ILITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGCY 249 (381)
Q Consensus 190 iliTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~~~~~ 249 (381)
||.||.... ++..+.++..+++...+......- .++.++.+++.+.| .+..|..++..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 555664432 777788888888877663322111 23567888888888 55566655543
No 34
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.84 E-value=5e-08 Score=92.53 Aligned_cols=162 Identities=16% Similarity=0.236 Sum_probs=99.6
Q ss_pred CcccchhhHH---HHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHH
Q 040862 62 NELVGVESRV---EEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLL 136 (381)
Q Consensus 62 ~~~vGR~~~l---~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~ 136 (381)
.+++|.+..+ ..|...+. ..+.+.|+|++|+||||||+.+++.....|. ..+.. ......+. .++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a~-----~~~~~~ir-~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE----RISAV-----TSGVKEIR-EAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEETT-----TCCHHHHH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEec-----cCCHHHHH-HHH
Confidence 6799999888 77777777 4457999999999999999999987654321 11111 22222221 111
Q ss_pred HHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEe-cccc---------------
Q 040862 137 SEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITT-RNKQ--------------- 198 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTs-r~~~--------------- 198 (381)
.... ......++.+|+||+++... ..+.|+..+.. ....+|.+| .+..
T Consensus 96 ~~a~------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~ 161 (447)
T 3pvs_A 96 ERAR------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYL 161 (447)
T ss_dssp HHHH------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEE
T ss_pred HHHH------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEe
Confidence 1110 11123577899999997543 34444444432 334455444 3332
Q ss_pred CCCCCHHHHHHHHHHhhccCC-----CCChhHHHHHHHHHHHhCCChHHHHHHH
Q 040862 199 MKGFGDDHALELFNRHAFRQN-----LVDVDYKELSDKVINYAQGVPLALKILG 247 (381)
Q Consensus 199 l~~L~~~ea~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~~~ 247 (381)
+++++.++..+++.+.+.... ......++..+.+++.++|++..+..+.
T Consensus 162 l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 162 LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 899999999999988764311 1112235678889999999987665433
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.84 E-value=7.1e-08 Score=89.45 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=102.0
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
+.|+|++..++.+..+.. ..+.+.|+|++|+|||+||+.+++.+....+. +....................
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF--TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE--EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc--ccccchhhhhcccchhHHHHH
Confidence 579999999877555442 23589999999999999999999987643221 112222211112222333333
Q ss_pred HHHHHhcc----------------------C---CCCCC-----HHHHHHH---------hCCC----eEEEEEeCCCCh
Q 040862 135 LLSEVLKD----------------------V---NVIPH-----IDLNFRR---------LSRR----KVLIVLDDVTCF 171 (381)
Q Consensus 135 l~~~~~~~----------------------~---~~~~~-----~~~l~~~---------l~~~----~~LlvlDdv~~~ 171 (381)
.+...... . ..... ...+... ..++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221100 0 00000 1111111 1122 469999999754
Q ss_pred --hhHHHHHhccCCCCCCCeEEEEecc------------cc--------------CCCCCHHHHHHHHHHhhccCCCCCh
Q 040862 172 --NQIESLVGSLDRLLPESRILITTRN------------KQ--------------MKGFGDDHALELFNRHAFRQNLVDV 223 (381)
Q Consensus 172 --~~~~~l~~~~~~~~~~~~iliTsr~------------~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~ 223 (381)
+....+...+...... .+++++.. .. +++++.++..+++...+......
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~-- 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE-- 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC--
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC--
Confidence 3445555544432222 34444431 10 88999999999998777543322
Q ss_pred hHHHHHHHHHHHhC-CChHHHHHHHH
Q 040862 224 DYKELSDKVINYAQ-GVPLALKILGC 248 (381)
Q Consensus 224 ~~~~~~~~i~~~~~-G~PLal~~~~~ 248 (381)
..++.++.+++.+. |+|..+..+..
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 23467888999998 88876655443
No 36
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.81 E-value=2.4e-07 Score=83.18 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=94.3
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||++|+.++...... ++..+....... ..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLTSKYVG 96 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTSSSSCS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHhhcccc
Confidence 689999999999988762 35789999999999999999999876432 222222211110 11
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhcc---CCC--CCCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSL---DRL--LPES 188 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~---~~~--~~~~ 188 (381)
......+.+ +.......+.+|+||+++.. .....++..+ ... +.+.
T Consensus 97 ~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 97 DGEKLVRAL----------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp CHHHHHHHH----------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred hHHHHHHHH----------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 111111111 11122346789999999542 1122232222 111 1234
Q ss_pred eEEEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH-HHHHHHH
Q 040862 189 RILITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILGC 248 (381)
Q Consensus 189 ~iliTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~~ 248 (381)
.||.||.... ++..+.++-..++...+....... ..+....+++.+.|++- .|..+..
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566665432 666777777787776653322111 23567788888888875 5544443
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.81 E-value=2.3e-07 Score=86.75 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=93.7
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccC-CC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQK-PG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.++..... .++..+....... ..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~~~g 190 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSKYVG 190 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhccccc
Confidence 689999999999998872 3578999999999999999999887543 2333322221110 00
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccC---C-CCCCCe
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLD---R-LLPESR 189 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~---~-~~~~~~ 189 (381)
........+ +.......+.+|+||+++.. .....++..+. . ......
T Consensus 191 ~~~~~~~~~----------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 191 EGEKLVRAL----------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -CHHHHHHH----------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred hHHHHHHHH----------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 001111111 11122246689999999643 11222322221 1 122345
Q ss_pred EEEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 040862 190 ILITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILG 247 (381)
Q Consensus 190 iliTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~~~ 247 (381)
||.||.... ++..+.++-.+++...+....... ..+.+..+++.+.|..- .|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555665432 777888888888877764332221 23567788888887544 554444
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.79 E-value=6.2e-08 Score=91.95 Aligned_cols=170 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred Cccc-chhhHH--HHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELV-GVESRV--EEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~v-GR~~~l--~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
+.|+ |....+ ..+...... ...+.|+|++|+||||||+.+++.+...++ ..+.+.+.. .+...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----------~~~~~ 174 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE----------KFLND 174 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----------HHHHH
Confidence 5676 655443 233333332 568999999999999999999998755542 223333222 12223
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh----hHHHHHhccCC-CCCCCeEEEEecccc-----------
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN----QIESLVGSLDR-LLPESRILITTRNKQ----------- 198 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsr~~~----------- 198 (381)
+...+.. .....+...+...+.+|+|||++... ..+.++..+.. ...+..||+||....
T Consensus 175 ~~~~~~~-----~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 175 LVDSMKE-----GKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHHHHHT-----TCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHHHHHc-----ccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 3222221 12334455555467799999995322 23333332211 134677888887632
Q ss_pred ----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 040862 199 ----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 248 (381)
Q Consensus 199 ----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~ 248 (381)
+++++.++..+++.+.+......- .++.++.|++.+.|++.-+.-+..
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 778888888888887764222111 124577788888998876654433
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.77 E-value=1.2e-07 Score=85.76 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=81.1
Q ss_pred cccchhhHHHHHHHhhC-----------------CCcEEEEecCCCCchhHHHHHHHhhhcccc---cceEEEEeccccc
Q 040862 63 ELVGVESRVEEIESLLG-----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF---EGSCFLENVREES 122 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~-----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~ 122 (381)
.++|.+...+.|.+.+. ....+.|+|++|+|||++|+.+++.+.... ...+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 68888888888876542 344699999999999999999988764321 1122222222211
Q ss_pred cCCCC-hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCC-----------ChhhHHHHHhccCCCCCCCeE
Q 040862 123 QKPGG-LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVT-----------CFNQIESLVGSLDRLLPESRI 190 (381)
Q Consensus 123 ~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~-----------~~~~~~~l~~~~~~~~~~~~i 190 (381)
....+ .... ...+.... .+.+|+||+++ ..+....++..+.....+..+
T Consensus 112 ~~~~g~~~~~-----------------~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAPK-----------------TKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHHHH-----------------HHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccHHH-----------------HHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 10000 0000 01111111 34599999997 334455555555444456777
Q ss_pred EEEeccc----------c----------CCCCCHHHHHHHHHHhhcc
Q 040862 191 LITTRNK----------Q----------MKGFGDDHALELFNRHAFR 217 (381)
Q Consensus 191 liTsr~~----------~----------l~~L~~~ea~~l~~~~~~~ 217 (381)
|+||... . +++++.++..+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7777432 1 7888888888888777643
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.77 E-value=1.9e-07 Score=84.98 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=97.0
Q ss_pred CcccchhhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.+++|++..++.|.+++. .++++.++|++|+|||++|+.+++.+.. .++..+.. ..... .....+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~~~-----~~~~~-~i~~~~~~ 95 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVNGS-----DCKID-FVRGPLTN 95 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEETT-----TCCHH-HHHTHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEccc-----ccCHH-HHHHHHHH
Confidence 689999999999999987 3467888899999999999999987632 22222221 12222 22222222
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh---hHHHHHhccCCCCCCCeEEEEecccc--------------CCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN---QIESLVGSLDRLLPESRILITTRNKQ--------------MKG 201 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~ 201 (381)
...... ..+.+.+|+||+++... ....+...+.....++++|+||.... +++
T Consensus 96 ~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~ 164 (324)
T 3u61_B 96 FASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQ 164 (324)
T ss_dssp HHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCC
T ss_pred HHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCC
Confidence 111100 12367899999998654 34444444433335678888876644 778
Q ss_pred CCHHHHHHHH-------HHhhccCCCCChhHHHHHHHHHHHhCCChHHHH
Q 040862 202 FGDDHALELF-------NRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 244 (381)
Q Consensus 202 L~~~ea~~l~-------~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 244 (381)
++.++-.+++ ...+......- ...+.++.+++.++|++..+.
T Consensus 165 ~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 165 PTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHH
Confidence 8887743332 22222111111 112667788888988876543
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=8.4e-08 Score=87.78 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=130.5
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
..++|.+..++.+...+. ....++|+|++|+||||||+.++..+...+. ..... . .....++. .
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg~-~---~~~~~~l~-~ 95 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSGP-V---LVKQGDMA-A 95 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEETT-T---CCSHHHHH-H
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEech-H---hcCHHHHH-H
Confidence 578899888888877665 2367999999999999999999987743321 11111 0 11111111 1
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCC--------C----------CCCeEEE-E
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRL--------L----------PESRILI-T 193 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~--------~----------~~~~ili-T 193 (381)
+...+ .++.++++|+++... ..+.+...+... + +...++- |
T Consensus 96 -----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 96 -----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp -----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred -----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 11111 234477889885431 222222111100 0 1122332 3
Q ss_pred ecccc--------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHHHHHhccCCHHHHH
Q 040862 194 TRNKQ--------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKREVWE 259 (381)
Q Consensus 194 sr~~~--------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~~~~l~~~~~~~~~ 259 (381)
++... +++.+.++..+++.+.+...... ...+.+..|++.+.|.|..+..+...+.. .
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~-----~- 229 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRD-----M- 229 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHH-----H-
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHH-----H-
Confidence 33221 89999999999998776432221 22467889999999999765444333210 0
Q ss_pred HHHHHHHh--ccc-ccHHHHHH---hhhcCCChhhhhhhhhhhc-c-cCCcCHHHHHHHHHHcCCChhhhHH-HHhhCCc
Q 040862 260 NAIKKLKN--FLH-QNILDVLK---ISYDGLDNDEKNIFLDVAC-F-FKGEDVYLAKKFLEASGFYPEIGIS-ILVDKSL 330 (381)
Q Consensus 260 ~~~~~l~~--~~~-~~~~~~l~---~~~~~L~~~~~~~l~~la~-~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~L 330 (381)
..... ... ..+..++. ..-..++...+.++..++- | ..++....+....+.+....++..+ .|...|+
T Consensus 230 ---a~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~ 306 (334)
T 1in4_A 230 ---LTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGF 306 (334)
T ss_dssp ---HHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTS
T ss_pred ---HHHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 00000 011 11222222 1123456666666665543 3 2335556655554332111222333 7999999
Q ss_pred eeEcCCCcEEecH
Q 040862 331 IAINPYNKITMHD 343 (381)
Q Consensus 331 i~~~~~~~~~~H~ 343 (381)
|+....|+.....
T Consensus 307 i~~~~~gr~~~~~ 319 (334)
T 1in4_A 307 LARTPRGRIVTEK 319 (334)
T ss_dssp EEEETTEEEECHH
T ss_pred eecccccHHhhHH
Confidence 9998888875543
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.75 E-value=5.3e-07 Score=85.65 Aligned_cols=166 Identities=12% Similarity=0.099 Sum_probs=98.9
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
..++|.+...+.|.+.+. ..+.+.|+|++|+|||+||+.++..... ..++..+....
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l------ 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDL------ 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHH------
Confidence 789999999999988762 3578999999999999999999987621 12222222111
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHHHHHH-hCCCeEEEEEeCCCCh-------------hhHHHHHhccCCC---CCCCeE
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDLNFRR-LSRRKVLIVLDDVTCF-------------NQIESLVGSLDRL---LPESRI 190 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~---~~~~~i 190 (381)
. .... ......+..+... ....+.+|+||+++.. .....++..+... ..+..|
T Consensus 205 ----~----~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 205 ----V----SKWL--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp -----------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred ----H----hhhc--chHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 0 0000 1112233333332 2357889999999754 2244555554432 234556
Q ss_pred EEEecccc---------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 040862 191 LITTRNKQ---------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILGC 248 (381)
Q Consensus 191 liTsr~~~---------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~~~ 248 (381)
|.||.... ++..+.++-..++...+....... .......|++.+.|. +-.|..+..
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665432 667778888888877664322111 235677888888884 545555443
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.73 E-value=4.3e-08 Score=81.33 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=41.1
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..|+||+.+++.+.+.+. ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999987 4678899999999999999999987644
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.9e-07 Score=84.15 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=93.4
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+...++|.+.+. .++-+.++||||+|||.||+.++...... ++............
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK----FIRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE----EEEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC----ceEEEhHHhhcccc
Confidence 778899999999988653 46789999999999999999999976543 23333322211111
Q ss_pred -ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCCC--CC
Q 040862 127 -GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRLL--PE 187 (381)
Q Consensus 127 -~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~ 187 (381)
......+.+ +..+-...|++|+||+++.. ..+..++..+.... .+
T Consensus 224 Gese~~vr~l----------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 224 GEGSRMVREL----------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp THHHHHHHHH----------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred chHHHHHHHH----------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 111112221 12223467999999999531 12344554444322 33
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++..+.++-.++|+.+......... -....+++.|.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 34555664433 6667788888888766633222211 12567788888754
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=5.2e-07 Score=79.94 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHHh-------h----C-CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESL-------L----G-AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~-------l----~-~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|....++.+... + . ..+.+.|+|++|+|||+||+.+++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567777666555552 2 1 467899999999999999999998753
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.65 E-value=9.6e-08 Score=76.18 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=64.9
Q ss_pred cccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 63 ELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
.++|++..++++.+.+. ....|.|+|++|+|||++|+.+++.....-...+ .+...... .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~~~~-~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELTPDN-A------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECCTTT-S-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCCCCc-c-------------
Confidence 68999999999988774 5667899999999999999999886433211122 22322211 1
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh--hHHHHHhccCCCCCCCeEEEEeccc
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN--QIESLVGSLDRLLPESRILITTRNK 197 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~iliTsr~~ 197 (381)
.....+.... ...+|+||+++... ....++..+.....+.++|.||...
T Consensus 66 --------~~~~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --------PQLNDFIALA--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp --------SCHHHHHHHH--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred --------hhhhcHHHHc--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0111111111 22478999996532 3344444443334567888888753
No 47
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=9.1e-07 Score=82.93 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=93.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+...++|.+.+. .++-+.++||||+|||.||+.++...... ++............
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhccccc
Confidence 678899999999888653 46899999999999999999999986543 33333332211111
Q ss_pred C-hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCC
Q 040862 127 G-LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~ 187 (381)
+ .....+.+ +..+-...|++|++|+++.. ..+..++..+... ..+
T Consensus 257 Gese~~ir~~----------------F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 257 GESARIIREM----------------FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp SHHHHHHHHH----------------HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred hHHHHHHHHH----------------HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1 11111111 22233468999999999531 1233455444322 234
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++..+.++-.++|..+......... -....+++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCC
Confidence 45666665443 5666777777888766643221111 11566778887754
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=9.1e-07 Score=81.08 Aligned_cols=165 Identities=14% Similarity=0.247 Sum_probs=99.4
Q ss_pred CcccchhhHHHHHHHhhCCCcE--EEEecCCCCchhHHHHHHHhhhccc-ccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 62 NELVGVESRVEEIESLLGAAPL--LGIWGIGGIGKTTIARVIFNRISRN-FEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~--v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
..++|.+..++.|...+...++ +.++|++|+||||+|+.++..+... +...+.-.+... ......+ +.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~~~~~i-r~~i~~ 99 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DRGIDVV-RNQIKD 99 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CCSHHHH-HTHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cccHHHH-HHHHHH
Confidence 5678999999999988884444 8999999999999999999876432 222222222211 1222222 122222
Q ss_pred HhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------------CCCC
Q 040862 139 VLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ--------------MKGF 202 (381)
Q Consensus 139 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~--------------l~~L 202 (381)
+...... ..+.+-++|+|+++.. .....++..+......+.++++|.... +.++
T Consensus 100 ~~~~~~~----------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l 169 (340)
T 1sxj_C 100 FASTRQI----------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 169 (340)
T ss_dssp HHHBCCS----------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred HHhhccc----------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCC
Confidence 1111000 1134678999998643 334444444333345566777665432 7889
Q ss_pred CHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHH
Q 040862 203 GDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 243 (381)
Q Consensus 203 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal 243 (381)
+.++..+.+...+...... ..++..+.+++.++|.+--+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 9999998888766332211 12456788999999998754
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.59 E-value=1.3e-06 Score=79.37 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=92.0
Q ss_pred Cccc-chhhH--HHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHH
Q 040862 62 NELV-GVESR--VEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQK 134 (381)
Q Consensus 62 ~~~v-GR~~~--l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (381)
+.|+ |.... ...+..... ..+.+.|+|++|+|||+||+.+++..... ...+.+.+.. .+...
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~----------~~~~~ 79 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSAD----------DFAQA 79 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHH----------HHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHH----------HHHHH
Confidence 4565 53332 333444443 24689999999999999999999877543 2223333222 12222
Q ss_pred HHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCChh----hHHHHHhccCC-CCCCCeEEEEecccc-----------
Q 040862 135 LLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCFN----QIESLVGSLDR-LLPESRILITTRNKQ----------- 198 (381)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~l~~~~~~-~~~~~~iliTsr~~~----------- 198 (381)
+...+.. .....+..... .+.+|+||+++... ....+...+.. ...+..+|+|+....
T Consensus 80 ~~~~~~~-----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 80 MVEHLKK-----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHHHHHH-----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHHHHHc-----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 2222211 12223333332 36799999995432 22222222211 124567888876432
Q ss_pred ----------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ----------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ----------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++ +.++..+++...+......- .++..+.+++.+ |++-.+..+
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHHHHHH
Confidence 778 89999998887764333221 246678888888 887655443
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1e-06 Score=82.59 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=92.8
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+...++|.+.+. .++-|.++||||+|||.||+.++...... ++............
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhccc
Confidence 778999999999987642 47889999999999999999999876543 33333332221111
Q ss_pred C-hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCCC--CC
Q 040862 127 G-LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRLL--PE 187 (381)
Q Consensus 127 ~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~ 187 (381)
+ .....+.++ ..+-...|++|++|+++.. ..+..++..+.... .+
T Consensus 257 Gese~~ir~lF----------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 257 GEGAKLVRDAF----------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp SHHHHHHHHHH----------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred chHHHHHHHHH----------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 1 111222221 1122347899999999421 12334555554333 23
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++..+.++-.++|+.+......... -..+.|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---vdl~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD---INWQELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC---CCHHHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCC
Confidence 34555665443 6667778888888766533221111 11566788887753
No 51
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.56 E-value=2.2e-06 Score=78.25 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=94.4
Q ss_pred hhHHHHHHHhhC---CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--
Q 040862 68 ESRVEEIESLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD-- 142 (381)
Q Consensus 68 ~~~l~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-- 142 (381)
+...+.|...+. -++.+.++|++|+|||++|+.+++.+........ . ..+....+..+......+
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~------~----~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH------K----SCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT------B----CCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC------C----CCCCCHHHHHHhcCCCCCEE
Confidence 344556666655 2457999999999999999999987643211000 0 000000011110000000
Q ss_pred --C----CCCCCHH---HHHHHh-----CCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc--------
Q 040862 143 --V----NVIPHID---LNFRRL-----SRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ-------- 198 (381)
Q Consensus 143 --~----~~~~~~~---~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~-------- 198 (381)
. .....++ .+.+.+ .+++-++|+|+++.. +....++..+....+++.+|++|.+..
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 0 0001111 122222 245679999999754 345666666665556677777766553
Q ss_pred ------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 199 ------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 199 ------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
+++++.++..+++.... .. .++.+..+++.++|.|..+..+
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 88999999999998775 11 1356788999999999766443
No 52
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=9.8e-07 Score=81.83 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=91.5
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+...++|.+.+. .++-|.++||||+|||.||++++...... ++............
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~----fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT----FLRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE----EEEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC----EEEEEHHHhhhccC
Confidence 778899999999988653 46889999999999999999999986543 22333322211111
Q ss_pred -ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCCC--CC
Q 040862 127 -GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRLL--PE 187 (381)
Q Consensus 127 -~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~ 187 (381)
......+.++ ..+-...|++|+||+++.. ..+..++..+.... .+
T Consensus 258 Gesek~ir~lF----------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 258 GDGPRLCRQIF----------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp SHHHHHHHHHH----------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred chHHHHHHHHH----------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 1111222221 2222357899999998521 12334444433222 33
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++.-+.++-.++|..++....... + -..+.+++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~-d--vdl~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSE-D--VNLETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCS-C--CCHHHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCC-c--CCHHHHHHhCCCCC
Confidence 34555654433 556677777888876664322111 1 11566777887754
No 53
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=9.2e-07 Score=82.75 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+.|-+...++|.+.+. .++-+.++||||+|||.||+.+++....
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999888653 4678999999999999999999987754
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.2e-06 Score=80.30 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=91.5
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+...++|.+.+. .++-|.++||||+|||.||+.++.+.... ++............
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~----fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT----FIRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC----eEEEEhHHhhcccC
Confidence 678999999999987642 57899999999999999999999987543 23333322211111
Q ss_pred C-hHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCCC--CC
Q 040862 127 G-LASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRLL--PE 187 (381)
Q Consensus 127 ~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~~--~~ 187 (381)
+ .....+.+ +..+-...+++|++|+++.. ..+..++..+.... .+
T Consensus 285 Gesek~ir~l----------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 285 GEGARMVREL----------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SHHHHHHHHH----------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CHHHHHHHHH----------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1 11111111 22233467999999999531 11233444333222 23
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
..||.||.... ++..+.++-.++|+.++....... + -..+.|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-d--vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-G--IRWELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-S--CCHHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-C--CCHHHHHHHCCCCC
Confidence 34455554332 666677888888876663322111 1 11566778887754
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.54 E-value=7.7e-07 Score=85.14 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=75.7
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccc------cceEEEEeccccccCCCChHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------EGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
+.++||+.+++.+...+. ....+.|+|++|+|||++|+.++..+.... ...++..+..
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------------
Confidence 679999999999999985 566789999999999999999999864321 1122222111
Q ss_pred HHHHHHhccCCCCCCHHHHHH-HhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc--------------
Q 040862 134 KLLSEVLKDVNVIPHIDLNFR-RLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ-------------- 198 (381)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~-------------- 198 (381)
... .......+..+.. .....+.+|++| ...+....+...+. ....++|.+|....
T Consensus 246 ---~~~--~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~R 316 (468)
T 3pxg_A 246 ---TKY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ---ccc--cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHh
Confidence 000 0111223333333 223567899999 22222233333332 23455665554332
Q ss_pred -----CCCCCHHHHHHHHHHhh
Q 040862 199 -----MKGFGDDHALELFNRHA 215 (381)
Q Consensus 199 -----l~~L~~~ea~~l~~~~~ 215 (381)
+++.+.++..+++....
T Consensus 317 f~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 317 FQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEEEECCCCCHHHHHHHHHHTT
T ss_pred CccceeCCCCHHHHHHHHHHHH
Confidence 77788888888887654
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.48 E-value=1e-06 Score=79.33 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=91.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.++...... ++..+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~-------- 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-------- 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECH--------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEh--------
Confidence 578899988888887652 45789999999999999999999876422 222211
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCChh----------------hHHHHHhccCCC--CCC
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCFN----------------QIESLVGSLDRL--LPE 187 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~--~~~ 187 (381)
.++. ....+. ....+.. +.......+.+|+||+++... ....++..+... ..+
T Consensus 83 --~~l~----~~~~g~--~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 83 --PELL----TMWFGE--SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp --HHHH----HHHHTT--CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred --HHHH----hhhcCc--hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1111 111111 1122222 223334578999999996421 123444433221 234
Q ss_pred CeEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChHH
Q 040862 188 SRILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPLA 242 (381)
Q Consensus 188 ~~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 242 (381)
..||.||.... ++..+.++-.+++...+........ .....+...+.|+|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 46666665432 6677788888888766633221111 1134566677777654
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=1.6e-06 Score=76.01 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+..++.+.+.+. ..+.+.|+|++|+|||+||+.++....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578888888777766532 255789999999999999999998764
No 58
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.47 E-value=1.2e-06 Score=78.94 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHhhC----------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|++..++.+...+. ..+.+.|+|++|+|||++|+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 468888888888876653 256789999999999999999998763
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.46 E-value=5.5e-07 Score=92.63 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=40.1
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++||+.++..+...+. ..+.++|+|++|+|||+||+.+++.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 679999999999999887 455789999999999999999999764
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.42 E-value=7.3e-07 Score=73.73 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=61.2
Q ss_pred hhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHHh
Q 040862 67 VESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEVL 140 (381)
Q Consensus 67 R~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 140 (381)
+...++.+.+++. .+..+.|+|++|+|||||++.++..+..... .+.++. . .++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~----------~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-T----------KDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-H----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHhc
Confidence 4455555555543 5688999999999999999999987752222 222322 1 223333322222
Q ss_pred ccCCCCCCHHHHHHHhCCCeEEEEEeCCCC--hh-----hHHHHHhccCCCCCCCeEEEEeccc
Q 040862 141 KDVNVIPHIDLNFRRLSRRKVLIVLDDVTC--FN-----QIESLVGSLDRLLPESRILITTRNK 197 (381)
Q Consensus 141 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~-----~~~~l~~~~~~~~~~~~iliTsr~~ 197 (381)
.... . .+...+. ++-+||||+++. .+ .+..++.... ..+..+|+||...
T Consensus 88 ~~~~-~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 88 EGKD-T----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYS 143 (180)
T ss_dssp HTCC-S----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCC
T ss_pred CchH-H----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 2111 1 2223333 456899999962 22 2222222221 2467788888754
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.38 E-value=3.1e-06 Score=81.08 Aligned_cols=163 Identities=20% Similarity=0.232 Sum_probs=92.0
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..++|.+..+++|.+.+. ..+.+.|+|++|+|||++|+.+++.... .++..+.........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 578999999999988763 3567999999999999999999887632 233333322221010
Q ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccCC--CCCCCeEE
Q 040862 127 GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLDR--LLPESRIL 191 (381)
Q Consensus 127 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~--~~~~~~il 191 (381)
......+ ...+.....+.+.+|+||+++.. .....|+..+.. ...+..||
T Consensus 280 --g~~~~~~-------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 280 --GESESNL-------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp --THHHHHH-------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred --chhHHHH-------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 0000000 01123333467889999999311 122333333321 12344556
Q ss_pred EEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCC-hHHHHHH
Q 040862 192 ITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKIL 246 (381)
Q Consensus 192 iTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 246 (381)
.||.... ++..+.++-.+++...+........ .....+...+.|. +-.|..+
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 5665442 6677888888888776633221111 1245566666664 4444433
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.36 E-value=5.7e-06 Score=84.12 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=82.3
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc------ccceEEEEecccccc---CCCChHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN------FEGSCFLENVREESQ---KPGGLAS 130 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~~~~~~~ 130 (381)
..++||+.+++.+.+.+. ....+.|+|++|+|||++|+.++..+... ....++..+...... ....+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~ 265 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHH
Confidence 679999999999999988 56788999999999999999999876322 122333332221110 0111111
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHhC-CCeEEEEEeCCCCh----------hhHHHHHhccCCCCCCCeEEEEecccc-
Q 040862 131 LQQKLLSEVLKDVNVIPHIDLNFRRLS-RRKVLIVLDDVTCF----------NQIESLVGSLDRLLPESRILITTRNKQ- 198 (381)
Q Consensus 131 l~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----------~~~~~l~~~~~~~~~~~~iliTsr~~~- 198 (381)
.. ..+...+. .++.+|+||+++.. .....++..+.. .....+|.+|....
T Consensus 266 ~l-----------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 266 RF-----------------KALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_dssp HH-----------------HHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHH
T ss_pred HH-----------------HHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHH
Confidence 11 12222222 35789999999754 222333333332 23455555554310
Q ss_pred ------------------CCCCCHHHHHHHHHHhh
Q 040862 199 ------------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 199 ------------------l~~L~~~ea~~l~~~~~ 215 (381)
+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 78888999888887554
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.33 E-value=4.2e-06 Score=85.03 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=77.2
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcccc------cceEEEEeccccccCCCChHHHHH
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------EGSCFLENVREESQKPGGLASLQQ 133 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~ 133 (381)
..++||+.+++.+...+. ....+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 679999999999999986 566789999999999999999998763321 112222111
Q ss_pred HHHHHHhccCCCCCCHHHHHH-HhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc--------------
Q 040862 134 KLLSEVLKDVNVIPHIDLNFR-RLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ-------------- 198 (381)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~-------------- 198 (381)
.... .......+..+.. .....+.+|++| ...+....+...+. ....++|.||....
T Consensus 245 --g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 --GTKY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred --cccc--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 0000 0112233333332 334678899999 22222333333332 23455665554322
Q ss_pred -----CCCCCHHHHHHHHHHhh
Q 040862 199 -----MKGFGDDHALELFNRHA 215 (381)
Q Consensus 199 -----l~~L~~~ea~~l~~~~~ 215 (381)
+++.+.++..+++....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHH
Confidence 78889999999998654
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.33 E-value=1.5e-05 Score=75.82 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=88.2
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCC
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGG 127 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 127 (381)
..++|.+..++++.+... -++-+.|+|++|+|||+||+.++...... ++..+..........
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVELFVG 91 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTCCTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHHHhc
Confidence 568888888777776543 24568999999999999999999876432 222333222111111
Q ss_pred hHHHHHHHHHHHhccCCCCCCHHH-HHHHhCCCeEEEEEeCCCCh----------------hhHHHHHhccCCC--CCCC
Q 040862 128 LASLQQKLLSEVLKDVNVIPHIDL-NFRRLSRRKVLIVLDDVTCF----------------NQIESLVGSLDRL--LPES 188 (381)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~----------------~~~~~l~~~~~~~--~~~~ 188 (381)
.. .. .... +.....+.+.+|+||+++.. ..+..++..+... ..+.
T Consensus 92 ~~---~~-------------~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 92 VG---AA-------------RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp HH---HH-------------HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred cc---HH-------------HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00 00 0111 33344467899999999532 1234444333211 2344
Q ss_pred eEEEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCCh
Q 040862 189 RILITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVP 240 (381)
Q Consensus 189 ~iliTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 240 (381)
.||.||.... +++.+.++-.+++...+........ .....+.+.+.|+.
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCc
Confidence 5566665442 5566777777777766533222111 11455778888877
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.30 E-value=2.5e-06 Score=76.93 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=38.7
Q ss_pred CcccchhhHHHHHHHhhCC-----------CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGA-----------APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~-----------~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..++.+...+.. ...+.|+|++|+|||++|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4788999999988887761 257999999999999999999987644
No 66
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.30 E-value=4.4e-07 Score=72.11 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=35.0
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
-.++|++..++++.+.+. ....|.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 367999999998888765 566789999999999999999877543
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.29 E-value=8.8e-06 Score=73.19 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|++..++.+.+.+. ....|.|+|++|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 468999999999888765 567889999999999999999988643
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.24 E-value=2.8e-06 Score=71.54 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=36.4
Q ss_pred Ccccchh----hHHHHHHHhhCCC------cEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 62 NELVGVE----SRVEEIESLLGAA------PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 62 ~~~vGR~----~~l~~l~~~l~~~------~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
+.|++.+ ..++.+.+++... +.+.|+|++|+|||+||+.++..........+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4566544 2344445554411 7899999999999999999999876553334443
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.23 E-value=9.8e-06 Score=71.32 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..|+|.+..+..+.+.+. ....+.|+|++|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 468999998888776554 567889999999999999999998654
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.21 E-value=5.4e-06 Score=83.44 Aligned_cols=157 Identities=21% Similarity=0.239 Sum_probs=90.4
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCC
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPG 126 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 126 (381)
..+.|-+..+++|.+.+. .++-|.++||+|+|||+||+.++.+.... ++..+.........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 568889988888888653 46789999999999999999999876543 33333322211010
Q ss_pred -ChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh-------------hhHHHHHhccCCCC--CCCeE
Q 040862 127 -GLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF-------------NQIESLVGSLDRLL--PESRI 190 (381)
Q Consensus 127 -~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~~~~l~~~~~~~~--~~~~i 190 (381)
......+.+ +..+....+++|+||+++.. .....++..+.... .+..|
T Consensus 280 gese~~lr~l----------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 280 GESESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp THHHHHHHHH----------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred hHHHHHHHHH----------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 011111111 23344578999999999431 12333333332211 23344
Q ss_pred EEEecccc-----------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhCCChH
Q 040862 191 LITTRNKQ-----------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYAQGVPL 241 (381)
Q Consensus 191 liTsr~~~-----------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 241 (381)
|.||.... ++..+.++=.++++.+........ + -....+++.+.|..-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-d--vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-D--VDLEQVANETHGHVG 408 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-T--CCHHHHHHHCCSCCH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-c--cCHHHHHHhcCCCCH
Confidence 55554332 566677777788876653322111 1 125668888887643
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.15 E-value=1.7e-06 Score=76.32 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..++.+.+.+. ..+.+.|+|++|+|||+||+.++.....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 678999988888877654 2456889999999999999999987644
No 72
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.03 E-value=5.2e-05 Score=66.14 Aligned_cols=45 Identities=24% Similarity=0.413 Sum_probs=33.6
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++|.+....++.+... -.+-++|+|++|+|||||++.++....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 567777766666655432 134489999999999999999998764
No 73
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.03 E-value=0.00011 Score=65.04 Aligned_cols=45 Identities=24% Similarity=0.413 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++++|.+....++.+... -.+-++|+|++|+|||||++.++....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 678888887777766542 123489999999999999999998764
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.02 E-value=0.00016 Score=70.37 Aligned_cols=46 Identities=35% Similarity=0.534 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHhhC--------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|-+...+.+.+.+. ....++|+|++|+||||||+.++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457888887777765433 4678999999999999999999987744
No 75
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.02 E-value=5e-06 Score=66.37 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
....++|+|++|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999987654
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.00 E-value=0.00011 Score=65.69 Aligned_cols=28 Identities=32% Similarity=0.701 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++.+.|+|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678899999999999999999998743
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.97 E-value=2.1e-05 Score=79.95 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHhhC----C-----C--cEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG----A-----A--PLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~-----~--~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..++.+...+. + . ..+.++|++|+|||++|+.+++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999988887765 1 1 16999999999999999999987643
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.93 E-value=0.00016 Score=69.10 Aligned_cols=45 Identities=24% Similarity=0.413 Sum_probs=36.3
Q ss_pred CcccchhhHHHHHHHhhC--------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++|.+..+.++.+... -++-+.|+|++|+|||+||+.++....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999888777776543 134589999999999999999998764
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.87 E-value=3.8e-05 Score=73.16 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhhC-------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.+..++.+..++. .++.+.++|++|+|||+||+.+++.+...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 789999999887666544 34689999999999999999999987643
No 80
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.86 E-value=0.00032 Score=61.88 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=32.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+.|-+...+.|.+.+. -.+-++|+|++|+|||||++.++....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456666666666665432 234499999999999999999998654
No 81
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.84 E-value=2.8e-05 Score=69.95 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=33.9
Q ss_pred Ccccc----hhhHHHHHHHhhCC-----CcEEEEecCCCCchhHHHHHHHhhhc-cc
Q 040862 62 NELVG----VESRVEEIESLLGA-----APLLGIWGIGGIGKTTIARVIFNRIS-RN 108 (381)
Q Consensus 62 ~~~vG----R~~~l~~l~~~l~~-----~~~v~I~G~~GiGKTtLa~~~~~~~~-~~ 108 (381)
..|++ +...++.+.+++.. .+.+.|+|++|+|||+||..+++.+. ..
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~ 180 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK 180 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 45654 33344445555542 57899999999999999999999776 44
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=0.00012 Score=65.73 Aligned_cols=133 Identities=8% Similarity=0.061 Sum_probs=77.8
Q ss_pred chhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhc---ccccceEEEEeccccccCCCChHHHHHHHHHHHh
Q 040862 66 GVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS---RNFEGSCFLENVREESQKPGGLASLQQKLLSEVL 140 (381)
Q Consensus 66 GR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 140 (381)
|-+..++.|...+. +.+...++|++|+|||++|..+++... ..+.....+ +..+ ....... .+.+.....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l-~~~~---~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEI-DPEG---ENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEE-CCSS---SCBCHHH-HHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEE-cCCc---CCCCHHH-HHHHHHHHh
Confidence 44566777777776 345889999999999999999987531 112223332 2211 0122222 222322221
Q ss_pred ccCCCCCCHHHHHHHhCCCeEEEEEeCCCCh--hhHHHHHhccCCCCCCCeEEEEecccc------------CCCCCHHH
Q 040862 141 KDVNVIPHIDLNFRRLSRRKVLIVLDDVTCF--NQIESLVGSLDRLLPESRILITTRNKQ------------MKGFGDDH 206 (381)
Q Consensus 141 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~~~~iliTsr~~~------------l~~L~~~e 206 (381)
... ..+++-++|+|+++.. .....++..+....+.+.+|++|.+.. +++++.++
T Consensus 76 ~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~ 143 (305)
T 2gno_A 76 YSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143 (305)
T ss_dssp SCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred hcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHH
Confidence 110 0134568999999753 345666666655556777777765443 67788888
Q ss_pred HHHHHHHhh
Q 040862 207 ALELFNRHA 215 (381)
Q Consensus 207 a~~l~~~~~ 215 (381)
..+.+.+..
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887665
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=9.7e-05 Score=75.24 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+..+++|.+++. ....++|+|++|+||||||+.++.....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 678999999999888763 4568999999999999999999987643
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.53 E-value=0.00015 Score=72.99 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+.|.+...++|.+.+. .++-+.++||||+|||.||+.++.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 667888888888887654 3567899999999999999999987653
No 85
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.43 E-value=0.00019 Score=59.29 Aligned_cols=124 Identities=13% Similarity=-0.008 Sum_probs=58.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCCe
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRRK 160 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 160 (381)
..+++|+|++|+||||++..++.+....-..+.++....+. ..+...+...+ ..............+...+.+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~---r~~~~~i~s~~--g~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS---RYHSTMIVSHS--GNGVEAHVIERPEEMRKYIEEDT 77 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--------CCCEECC------CEECEEESSGGGGGGGCCTTE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc---ccCcccEEecC--CCceeeEEECCHHHHHHHhcCCC
Confidence 46889999999999999988887654332223333211100 00000000000 00000011122333444444456
Q ss_pred EEEEEeCCCCh-hhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHHHHHHH
Q 040862 161 VLIVLDDVTCF-NQIESLVGSLDRLLPESRILITTRNKQMKGFGDDHALELF 211 (381)
Q Consensus 161 ~LlvlDdv~~~-~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~ea~~l~ 211 (381)
-+|++|++... ..+..++..+. ..+..|++|.+......=..+....|+
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~--~~~~~Vi~~Gl~~~f~~~~f~~~~~ll 127 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLL--DRGIDVFCAGLDLTHKQNPFETTALLL 127 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHH--HTTCEEEEEEESBCTTSCBCHHHHHHH
T ss_pred CEEEEECcccCCHHHHHHHHHHH--HCCCCEEEEeeccccccCCccchHHHH
Confidence 79999998543 22333332222 126789998886542222233444444
No 86
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.41 E-value=0.00083 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
...++.|.|++|+|||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999988
No 87
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.40 E-value=0.00059 Score=69.28 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=36.6
Q ss_pred CcccchhhHHHHHHHhhC----C-------CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----A-------APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~-------~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|.+..++.+...+. + ...+.++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 568899998888877665 1 1268999999999999999999877
No 88
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.34 E-value=9.1e-05 Score=67.32 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=40.5
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|++..++.+...+...+.+.|+|++|+|||+||+.+++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5789999999998888876678999999999999999999987644
No 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.31 E-value=0.00057 Score=70.27 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.9
Q ss_pred cccchhhHHHHHHHhhCC-----------CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 63 ELVGVESRVEEIESLLGA-----------APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~~-----------~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++|.+..++.+...+.. ...+.|+|++|+|||++|+.+++.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999988888777651 147899999999999999999987643
No 90
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.23 E-value=0.00027 Score=58.44 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccC----CC----------
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDV----NV---------- 145 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~---------- 145 (381)
....|.|++..|.||||+|..++-+...+-..+.++...... ...+-..+...+.-.+.... ..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~--~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT--WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS--SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC--CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 356777888888999999999988766554434444433321 02222223322200000000 00
Q ss_pred -CCCHHHHHHHhCC-CeEEEEEeCCCC-----hhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 146 -IPHIDLNFRRLSR-RKVLIVLDDVTC-----FNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 146 -~~~~~~l~~~l~~-~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
...+....+.+.+ +-=|||||++.. .-..+.++..+........||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 0011124445543 445999999822 2223333333333346778999999764
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.22 E-value=0.002 Score=58.91 Aligned_cols=106 Identities=10% Similarity=0.011 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--CCCCCCH-HHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD--VNVIPHI-DLNFRRL 156 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~-~~l~~~l 156 (381)
...+++|.|+.|+|||||++.++..+.......++...- .......... ..+... ....... ..+...+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed-~~e~~~~~~~-------~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED-PIEFVHESKK-------CLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS-------SEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC-cHHhhhhccc-------cceeeeeeccccCCHHHHHHHHh
Confidence 566999999999999999999988664432223322111 0000000000 000000 1111222 2477888
Q ss_pred CCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 157 SRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 157 ~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
...|=+|++|+..+.+.++.+.... ..|..+++|+..
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~ 230 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHT 230 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESC
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEcc
Confidence 8899999999998877666554442 235567777775
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.19 E-value=0.00066 Score=60.61 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..+.+.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999886
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.10 E-value=0.026 Score=51.13 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=91.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc-cccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR-NFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSR 158 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~ 158 (381)
-.++..++|+.|.||++.+..+...+.. .|.....+ .... ..++.++...+... -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SIDP----NTDWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECCT----TCCHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-EecC----CCCHHHHHHHhcCc----------------CCcc
Confidence 4678999999999999999999886542 33321111 1211 24444444333211 1124
Q ss_pred CeEEEEEeCCCC-h--hhHHHHHhccCCCCCCCeEEEEeccc------c--------------CCCCCHHHHHHHHHHhh
Q 040862 159 RKVLIVLDDVTC-F--NQIESLVGSLDRLLPESRILITTRNK------Q--------------MKGFGDDHALELFNRHA 215 (381)
Q Consensus 159 ~~~LlvlDdv~~-~--~~~~~l~~~~~~~~~~~~iliTsr~~------~--------------l~~L~~~ea~~l~~~~~ 215 (381)
.+-++|+|+++. . +..+.+...+....+++.+|+++... . ..+++..+..+.+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 556889999865 3 45666666665555677777665431 1 67889999998888777
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 040862 216 FRQNLVDVDYKELSDKVINYAQGVPLALKIL 246 (381)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 246 (381)
...+.. ..++.++.+++.++|.+..+...
T Consensus 156 ~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 443321 22477888999999999877553
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.07 E-value=0.00028 Score=67.55 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=40.6
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|++..++.+...+.....+.|+|++|+|||+||+.++.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 4789999999998888877788999999999999999999987643
No 95
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.07 E-value=0.00036 Score=57.00 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+.+|.|+|++|+||||+++.++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998764
No 96
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.04 E-value=0.00057 Score=62.92 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=36.6
Q ss_pred cccchhhHHHHHHHhhC-----------------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 63 ELVGVESRVEEIESLLG-----------------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~-----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++|.+..++.+...+. ..+.+.|+|++|+|||++|+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46888888888877761 356789999999999999999998763
No 97
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.99 E-value=0.00035 Score=57.63 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=24.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
|.|+|+||+|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 67899999999999999999887655444
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.93 E-value=0.001 Score=55.64 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhC-----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 67 VESRVEEIESLLG-----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 67 R~~~l~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
|+..++.|.+.+. .+.+++|.|++|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555666555443 457999999999999999999988664
No 99
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.85 E-value=0.0015 Score=61.39 Aligned_cols=37 Identities=22% Similarity=0.517 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
..+.++|+|++|+|||||+..++.....++..++.+.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 4567899999999999999999987665444444333
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.82 E-value=0.00075 Score=56.08 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhhCC---CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 67 VESRVEEIESLLGA---APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 67 R~~~l~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
-..-+..|..++.+ .+.+.|+||||+|||++|..+++.+..
T Consensus 41 ~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33345556665553 347999999999999999999987753
No 101
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.82 E-value=0.00074 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+|+|.|++|+||||+++.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 102
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.77 E-value=0.0022 Score=58.45 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...++.|.|++|+|||||+.+++......-..++|+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyI 95 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFI 95 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 678999999999999999999998765433334454
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00092 Score=54.92 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.++|+|++|+||||+++.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999999998763
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.00097 Score=55.66 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....++|.|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56799999999999999999999876
No 105
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.74 E-value=0.00093 Score=54.80 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999988654
No 106
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.74 E-value=0.0015 Score=60.34 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...+.|+|++|+|||++|+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998773
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.74 E-value=0.00097 Score=55.02 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
+++++|.|++|+|||||++.++......|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 367899999999999999999987654443
No 108
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=96.72 E-value=0.00034 Score=55.90 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=34.1
Q ss_pred CCCcEEEeEeeecCcccccccccchHHHHHHHHhhcHHHHHHHHHHHHH
Q 040862 2 VYAQIAIPVFYRVDPSHVRKQIGSFGVSFSELEEKFPEKMQRWRSALTE 50 (381)
Q Consensus 2 ~~~~~~~pv~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~ 50 (381)
..++.|+||||+++|++|++|.+.|++.|...... ..+.++-..+.+
T Consensus 104 ~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~--~~~~~ia~~l~~ 150 (154)
T 3h16_A 104 SGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST--KSVDEIVADLMA 150 (154)
T ss_dssp TSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT--SCHHHHHHHHHH
T ss_pred cCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc--ccHHHHHHHHHH
Confidence 35678999999999999999999999876554332 225555554443
No 109
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.71 E-value=0.00099 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+++|.||+|+|||||++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5789999999999999999999987643
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.69 E-value=0.0018 Score=54.41 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+|||||++.++..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999999988665
No 111
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.00099 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
+.+++|.|++|+||||+|+.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35789999999999999999987
No 112
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.66 E-value=0.00083 Score=61.26 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=34.8
Q ss_pred CcccchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.+...+.+..... ....+.|+|++|+|||+||+.+++...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 568999886665544332 345699999999999999999998764
No 113
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.65 E-value=0.0016 Score=64.27 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=41.8
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.+..++.+...+.....++|+|++|+||||||+.++..+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 67899999999999888878899999999999999999999876543
No 114
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.64 E-value=0.0011 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++++|+||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999987654
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.0011 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+++|+|++|+||||+++.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999988653
No 116
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.62 E-value=0.0029 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998743
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.62 E-value=0.001 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5678999999999999999999875
No 118
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.61 E-value=0.0013 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.+++|.|++|+||||+++.++..+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987653
No 119
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.0019 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+++|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999987754
No 120
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.60 E-value=0.0017 Score=53.77 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.5
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+....+++|.|++|+||||+++.++..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998765
No 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0012 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+.|+|+|++|+||||+++.++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 122
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.59 E-value=0.0013 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+|+|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998865
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.59 E-value=0.0017 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..|+|.|++|+||||+++.+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987754
No 124
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.58 E-value=0.00098 Score=60.88 Aligned_cols=30 Identities=23% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
.+..++|.|++|+|||||+..+++.+.+++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 788999999999999999999988765543
No 125
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.57 E-value=0.0012 Score=55.24 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+++++|.|++|+|||||++.+...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 578999999999999999999988763
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.0014 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999998775
No 127
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.56 E-value=0.0015 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998766
No 128
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.0013 Score=54.93 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998875
No 129
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.55 E-value=0.0025 Score=59.79 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHHhhC----------------CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 62 NELVGVESRVEEIESLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..++|.+...+.|...+. ..+.+.++|++|+|||++|+.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 356666666666654441 2467999999999999999999987644
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.55 E-value=0.0037 Score=55.62 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=23.1
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++.|.|++|+|||||+.+++......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 78999999999999999998876554
No 131
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.0013 Score=53.30 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.8
Q ss_pred cEEEEecCCCCchhHHHHHH
Q 040862 82 PLLGIWGIGGIGKTTIARVI 101 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~ 101 (381)
.+++|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 132
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.52 E-value=0.016 Score=51.47 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999987753
No 133
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.50 E-value=0.0058 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-+..|+|++|.|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999886544
No 134
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.50 E-value=0.0016 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+|||||++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998764
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0023 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+||||+++.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998765
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.44 E-value=0.0014 Score=53.58 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=18.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 137
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.0026 Score=53.48 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+|+|.|++|+||||+++.+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999876543
No 138
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.42 E-value=0.0029 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..|+|.|++|+||||+|+.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998765
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.42 E-value=0.002 Score=52.38 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+++|.|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998765
No 140
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.42 E-value=0.0026 Score=57.61 Aligned_cols=107 Identities=19% Similarity=0.115 Sum_probs=58.6
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhC
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLS 157 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 157 (381)
+.....++|+|+.|+|||||++.++..+... ...+.+.+...... . .... .+ .+.. .........+...+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~-~-~~~~---~i--~~~~-ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVF-K-HHKN---YT--QLFF-GGNITSADCLKSCLR 238 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCC-S-SCSS---EE--EEEC-BTTBCHHHHHHHHTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeecccc-c-cchh---EE--EEEe-CCChhHHHHHHHHhh
Confidence 3367899999999999999999998765432 33444433221110 0 0000 00 0000 011222333777888
Q ss_pred CCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 158 RRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 158 ~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
..+-+|++|+..+.+.++.+ ..+. ..+.-+|+|+..
T Consensus 239 ~~p~ilildE~~~~e~~~~l-~~~~--~g~~tvi~t~H~ 274 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFY-NVLC--SGHKGTLTTLHA 274 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHH-HHHH--TTCCCEEEEEEC
T ss_pred hCCCEEEEcCCChHHHHHHH-HHHh--cCCCEEEEEEcc
Confidence 88889999999775544433 3332 122235665553
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.42 E-value=0.0016 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.0
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+.++|.|++|+||||+++.++..+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998753
No 142
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0018 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 143
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.41 E-value=0.015 Score=54.55 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.++-++|.|.+|+|||+|+.++++.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 78889999999999999999999876443
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.40 E-value=0.0037 Score=53.67 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=27.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...++.|.|++|+|||||+.+++......-..++|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 678999999999999999999887654433334444
No 145
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.40 E-value=0.002 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+..|+|.|++|+||||+++.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999877543
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0019 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999988653
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0019 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++++|.|++|+||||||+.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 148
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0022 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
-..++|.|++|+||||+++.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988754
No 149
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.37 E-value=0.0022 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998865
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+|+|.|++|+||||+++.++..+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999988753
No 151
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.35 E-value=0.021 Score=55.63 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=61.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHH----
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRR---- 155 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~---- 155 (381)
..+++.|+|+||+||||++..++..+...-. .+.+..... .....+....... ...+..+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~-~Vl~~ApT~---------~Aa~~L~e~~~~~---a~Tih~ll~~~~~~ 269 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGL-EVGLCAPTG---------KAARRLGEVTGRT---ASTVHRLLGYGPQG 269 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSH---------HHHHHHHHHHTSC---EEEHHHHTTEETTE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEecCcH---------HHHHHhHhhhccc---HHHHHHHHcCCcch
Confidence 5789999999999999999999887655433 333331111 1112222111110 0001111000
Q ss_pred h------CCCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEeccccCCCCCHHH
Q 040862 156 L------SRRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQMKGFGDDH 206 (381)
Q Consensus 156 l------~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~l~~L~~~e 206 (381)
. ....-+||+|++.. ...+..++..+. .+.++|+..-...+++.....
T Consensus 270 ~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~QL~~v~~g~ 325 (574)
T 3e1s_A 270 FRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQLPPVDAGL 325 (574)
T ss_dssp ESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTSCCCSSSCC
T ss_pred hhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccccCCccCCc
Confidence 0 01234899999854 345666666543 567888888777766655433
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.34 E-value=0.0046 Score=52.52 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+++|.|++|+|||||+..++.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999976543
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.34 E-value=0.0021 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+..++|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0025 Score=52.40 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....++|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.33 E-value=0.0019 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++.++|+|++|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 57899999999999999999987553
No 156
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.0025 Score=53.47 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+|+|.|++|+||||+++.++..+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
No 157
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.29 E-value=0.0025 Score=53.90 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+.++|.|.|+||+||||.|..+++.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999998765
No 158
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.29 E-value=0.0069 Score=55.75 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=58.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--CCCCCC-HHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD--VNVIPH-IDLNFRRL 156 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~-~~~l~~~l 156 (381)
...+++|+|++|+|||||++.++..+.......+.+.... ........ + ..+... ...... -..+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~~~~~~------~-~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHK------K-SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCSCCCCS------S-SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-HhhhhccC------c-eEEEeeecCCCHHHHHHHHHHHh
Confidence 6779999999999999999999886544322333332110 00000000 0 000000 001111 22366777
Q ss_pred CCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 157 SRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 157 ~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
...+-+|++|++.+.+.+...+... ..+..++.|+..
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~ 243 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHT 243 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCC
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECc
Confidence 7778899999998766655544432 234456666553
No 159
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.29 E-value=0.0024 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 160
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.28 E-value=0.061 Score=49.30 Aligned_cols=45 Identities=31% Similarity=0.427 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|....+.++...+. ....|.|+|++|+||+.+|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 578998888887777654 556688999999999999998876543
No 161
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0052 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.++.|.|+||+|||+||.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.27 E-value=0.0022 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+.|+|.|++|+||||+++.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988653
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.26 E-value=0.006 Score=52.26 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...++.|.|++|+|||||+..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999999999985
No 164
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.0057 Score=54.97 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=36.7
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHH
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSE 138 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 138 (381)
+..+.++.|.|.||+||||||.+++.....+...++|+. + ......+...+...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-l------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-L------EMGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-S------SSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-C------CCCHHHHHHHHHHH
Confidence 447889999999999999999999876554333344443 2 23445555555543
No 165
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0029 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+..|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 166
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.22 E-value=0.0022 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred CCcEEEEecCCCCchhHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVI 101 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~ 101 (381)
.+.+++|.|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4679999999999999999964
No 167
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.19 E-value=0.0031 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 168
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.19 E-value=0.0025 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 169
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.19 E-value=0.0029 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998764
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.18 E-value=0.0032 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
++.+++|.|++|+|||||++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999765
No 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.17 E-value=0.0032 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++|.|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987653
No 172
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.16 E-value=0.0033 Score=53.31 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 678999999999999999999988654
No 173
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.16 E-value=0.003 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|++|+||||+++.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 174
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.16 E-value=0.013 Score=51.97 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 71 VEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 71 l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
++.+.--+..+.+++|.|++|+|||||+..++..+...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 44554334478899999999999999999999876544
No 175
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.15 E-value=0.005 Score=49.24 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 67799999999999999999999865
No 176
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.15 E-value=0.0061 Score=51.40 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=31.9
Q ss_pred cchhhHHHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 65 VGVESRVEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 65 vGR~~~l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
-+.+...+.+...+. ..+.++|.|.+|+|||||+..++......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444455555443 57899999999999999999999875444
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.15 E-value=0.0032 Score=52.81 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988654
No 178
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.14 E-value=0.0049 Score=49.78 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+++.|.|++|+|||||+..++..+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999887654
No 179
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.14 E-value=0.14 Score=47.26 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=34.7
Q ss_pred CcccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..++|....++++.+.+. ....|.|+|++|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 467888888888777655 44556999999999999999887653
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.13 E-value=0.0034 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|+.|+|||||++.++....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999987653
No 181
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.12 E-value=0.0031 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|++|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999999999998755
No 182
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.12 E-value=0.0058 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+|+|.|++|+|||||++.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999886654
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.12 E-value=0.0035 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...++|.|++|+||||+++.++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.12 E-value=0.0036 Score=53.01 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999988653
No 185
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.11 E-value=0.0033 Score=53.55 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....|+|.|++|+||||+++.++..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998765
No 186
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.09 E-value=0.0032 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998764
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.09 E-value=0.0035 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 188
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.07 E-value=0.0037 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 67799999999999999999998755
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.07 E-value=0.0039 Score=50.18 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.5
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.|+|.|++|+||||+++.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.07 E-value=0.005 Score=55.31 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=30.1
Q ss_pred ccchhhHHHHHHHhhC------CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 64 LVGVESRVEEIESLLG------AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++|-...+..+...+. .+.+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445554444332 234899999999999999999887665
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.06 E-value=0.0051 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 688999999999999999999984
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.05 E-value=0.0038 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.9
Q ss_pred EEEEecCCCCchhHHHHHHHhhhc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.05 E-value=0.0049 Score=52.29 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998743
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.05 E-value=0.01 Score=50.18 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=27.9
Q ss_pred HHHHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 71 VEEIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 71 l~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+...+. ....++|.|.+|+|||||+..++......
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444433 46788999999999999999999865433
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.04 E-value=0.018 Score=52.04 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=37.9
Q ss_pred hhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHH
Q 040862 77 LLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEV 139 (381)
Q Consensus 77 ~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 139 (381)
-+..+.++.|.|.||+||||||..++......-..+.|+. + ......+...++...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l------Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L------EMSAEQLALRALSDL 97 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C------CCCHHHHHHHHHHHh
Confidence 3447889999999999999999999987654323344433 3 334456666665443
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.04 E-value=0.006 Score=54.46 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.+++|.|++|+|||||+..++..+... ...+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 5699999999999999999999876544 3344443
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.04 E-value=0.0054 Score=53.49 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhc-c-CCCCC
Q 040862 70 RVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLK-D-VNVIP 147 (381)
Q Consensus 70 ~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~-~~~~~ 147 (381)
.++.+. +....+++|+|+.|+|||||++.++..+...+...+++.... .......... + +.. . .....
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~----~---v~q~~~gl~~~ 85 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS----I---VNQREVGEDTK 85 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS----E---EEEEEBTTTBS
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce----e---eeHHHhCCCHH
Confidence 344443 457889999999999999999999886543323344433211 0000000000 0 000 0 00011
Q ss_pred CHH-HHHHHhCCCeEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecc
Q 040862 148 HID-LNFRRLSRRKVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRN 196 (381)
Q Consensus 148 ~~~-~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~ 196 (381)
.+. .+.+.+...|-+|++|+..+.+....++... ..+.-|++|+..
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~ 132 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHT 132 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECC
T ss_pred HHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCc
Confidence 222 2555666677799999997666555444432 235567777765
No 198
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.03 E-value=0.023 Score=47.52 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--CCCCCCHHHHHHHhC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD--VNVIPHIDLNFRRLS 157 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~l~~~l~ 157 (381)
...+.+++|+.|.||||.+...+.+....-..++++..... . ..+-.. +...++.. .........+.....
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~-R~ge~~----i~s~~g~~~~a~~~~~~~~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--N-RYSEED----VVSHNGLKVKAVPVSASKDIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGGGGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--C-cchHHH----HHhhcCCeeEEeecCCHHHHHHHHh
Confidence 45788899999999999999998877555333444431111 0 111111 22222211 011122223333333
Q ss_pred CCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 158 RRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 158 ~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
+.--+|++|++.- .+.++.+ ..+. ..+..||+|.++..
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEecccc
Confidence 3344999999843 3444333 3222 23678999998766
No 199
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.02 E-value=0.0039 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 200
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.01 E-value=0.0039 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+.++|.|++|+|||+||.+++.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999998864
No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.01 E-value=0.004 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.3
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.99 E-value=0.0037 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+++|.|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 203
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.98 E-value=0.0086 Score=56.48 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=35.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLS 137 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 137 (381)
.++-++|.|.+|+|||+|+.++++.+......++.+..+.+. .....++...+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER---~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCC---SHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccC---cHHHHHHHHhhhc
Confidence 678889999999999999999998764433333333333322 3334455555543
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.98 E-value=0.016 Score=54.63 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHH
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEV 139 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 139 (381)
.+.++.|.|+||+|||+||.+++........ .++|+. + ..+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C------CCCHHHHHHHHHHHH
Confidence 6789999999999999999999987654323 344433 3 233456666665443
No 205
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.98 E-value=0.016 Score=54.87 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.++.|.|++|+|||||+..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999987654
No 206
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.97 E-value=0.0041 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.95 E-value=0.0048 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...+++|.|++|+||||+++.++..+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999997653
No 208
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.95 E-value=0.0037 Score=56.26 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++++|.||+|+|||||+..++.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999998653
No 209
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.95 E-value=0.0063 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+++|.|+.|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999998865
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.92 E-value=0.0043 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..|+|.|++|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.91 E-value=0.005 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+.+++|.|++|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56889999999999999999988764
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.91 E-value=0.0067 Score=55.31 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+||||||.+++......-..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6889999999999999999999876654433344443
No 213
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.90 E-value=0.0047 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++++|.||+|+|||+|+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998765
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.90 E-value=0.0049 Score=51.79 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+.+++|.|++|+||||+++.++..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999988765
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.89 E-value=0.0053 Score=55.61 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
...++|.|++|+||||+++.++..+.-.|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34589999999999999999988665433
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.88 E-value=0.0035 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+||||+++.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999988754
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.87 E-value=0.0075 Score=55.07 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+||||||.+++......-..++|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6889999999999999999999987654433345544
No 218
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0048 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999998654
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.85 E-value=0.0047 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.1
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+++|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.84 E-value=0.005 Score=51.17 Aligned_cols=25 Identities=32% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+|+|.|++|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999875
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.83 E-value=0.017 Score=51.59 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|+.|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999999988654
No 222
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.83 E-value=0.0036 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=17.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHH-hhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIF-NRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~-~~~ 105 (381)
.+.+++|.|+.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999999998 653
No 223
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.82 E-value=0.0027 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+|+|.|++|+||||+++.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999987643
No 224
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0074 Score=53.82 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+++|.|+.|+||||+++.++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35699999999999999999999876543
No 225
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.78 E-value=0.018 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=25.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.++.|.|.||+|||+||.+++.....+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 67899999999999999999999876544
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.77 E-value=0.006 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...+|+|.|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.77 E-value=0.014 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++.|+|++|+|||+||.+++....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 678999999999999999999998653
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.73 E-value=0.0086 Score=53.44 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.+++|+|++|+||||++..++..+... ...+.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 5689999999999999999999877654 2334443
No 229
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.72 E-value=0.0059 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+|||||++.++..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 577999999999999999999988654
No 230
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.70 E-value=0.0069 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....|+|.|++|+||||+|+.++..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999998763
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.70 E-value=0.0067 Score=51.79 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|++|+||||+++.++..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987653
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.70 E-value=0.006 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++++|.||+|+|||+||..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999999865
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.70 E-value=0.012 Score=55.82 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
.+.+++|.|++|+|||||++.++..+... ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999999876543 3344443
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.70 E-value=0.006 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..++|.|+.|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999988654
No 235
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.69 E-value=0.006 Score=54.67 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++|+|++|+|||||+..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998653
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.68 E-value=0.011 Score=47.94 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++++|.|++|+|||||+..++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 237
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.67 E-value=0.0073 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++++|.|++|+||||+++.++..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988653
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.67 E-value=0.0087 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+++|.|+.|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999999876544
No 239
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.65 E-value=0.007 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++|.|+||+||||.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998764
No 240
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.65 E-value=0.0068 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998865
No 241
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.62 E-value=0.0068 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...|+|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998876
No 242
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.62 E-value=0.012 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++.|.|++|+|||||+..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987554
No 243
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.62 E-value=0.0065 Score=54.79 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.6
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 244
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.61 E-value=0.0073 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+|+|+|++|+||||+++.+.+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998763
No 245
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.60 E-value=0.011 Score=52.65 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+..++|+|++|.|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 378899999999999999999998765
No 246
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.58 E-value=0.0072 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHHHhhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 247
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.57 E-value=0.013 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+.|+||||+|||.+|..+++.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3479999999999999999999853
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.011 Score=50.06 Aligned_cols=36 Identities=17% Similarity=-0.120 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
...+++++|++|+||||++..++.+...+...+.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 567899999999999999999998876553334443
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.57 E-value=0.0079 Score=51.54 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|+.|+|||||++.++.-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 678999999999999999999886543
No 250
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.54 E-value=0.0084 Score=51.16 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+++|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999998765
No 251
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.52 E-value=0.0081 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
+.+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 252
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.51 E-value=0.012 Score=52.77 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
+.++++|+|-||+||||.+..++.-+...-. .+.+.++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEecC
Confidence 6899999999999999999999887665422 44444444
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.50 E-value=0.0067 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999987644
No 254
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.50 E-value=0.013 Score=49.52 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.6
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccc
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.|.+.|.||+||||++..++..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47899999999999999999876654
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.49 E-value=0.011 Score=53.97 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=27.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
.+.+++|+|+.|+||||++..++..+... ...+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35689999999999999999999876543 333444
No 256
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.48 E-value=0.0056 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+..+|+|.|++|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 257
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.46 E-value=0.092 Score=44.83 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=31.3
Q ss_pred ccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 64 LVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 64 ~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.=|+.+.+.+..++... -+.|+|+.|.|||.++..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 455666666677666643 48899999999999999888765
No 258
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.0049 Score=60.43 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHhhCCCc-------------EEEEecCCCCchhHHHHHHHhhh
Q 040862 62 NELVGVESRVEEIESLLGAAP-------------LLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~-------------~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.++|.+...+.+...+.+.. .+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 678999987777665555432 68999999999999999998765
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.44 E-value=0.013 Score=52.74 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
.+++++|+|++|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 45689999999999999999999877654 3344444
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.43 E-value=0.013 Score=53.68 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
...++.|+|++|+|||+||.+++......-..++|+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 6789999999999999999999887654433455544
No 261
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.43 E-value=0.016 Score=52.54 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 70 RVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 70 ~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++.+.-...+..+++|.|++|+|||||+..+...+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3344433334788999999999999999999987543
No 262
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.43 E-value=0.025 Score=54.26 Aligned_cols=55 Identities=7% Similarity=0.014 Sum_probs=37.2
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhhccccc-ceEEEEeccccccCCCChHHHHHHHHHHH
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFE-GSCFLENVREESQKPGGLASLQQKLLSEV 139 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 139 (381)
+....++.|.|++|+|||+||.+++........ .++|+. . .....++...++...
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~------E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-L------EESVEETAEDLIGLH 294 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-c------cCCHHHHHHHHHHHH
Confidence 336789999999999999999999987765423 344443 3 223455665554443
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.41 E-value=0.021 Score=51.85 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...++.|+|++|+|||+||.+++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998864
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.014 Score=54.63 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++.++|++|+||||++..++..+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 6799999999999999999999877654
No 265
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.37 E-value=0.01 Score=47.78 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..+.+.|.|++|+||||||.++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4678999999999999999999874
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.37 E-value=0.0083 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998754
No 267
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.34 E-value=0.009 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
+.+++|.|++|+||||+++.++..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999874
No 268
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.33 E-value=0.015 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.136 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 67799999999999999999999754
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.32 E-value=0.011 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999998744
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.32 E-value=0.01 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999999998764
No 271
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.32 E-value=0.02 Score=56.88 Aligned_cols=40 Identities=30% Similarity=0.250 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.+.+.+...|....+..|+||||+|||+.+.++...+..
T Consensus 192 ~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 192 TSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp HHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455667777766779999999999999988877765433
No 272
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.32 E-value=0.013 Score=54.85 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+++++|++|+||||++..++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999877654
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.30 E-value=0.011 Score=51.61 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+++|.|+.|+|||||++.++.-..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999999987543
No 274
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.30 E-value=0.024 Score=51.82 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+..+|+|+|.+|+|||||+..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999876543
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.29 E-value=0.011 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999874
No 276
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.29 E-value=0.0095 Score=55.75 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+|+|+|++|+||||+|+.++..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998754
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.29 E-value=0.01 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999988643
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.29 E-value=0.011 Score=51.14 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+++|.|+.|+|||||++.++.-....
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 67899999999999999999998765443
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.29 E-value=0.013 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...++.|+|++|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999999999875
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.28 E-value=0.0078 Score=61.26 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHhhC---------------CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 62 NELVGVESRVEEIESLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
..++|.+...+.|.+.+. ..+.++++|++|+|||+||+.++......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 667888888888887754 34678999999999999999999987543
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.28 E-value=0.027 Score=52.52 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHhhC-CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 73 EIESLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 73 ~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.|.+.+. ...+++|.|+.|+|||||++.++..+...
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4444444 56799999999999999999999876543
No 282
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.27 E-value=0.018 Score=48.47 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=25.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+|+|.|+.|+||||++..+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999987654
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.26 E-value=0.015 Score=54.46 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=28.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
+++++++|.+|+||||++..++..+.......+.+.+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 56899999999999999999998776652334444434
No 284
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.26 E-value=0.083 Score=60.13 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--------CCC
Q 040862 74 IESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD--------VNV 145 (381)
Q Consensus 74 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~ 145 (381)
+..++...+.+.++||+|+|||++|+.++...... .+...+... ......+...+...+... .+.
T Consensus 1260 l~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~---~~~~infsa----~ts~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLY---DVVGINFSK----DTTTEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp HHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSC---EEEEEECCT----TCCHHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred HHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEEeec----CCCHHHHHHHHHHHhhhccccCCccccCC
Q ss_pred CCCHHHHHHHhCCCeEEEEEeCC-------CChhhHHHHHhccCCCCC-------------CCeEEEEecccc-------
Q 040862 146 IPHIDLNFRRLSRRKVLIVLDDV-------TCFNQIESLVGSLDRLLP-------------ESRILITTRNKQ------- 198 (381)
Q Consensus 146 ~~~~~~l~~~l~~~~~LlvlDdv-------~~~~~~~~l~~~~~~~~~-------------~~~iliTsr~~~------- 198 (381)
... +++++++||+ +..+...+++..+.+.+. +..+|.++-...
T Consensus 1333 ~~g----------k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l 1402 (2695)
T 4akg_A 1333 SDI----------KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM 1402 (2695)
T ss_dssp SSS----------SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCC
T ss_pred CCC----------ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccC
Q ss_pred ------------CCCCCHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Q 040862 199 ------------MKGFGDDHALELFNRHAFRQNLVDVDYKELSDKVINYA 236 (381)
Q Consensus 199 ------------l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 236 (381)
++..+.++-..+|...........++.......++..+
T Consensus 1403 ~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1403 SERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred ChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.25 E-value=0.0096 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999988643
No 286
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.23 E-value=0.0098 Score=50.74 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998754
No 287
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.23 E-value=0.014 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
. .+++|.|+.|+|||||++.++.-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 6 899999999999999999998754
No 288
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.23 E-value=0.022 Score=48.41 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+|+|.|++|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 56789999999999999999999987654
No 289
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.23 E-value=0.021 Score=51.87 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=24.9
Q ss_pred hCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 78 LGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 78 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+..+++|.|++|+|||||+..++..+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34778999999999999999999987654
No 290
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.22 E-value=0.017 Score=48.27 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=25.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFE 110 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 110 (381)
++.|+|-|+-|+||||+++.+++.+.+.++
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 468999999999999999999998865443
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.22 E-value=0.012 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998754
No 292
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.22 E-value=0.012 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999875
No 293
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.20 E-value=0.0064 Score=49.29 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.0
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.++|+|++|+|||||++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999886654
No 294
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.20 E-value=0.012 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 67899999999999999999988654
No 295
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.20 E-value=0.01 Score=52.29 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..+|+|+|++|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 296
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.19 E-value=0.012 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999987753
No 297
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.18 E-value=0.02 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++++.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367889999999999999999998766
No 298
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.17 E-value=0.099 Score=51.24 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++...
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57799999999999999999998754
No 299
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.17 E-value=0.011 Score=54.39 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++++|.||+|+|||||+..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 46889999999999999999998753
No 300
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.014 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999998764
No 301
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.13 E-value=0.011 Score=51.37 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999988643
No 302
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.12 E-value=0.011 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 67899999999999999999998754
No 303
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.10 E-value=0.018 Score=53.46 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHhhC----CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 73 EIESLLG----AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 73 ~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.|-++|. ...++.|.|++|+|||||+..++-.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3444553 6889999999999999999987643
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.025 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999864
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.06 E-value=0.014 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++.-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999987643
No 306
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.05 E-value=0.013 Score=50.26 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
+..++|.|+.|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998764
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.02 E-value=0.014 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999999998754
No 308
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.02 E-value=0.028 Score=53.26 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=24.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF 109 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 109 (381)
.+.+.|.|++|+|||+++..++..+....
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 45999999999999999999998775543
No 309
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.98 E-value=0.021 Score=50.66 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=27.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEe
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLEN 117 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 117 (381)
+.+++|+|++|+||||++..++..+... ...+.+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEec
Confidence 5689999999999999999999876654 33444443
No 310
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.98 E-value=0.013 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+++++|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876644
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.97 E-value=0.013 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999999998764
No 312
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.96 E-value=0.022 Score=50.80 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
..++++|+|-||+||||+|..++..+.+. ...+.+.++.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 56788888999999999999999877654 3344444443
No 313
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.93 E-value=0.044 Score=51.20 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.++-+.|.|.+|+|||+|+.++++....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 5667889999999999999999887554
No 314
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.92 E-value=0.033 Score=50.02 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=27.1
Q ss_pred HHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 72 EEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 72 ~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..|-..|. ...++.|+|++|+|||+||.+++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444553 67899999999999999999998753
No 315
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.90 E-value=0.015 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-.++|.|++|+|||||++.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 316
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.89 E-value=0.039 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+.+|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999998765
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.88 E-value=0.019 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
....++|.|++|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46689999999999999999998765
No 318
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.86 E-value=0.022 Score=50.62 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.++++.|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4589999999999999999999876554
No 319
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.85 E-value=0.015 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-.++|.|++|+|||||+..++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 320
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.85 E-value=0.073 Score=44.05 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=26.3
Q ss_pred EEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 83 LLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
.|+|-|+-|+||||.++.+++.+..+...+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999887664434443
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.84 E-value=0.016 Score=52.76 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 6789999999999999999999873
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.84 E-value=0.046 Score=45.89 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+|++.|+.|+||||+++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999987654
No 323
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.83 E-value=0.026 Score=48.26 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.+.+|+|.|++|+||||++..+++.+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999987654
No 324
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.79 E-value=0.016 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.1
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..++|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 325
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.77 E-value=0.048 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++-+.|.|.+|+|||+|+.++++...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 567788999999999999999988654
No 326
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.76 E-value=0.012 Score=47.94 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 327
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.76 E-value=0.024 Score=51.95 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
..+..++|+|+.|+|||||++.++..+... ...+.+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 378899999999999999999998865432 3344443
No 328
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.73 E-value=0.31 Score=47.02 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=28.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccc---cceEEEEecc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNF---EGSCFLENVR 119 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~ 119 (381)
.+.+.|.|.+|.|||++++.++..+...+ +..+|+.+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46789999999999999999877654332 2345555544
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.69 E-value=0.021 Score=46.53 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
..+.+|+|+.|+|||||+..++.-+
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987644
No 330
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.67 E-value=0.032 Score=53.26 Aligned_cols=45 Identities=4% Similarity=-0.012 Sum_probs=35.5
Q ss_pred cccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 63 ELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
....|.+..+.+.+... ...++.+.|++|+||||+++.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34556666777777663 5578999999999999999999998764
No 331
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.67 E-value=0.03 Score=49.89 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=25.9
Q ss_pred HHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 71 VEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 71 l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++|.+.+. ..+++|.|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l~-G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 444444444 6789999999999999999998 54
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.67 E-value=0.02 Score=52.14 Aligned_cols=25 Identities=40% Similarity=0.621 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+++|.|+.|+|||||++.++.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999999999864
No 333
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.63 E-value=0.02 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999864
No 334
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.63 E-value=0.057 Score=50.98 Aligned_cols=26 Identities=38% Similarity=0.254 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCchhHHHH-HHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIAR-VIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 105 (381)
.++-++|.|.+|+|||+||. .+++..
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 67888999999999999965 566554
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.62 E-value=0.062 Score=45.44 Aligned_cols=110 Identities=10% Similarity=0.019 Sum_probs=56.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhccCCCCCCHHHHHHHhCCC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKDVNVIPHIDLNFRRLSRR 159 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 159 (381)
...+.+++|+-|.||||-+...+.+....-..++++....+ . ..+ ..+...+..... ........++.... +.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~-Ryg-~~i~sr~G~~~~--a~~i~~~~di~~~~-~~ 90 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--T-RYS-SSFCTHDRNTME--ALPACLLRDVAQEA-LG 90 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--C-CC------------CE--EEEESSGGGGHHHH-TT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--c-cch-HHHHhhcCCeeE--EEecCCHHHHHHHh-cc
Confidence 36788999999999999888888776554333443332211 1 222 223222211111 00111222333333 23
Q ss_pred eEEEEEeCCCChhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 160 KVLIVLDDVTCFNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 160 ~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
--+|++|++.-...+..+...+.. .+..||+|.++-.
T Consensus 91 ~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 91 VAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred CCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 349999998432235555544432 5678999999854
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.59 E-value=0.021 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 6789999999999999999999874
No 337
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.58 E-value=0.021 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 6789999999999999999999863
No 338
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=94.58 E-value=0.057 Score=51.28 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=44.2
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHhccc----CCccCCCcccchhhHHHHHHHh---hC-------------CCcEEEEe
Q 040862 28 VSFSELEEKFPEKMQRWRSALTEAANLS----GFDSLQNELVGVESRVEEIESL---LG-------------AAPLLGIW 87 (381)
Q Consensus 28 ~~~~~~~~~~~~~v~~~~~~l~~~~~~~----~~~~~~~~~vGR~~~l~~l~~~---l~-------------~~~~v~I~ 87 (381)
.+...+...+...+..|++.+....... .|+..+-++..+....+.+... +. +.-.|+|.
T Consensus 160 ~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~iv 239 (476)
T 3gee_A 160 TAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIA 239 (476)
T ss_dssp HHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEE
Confidence 3445566667777888988776643211 2332222333444333322221 11 23348999
Q ss_pred cCCCCchhHHHHHHHhh
Q 040862 88 GIGGIGKTTIARVIFNR 104 (381)
Q Consensus 88 G~~GiGKTtLa~~~~~~ 104 (381)
|.+|+|||||...+...
T Consensus 240 G~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 240 GKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp CCTTSSHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHhCC
Confidence 99999999999998763
No 339
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.56 E-value=0.039 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.++-++|.|.+|+|||+|+.+++....
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 677788999999999999999998654
No 340
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.55 E-value=0.02 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.++|.|+.|+|||||++.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.53 E-value=0.022 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 6789999999999999999999874
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.51 E-value=0.018 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+.+++|.|+.|+|||||++.++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 67899999999999999999998754
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.51 E-value=0.017 Score=51.55 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|+|+.|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 6889999999999999999998764
No 344
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.50 E-value=0.096 Score=49.52 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=44.8
Q ss_pred hHHHHHHHHhhcHHHHHHHHHHHHHHh----cccCCccCCCcccchhh---HHHH----HHHhhC---------CCcEEE
Q 040862 26 FGVSFSELEEKFPEKMQRWRSALTEAA----NLSGFDSLQNELVGVES---RVEE----IESLLG---------AAPLLG 85 (381)
Q Consensus 26 ~~~~~~~~~~~~~~~v~~~~~~l~~~~----~~~~~~~~~~~~vGR~~---~l~~----l~~~l~---------~~~~v~ 85 (381)
...+...+...+...+..|++.+.+.. ....|+. +-.+.-+.. .+.. +.+.+. ..-.|+
T Consensus 150 ~~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ 228 (462)
T 3geh_A 150 AQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE-DLPPLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVA 228 (462)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSS-SSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEE
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccc-cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEE
Confidence 334555667777777888887766532 1122322 112222222 2222 222222 233589
Q ss_pred EecCCCCchhHHHHHHHhh
Q 040862 86 IWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 86 I~G~~GiGKTtLa~~~~~~ 104 (381)
|.|.+|+|||||...+...
T Consensus 229 ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHhCC
Confidence 9999999999999999874
No 345
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.50 E-value=0.012 Score=51.27 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
....|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999887663
No 346
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.49 E-value=0.025 Score=47.04 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|+.|+||||+++.++.++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999764
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.48 E-value=0.019 Score=49.98 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++|.|+.|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998754
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.48 E-value=0.023 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 6789999999999999999999864
No 349
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.48 E-value=0.023 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 6789999999999999999998763
No 350
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.48 E-value=0.027 Score=47.42 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+..|++.|+.|+||||++..+++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4678999999999999999999998765
No 351
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.48 E-value=0.05 Score=51.48 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHH-HHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIAR-VIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~ 106 (381)
.++-++|.|.+|+|||+||. .+++...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 67788999999999999954 5666544
No 352
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.47 E-value=0.029 Score=52.11 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....++|.|++|+|||||++.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 6779999999999999999999873
No 353
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.46 E-value=0.034 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=27.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
++++|.|-||+||||++..++..+... ...+.+.+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~-G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC-CCcEEEEcCC
Confidence 467778999999999999999887654 3344444443
No 354
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.45 E-value=0.023 Score=52.04 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 6789999999999999999999863
No 355
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.45 E-value=0.014 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.049 Sum_probs=22.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999998765
No 356
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.45 E-value=0.031 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|++|+|||||...+.....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 67899999999999999999987543
No 357
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.43 E-value=0.023 Score=47.83 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+.+++|.|++|+||||+++.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998764
No 358
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.41 E-value=0.023 Score=45.08 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 359
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.022 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.7
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..|+|.|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 360
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.40 E-value=0.033 Score=53.59 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...+|+++|++|.||||+|+.++..+.-.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35689999999999999999999876433
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.37 E-value=0.023 Score=44.86 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 362
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.34 E-value=0.032 Score=54.01 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHhh----CCCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 65 VGVESRVEEIESLL----GAAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 65 vGR~~~l~~l~~~l----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
+.+....+.+.... ..+.+++|.|++|+|||||++.++..+..
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 44444555555543 26789999999999999999999987754
No 363
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.30 E-value=0.052 Score=49.31 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=28.2
Q ss_pred HHHHhhC--CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 73 EIESLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 73 ~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.|...+. .+..++|.|+.|+|||||++.++.....
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3444444 7889999999999999999999987653
No 364
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.29 E-value=0.023 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5889999999999999998763
No 365
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.28 E-value=0.02 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 6789999999999999999999874
No 366
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.27 E-value=0.042 Score=51.25 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
+.+++++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877654
No 367
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.24 E-value=0.026 Score=44.59 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998863
No 368
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.22 E-value=0.031 Score=44.89 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
....|+|.|.+|+|||||+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 466789999999999999999986
No 369
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.20 E-value=0.036 Score=52.89 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.++|+|+|.+|+||||++..++..+...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4589999999999999999999876554
No 370
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.19 E-value=0.044 Score=52.55 Aligned_cols=28 Identities=25% Similarity=0.079 Sum_probs=24.4
Q ss_pred CCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 79 GAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 79 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+..++|.|+.|+||||+++.++..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3677899999999999999999987664
No 371
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.17 E-value=0.025 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 372
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.16 E-value=0.053 Score=49.26 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc--ccccceEEEEec
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS--RNFEGSCFLENV 118 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~~~ 118 (381)
..+++++.|.||+||||+|..++..+. .. ...+.+.+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~-g~~vllid~ 56 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQP-NEQFLLIST 56 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCT-TSCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEEC
Confidence 468999999999999999999998776 43 334444444
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.15 E-value=0.028 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...+++|.|+.|+|||||++.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 6889999999999999999999863
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.13 E-value=0.029 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999863
No 375
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.12 E-value=0.058 Score=45.09 Aligned_cols=124 Identities=13% Similarity=-0.029 Sum_probs=52.1
Q ss_pred CcccchhhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhc
Q 040862 62 NELVGVESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLK 141 (381)
Q Consensus 62 ~~~vGR~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 141 (381)
+.+|.|...+-... ....+.+|+|+-|.||||.+...+++....-..+..+....+ .......+.+..+.
T Consensus 12 ~~~~~~~~~m~~~~---~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D-------~R~~~~~I~Sr~G~ 81 (219)
T 3e2i_A 12 SGLVPRGSHMYETY---HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID-------DRYHKEKVVSHNGN 81 (219)
T ss_dssp ------------------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------------CBTTB
T ss_pred cCcccCCceEeecc---CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC-------CcchhhhHHHhcCC
Confidence 44555554443322 157889999999999999555555554433222222221110 01111123233332
Q ss_pred c--CCCCCCHHHHHHHhCCCeEEEEEeCCC--ChhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 142 D--VNVIPHIDLNFRRLSRRKVLIVLDDVT--CFNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 142 ~--~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
. .........+...+.++.-.|++|++. +.+.++.+.... ..+..|++..-+..
T Consensus 82 ~~~a~~v~~~~di~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la---~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 82 AIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLS---ADGHRVIVAGLDMD 139 (219)
T ss_dssp CCEEEEESSGGGGGGSCCTTCSEEEECCGGGSCTHHHHHHHHHH---HTTCEEEEEEESBC
T ss_pred ceeeEEeCCHHHHHHHHhcCCCEEEEechhcCCHHHHHHHHHHH---HCCCEEEEeecccc
Confidence 2 111223333444445566799999973 333333333221 24667777665444
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.028 Score=44.74 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 377
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.10 E-value=0.029 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999863
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.08 E-value=0.03 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 379
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.08 E-value=0.067 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCcEEEEecCCCCchhHHHH-HHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIAR-VIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 105 (381)
.++-++|.|.+|+|||+||. .+++..
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 67888999999999999965 566654
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.06 E-value=0.036 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999874
No 381
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.03 E-value=0.03 Score=44.91 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 382
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.03 E-value=0.03 Score=44.57 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 383
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.03 E-value=0.039 Score=59.28 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..++|+|+.|.|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 6789999999999999999998764
No 384
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.02 E-value=0.031 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 385
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.02 E-value=0.031 Score=44.43 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 386
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.02 E-value=0.019 Score=52.34 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+.+++|.|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6789999999999999999999863
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.02 E-value=0.032 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.1
Q ss_pred EEEecCCCCchhHHHHHHHhh
Q 040862 84 LGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~ 104 (381)
|+|.|.+|+|||||+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 388
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.01 E-value=0.028 Score=50.42 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.++++|+|+.|.|||||++.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998653
No 389
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.01 E-value=0.048 Score=48.28 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHhhC-CCcEEEEec---CCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 71 VEEIESLLG-AAPLLGIWG---IGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 71 l~~l~~~l~-~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
+.++.+.+. +.++++|.+ -||+||||++..++..+... ...+.+.+.
T Consensus 23 ~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~-G~rVlliD~ 73 (298)
T 2oze_A 23 LEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL-NLKVLMIDK 73 (298)
T ss_dssp HHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 344444444 456777775 99999999999999877643 234444433
No 390
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.01 E-value=0.031 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36789999999999999999864
No 391
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.00 E-value=0.03 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 392
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.00 E-value=0.039 Score=51.36 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHhhCCCcE--EEEecCCCCchhHHHHHHHhh
Q 040862 71 VEEIESLLGAAPL--LGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 71 l~~l~~~l~~~~~--v~I~G~~GiGKTtLa~~~~~~ 104 (381)
++.+.-.+..+.+ ++|.|++|+|||||++.++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5555555557777 999999999999999998863
No 393
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.99 E-value=0.043 Score=48.37 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=27.6
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
++++|.|-||+||||+|..++..+... ...+.+.+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~-G~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 567889999999999999999877654 3344444443
No 394
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.97 E-value=0.033 Score=47.26 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
--++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 395
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.97 E-value=0.032 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998863
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.97 E-value=0.072 Score=51.38 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=25.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
...+++|.|++|+|||||+..++.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999986544
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.96 E-value=0.031 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999874
No 398
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.95 E-value=0.036 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..+.+.|.|++|+||||+|.++..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4778999999999999999999874
No 399
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.95 E-value=0.032 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 400
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.95 E-value=0.083 Score=52.14 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=32.4
Q ss_pred hhHHHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEE
Q 040862 68 ESRVEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLE 116 (381)
Q Consensus 68 ~~~l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 116 (381)
+.+.+.+...+. .+.+.|+|+||+|||+++..++..+.......+.++
T Consensus 183 ~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 344455555554 568899999999999999988876544223344443
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.93 E-value=0.029 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 402
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.92 E-value=0.035 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999863
No 403
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.91 E-value=0.036 Score=45.32 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999863
No 404
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.87 E-value=0.035 Score=44.09 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 405
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.86 E-value=0.037 Score=50.37 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 71 VEEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 71 l~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
++.|...+ ...+++|.|++|+|||||+..++....
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 33444333 467999999999999999999986543
No 406
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.81 E-value=0.07 Score=48.14 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
..+++++.|.||+||||+|..++..+.+.-. .+.+.+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~-~vllid~ 52 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRR-SVLLLST 52 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSS-CEEEEEC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCC-cEEEEEC
Confidence 4678899999999999999999987766533 4444444
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.065 Score=43.54 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHHHhhC-CCcEEEEecCCCCchhHHHHHHHh
Q 040862 73 EIESLLG-AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 73 ~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.+.+++. ..-.|+|.|.+|+|||||+..+..
T Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 7 RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 3334444 566789999999999999999985
No 408
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.79 E-value=0.034 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999985
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.79 E-value=0.034 Score=45.56 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
+...|+|.|.+|+|||||+..+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 355789999999999999999986
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.78 E-value=0.037 Score=44.06 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
...|+|.|.+|+|||||+..+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999976
No 411
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.77 E-value=0.053 Score=51.53 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
...+|+++|++|+||||+++.++..+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35688999999999999999999876533
No 412
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.76 E-value=0.036 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46889999999999999999863
No 413
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.76 E-value=0.031 Score=45.44 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 414
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.75 E-value=0.033 Score=45.31 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
++.|+|.+|+|||++|.+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3689999999999999999865
No 415
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.73 E-value=0.035 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 416
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.72 E-value=0.059 Score=47.91 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHhhCCCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 72 EEIESLLGAAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 72 ~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
+++...+. ..+++|.|++|+|||||++.+....
T Consensus 161 ~~lf~~l~-geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 161 EELKEYLK-GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHS-SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHhc-CCeEEEECCCCCcHHHHHHHhcccc
Confidence 33333333 6789999999999999999997643
No 417
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.70 E-value=0.033 Score=51.08 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
...++|.|++|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999987653
No 418
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.69 E-value=0.039 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 419
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.69 E-value=0.038 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
--|+|.|.+|+|||||+..+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999986
No 420
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.65 E-value=0.043 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999874
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.64 E-value=0.046 Score=43.02 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
...+.+|+|+.|.|||++...++.-+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999987643
No 422
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.64 E-value=0.038 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.7
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
--|+|.|.+|+|||||+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999985
No 423
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.04 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999873
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.62 E-value=0.079 Score=49.72 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
.+..++|.|++|+|||||++.++.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 7889999999999999999999886543
No 425
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.60 E-value=0.04 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||||+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 426
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.60 E-value=0.03 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHHHhh
Q 040862 83 LLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
-|+|.|.+|+|||+|+..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999863
No 427
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.59 E-value=0.042 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
.+.+|+|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998764
No 428
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.57 E-value=0.042 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999864
No 429
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.56 E-value=0.049 Score=46.61 Aligned_cols=35 Identities=26% Similarity=0.513 Sum_probs=26.2
Q ss_pred EEEecCCCCchhHHHHHHHhhhcccccceEEEEecc
Q 040862 84 LGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVR 119 (381)
Q Consensus 84 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 119 (381)
|+|.|-||+||||++..++..+.+.- ..+.+.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D 37 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY-DKIYAVDGD 37 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC-SCEEEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 55699999999999999999876653 344444443
No 430
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.54 E-value=0.04 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999863
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.53 E-value=0.023 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
....++|.|++|+|||||+..++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 566899999999999999998765
No 432
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.52 E-value=0.043 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999886
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.50 E-value=0.043 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.044 Score=44.07 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36789999999999999999863
No 435
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.47 E-value=0.044 Score=44.29 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346889999999999999999863
No 436
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.45 E-value=0.061 Score=48.38 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=27.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
..+++..|.||+||||+|..++..+.+. ...+.+.+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeC
Confidence 4677889999999999999999877665 334444434
No 437
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.45 E-value=0.044 Score=45.00 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.45 E-value=0.045 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998863
No 439
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.44 E-value=0.039 Score=44.80 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.44 E-value=0.045 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..--|+|.|.+|+|||||+..+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345788999999999999999986
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.43 E-value=0.048 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.9
Q ss_pred cEEEEecCCCCchhHHHHHHHhhhc
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
--|+|.|.+|+|||||++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3578999999999999976665443
No 442
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.42 E-value=0.076 Score=43.71 Aligned_cols=109 Identities=11% Similarity=0.037 Sum_probs=55.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEeccccccCCCChHHHHHHHHHHHhcc--CCCCCCHHHHHHHhC
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENVREESQKPGGLASLQQKLLSEVLKD--VNVIPHIDLNFRRLS 157 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~l~~~l~ 157 (381)
..++.+++|+.|.||||.+...+++....-..+..+...... ... ...+....+.. .........+...+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~---r~~----~~~i~s~~g~~~~a~~~~~~~~i~~~~~ 79 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN---RYS----KEDVVSHMGEKEQAVAIKNSREILKYFE 79 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------------CEEECTTSCEEECEEESSSTHHHHHCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc---cch----HHHHHhhcCCceeeEeeCCHHHHHHHHh
Confidence 356899999999999999999988775443323333211000 000 00011111100 001111224555554
Q ss_pred CCeEEEEEeCCCC--hhhHHHHHhccCCCCCCCeEEEEecccc
Q 040862 158 RRKVLIVLDDVTC--FNQIESLVGSLDRLLPESRILITTRNKQ 198 (381)
Q Consensus 158 ~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~~~~iliTsr~~~ 198 (381)
+.--+|++|++.- .+.++.+.. +. ..+..||+|.++..
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~-l~--~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNK-IA--ESGRRVICAGLDMD 119 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEEECSBC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-HH--hCCCEEEEEecccc
Confidence 4334899998743 334443332 21 23678999988655
No 443
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.40 E-value=0.034 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.9
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999853
No 444
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.045 Score=44.92 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999863
No 445
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.39 E-value=0.13 Score=49.17 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.++-++|.|.+|+|||+|+.++++.
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc
Confidence 6888999999999999999998775
No 446
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.38 E-value=0.36 Score=45.58 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=20.5
Q ss_pred CCcEEEEecCCCCchhHHHH-HHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIAR-VIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~-~~~~~ 104 (381)
.++-++|.|.+|+|||+|+. .+++.
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh
Confidence 67788999999999999964 55554
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.38 E-value=0.045 Score=44.17 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.9
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..|+|.|.+|+|||||+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4688999999999999999985
No 448
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.37 E-value=0.042 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
--|+|.|.+|+|||||+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999875
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.34 E-value=0.047 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999863
No 450
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.33 E-value=0.045 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
--|+|.|.+|+|||||+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999874
No 451
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.045 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998863
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.31 E-value=0.048 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.046 Score=44.76 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999863
No 454
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.044 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 105 (381)
.+..++|.|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 67899999999999999999998754
No 455
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.048 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.3
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35789999999999999999864
No 456
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.28 E-value=0.12 Score=49.93 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=34.6
Q ss_pred cccchhhHHHHHHHhhC----CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 63 ELVGVESRVEEIESLLG----AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 63 ~~vGR~~~l~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
..+.|.+..+.+.+... ...++.++|++|+||||+|+.+...+..
T Consensus 350 ~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 44555666667777663 4678999999999999999999987643
No 457
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.27 E-value=0.049 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999863
No 458
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.26 E-value=0.054 Score=45.85 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.4
Q ss_pred CcEEEEecCCCCchhHHHHHHHhhhc
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNRIS 106 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 106 (381)
..+|+|.|+.|+||||+++.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 459
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.26 E-value=0.047 Score=45.04 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.2
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
No 460
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.25 E-value=0.048 Score=48.43 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..+.|.|.|++|+||||+|.++..+
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 6778999999999999999998763
No 461
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.25 E-value=0.047 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.25 E-value=0.049 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999864
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.24 E-value=0.038 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
+..-|+|.|.+|+|||||+..+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 455688999999999999999875
No 464
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.23 E-value=0.057 Score=51.07 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCCchhHHHH-HHHhhh
Q 040862 80 AAPLLGIWGIGGIGKTTIAR-VIFNRI 105 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 105 (381)
.++-++|.|.+|+|||+||. .+++..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 57788999999999999965 566543
No 465
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.23 E-value=0.05 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||||+..+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999999986
No 466
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.19 E-value=0.05 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.7
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999863
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.19 E-value=0.051 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999999986
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.18 E-value=0.052 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999874
No 469
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.18 E-value=0.044 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999874
No 470
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.14 E-value=0.05 Score=44.91 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999873
No 471
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.13 E-value=0.054 Score=52.69 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISR 107 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 107 (381)
...+|.|.|++|+||||+|+.+...+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999987653
No 472
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.11 E-value=0.041 Score=48.92 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|++|+|||||+..++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999764
No 473
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.11 E-value=0.054 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.10 E-value=0.054 Score=44.63 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.1
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999999763
No 475
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.08 E-value=0.054 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHHHh
Q 040862 83 LLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 83 ~v~I~G~~GiGKTtLa~~~~~ 103 (381)
-|+|.|.+|+|||+|+..+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 377999999999999999986
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.06 E-value=0.073 Score=51.32 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHH-hhCCCcEEEEecCCCCchhHHHHHH
Q 040862 70 RVEEIES-LLGAAPLLGIWGIGGIGKTTIARVI 101 (381)
Q Consensus 70 ~l~~l~~-~l~~~~~v~I~G~~GiGKTtLa~~~ 101 (381)
.++.+.- -+....+++|.|++|+|||||++.+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3444433 3347899999999999999999995
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.055 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred cEEEEecCCCCchhHHHHHHHhh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
--|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 478
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.04 E-value=0.079 Score=43.77 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=25.7
Q ss_pred cEEEEe-cCCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 82 PLLGIW-GIGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 82 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
++++|+ +-||+||||++..++..+... ...+.+.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 456665 789999999999999877654 334444444
No 479
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.00 E-value=0.15 Score=44.48 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCcEEEEec-CCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 80 AAPLLGIWG-IGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 80 ~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
+.++++|+| .||+||||++..++..+.+.-. .+.+.+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~-rVLLID~ 119 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGY-KTLIVDG 119 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCC-eEEEEeC
Confidence 467888887 4899999999999987765433 4444434
No 480
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.054 Score=44.40 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 34688999999999999999986
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.98 E-value=0.091 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.+..|+|+|+.|.|||||+..+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 6789999999999999999998763
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.97 E-value=0.046 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|.+|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999863
No 483
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.93 E-value=0.049 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.0
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.-.|+|.|.+|+|||||+..+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999863
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.89 E-value=0.11 Score=57.31 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=29.1
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEE
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFL 115 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 115 (381)
..+.+.|+||+|+|||+||.+++.....+-..+.|+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 788999999999999999999988766553334444
No 485
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.88 E-value=0.055 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.5
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999985
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.88 E-value=0.057 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.9
Q ss_pred cEEEEecCCCCchhHHHHHHHh
Q 040862 82 PLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 82 ~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
--|+|.|.+|+|||||+..+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999986
No 487
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.86 E-value=0.053 Score=44.78 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 34678999999999999999875
No 488
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.83 E-value=0.057 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|.+|+|||||+..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467899999999999999999863
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.061 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.6
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..-|+|.|.+|+|||||+..+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999986
No 490
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.83 E-value=0.04 Score=44.53 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
....|+|.|.+|+|||||+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999998874
No 491
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.80 E-value=0.095 Score=47.64 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEe
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLEN 117 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~ 117 (381)
...+++..|.||+||||+|..++..+... ...+.+.+
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD 61 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVS 61 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEE
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 45677788999999999999999877655 33444443
No 492
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.80 E-value=0.055 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456889999999999999977664
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.76 E-value=0.055 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
..--|+|.|.+|+|||||+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999864
No 494
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.75 E-value=0.13 Score=47.12 Aligned_cols=29 Identities=34% Similarity=0.206 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhccc
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRN 108 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 108 (381)
.++-+.|.|++|+|||+|+.++++.+..+
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 67888999999999999999999876543
No 495
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.74 E-value=0.15 Score=45.27 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCcEEEEecC-CCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 80 AAPLLGIWGI-GGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 80 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
..++++|+|. ||+||||+|..++..+.+. ...+.+.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~ 141 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDA 141 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhC-CCcEEEEEC
Confidence 4678889885 8999999999999877654 334444433
No 496
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.74 E-value=0.11 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....|+|.|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3567999999999999999999863
No 497
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.73 E-value=0.12 Score=46.51 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhhhcccccceEEEEec
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNRISRNFEGSCFLENV 118 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 118 (381)
..+++++.|-||+||||++..++..+.+. ...+.+.+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD~ 55 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLIST 55 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEEC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 35678889999999999999999887665 334444433
No 498
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.68 E-value=0.056 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.3
Q ss_pred CcEEEEecCCCCchhHHHHHHHh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFN 103 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~ 103 (381)
.--|+|.|.+|+|||||+..+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34688999999999999999985
No 499
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.063 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.8
Q ss_pred CcEEEEecCCCCchhHHHHHHHhh
Q 040862 81 APLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 81 ~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
..-|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999863
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.63 E-value=0.03 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCCchhHHHHHHHhh
Q 040862 80 AAPLLGIWGIGGIGKTTIARVIFNR 104 (381)
Q Consensus 80 ~~~~v~I~G~~GiGKTtLa~~~~~~ 104 (381)
....++|.|++|+|||||++.+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4679999999999999999998754
Done!