Citrus Sinensis ID: 040864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MTYQEEEEAGQTSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSSKPAPDLHNLELDLNLKLG
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccHHHHccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHcccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
mtyqeeeeagqtsCNNLDAElkandnsesrIKEVGDWLSLGLKKDEALTAAAAAagdstdrrskpasgnkvfscnfcmrkfyssqalgghqnahkRERGAARRFQNHRMMMSSIGFlfnsvplrslgvqphslvdrssgalgpnlvarfgdatstgfdmipwtpfmledtidmfwpgschvdnsskpapdlhnleldlnlklg
Flexible Loop (DISEMBL)
mtyqeeeeagqtscnnldaelkandnsesrIKEVGDWLSLGLKKDEALTAAAaaagdstdrrskpasgnkvfSCNFCMRKFYSSqalgghqnaHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSskpapdlhnleldlnlklg
Low Complexity Region (SEG)
MTYQEEEEAGQTSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALTaaaaaaGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSSKPAPdlhnleldlnlklG
Disordered region (IsUnstruct)
**********************************GDWLSLGL***************************KVFSCNFCMRKFYSSQ***********************MMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHV**********************
Disordered Region (DISOPRED)
*************************************************************************CNFCMRKFYSSQALGGHQNAHK**********************FNSVPLRSLGVQ***************************************D***************************DLNLKLG
Disordered Region (DISEMBL)
***********TSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALT******************GNKVFSCNFCMRKFYSSQ*************GAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSSKPAPDLHNLELDLNLKLG
Disordered Region (DISPRO)
*******************************************************************GNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHV*************ELD******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTYQEEEEAGQTSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSSKPAPDLHNLELDLNLKLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q42485	228	Zinc finger protein 1 OS=	yes	no	0.502	0.447	0.385	6e-15
Q39262	235	Zinc finger protein 3 OS=	no	no	0.502	0.434	0.406	3e-14
Q39266	209	Zinc finger protein 7 OS=	no	no	0.679	0.660	0.393	4e-14
Q39263	260	Zinc finger protein 4 OS=	no	no	0.541	0.423	0.356	2e-13
Q9FFX4	161	Zinc finger protein KNUCK	no	no	0.251	0.316	0.557	2e-11
Q39261	150	Zinc finger protein 2 OS=	no	no	0.167	0.226	0.764	2e-09
Q39265	197	Zinc finger protein 6 OS=	no	no	0.413	0.426	0.347	1e-06
Q38895	204	Transcriptional regulator	no	no	0.162	0.161	0.515	0.0001
Q9LHS9	226	Probable transcriptional	no	no	0.142	0.128	0.586	0.0002
Q9SR34	172	Transcriptional regulator	no	no	0.157	0.186	0.5	0.0002

>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 33/135 (24%)

Query: 70  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSI---GFLFN------- 119
           +VFSCN+C RKFYSSQALGGHQNAHKRER  A+R Q ++M +SS+    F F        
Sbjct: 66  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRF 125

Query: 120 ----SVPLR-------SLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDM-IPWTPFML 167
               S+PL        +LG+Q HS + +      P+ + R   + S  F   I   P   
Sbjct: 126 ASMASLPLHGSVNNRSTLGIQAHSTIHK------PSFLGRQTTSLSHVFKQSIHQKP--- 176

Query: 168 EDTIDMFWPGSCHVD 182
             TI    P   H++
Sbjct: 177 --TIGKMLPEKFHLE 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 63/123 (51%), Gaps = 21/123 (17%)

Query: 63  SKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVP 122
           S  ++  K+FSCN+C R FYSSQALGGHQNAHKRER  A+R Q      S+ G  +   P
Sbjct: 52  STTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAFGHPYGFSP 111

Query: 123 L---------RSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWT--PFMLEDTI 171
           L         RSLG+Q HS+  + S   G      FG      +  I W+  PF  +  I
Sbjct: 112 LPFHGQYNNHRSLGIQAHSISHKLSSYNG------FGGH----YGQINWSRLPFDQQPAI 161

Query: 172 DMF 174
             F
Sbjct: 162 GKF 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 60  DRRSKPASGN-KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLF 118
           D +S     N +VFSCN+C RKFYSSQALGGHQNAHKRER  A+R  +   M       +
Sbjct: 46  DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPY 105

Query: 119 NSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGS 178
            +    SLG+Q HS +   + +    LV+RF      G + +P      +   D FWPGS
Sbjct: 106 -TYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGYFG-NTVPLFFDYDDGGSDFFWPGS 163

Query: 179 CH--VDNSSKPAPDLHNLE--LDLN 199
               V+ +  P   + + E  LDLN
Sbjct: 164 FRQVVEEAEAPVVVVASTESGLDLN 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 33/143 (23%)

Query: 65  PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSI---------- 114
           P+   +VFSCN+C RKFYSSQALGGHQNAHKRER  A+R    RM ++ +          
Sbjct: 78  PSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAM--RMGLAGVFPGRGSSSNY 135

Query: 115 -----GFLFNSVPL-----------RSLGVQPHSLV-DRSSGALGPNLVARFGDATSTGF 157
                    + +PL           R+LG++ HS   D S     P  + R     + G+
Sbjct: 136 AAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQGY 195

Query: 158 --DMIPWTPFMLEDTIDMFWPGS 178
             + IP+  ++ +D  +M WPGS
Sbjct: 196 FGNCIPF--YVEDDEAEMLWPGS 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 10/61 (16%)

Query: 63  SKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVP 122
           + PAS +++F C +C RKFY+SQALGGHQNAHKRER AARR         ++G L NS P
Sbjct: 30  AHPAS-HRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR---------NLGVLANSPP 79

Query: 123 L 123
           +
Sbjct: 80  I 80

May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 70  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARR 103
           +VFSCN+C RKFYSSQALGGHQNAHK ER  A++
Sbjct: 50  RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKK 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 48  LTAAAAAAGDSTDRRSKPASGN--KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQ 105
           L    +    S++ R    SG+  + + C +C R+F +SQALGGHQNAHK+ER   +R Q
Sbjct: 15  LLETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQ 74

Query: 106 ---------NHRMMMSSIGFLFNSVPLRSLGVQPH 131
                    +H     +   L    PL  L  QPH
Sbjct: 75  MLATRGLPRHHNFHPHTNPLLSAFAPLPHLLSQPH 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 70  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR 102
           + ++C+FC R+F S+QALGGH N H+R+R   R
Sbjct: 45  RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 77

Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 70 KVFSCNFCMRKFYSSQALGGHQNAHKRER 98
          + +SC+FC R+F S+QALGGH N H+R+R
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDR 81

Probable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 24/32 (75%)

Query: 72  FSCNFCMRKFYSSQALGGHQNAHKRERGAARR 103
           + C+FC+R F ++QALGGH N H+R+R   R+
Sbjct: 35  YVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQ 66

Activation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
147790933	248	hypothetical protein VITISV_001090 [Viti	0.921	0.754	0.562	8e-52
225438896	193	PREDICTED: zinc finger protein 7-like [V	0.921	0.968	0.562	1e-51
255567937	207	zinc finger protein, putative [Ricinus c	0.960	0.942	0.533	2e-43
225429309	189	PREDICTED: zinc finger protein 7-like [V	0.871	0.936	0.5	3e-40
302398659	187	C2H2L domain class transcription factor	0.802	0.871	0.497	9e-35
356514294	199	PREDICTED: zinc finger protein 7-like [G	0.935	0.954	0.430	4e-34
224103697	190	predicted protein [Populus trichocarpa]	0.935	1.0	0.465	4e-34
224056210	246	predicted protein [Populus trichocarpa]	0.935	0.772	0.465	5e-34
351721758	210	Cys2-His2 zinc finger protein [Glycine m	0.807	0.780	0.465	5e-33
255629956	210	unknown [Glycine max]	0.802	0.776	0.467	5e-33

>gi|147790933|emb|CAN77233.1| hypothetical protein VITISV_001090 [Vitis vinifera]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 140/199 (70%), Gaps = 12/199 (6%)

Query: 4   QEEEEAGQTSCNNLDAELK--ANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTDR 61
           Q EEEA + S NN DAE K  ++D   S    +G+WLSL L ++EA T      GD  D 
Sbjct: 5   QREEEANEVSSNNQDAESKTRSDDEKTSGDDNLGEWLSLSLSRNEAFTT-----GDG-DP 58

Query: 62  RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSV 121
           +SKPA GNK+FSCNFCMRKF+SSQALGGHQNAHKRERGAA+R+Q+HRMMM+++GF  NS+
Sbjct: 59  QSKPA-GNKIFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSHRMMMATMGFPLNSL 117

Query: 122 PLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHV 181
            +RSLG QPHSL  +  G  G  + ARF D  +TGF M  WTPF++E+ +D  WPGS HV
Sbjct: 118 TIRSLGAQPHSLAHK-PGREGTEVAARFNDP-NTGFRMA-WTPFVMEEAMDSIWPGSFHV 174

Query: 182 DNSSKPAPDLHNLELDLNL 200
           D     A D H L+L+L+L
Sbjct: 175 DKLPSQASDQHKLDLNLSL 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438896|ref|XP_002279158.1| PREDICTED: zinc finger protein 7-like [Vitis vinifera]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 140/199 (70%), Gaps = 12/199 (6%)

Query: 4   QEEEEAGQTSCNNLDAELK--ANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTDR 61
           Q EEEA + S NN DAE K  ++D   S    +G+WLSL L ++EA T      GD  D 
Sbjct: 5   QREEEANEVSSNNQDAESKTRSDDEKTSGDDNLGEWLSLSLSRNEAFTT-----GDG-DP 58

Query: 62  RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSV 121
           +SKPA GNK+FSCNFCMRKF+SSQALGGHQNAHKRERGAA+R+Q+HRMMM+++GF  NS+
Sbjct: 59  QSKPA-GNKIFSCNFCMRKFFSSQALGGHQNAHKRERGAAKRYQSHRMMMATMGFPLNSL 117

Query: 122 PLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHV 181
            +RSLG QPHSL  +  G  G  + ARF D  +TGF M  WTPF++E+ +D  WPGS HV
Sbjct: 118 TIRSLGAQPHSLAHK-PGREGTEVAARFNDP-NTGFRMA-WTPFVMEEAMDSIWPGSFHV 174

Query: 182 DNSSKPAPDLHNLELDLNL 200
           D     A D H L+L+L+L
Sbjct: 175 DKLPSQASDQHKLDLNLSL 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567937|ref|XP_002524946.1| zinc finger protein, putative [Ricinus communis] gi|223535781|gb|EEF37443.1| zinc finger protein, putative [Ricinus communis]

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/212 (53%), Positives = 142/212 (66%), Gaps = 17/212 (8%)

Query: 1   MTYQEEEE--AGQTSCNNLDAELKANDNSESRIKEVGD----WLSLGLKKDEALTAAAA- 53
           MT+Q EE+  A  +S N+ DAE K   N + R  +V D    WLSLGL + + ++ A   
Sbjct: 1   MTFQREEQETAEISSLNSHDAESKPT-NIDHRGSDVDDNIKEWLSLGLSRRDPVSTATGD 59

Query: 54  ----AAGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRM 109
               ++       +  AS  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAA+RFQ+HRM
Sbjct: 60  CEPESSSSKPATSAAAASTKKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAKRFQSHRM 119

Query: 110 MMSS-IGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLE 168
           MM+S +GF FN + +RSLGVQ HSLV + S   G N VARF +A +TGF +  WTPFMLE
Sbjct: 120 MMASPVGFPFNPLSVRSLGVQAHSLVHKPSRD-GSNSVARFSNA-NTGFGLA-WTPFMLE 176

Query: 169 DTIDMFWPGSCHVDNSSKPAPDLHNLELDLNL 200
           + +D  WPGS  VD   + A DLH L+L+L+L
Sbjct: 177 EAMDFVWPGSFRVDR-EQAASDLHKLDLNLSL 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429309|ref|XP_002270534.1| PREDICTED: zinc finger protein 7-like [Vitis vinifera]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 136/202 (67%), Gaps = 25/202 (12%)

Query: 8   EAGQTSCNNLDAELKANDNSESRIKE--VGDWLSLGLKKDEALTAAAAAAGDSTDRRSKP 65
           E  +TS N     L+ ++N +   +E   G+WL+L L ++   TA        +D +S+P
Sbjct: 6   EGAETSVNKQQGGLRISENGDEGAEEDNPGEWLNLSLGRNLPSTAL------DSDPQSRP 59

Query: 66  ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRS 125
            S +KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARR+Q+HR MM+ +G   N+ P+RS
Sbjct: 60  TS-SKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRYQSHR-MMAMMGLPMNT-PIRS 116

Query: 126 LGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHV---- 181
           LGV+PHSLV + +   G  +VARF D ++TGF M  WTPF LE+T+D+ WPGS  +    
Sbjct: 117 LGVRPHSLVQKPNRD-GTAIVARFDD-SNTGFGMT-WTPFTLEETMDVMWPGSYRLEQQP 173

Query: 182 -DNSSKPAPDLHNLELDLNLKL 202
            + +S+P      L+LDLNL+L
Sbjct: 174 SEQTSEP------LKLDLNLRL 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398659|gb|ADL36624.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 113/179 (63%), Gaps = 16/179 (8%)

Query: 24  NDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTDRRSKPASGNKVFSCNFCMRKFYS 83
           +D  E+     G+WL+L L         + +A    D +++PASG KVFSCNFCMRKF+S
Sbjct: 25  DDKEETEDLNRGEWLNLSL--------GSISAQGQIDSQARPASG-KVFSCNFCMRKFFS 75

Query: 84  SQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP 143
           SQALGGHQNAHKRERGAARR+Q+ R +MS +GF F +  +RSL VQPHSLV + S     
Sbjct: 76  SQALGGHQNAHKRERGAARRYQSQR-LMSMMGFPFTTSTVRSLSVQPHSLVHKPSRE-ET 133

Query: 144 NLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCHVDNSSKPAPDLHNLELDLNLKL 202
           +LVARF DA +    M    PF L+D +D  WPGS  +D      P     +LDLNL+L
Sbjct: 134 SLVARFSDANARFGTM----PFTLDDVMDSMWPGSFRLD-PQVLEPQSEPSKLDLNLRL 187

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514294|ref|XP_003525841.1| PREDICTED: zinc finger protein 7-like [Glycine max]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 122/209 (58%), Gaps = 19/209 (9%)

Query: 1   MTYQEEEEAGQTSCNNLDAELKANDNSESRI----KEVGDWLSLGLKKDEALTAAAAAAG 56
           MT+  EE       ++  ++  AN+N+E       + +G+WLSLGL  D  +   AAA  
Sbjct: 1   MTFIREE---YDQVDDHGSQNNANNNTEIVTTPEGENMGEWLSLGLTGDINMPVEAAAEQ 57

Query: 57  DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGF 116
           + +   S+P   NK FSCNFCMRKFYSSQALGGHQNAHKRER AAR +  H+     +G 
Sbjct: 58  NLS---SRPLH-NKEFSCNFCMRKFYSSQALGGHQNAHKREREAARSY--HQSHHHRMGL 111

Query: 117 LFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFG-----DATSTGFDMIPWTPFMLEDTI 171
            + S+  RSLG+QPHSLV + +      +VARF      +    G     WTPFMLE  +
Sbjct: 112 AYTSLASRSLGIQPHSLVHKPNRERSA-MVARFSSNDANNGVGIGSVASSWTPFMLEQAV 170

Query: 172 DMFWPGSCHVDNSSKPAPDLHNLELDLNL 200
           D++WPGS  VD   + + D+  ++LDL L
Sbjct: 171 DLYWPGSFRVDLPKQESSDVKKIDLDLRL 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103697|ref|XP_002313159.1| predicted protein [Populus trichocarpa] gi|222849567|gb|EEE87114.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 126/202 (62%), Gaps = 12/202 (5%)

Query: 1   MTYQEEEEAGQTSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTD 60
           M +QEE    +TS +  +     N N        G+WL+L L  +     + + AGD  D
Sbjct: 1   MIFQEEAIEIKTSKHQNEIVGNHNSNEGYNDNNPGEWLNLRLGGN-----SPSTAGD-YD 54

Query: 61  RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNS 120
            +S+P S +KVFSCNFC RKF+SSQALGGHQNAHKRERGAARR+ + R MM+ +G   NS
Sbjct: 55  SQSRPTS-SKVFSCNFCRRKFFSSQALGGHQNAHKRERGAARRYHSQR-MMTMMGLPINS 112

Query: 121 VPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCH 180
              RSLGV+PH+LV + +    P +  RF +A + GF ++ W PF L+DT D+ WPGS  
Sbjct: 113 PMARSLGVRPHALVHKPTRDGTP-IGGRFNEA-NPGF-VMSWMPFALDDTADLTWPGSFR 169

Query: 181 VDNSSKPAPDLHNLELDLNLKL 202
           +D S  P     +L+LDLNL+L
Sbjct: 170 LD-SQLPETSSESLKLDLNLRL 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056210|ref|XP_002298757.1| predicted protein [Populus trichocarpa] gi|222846015|gb|EEE83562.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/202 (46%), Positives = 123/202 (60%), Gaps = 12/202 (5%)

Query: 1   MTYQEEEEAGQTSCNNLDAELKANDNSESRIKEVGDWLSLGLKKDEALTAAAAAAGDSTD 60
           M +QEE    +T  +  +     N N        G+WL+L L  +     + + AGD  D
Sbjct: 57  MIFQEEAIEIKTLKHQNEMLNSNNSNEGYDDNNPGEWLNLSLGGN-----SPSTAGD-YD 110

Query: 61  RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNS 120
            +S+P S +KVFSCNFC RKF+SSQALGGHQNAHKRERGAARR+ + R MM+ +G   NS
Sbjct: 111 SQSRPTS-SKVFSCNFCRRKFFSSQALGGHQNAHKRERGAARRYHSQR-MMTIMGLPVNS 168

Query: 121 VPLRSLGVQPHSLVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDTIDMFWPGSCH 180
              RSLGV+PH+LV + +   G  +  RF +A S GFDM  W PF ++DT D+ WPGS  
Sbjct: 169 PMARSLGVRPHTLVHKPNRD-GTAIAGRFNEA-SPGFDM-SWMPFTVDDTTDLTWPGSFR 225

Query: 181 VDNSSKPAPDLHNLELDLNLKL 202
           +D    P      L+LDLNL+L
Sbjct: 226 LD-PQPPETSSEPLKLDLNLRL 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721758|ref|NP_001237732.1| Cys2-His2 zinc finger protein [Glycine max] gi|100801742|emb|CAK24965.1| Cys2-His2 zinc finger protein [Glycine max]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 117/200 (58%), Gaps = 36/200 (18%)

Query: 23  ANDNSESRIKEV---------GDWLSLGLKKDEALTAAAAAAGDSTDRRSKP--ASGNKV 71
            + NS S I E+         G+WLSLGLK D  + A      +  +  S+P  ++ NKV
Sbjct: 25  GSQNSASNITEIVTTPEGENLGEWLSLGLKGDINMPA------EEQNSSSRPLHSNNNKV 78

Query: 72  FSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLF-NSVPLRSLGVQP 130
           FSCNFCMRKFYSSQALGGHQNAHKRER AAR +  H+     IGF +  S+  RSLG++P
Sbjct: 79  FSCNFCMRKFYSSQALGGHQNAHKREREAARSY--HQSHHHRIGFSYTTSLATRSLGIKP 136

Query: 131 HSLVDRSSGALGPN-----LVARF--GDATSTGFDMIP--WTPFMLEDTIDMFWPGSCHV 181
           HSLV R      PN     +VARF   DA + G   +   WTPFMLE  +D +WPGS   
Sbjct: 137 HSLVHR------PNRERSAMVARFSSSDAINVGVGSVASSWTPFMLEQAVDFYWPGSFRG 190

Query: 182 DNSSK-PAPDLHNLELDLNL 200
           D   K  + D+  ++LDL L
Sbjct: 191 DLLPKQESSDVKKIDLDLRL 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629956|gb|ACU15330.1| unknown [Glycine max]

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 117/199 (58%), Gaps = 36/199 (18%)

Query: 24  NDNSESRIKEV---------GDWLSLGLKKDEALTAAAAAAGDSTDRRSKP--ASGNKVF 72
           + NS S I E+         G+WLSLGLK D  + A      +  +  S+P  ++ NKVF
Sbjct: 26  SQNSASNITEIVTTPEGENLGEWLSLGLKGDINMPA------EEQNSSSRPLHSNNNKVF 79

Query: 73  SCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLF-NSVPLRSLGVQPH 131
           SCNFCMRKFYSSQALGGHQNAHKRER AAR +  H+     IGF +  S+  RSLG++PH
Sbjct: 80  SCNFCMRKFYSSQALGGHQNAHKREREAARSY--HQSHHHRIGFSYTTSLATRSLGIKPH 137

Query: 132 SLVDRSSGALGPN-----LVARF--GDATSTGFDMIP--WTPFMLEDTIDMFWPGSCHVD 182
           SLV R      PN     +VARF   DA + G   +   WTPFMLE  +D +WPGS   D
Sbjct: 138 SLVHR------PNRERSAMVARFSSSDAINVGVGSVASSWTPFMLEQAVDFYWPGSFRGD 191

Query: 183 NSSK-PAPDLHNLELDLNL 200
              K  + D+  ++LDL L
Sbjct: 192 LLPKQESSDVKKIDLDLRL 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2013820	260	ZFP4 "AT1G66140" [Arabidopsis	0.403	0.315	0.409	2.1e-18
TAIR|locus:2825107	209	ZFP7 "AT1G24625" [Arabidopsis	0.566	0.550	0.442	7.7e-16
TAIR|locus:2146960	235	ZFP3 "AT5G25160" [Arabidopsis	0.423	0.365	0.453	1.8e-14
TAIR|locus:2025777	228	ZFP1 "AT1G80730" [Arabidopsis	0.221	0.197	0.711	1e-13
TAIR|locus:2183780	272	AT5G10970 "AT5G10970" [Arabido	0.330	0.246	0.525	5e-13
TAIR|locus:2144168	191	GIS2 "AT5G06650" [Arabidopsis	0.487	0.518	0.367	7.4e-12
TAIR|locus:2159088	161	KNU "AT5G14010" [Arabidopsis t	0.241	0.304	0.576	1.3e-11
TAIR|locus:2156529	173	LATE "LATE FLOWERING" [Arabido	0.359	0.421	0.432	7.4e-11
TAIR|locus:2174547	150	ZFP2 "AT5G57520" [Arabidopsis	0.167	0.226	0.764	1.5e-10
TAIR|locus:2064579	257	ZFP8 "AT2G41940" [Arabidopsis	0.384	0.303	0.405	3.3e-10

TAIR|locus:2013820 ZFP4 "AT1G66140" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 36/88 (40%), Positives = 51/88 (57%)

Query:    16 NLDAELKANDNSESRIKEVGDWLSLGLKKDEALTXXXXXXGDSTDRRSKPASGNKVFSCN 75
             +L+  L  N+N+ + +      L+L       L+           ++ +P+   +VFSCN
Sbjct:    35 SLNLSLSFNNNNNNNLDLESSSLTL------PLSSTSESSNPEQQQQQQPSVSKRVFSCN 88

Query:    76 FCMRKFYSSQALGGHQNAHKRERGAARR 103
             +C RKFYSSQALGGHQNAHKRER  A+R
Sbjct:    89 YCQRKFYSSQALGGHQNAHKRERTLAKR 116

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2825107 ZFP7 "AT1G24625" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 54/122 (44%), Positives = 67/122 (54%)

Query:    60 DRRSKPASGN-KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLF 118
             D +S     N +VFSCN+C RKFYSSQALGGHQNAHKRER  A+R  +   M       +
Sbjct:    46 DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPY 105

Query:   119 NSVPLRSLGVQPHS-LVDRSSGALGPNLVARFGDATSTGFDMIPWTPFMLEDT-IDMFWP 176
                   SLG+Q HS L+  +     P LV+RF      G + +P   F  +D   D FWP
Sbjct:   106 TYTS-SSLGMQAHSGLLHHTLSQPQP-LVSRFHHQGYFG-NTVPLF-FDYDDGGSDFFWP 161

Query:   177 GS 178
             GS
Sbjct:   162 GS 163

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2146960 ZFP3 "AT5G25160" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 44/97 (45%), Positives = 55/97 (56%)

Query:    57 DSTD--RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSI 114
             D+T     S  ++  K+FSCN+C R FYSSQALGGHQNAHKRER  A+R Q      S+ 
Sbjct:    44 DTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAASASAF 103

Query:   115 GFLFNSVPL---------RSLGVQPHSLVDRSSGALG 142
             G  +   PL         RSLG+Q HS+  + S   G
Sbjct:   104 GHPYGFSPLPFHGQYNNHRSLGIQAHSISHKLSSYNG 140

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2025777 ZFP1 "AT1G80730" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query:    70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSI 114
             +VFSCN+C RKFYSSQALGGHQNAHKRER  A+R Q ++M +SS+
Sbjct:    66 RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSL 110

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009640 "photomorphogenesis" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2183780 AT5G10970 "AT5G10970" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 41/78 (52%), Positives = 51/78 (65%)

Query:    70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSS-IG--FLFNSVPL--- 123
             K+FSCN+C R FYSSQALGGHQNAHKRER  A+R Q  RM  ++  G  + F  VP    
Sbjct:   102 KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQ--RMASAAAFGHPYGFAPVPFHGQ 159

Query:   124 ---RSLGVQPHSLVDRSS 138
                R+LG+Q HS+  + S
Sbjct:   160 YSNRTLGIQAHSMSHKPS 177

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2144168 GIS2 "AT5G06650" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 39/106 (36%), Positives = 51/106 (48%)

Query:    64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPL 123
             K  +  K F C++C R F +SQALGGHQNAHKRER   +RF  H    +      N +  
Sbjct:    47 KDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAAFFHRQQNHIAA 106

Query:   124 RSLGVQPHSL--VDRSSGALGP----NLVARFGDATSTGFDM-IPW 162
               L    +SL  V  +   LG     N  A F    S+ ++  IPW
Sbjct:   107 SRLYEDRYSLEAVQINDARLGLCRMYNSSASFNRDRSSYYNRYIPW 152

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010026 "trichome differentiation" evidence=IMP

TAIR|locus:2159088 KNU "AT5G14010" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 34/59 (57%), Positives = 42/59 (71%)

Query:    65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPL 123
             PAS +++F C +C RKFY+SQALGGHQNAHKRER AARR         ++G L NS P+
Sbjct:    32 PAS-HRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR---------NLGVLANSPPI 80

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IMP

TAIR|locus:2156529 LATE "LATE FLOWERING" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query:    60 DRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFN 119
             ++  +  S  ++F C FC RKF+SSQALGGHQNAHK+ER AARR +     +++  FL +
Sbjct:    23 NKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNNDFL-H 81

Query:   120 SVPLRSLGVQPHSL 133
             ++P+       H L
Sbjct:    82 TLPVFLSSPSQHHL 95

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2174547 ZFP2 "AT5G57520" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query:    70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARR 103
             +VFSCN+C RKFYSSQALGGHQNAHK ER  A++
Sbjct:    50 RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKK 83

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2064579 ZFP8 "AT2G41940" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 3.3e-10, P = 3.3e-10
 Identities = 32/79 (40%), Positives = 44/79 (55%)

Query:    25 DNSESRIKEVGDWLSLGLKKDEALTXXXXXXGDSTDRRSKPASGNKVFSCNFCMRKFYSS 84
             DNS++   E  D  +   K DE+         +    + K  + N+ F C++C R F +S
Sbjct:    49 DNSDNLSAEPSDHQTT-TKNDESSENIKDKDKEKDKDKDKDNNNNRRFECHYCFRNFPTS 107

Query:    85 QALGGHQNAHKRERGAARR 103
             QALGGHQNAHKRER  A+R
Sbjct:   108 QALGGHQNAHKRERQHAKR 126

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010026 "trichome differentiation" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.65
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.53
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.19
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.11
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.09
KOG3576	267	consensus Ovo and related transcription factors [T	98.85
PHA02768	55	hypothetical protein; Provisional	98.85
KOG3576	267	consensus Ovo and related transcription factors [T	98.83
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	98.7
PHA00733	128	hypothetical protein	98.44
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.38
PHA00616	44	hypothetical protein	98.3
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.09
PHA00732	79	hypothetical protein	97.91
KOG3608	467	consensus Zn finger proteins [General function pre	97.9
KOG3608	467	consensus Zn finger proteins [General function pre	97.64
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.58
PLN03086	567	PRLI-interacting factor K; Provisional	97.58
PHA02768	55	hypothetical protein; Provisional	97.49
PHA00733	128	hypothetical protein	97.34
KOG3993	500	consensus Transcription factor (contains Zn finger	97.12
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.02
PLN03086	567	PRLI-interacting factor K; Provisional	97.01
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.95
PHA00616	44	hypothetical protein	96.91
smart00355	26	ZnF_C2H2 zinc finger.	96.62
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.48
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.31
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.28
PRK04860	160	hypothetical protein; Provisional	96.28
COG5048	467	FOG: Zn-finger [General function prediction only]	95.57
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	95.54
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.86
KOG3993	500	consensus Transcription factor (contains Zn finger	94.82
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.7
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.16
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.48
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.38
smart00355	26	ZnF_C2H2 zinc finger.	92.15
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.68
KOG2893	341	consensus Zn finger protein [General function pred	91.24
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.04
PRK04860	160	hypothetical protein; Provisional	88.36
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.31
PHA00732	79	hypothetical protein	85.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	85.05
KOG4167	907	consensus Predicted DNA-binding protein, contains	84.45
COG5048	467	FOG: Zn-finger [General function prediction only]	83.5

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.65  E-value=1.4e-17  Score=138.02  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             hhcccCCCCC---CcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           59 TDRRSKPASG---NKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        59 ~~~H~r~Htg---ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      +.+|+.+|-.   .+.+.|.+|+|.|....+|+.|+|+|+  -|    ..|..         |||+|.+.=.|+.|+|+|
T Consensus       146 LsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~----c~C~i---------CGKaFSRPWLLQGHiRTH  210 (279)
T KOG2462|consen  146 LSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LP----CECGI---------CGKAFSRPWLLQGHIRTH  210 (279)
T ss_pred             cchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CC----ccccc---------ccccccchHHhhcccccc
Confidence            7788877743   566888888888888888888888887  45    67777         888888888888888888


Q ss_pred             CCCCCCCCCcccc-cCCCCCCCccc---CCCccccccC-CCCCCCCCCcccCCC
Q 040864          136 RSSGALGPNLVAR-FGDATSTGFDM---IPWTPFMLED-TIDMFWPGSCHVDNS  184 (203)
Q Consensus       136 ~~~~~~~~~~~~~-f~~~~~~~~~~---~~~~p~~~~~-~~~~~~~~s~~~~~~  184 (203)
                      +|||||.|.-+.| |.+.++.|-||   ++.|+|.|.. ++.|.--+.|..|.+
T Consensus       211 TGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  211 TGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            8888888877544 66666433333   4788888888 888887777777764

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.53  E-value=8.8e-16  Score=127.33  Aligned_cols=80  Identities=14%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +..|+|+|+  -+++|.+|||.|.+.+-|+.|+|+||||||    |.|..         |+|+|..+++|+.|+++|.+-
T Consensus       177 LkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP----F~C~h---------C~kAFADRSNLRAHmQTHS~~  241 (279)
T KOG2462|consen  177 LKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKP----FSCPH---------CGKAFADRSNLRAHMQTHSDV  241 (279)
T ss_pred             HhhHhhccC--CCcccccccccccchHHhhcccccccCCCC----ccCCc---------ccchhcchHHHHHHHHhhcCC
Confidence            677889887  689999999999999999999999999999    88888         999999999999999999999


Q ss_pred             CCCCCCcccc-cCCCC
Q 040864          139 GALGPNLVAR-FGDAT  153 (203)
Q Consensus       139 ~~~~~~~~~~-f~~~~  153 (203)
                      |.|.|..+.+ |...+
T Consensus       242 K~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  242 KKHQCPRCGKSFALKS  257 (279)
T ss_pred             ccccCcchhhHHHHHH
Confidence            9999988666 54433

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.19  E-value=3.5e-12  Score=117.21  Aligned_cols=69  Identities=23%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             HhhcCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccc
Q 040864           52 AAAAGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH  131 (203)
Q Consensus        52 ~~~~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H  131 (203)
                      ++....++.+|.--|+|.|||+|.+|.|+|..+.+|..|+|.|.||||    |+|..         |+|.|+++....+|
T Consensus       903 ~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP----fQCdK---------ClKRFSHSGSYSQH  969 (1007)
T KOG3623|consen  903 AFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP----FQCDK---------CLKRFSHSGSYSQH  969 (1007)
T ss_pred             HHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc----chhhh---------hhhhcccccchHhh
Confidence            344677899999999999999999999999999999999999999999    99999         99999999999999


Q ss_pred             cc
Q 040864          132 SL  133 (203)
Q Consensus       132 ~r  133 (203)
                      |-
T Consensus       970 MN  971 (1007)
T KOG3623|consen  970 MN  971 (1007)
T ss_pred             hc
Confidence            84

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.11  E-value=2.1e-11  Score=112.25  Aligned_cols=90  Identities=17%  Similarity=0.292  Sum_probs=76.3

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc-
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL-  145 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~-  145 (203)
                      +.+-+|.|..|.|.|...+.|.+|.--|+|.||    |+|..         |.|+|.++.+|..|+|.|.|+|||.|.- 
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRP----yqC~i---------CkKAFKHKHHLtEHkRLHSGEKPfQCdKC  956 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRP----YQCII---------CKKAFKHKHHLTEHKRLHSGEKPFQCDKC  956 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCC----cccch---------hhHhhhhhhhhhhhhhhccCCCcchhhhh
Confidence            456789999999999999999999999999999    99999         9999999999999999999999999865 


Q ss_pred             ccccCCCCCCCccc----CCCccccccC
Q 040864          146 VARFGDATSTGFDM----IPWTPFMLED  169 (203)
Q Consensus       146 ~~~f~~~~~~~~~~----~~~~p~~~~~  169 (203)
                      ++||.+.....-||    .=.|||..+-
T Consensus       957 lKRFSHSGSYSQHMNHRYSYCKpyrEer  984 (1007)
T KOG3623|consen  957 LKRFSHSGSYSQHMNHRYSYCKPYREER  984 (1007)
T ss_pred             hhhcccccchHhhhccchhcccchhhcc
Confidence            88998655333343    2356666543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.09  E-value=3.2e-11  Score=112.39  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=63.0

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccc---cccccccCCcCCCCCCCCCCCcccccc
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNH---RMMMSSIGFLFNSVPLRSLGVQPHSLV  134 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~---~~~~~~~g~~C~k~F~~~~~L~~H~r~  134 (203)
                      .++-|.|+|+|||||+|.+||++|..+.+|+.|+.+|...-|+.-.+.|.   .         |-+.|.....|.+|+|+
T Consensus       620 aLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~i---------c~~kftn~V~lpQhIri  690 (958)
T KOG1074|consen  620 ALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFI---------CQKKFTNAVTLPQHIRI  690 (958)
T ss_pred             hhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhh---------hcccccccccccceEEe
Confidence            47889999999999999999999999999999999998776765556777   6         99999999999999999


Q ss_pred             cCCC
Q 040864          135 DRSS  138 (203)
Q Consensus       135 H~~~  138 (203)
                      |.+.
T Consensus       691 H~~~  694 (958)
T KOG1074|consen  691 HLGG  694 (958)
T ss_pred             ecCC
Confidence            9843

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.85  E-value=4.5e-10  Score=89.93  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcc
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLV  146 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~  146 (203)
                      .+...|.|.+|+|+|....-|.+|++.|..-|.    +-|..         |||.|+....|++|+|+|+|-|||.|..+
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr----~lct~---------cgkgfndtfdlkrh~rthtgvrpykc~~c  179 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR----HLCTF---------CGKGFNDTFDLKRHTRTHTGVRPYKCSLC  179 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHH----HHHhh---------ccCcccchhhhhhhhccccCccccchhhh
Confidence            345678999999999999999999999988777    67777         99999999999999999999999999885


Q ss_pred             cc-cCCC
Q 040864          147 AR-FGDA  152 (203)
Q Consensus       147 ~~-f~~~  152 (203)
                      .+ |.+.
T Consensus       180 ~kaftqr  186 (267)
T KOG3576|consen  180 EKAFTQR  186 (267)
T ss_pred             hHHHHhh
Confidence            54 5443

>PHA02768 hypothetical protein; Provisional

Probab=98.85  E-value=1.4e-09  Score=69.81  Aligned_cols=44  Identities=14%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQ  129 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~  129 (203)
                      -|.|..||+.|...++|..|+++|+  ++    ++|..         |++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~----~kc~~---------C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TN----LKLSN---------CKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--Cc----ccCCc---------ccceecccceeE
Confidence            3899999999999999999999999  67    88888         999999888775

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.83  E-value=1.7e-10  Score=92.37  Aligned_cols=64  Identities=22%  Similarity=0.305  Sum_probs=59.9

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-cc
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VD  135 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H  135 (203)
                      +.+|++.|...|.|.|..|||.|...-.|++|.|+|+|-||    |+|..         |+|+|.++..|..|.+ +|
T Consensus       133 lnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp----ykc~~---------c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  133 LNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP----YKCSL---------CEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             HHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc----cchhh---------hhHHHHhhccHHHHHHHHc
Confidence            56799999999999999999999999999999999999999    89999         9999999999999975 45

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=98.70  E-value=6.7e-09  Score=97.19  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             eecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      +.|.+||+.|...++|..|+|+|+|+||    |+|..         |+++|..+.+|+.||.+|....|+...
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KP----F~C~f---------C~~aFttrgnLKvHMgtH~w~q~~srr  939 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKP----FFCHF---------CEEAFTTRGNLKVHMGTHMWVQPPSRR  939 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCC----ccchh---------hhhhhhhhhhhhhhhccccccCCCccC
Confidence            6899999999999999999999999999    88988         999999999999999999988866665

>PHA00733 hypothetical protein

Probab=98.44  E-value=6.8e-08  Score=73.11  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      +.+|+..+ +.+||.|..|++.|.....|..|+++|  +++    +.|..         |++.|.....|..|++..+
T Consensus        62 l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~----~~C~~---------CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         62 LYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHS----KVCPV---------CGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             HHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcC--CcC----ccCCC---------CCCccCCHHHHHHHHHHhc
Confidence            55665554 489999999999999999999999987  456    78888         9999999999999987544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.38  E-value=4.1e-08  Score=53.78  Aligned_cols=25  Identities=24%  Similarity=0.699  Sum_probs=22.4

Q ss_pred             hhcccCCCCCCcceecCCCCccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYS   83 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~   83 (203)
                      +.+|+++|+++|||.|..|++.|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            6789999999999999999999863

...

>PHA00616 hypothetical protein

Probab=98.30  E-value=2.4e-07  Score=56.73  Aligned_cols=34  Identities=12%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCCCCCcccc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRERGAARRF  104 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~  104 (203)
                      ||+|..||+.|...+.|..|++.|+|++++.|.|
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            6899999999999999999999999999965554

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.09  E-value=1.5e-06  Score=47.46  Aligned_cols=26  Identities=15%  Similarity=0.161  Sum_probs=23.1

Q ss_pred             hHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCC
Q 040864           86 ALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLR  124 (203)
Q Consensus        86 ~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~  124 (203)
                      +|..|+++|+|+||    |.|..         |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~----~~C~~---------C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP----YKCPY---------CGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS----EEESS---------SSEEESS
T ss_pred             CHHHHhhhcCCCCC----CCCCC---------CcCeeCc
Confidence            58899999999999    88888         9999864

...

>PHA00732 hypothetical protein

Probab=97.91  E-value=6.7e-06  Score=57.06  Aligned_cols=46  Identities=20%  Similarity=0.189  Sum_probs=38.8

Q ss_pred             ceecCCCCccCCCchhHHHHHHh-hcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNA-HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~-H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      ||.|..|++.|.....|..|++. |.   +    +.|..         |++.|.   .|..|.+++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~----~~C~~---------CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L----TKCPV---------CNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C----CccCC---------CCCEeC---Chhhhhccc
Confidence            68999999999999999999984 65   4    57888         999998   478887654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=97.90  E-value=8.7e-07  Score=76.43  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             CCchhcccCC-CCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccc
Q 040864           56 GDSTDRRSKP-ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV  134 (203)
Q Consensus        56 ~~~~~~H~r~-Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~  134 (203)
                      ..++..|+|. |...|||+|..|.+.|...+.|.+|..+|. +..    |+|..       ..|...|.....|++|++-
T Consensus       276 ~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~----y~C~h-------~~C~~s~r~~~q~~~H~~e  343 (467)
T KOG3608|consen  276 ASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTV----YQCEH-------PDCHYSVRTYTQMRRHFLE  343 (467)
T ss_pred             hHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccc----eecCC-------CCCcHHHHHHHHHHHHHHH
Confidence            3347888875 677889999999999999999999988887 445    66655       3377788888888888875


Q ss_pred             cC-CCCC--CCCCcccccCCC
Q 040864          135 DR-SSGA--LGPNLVARFGDA  152 (203)
Q Consensus       135 H~-~~~~--~~~~~~~~f~~~  152 (203)
                      |+ |..|  |.|-.+.||+..
T Consensus       344 vhEg~np~~Y~CH~Cdr~ft~  364 (467)
T KOG3608|consen  344 VHEGNNPILYACHCCDRFFTS  364 (467)
T ss_pred             hccCCCCCceeeecchhhhcc
Confidence            43 5443  778888887643

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=97.64  E-value=1.1e-06  Score=75.74  Aligned_cols=46  Identities=22%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhc--CCCCCcccccccc
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHK--RERGAARRFQNHR  108 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~--gekp~~c~~~C~~  108 (203)
                      +.+|.|.|+++|...|+.||.-|.....|-.|.|-.+  ...+    |+|..
T Consensus       195 LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~----fqC~~  242 (467)
T KOG3608|consen  195 LREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNS----FQCAQ  242 (467)
T ss_pred             HHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCc----hHHHH
Confidence            8999999999999999999999999999999987443  3456    55554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.58  E-value=3.9e-05  Score=40.22  Aligned_cols=23  Identities=30%  Similarity=0.688  Sum_probs=21.7

Q ss_pred             eecCCCCccCCCchhHHHHHHhh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      |.|..|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.58  E-value=2.6e-05  Score=71.95  Aligned_cols=67  Identities=9%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      +....++.+.|..|++.|. ...|..|+++|+  +|+.|+              |++.| .+..|..|+++|.+.+|+.|
T Consensus       446 ~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp--------------Cg~~~-~R~~L~~H~~thCp~Kpi~C  507 (567)
T PLN03086        446 RVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP--------------CGVVL-EKEQMVQHQASTCPLRLITC  507 (567)
T ss_pred             eccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC--------------CCCCc-chhHHHhhhhccCCCCceeC
Confidence            3344566778999999885 577889988874  774443              66544 55788889888999998888


Q ss_pred             Ccccc
Q 040864          144 NLVAR  148 (203)
Q Consensus       144 ~~~~~  148 (203)
                      .-|..
T Consensus       508 ~fC~~  512 (567)
T PLN03086        508 RFCGD  512 (567)
T ss_pred             CCCCC
Confidence            87654

>PHA02768 hypothetical protein; Provisional

Probab=97.49  E-value=1.7e-05  Score=50.92  Aligned_cols=35  Identities=9%  Similarity=0.077  Sum_probs=29.7

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCccccc
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARF  149 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~~f  149 (203)
                      |.|..         ||+.|+++..|..|+++|+  +++.+..+++.
T Consensus         6 y~C~~---------CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~   40 (55)
T PHA02768          6 YECPI---------CGEIYIKRKSMITHLRKHN--TNLKLSNCKRI   40 (55)
T ss_pred             cCcch---------hCCeeccHHHHHHHHHhcC--CcccCCcccce
Confidence            67888         9999999999999999999  56667666654

>PHA00733 hypothetical protein

Probab=97.34  E-value=4.2e-05  Score=57.87  Aligned_cols=72  Identities=11%  Similarity=-0.030  Sum_probs=51.9

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHH--HH---hhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGH--QN---AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL  133 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H--~r---~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r  133 (203)
                      +.++-......+++.|.+|.+.|.....|..|  ++   .+.+.+|    |.|..         |++.|.....|..|++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP----y~C~~---------Cgk~Fss~s~L~~H~r   94 (128)
T PHA00733         28 LKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP----YVCPL---------CLMPFSSSVSLKQHIR   94 (128)
T ss_pred             hhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC----ccCCC---------CCCcCCCHHHHHHHHh
Confidence            34443333456889999999999888777766  22   2334778    88888         9999999999999998


Q ss_pred             ccCCCCCCCCCc
Q 040864          134 VDRSSGALGPNL  145 (203)
Q Consensus       134 ~H~~~~~~~~~~  145 (203)
                      +|  ..++.|..
T Consensus        95 ~h--~~~~~C~~  104 (128)
T PHA00733         95 YT--EHSKVCPV  104 (128)
T ss_pred             cC--CcCccCCC
Confidence            76  23344444

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.12  E-value=6.1e-05  Score=66.49  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhc--------CCCCCccc---------------------cccccc
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHK--------RERGAARR---------------------FQNHRM  109 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~--------gekp~~c~---------------------~~C~~~  109 (203)
                      +.+|.-...-..-|+|..|+|.|....+|..|.|-|.        +..|-+..                     |.|.. 
T Consensus       283 LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~-  361 (500)
T KOG3993|consen  283 LAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT-  361 (500)
T ss_pred             HhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHH-
Confidence            5666543333445999999999999999999999875        22331111                     33444 


Q ss_pred             cccccCCcCCCCCCCCCCCcccccccCC
Q 040864          110 MMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       110 ~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                              |+|.|.+..-|++|+.+|+-
T Consensus       362 --------C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  362 --------CGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             --------hhhhhHHHHHHHHhHHhhhc
Confidence                    99999999999999988863

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.02  E-value=0.00027  Score=38.47  Aligned_cols=25  Identities=36%  Similarity=0.642  Sum_probs=23.2

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999998774

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.01  E-value=0.00055  Score=63.38  Aligned_cols=73  Identities=14%  Similarity=0.118  Sum_probs=57.4

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCC----------CCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLR----------SLGV  128 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~----------~~~L  128 (203)
                      +..|+++|+  +++.|+ ||+.+ ....|..|+++|..+|+    +.|..         |++.|..          ...|
T Consensus       468 LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp----i~C~f---------C~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        468 MEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRL----ITCRF---------CGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             HHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCc----eeCCC---------CCCccccCccccchhhhhhhH
Confidence            678888874  789999 99755 56889999999999999    66666         8888842          3478


Q ss_pred             cccccccCCCCCCCCCccccc
Q 040864          129 QPHSLVDRSSGALGPNLVARF  149 (203)
Q Consensus       129 ~~H~r~H~~~~~~~~~~~~~f  149 (203)
                      +.|..++ |.+++.|..|.+.
T Consensus       531 t~HE~~C-G~rt~~C~~Cgk~  550 (567)
T PLN03086        531 SEHESIC-GSRTAPCDSCGRS  550 (567)
T ss_pred             HHHHHhc-CCcceEccccCCe
Confidence            8998886 8888888776554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.95  E-value=0.00056  Score=35.53  Aligned_cols=23  Identities=35%  Similarity=0.742  Sum_probs=19.7

Q ss_pred             eecCCCCccCCCchhHHHHHHhh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      |.|.+|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999876

...

>PHA00616 hypothetical protein

Probab=96.91  E-value=6.3e-05  Score=46.10  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=28.0

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |+|..         ||+.|..++.|..|++.|++++++.+
T Consensus         2 YqC~~---------CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLR---------CGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             Cccch---------hhHHHhhHHHHHHHHHHhcCCCccce
Confidence            78999         99999999999999999999986543

>smart00355 ZnF_C2H2 zinc finger

Probab=96.62  E-value=0.0015  Score=34.33  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=22.1

Q ss_pred             eecCCCCccCCCchhHHHHHHhhc
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999999875

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.48  E-value=0.0029  Score=54.35  Aligned_cols=53  Identities=17%  Similarity=0.339  Sum_probs=43.9

Q ss_pred             CCcceecCC--CCccCCCchhHHHHHHh-h------------------cCCCCCccccccccccccccCCcCCCCCCCCC
Q 040864           68 GNKVFSCNF--CMRKFYSSQALGGHQNA-H------------------KRERGAARRFQNHRMMMSSIGFLFNSVPLRSL  126 (203)
Q Consensus        68 gekp~~C~~--Cgk~F~~~~~L~~H~r~-H------------------~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~  126 (203)
                      ++|||+|++  |.|++.....|+-|+.- |                  ...||    |+|..         |+|.+..-.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KP----YrCev---------C~KRYKNlN  412 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP----YRCEV---------CDKRYKNLN  412 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCc----eeccc---------cchhhccCc
Confidence            369999997  99999999999988752 3                  12366    89999         999999999


Q ss_pred             CCccccc
Q 040864          127 GVQPHSL  133 (203)
Q Consensus       127 ~L~~H~r  133 (203)
                      +|+-|..
T Consensus       413 GLKYHr~  419 (423)
T COG5189         413 GLKYHRK  419 (423)
T ss_pred             cceeccc
Confidence            9999864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.31  E-value=0.0038  Score=39.33  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=25.0

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +..+.|..|++|+..+.+..+|.+|+.++.+.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3567899999999999999999999998888777

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.28  E-value=0.0018  Score=41.42  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             ceecCCCCccCCCchhHHHHHH-hhcCC-CCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN-AHKRE-RGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r-~H~ge-kp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      .|.|++|++. .....|..|.. .|..+ +.    +.|..         |...+..  +|..|+++++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~~~~~~----v~CPi---------C~~~~~~--~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHRSESKN----VVCPI---------CSSRVTD--NLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCcCCCCC----ccCCC---------chhhhhh--HHHHHHHHhc
Confidence            4899999995 55678999976 46654 34    77888         9876553  7888887765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PRK04860 hypothetical protein; Provisional

Probab=96.28  E-value=0.0032  Score=49.42  Aligned_cols=40  Identities=13%  Similarity=0.253  Sum_probs=34.3

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSL  126 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~  126 (203)
                      -+|.|. |++   ....+.+|.++|+++++    |.|..         |++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~----YrC~~---------C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV----YRCRR---------CGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCcc----EECCC---------CCceeEEec
Confidence            479998 997   77789999999999999    88888         999887543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.57  E-value=0.0082  Score=52.19  Aligned_cols=62  Identities=18%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             cceecCCCCccCCCchhHHHHHH--hhcCC--CCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQN--AHKRE--RGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r--~H~ge--kp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      .++.|..|...|.....|..|.+  .|+++  +|+.|++.  .         |++.|.+...+..|..+|.+-++..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYS--L---------CGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeecc--C---------CCccccccccccCCcccccCCCccc
Confidence            57899999999999999999999  89999  99666654  5         9999999999999999998877543

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.54  E-value=0.0004  Score=36.26  Aligned_cols=18  Identities=6%  Similarity=-0.104  Sum_probs=16.8

Q ss_pred             CCCCCCCCCCCccccccc
Q 040864          118 FNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H  135 (203)
                      |++.|.++..|..|+++|
T Consensus         6 C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    6 CGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             TTEEESSHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHhHC
Confidence            999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.86  E-value=0.012  Score=31.10  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=21.0

Q ss_pred             eecCCCCccCCCchhHHHHHHhh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      |.|..|.+.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999998754

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=94.82  E-value=0.0036  Score=55.55  Aligned_cols=100  Identities=10%  Similarity=0.046  Sum_probs=66.3

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcccccC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVARFG  150 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~~f~  150 (203)
                      -|.|..|...|-..-.|..|.-.-.--.-    |+|..         |+|.|+-..+|..|.|.|++...........-.
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vE----YrCPE---------C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k  333 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVE----YRCPE---------CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPK  333 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEee----ecCCc---------ccccccCchhhhhhhcccCCchhhhhcCCCChh
Confidence            38999999999999999988632111122    89999         999999999999999999875422211111000


Q ss_pred             CC--------CCCCccc-CCCccccccC-CCCCCCCCCcccCC
Q 040864          151 DA--------TSTGFDM-IPWTPFMLED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       151 ~~--------~~~~~~~-~~~~p~~~~~-~~~~~~~~s~~~~~  183 (203)
                      +.        .+.+-+- ....-|.|-. ++.|..-..||.|+
T Consensus       334 ~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHq  376 (500)
T KOG3993|consen  334 QAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ  376 (500)
T ss_pred             hhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhH
Confidence            00        0001110 1223588988 89999989999985

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.70  E-value=0.05  Score=28.47  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=18.2

Q ss_pred             eecCCCCccCCCchhHHHHHHhhc
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |+|..|..... ...|..|++.|.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999998887 889999998754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.16  E-value=0.0041  Score=32.09  Aligned_cols=19  Identities=5%  Similarity=-0.064  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCCcccccccC
Q 040864          118 FNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~  136 (203)
                      |++.|.....|..|+++|+
T Consensus         6 C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    6 CGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             TS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCcHHHHHHHHHhhC
Confidence            9999999999999998764

...

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.48  E-value=0.088  Score=28.18  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=17.6

Q ss_pred             eecCCCCccCCCchhHHHHHHh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 67789999764

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.38  E-value=0.01  Score=32.03  Aligned_cols=25  Identities=12%  Similarity=0.052  Sum_probs=22.5

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|..         |++.|.....|..|++.|.+
T Consensus         2 ~~C~~---------C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    2 FECDE---------CGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             EEETT---------TTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCc---------cCCccCChhHHHHHhHHhcC
Confidence            77888         99999999999999998854

>smart00355 ZnF_C2H2 zinc finger

Probab=92.15  E-value=0.017  Score=29.99  Aligned_cols=19  Identities=11%  Similarity=0.017  Sum_probs=17.4

Q ss_pred             CCCCCCCCCCCcccccccC
Q 040864          118 FNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~  136 (203)
                      |++.|.....|..|+++|.
T Consensus         6 C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        6 CGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CcchhCCHHHHHHHHHHhc
Confidence            9999999999999998775

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.68  E-value=0.034  Score=30.11  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.7

Q ss_pred             eecCCCCccCCCchhHHHHHHh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999988764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.24  E-value=0.089  Score=43.72  Aligned_cols=47  Identities=28%  Similarity=0.458  Sum_probs=39.1

Q ss_pred             ecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccc-ccccC
Q 040864           73 SCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH-SLVDR  136 (203)
Q Consensus        73 ~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H-~r~H~  136 (203)
                      .|-+|.+-|-....|..|++.    |-    |+|..         |.|....-.+|..| +.+|+
T Consensus        12 wcwycnrefddekiliqhqka----kh----fkchi---------chkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KH----FKCHI---------CHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----cc----ceeee---------ehhhhccCCCceeehhhhhh
Confidence            599999999999999999874    44    89999         99987778888888 45564

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.04  E-value=0.02  Score=40.09  Aligned_cols=54  Identities=22%  Similarity=0.246  Sum_probs=18.3

Q ss_pred             ecCCCCccCCCchhHHHHHHh-hcCCCCC------------------ccccccccccccccCCcCCCCCCCCCCCccccc
Q 040864           73 SCNFCMRKFYSSQALGGHQNA-HKRERGA------------------ARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL  133 (203)
Q Consensus        73 ~C~~Cgk~F~~~~~L~~H~r~-H~gekp~------------------~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r  133 (203)
                      +|..|+..|.....|..|+.. |.-..+-                  .-.+.|..         |++.|.....|..|++
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~---------C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPY---------CNKTFRSREALQEHMR   71 (100)
T ss_dssp             ------------------------------------------------SSEEBSS---------SS-EESSHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCc---------cCCCCcCHHHHHHHHc
Confidence            477888888888888888753 3211110                  00134555         9999999999999998


Q ss_pred             cc
Q 040864          134 VD  135 (203)
Q Consensus       134 ~H  135 (203)
                      .+
T Consensus        72 ~~   73 (100)
T PF12756_consen   72 SK   73 (100)
T ss_dssp             HT
T ss_pred             Cc
Confidence            64

>PRK04860 hypothetical protein; Provisional

Probab=88.36  E-value=0.12  Score=40.51  Aligned_cols=27  Identities=19%  Similarity=0.481  Sum_probs=23.9

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCc
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSS   84 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~   84 (203)
                      +..+|.++|+++++|.|..|++.|...
T Consensus       130 ~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        130 TVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             HHHHHHHHhcCCccEECCCCCceeEEe
Confidence            378999999999999999999988654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.31  E-value=0.31  Score=27.58  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             ceecCCCCccCCCchhHHHHHH
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      +|.|..|++.|.....+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5889999999999999988875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PHA00732 hypothetical protein

Probab=85.61  E-value=0.32  Score=33.62  Aligned_cols=35  Identities=6%  Similarity=0.030  Sum_probs=26.4

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccc-cCCCCCCCCCc-ccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV-DRSSGALGPNL-VARFG  150 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~-H~~~~~~~~~~-~~~f~  150 (203)
                      |.|..         |++.|.+...|+.|++. |.+   +.|.. ...|.
T Consensus         2 y~C~~---------Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~   38 (79)
T PHA00732          2 FKCPI---------CGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR   38 (79)
T ss_pred             ccCCC---------CCCccCCHHHHHHHhhcccCC---CccCCCCCEeC
Confidence            77888         99999999999999984 664   34555 33454

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=85.05  E-value=0.66  Score=32.18  Aligned_cols=24  Identities=33%  Similarity=0.751  Sum_probs=21.4

Q ss_pred             ceecCCCCccCCCchhHHHHHHhh
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      .+.|..|++.|.....|..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            699999999999999999999864

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=84.45  E-value=0.46  Score=45.27  Aligned_cols=26  Identities=23%  Similarity=0.681  Sum_probs=23.4

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      -.|.|..|+|.|.....+..||+.|.
T Consensus       791 giFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  791 GIFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence            35899999999999999999999985

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.50  E-value=0.91  Score=39.30  Aligned_cols=61  Identities=21%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             CCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      ..+++.|..|...|....+...|.++|+++++    +.|..     .+  |.+.|.....+..|.+.|+...
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~   90 (467)
T COG5048          30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKP----SQCSY-----SG--CDKSFSRPLELSRHLRTHHNNP   90 (467)
T ss_pred             CCchhhcccccccccccchhhhhcccccccCC----ccccc-----cc--cccccCCcchhhhhcccccccc
Confidence            35678999999999999999999999999999    55544     22  7788888888888888876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	2e-17

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A Length = 39

 Score = 71.7 bits (176), Expect = 2e-17
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 70  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR 102
           + ++C+FC R+F S+QALGGH N H+R+R   R
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.72
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.62
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.6
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.59
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.58
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.54
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.53
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.53
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.5
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.5
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.49
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.48
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.48
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.46
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.46
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.45
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.44
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.44
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.43
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.43
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.42
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.42
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.42
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.4
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.4
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.39
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.39
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.39
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.39
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.38
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.38
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.36
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.35
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.35
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.33
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.32
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.31
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.31
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.3
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.3
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.3
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.3
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.28
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.27
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.27
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.27
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.26
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.26
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.25
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.25
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.25
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.24
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.24
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.24
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.24
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.22
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.22
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.22
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.21
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.21
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.21
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.2
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.19
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.16
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.16
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.15
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.14
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.13
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.12
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.11
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.09
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.08
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.07
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.02
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.01
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.99
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.98
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.98
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.96
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.96
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.92
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.9
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.89
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.86
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.86
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.83
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.79
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.77
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.76
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.75
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.74
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.74
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.74
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.73
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.73
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.73
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.72
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.72
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.72
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.71
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.7
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.7
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.69
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.68
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.68
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.68
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.68
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.68
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.68
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.68
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.67
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.66
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.66
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.66
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.65
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.65
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.65
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.64
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.63
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.63
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.62
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.62
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.62
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.61
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.58
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.58
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.55
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.51
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.51
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.51
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.5
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.5
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.5
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.48
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.48
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.47
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.46
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.46
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.45
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.44
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.44
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.41
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.38
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.37
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.72
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.37
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.36
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.36
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.35
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.34
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.34
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.32
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.32
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.3
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.3
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.27
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.27
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.25
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.25
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.25
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.22
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.21
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.2
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.19
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.19
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.12
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.12
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.11
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.39
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.07
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.06
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.02
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.99
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.98
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.96
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.94
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.89
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.87
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.86
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.85
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.96
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.95
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.73
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.59
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.56
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.53
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.49
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.47
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.47
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.57
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.41
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.36
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.31
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.29
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.26
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	96.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.98
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	96.69
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.67
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	95.6
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.44
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.15
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	91.38
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	84.24
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	83.5
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	81.17
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	80.78

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.72  E-value=7.7e-19  Score=115.06  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=56.1

Q ss_pred             CCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .||||.|.+|++.|.....|..|+++|+|+||    |.|..         |++.|.+.+.|..|+++|++++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp----~~C~~---------C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP----RSCPE---------CGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCC----EECTT---------TCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcC----eECCC---------CCCCcCCHHHHHHHhCccCCCC
Confidence            48999999999999999999999999999999    89989         9999999999999999999986

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.62  E-value=1.8e-17  Score=125.04  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=80.2

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      ...|.++|+|+++|.|.+|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|+++
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~   76 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK----YPCRY---------CEKVFPLAEYRTKHEIHHTGE   76 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC----EECSS---------SSCEESSHHHHHHHHHHHHTC
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC----eeCCc---------cCeecccccchhhhccccCCC
Confidence            45667788999999999999999999999999999999999    88888         999999999999999999999


Q ss_pred             CCCCCCcccc-cCCCCC----CCcccCCC------ccccccC-CCCCC
Q 040864          139 GALGPNLVAR-FGDATS----TGFDMIPW------TPFMLED-TIDMF  174 (203)
Q Consensus       139 ~~~~~~~~~~-f~~~~~----~~~~~~~~------~p~~~~~-~~~~~  174 (203)
                      +||.|..+.+ |...+.    ...+ .++      ++|.|.. ++.|.
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~h-h~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSV-HSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHH-TCCCTTSSSCCEEECCCCSSCC
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHh-cCCCCCCCCCCeecCCCCchhh
Confidence            9998888554 554442    2222 233      4577776 55443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=109.46  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHh--hcCCCCCccccccccccccccCCcCCCCC--CCCCCCcc
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNA--HKRERGAARRFQNHRMMMSSIGFLFNSVP--LRSLGVQP  130 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~--H~gekp~~c~~~C~~~~~~~~g~~C~k~F--~~~~~L~~  130 (203)
                      ++..+..|+++|++++||.|..|++.|.....|..|+++  |.+++++   +.|..         |++.|  .....|..
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~---~~C~~---------C~~~f~f~~~~~l~~   70 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH---ETDNN---------NPKRWSKPRKRSLLE   70 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC---CCCCC---------CCSCCSSCCCCCCCC
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC---ccCCC---------CCcccccccHHHHHH
Confidence            455599999999999999999999999999999999999  8888874   45888         99999  89999999


Q ss_pred             cccccCCCCCCCCCcccc-cCCC
Q 040864          131 HSLVDRSSGALGPNLVAR-FGDA  152 (203)
Q Consensus       131 H~r~H~~~~~~~~~~~~~-f~~~  152 (203)
                      |+++|++++||.|..+.+ |...
T Consensus        71 H~~~H~~~~~~~C~~C~k~f~~~   93 (115)
T 2dmi_A           71 MEGKEDAQKVLKCMYCGHSFESL   93 (115)
T ss_dssp             CCCSCCCCSSCBCSSSCCBCSSH
T ss_pred             HhhccCCCcceECCCCCCccCCH
Confidence            999999988888777444 4433

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=3.5e-16  Score=105.90  Aligned_cols=72  Identities=18%  Similarity=0.328  Sum_probs=66.0

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      ..++...+.++++|.|.+|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|+++
T Consensus         6 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A            6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP----YKCDE---------CGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS----EECSS---------SCCEESSHHHHHHHGGGSCCC
T ss_pred             CCCCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC----eeCCC---------CCCccCCHHHHHHHHHHhCCC
Confidence            34455677889999999999999999999999999999999    88888         999999999999999999999


Q ss_pred             CCCCC
Q 040864          139 GALGP  143 (203)
Q Consensus       139 ~~~~~  143 (203)
                      +||.|
T Consensus        73 ~p~~C   77 (77)
T 2cot_A           73 GPSSG   77 (77)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            98865

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7.3e-17  Score=114.75  Aligned_cols=75  Identities=11%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCC-CchhHHHHHHhhcC-CCCCccccccccccccccCCcCCCCCCCCCCCcccc
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFY-SSQALGGHQNAHKR-ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS  132 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~-~~~~L~~H~r~H~g-ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~  132 (203)
                      .+..+..|+++|+++++|.|.+|++.|. ....|..|+++|++ ++|    |.|..         |++.|.+...|+.|+
T Consensus         8 ~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~----~~C~~---------C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A            8 PGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA----LKCQH---------CRKQFKSKAGLNYHT   74 (98)
T ss_dssp             CCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH----HSCSS---------SCCCCSCHHHHHHHH
T ss_pred             CCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC----EECCC---------CCCccCCHHHHHHHH
Confidence            3444789999999999999999999999 99999999999999 999    88988         999999999999999


Q ss_pred             cccCCCCCCC
Q 040864          133 LVDRSSGALG  142 (203)
Q Consensus       133 r~H~~~~~~~  142 (203)
                      ++|++++|+.
T Consensus        75 ~~h~~~kp~~   84 (98)
T 2gqj_A           75 MAEHSAKPSD   84 (98)
T ss_dssp             HHHSCSCSSC
T ss_pred             HHHcCCCCCC
Confidence            9999999644

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=6.8e-16  Score=105.84  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCC----CCCccccccccccccccCCcCCCCCCCCCCCccccc
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE----RGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL  133 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge----kp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r  133 (203)
                      ++.+|+++|++++||.|.+|++.|.....|..|+++|..+    ++    |.|..         |++.|.....|..|++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~----~~C~~---------C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA----FVCSK---------CGKTFTRRNTMARHAD   68 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC----EECSS---------SCCEESCHHHHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc----eECCC---------CCChhCCHHHHHHHHH
Confidence            4788999999999999999999999999999999887765    67    88989         9999999999999999


Q ss_pred             ccCCCCCCCCCccc
Q 040864          134 VDRSSGALGPNLVA  147 (203)
Q Consensus       134 ~H~~~~~~~~~~~~  147 (203)
                      +|++++++.+..+.
T Consensus        69 ~h~~~~~~~~~~~~   82 (86)
T 1x6h_A           69 NCAGPDGVEGENSG   82 (86)
T ss_dssp             HCCCCCSCCCCCCC
T ss_pred             HccCCCCcccCCCC
Confidence            99999988876643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.54  E-value=8.8e-16  Score=103.09  Aligned_cols=64  Identities=16%  Similarity=0.338  Sum_probs=60.5

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGAL  141 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~  141 (203)
                      .++++++|.|..|++.|.....|..|+++|++++|    |.|..         |++.|.+...|..|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP----YRCNI---------CGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS----EECTT---------TCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC----EECCC---------CCchhCCHHHHHHHHHhcCCCCCC
Confidence            45788999999999999999999999999999999    88988         999999999999999999999975

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.53  E-value=3.8e-16  Score=117.67  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=69.4

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccc
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV  134 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~  134 (203)
                      ....+..|+++|++++||.|.+|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++
T Consensus        34 ~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           34 CLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR----YQCLA---------CGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             CHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC----EEESS---------SCCEESSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc----ccCCC---------CCCCcCCHHHHHHHhHH
Confidence            334499999999999999999999999999999999999999999    88988         99999999999999999


Q ss_pred             cCCCCCCC
Q 040864          135 DRSSGALG  142 (203)
Q Consensus       135 H~~~~~~~  142 (203)
                      |++++|+.
T Consensus       101 hh~~~p~~  108 (133)
T 2lt7_A          101 VHSQDPSG  108 (133)
T ss_dssp             HTCCCTTS
T ss_pred             hcCCCCCC
Confidence            99887644

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.2e-15  Score=101.95  Aligned_cols=66  Identities=24%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .+.++|+++++|.|.+|++.|.....|..|+++|++++|    |.|..         |++.|.+...|..|+++|+++.
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP----YKCLE---------CGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC----EECSS---------SCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC----eECCC---------CCcccCCHHHHHHHHHhcCCCC
Confidence            457889999999999999999999999999999999999    88888         9999999999999999998775

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=3.8e-15  Score=100.68  Aligned_cols=68  Identities=22%  Similarity=0.341  Sum_probs=61.8

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHH-hhcCC-CCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQN-AHKRE-RGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H~ge-kp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      ++.+|+++|++++||.|.+|++.|.....|..|++ .|.++ ++    |.|..         |++.|.+...|..|+++|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~~   68 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK----FHCPH---------CDTVIARKSDLGVHLRKQ   68 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSS----EECSS---------SSCEESSHHHHHHHHHHT
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCc----cCCCC---------CCCccCCHHHHHHHHHHh
Confidence            37789999999999999999999999999999997 78875 88    88988         999999999999999986


Q ss_pred             CCC
Q 040864          136 RSS  138 (203)
Q Consensus       136 ~~~  138 (203)
                      ++.
T Consensus        69 H~~   71 (77)
T 2ct1_A           69 HSY   71 (77)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            553

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.50  E-value=1.8e-15  Score=107.88  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=39.0

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcc
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLV  146 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~  146 (203)
                      ..+++|.|..|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+++++|.|..+
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   79 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP----YTCDI---------CHKAFRRQDHLRDHRYIHSKEKPFKCQEC   79 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC----CBCSS---------SCCBCSCHHHHHHHGGGSCCCCTTSCSSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC----cCCCC---------ccchhCCHHHHHHHHHHhCCCCCeECCCc
Confidence            344555566666666555556566555555555    55555         55555555555556555555555555553


Q ss_pred             c
Q 040864          147 A  147 (203)
Q Consensus       147 ~  147 (203)
                      .
T Consensus        80 ~   80 (106)
T 2ee8_A           80 G   80 (106)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.8e-15  Score=99.53  Aligned_cols=65  Identities=17%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      .|+++++|.|..|++.|.....|..|+++|++++|    |.|..         |++.|.+...|..|+++|++++|..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP----FKCNY---------CSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS----EECSS---------SSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC----EeCCC---------CCCccCCHHHHHHHHHHHhCCCCCC
Confidence            46889999999999999999999999999999999    88988         9999999999999999999998643

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.48  E-value=1.9e-16  Score=124.52  Aligned_cols=127  Identities=12%  Similarity=0.130  Sum_probs=82.2

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccccc----------cccc------CCcC
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMM----------MSSI------GFLF  118 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~----------~~~~------g~~C  118 (203)
                      ....+..|++.|.++++|.|..|++.|.....|..|+++|.++++|.|.. |....          ..|.      ...|
T Consensus        33 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  111 (190)
T 2i13_A           33 RSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE-CGKSFSQRANLRAHQRTHTGEKPYACPEC  111 (190)
T ss_dssp             SSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTT-TCCEESCHHHHHHHHHHHHTCCCEECTTT
T ss_pred             CHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcc-cCCccCCHHHHHHHHHhcCCCCCCcCCCC
Confidence            33347778888888888888888888888888888888888887754432 21100          0111      1237


Q ss_pred             CCCCCCCCCCcccccccCCCCCCCCCcccc-cCCCC----CCCcccCCCccccccC-CCCCCCCCCcccCC
Q 040864          119 NSVPLRSLGVQPHSLVDRSSGALGPNLVAR-FGDAT----STGFDMIPWTPFMLED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       119 ~k~F~~~~~L~~H~r~H~~~~~~~~~~~~~-f~~~~----~~~~~~~~~~p~~~~~-~~~~~~~~s~~~~~  183 (203)
                      ++.|.....|..|+++|++++||.|..+.+ |....    +.+++ ++.+||.|.. ++.|.....|..|.
T Consensus       112 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H-~~~~~~~C~~C~~~f~~~~~L~~H~  181 (190)
T 2i13_A          112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH-TGEKPYKCPECGKSFSRRDALNVHQ  181 (190)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH-HCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc-CCCCCeECCCCCCccCCHHHHHHHH
Confidence            777877777888888888877777776444 44333    23444 4778888888 78888877777765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.48  E-value=8.4e-15  Score=102.47  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      .+..|+++|.++++|.|..|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|++
T Consensus        23 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP----FKCQI---------CPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             HHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC----EECSS---------SSCEESSHHHHHHHHTTCCS
T ss_pred             HHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC----ccCCC---------CCCccCCHHHHHHHHHHhcC
Confidence            488999999999999999999999999999999999999999    88888         99999999999999999998


Q ss_pred             CCCC
Q 040864          138 SGAL  141 (203)
Q Consensus       138 ~~~~  141 (203)
                      +++.
T Consensus        90 ~~~p   93 (96)
T 2dmd_A           90 DSGP   93 (96)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8744

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=7.2e-15  Score=106.02  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=63.9

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHH-hh---cCCCCCccccccccccccccCCcCCCCCCCCCCCccc-ccccCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQN-AH---KRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH-SLVDRSSG  139 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H---~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H-~r~H~~~~  139 (203)
                      ..+|++||.|..|++.|.....|..|++ +|   ++++|    |.|..         |++.|..+..|..| +++|++++
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp----f~C~~---------Cgk~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS----YVCVE---------CNFLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC----EEETT---------TTEEESSTHHHHTHHHHTSTTCC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC----cCCCC---------CCcccCCHHHHHHHHHHhcCCCC
Confidence            3478999999999999999999999998 59   67899    88989         99999999999999 89999999


Q ss_pred             CCCCCcccc
Q 040864          140 ALGPNLVAR  148 (203)
Q Consensus       140 ~~~~~~~~~  148 (203)
                      ||.|..+..
T Consensus        79 py~C~~~~~   87 (102)
T 2ghf_A           79 NFKLTMVKR   87 (102)
T ss_dssp             CEEEEECCC
T ss_pred             CeeCCcccC
Confidence            988876443

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.46  E-value=8.5e-16  Score=120.75  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccccc----------cccc------CCcCCCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMM----------MSSI------GFLFNSV  121 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~----------~~~~------g~~C~k~  121 (203)
                      .+..|+++|.++++|.|..|++.|.....|..|+++|.++++|.|.. |....          ..|.      ...|++.
T Consensus         8 ~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~-C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   86 (190)
T 2i13_A            8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE-CGKSFSDKKDLTRHQRTHTGEKPYKCPECGKS   86 (190)
T ss_dssp             -----------------------CCSSHHHHHGGGCC---CCEECTT-TCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             cchhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCC-cCchhCCHHHHHHHHHhcCCCCCccCcccCCc
Confidence            47889999999999999999999999999999999999999954432 11100          0111      1235555


Q ss_pred             CCCCCCCcccccccCCCCCCCCCcccc-cCCCC----CCCcccCCCccccccC-CCCCCCCCCcccC
Q 040864          122 PLRSLGVQPHSLVDRSSGALGPNLVAR-FGDAT----STGFDMIPWTPFMLED-TIDMFWPGSCHVD  182 (203)
Q Consensus       122 F~~~~~L~~H~r~H~~~~~~~~~~~~~-f~~~~----~~~~~~~~~~p~~~~~-~~~~~~~~s~~~~  182 (203)
                      |.....|..|+++|.++++|.|..+.+ |....    +..++ ++.+||.|.. ++.|.....|..|
T Consensus        87 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~L~~H  152 (190)
T 2i13_A           87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH-TGEKPYKCPECGKSFSREDNLHTH  152 (190)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHH-HCCCCEECTTTCCEESCHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHh-CCCCCeECCCCCcccCCHHHHHHH
Confidence            555555555555555555555555333 32222    12233 3566666666 6666666555554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=4.5e-15  Score=105.60  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccC-CCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccc-c
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKF-YSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH-S  132 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F-~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H-~  132 (203)
                      ....+..|++.|+++++|.|..|++.| .....|..|+++| +++|    |.|..         |++.|.++..|+.| +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~----~~C~~---------Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           18 AGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM----FTCHH---------CGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             TTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC----CCCSS---------SCCCCSSHHHHHHHHH
T ss_pred             CchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC----eECCC---------CCCeeCCHHHHHHHhH
Confidence            444478899999999999999999999 9999999999999 9999    88888         99999999999999 9


Q ss_pred             cccCCCC
Q 040864          133 LVDRSSG  139 (203)
Q Consensus       133 r~H~~~~  139 (203)
                      ++|++..
T Consensus        84 ~~H~~~p   90 (96)
T 2ctd_A           84 ANHNSLP   90 (96)
T ss_dssp             HHTCCCS
T ss_pred             HhcCCCC
Confidence            9998654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.45  E-value=4.1e-14  Score=100.77  Aligned_cols=74  Identities=14%  Similarity=0.295  Sum_probs=69.7

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      .+..|+++|+++++|.|.+|++.|.....|..|+++|.++++    |.|..         |++.|.+...|..|+++|++
T Consensus        32 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP----FKCQE---------CGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             HHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT----TSCSS---------SCCCCSSHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC----eECCC---------cCCcccCHHHHHHHHHHhCC
Confidence            488999999999999999999999999999999999999999    88888         99999999999999999999


Q ss_pred             CCCCCCC
Q 040864          138 SGALGPN  144 (203)
Q Consensus       138 ~~~~~~~  144 (203)
                      ++||...
T Consensus        99 ~~~~~~~  105 (106)
T 2ee8_A           99 TSSPTAA  105 (106)
T ss_dssp             CCCCCCC
T ss_pred             CCCCcCC
Confidence            9987643

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.44  E-value=4.4e-15  Score=102.60  Aligned_cols=70  Identities=27%  Similarity=0.387  Sum_probs=63.0

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      ..+..|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|+
T Consensus        20 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACDI---------CGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             HHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC----EECTT---------TCCEESSHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC----ccCCC---------CCchhCCHHHHHHHHHHhc
Confidence            3488899999999999999999999999999999999999999    88888         9999999999999999999


Q ss_pred             CCC
Q 040864          137 SSG  139 (203)
Q Consensus       137 ~~~  139 (203)
                      +++
T Consensus        87 ~~k   89 (90)
T 1a1h_A           87 RQK   89 (90)
T ss_dssp             C--
T ss_pred             ccC
Confidence            876

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-14  Score=99.85  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc-cccCCCC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRSSG  139 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~~~  139 (203)
                      ..+..+...++|.|.+|++.|.....|..|+++|++++|    |.|..         |++.|.++..|.+|+ ++|+++.
T Consensus        18 ~~~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           18 GVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV----FPCKY---------CPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS----EECTT---------SSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc----cCCCC---------CCCEeCCHHHHHHhCcccCcCCC
Confidence            345677889999999999999999999999999999999    88888         999999999999996 7898765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-14  Score=109.70  Aligned_cols=99  Identities=13%  Similarity=0.037  Sum_probs=73.4

Q ss_pred             chhcccCC-CCCCcc--------eecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCC
Q 040864           58 STDRRSKP-ASGNKV--------FSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGV  128 (203)
Q Consensus        58 ~~~~H~r~-Htgekp--------~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L  128 (203)
                      .+..|++. |.+.++        |.|..|++.|.....|..|+++|+++++    |.|..     .  .|++.|.....|
T Consensus        40 ~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~-----~--~C~~~f~~~~~L  108 (155)
T 2rpc_A           40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP----FPCPF-----P--GCGKIFARSENL  108 (155)
T ss_dssp             HHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS----EECSC-----T--TTCCEESCHHHH
T ss_pred             HHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc----ccCCc-----C--CCCCccCCHHHH
Confidence            37788876 766654        7888888888888888888888888888    55532     0  188888888888


Q ss_pred             cccccccCCCCCCCCC---cccccCCCC----CCCcccCCCcccccc
Q 040864          129 QPHSLVDRSSGALGPN---LVARFGDAT----STGFDMIPWTPFMLE  168 (203)
Q Consensus       129 ~~H~r~H~~~~~~~~~---~~~~f~~~~----~~~~~~~~~~p~~~~  168 (203)
                      ..|+++|++++||.|.   ....|....    +.+++ ++++||.|.
T Consensus       109 ~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H-~~~k~~~c~  154 (155)
T 2rpc_A          109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH-TSDKSGPSS  154 (155)
T ss_dssp             HHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTT-TSCCCSCSC
T ss_pred             HHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHh-cCCCCCCCC
Confidence            8888888888888887   455565443    35566 588888775

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.1e-14  Score=94.37  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      .+..|+++|+++++|.|..|++.|.....|..       +++    |.|..         |++.|.+...|..|+++|++
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~----~~C~~---------C~~~f~~~~~l~~H~~~H~~   64 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKT----PMCEK---------CRKDSCQEAALNKDEGNESG   64 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSS----CCCHH---------HHHTCSCCCSSCCCSSCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCC----CCCCC---------CChhhcCHHHHHHHHHhhcC
Confidence            48899999999999999999999999998876       678    88888         99999999999999999999


Q ss_pred             CCCCCCCc
Q 040864          138 SGALGPNL  145 (203)
Q Consensus       138 ~~~~~~~~  145 (203)
                      ++||.|..
T Consensus        65 ~~~~~C~~   72 (73)
T 2ctu_A           65 KKTSGPSS   72 (73)
T ss_dssp             CCCSSCCC
T ss_pred             CCCCCCCC
Confidence            99988764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.43  E-value=2.2e-15  Score=109.27  Aligned_cols=72  Identities=24%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             hhcccCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           59 TDRRSKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      +..|+++|.++++|.|.  .|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+
T Consensus        24 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~   90 (119)
T 2jp9_A           24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP----FQCKT---------CQRKFSRSDHLKTHTRTHT   90 (119)
T ss_dssp             HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC----EECTT---------TCCEESCHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC----ccCCc---------cCchhCCHHHHHHHHHHhc
Confidence            44444444445555554  355555555555555555555444    44444         5555555555555555554


Q ss_pred             CCCCCCC
Q 040864          137 SSGALGP  143 (203)
Q Consensus       137 ~~~~~~~  143 (203)
                      +++||.|
T Consensus        91 ~~~~~~C   97 (119)
T 2jp9_A           91 GEKPFSC   97 (119)
T ss_dssp             TCCCEEC
T ss_pred             CCCCeeC
Confidence            4444444

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-14  Score=108.93  Aligned_cols=74  Identities=23%  Similarity=0.307  Sum_probs=68.9

Q ss_pred             chhcccCCCCCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCccccc
Q 040864           58 STDRRSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSL  133 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r  133 (203)
                      .+..|+++|+++++|.|..  |++.|.....|..|+++|++++|    |.|.  .         |++.|.+...|..|++
T Consensus        77 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~----~~C~~~~---------C~k~f~~~~~L~~H~~  143 (155)
T 2rpc_A           77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP----FKCEFEG---------CDRRFANSSDRKKHMH  143 (155)
T ss_dssp             HHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS----BCCSSTT---------CCCCBSSHHHHHHSST
T ss_pred             HHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC----ccCCCCC---------CCCccCCHHHHHHHHH
Confidence            3889999999999999998  99999999999999999999999    6665  5         9999999999999999


Q ss_pred             ccCCCCCCCCC
Q 040864          134 VDRSSGALGPN  144 (203)
Q Consensus       134 ~H~~~~~~~~~  144 (203)
                      +|++++||.+.
T Consensus       144 ~H~~~k~~~c~  154 (155)
T 2rpc_A          144 VHTSDKSGPSS  154 (155)
T ss_dssp             TTTSCCCSCSC
T ss_pred             HhcCCCCCCCC
Confidence            99999998774

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.1e-14  Score=96.28  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcC---CCCCccccccccccccccCCcCCCCCCCCCCCcccc-cccCCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKR---ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRSSGA  140 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~g---ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~~~~  140 (203)
                      .|++++||.|.+|++.|.....|..|+++|++   +++    |.|..         |++.|.....|..|+ ++|.+.++
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR----FPCEF---------CGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC----EECTT---------TCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc----cCCCC---------CCchhCCHHHHHHHHHHhCCCCCC
Confidence            47899999999999999999999999999996   889    88988         999999999999999 67777775


Q ss_pred             CCC
Q 040864          141 LGP  143 (203)
Q Consensus       141 ~~~  143 (203)
                      ...
T Consensus        68 ~~~   70 (78)
T 2d9h_A           68 APQ   70 (78)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.42  E-value=1.6e-14  Score=103.55  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      +...++++|+++++|.|.+|++.|.....|..|+++|.  ++    |.|..         |++.|.....|..|++ |++
T Consensus         3 s~ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~----~~C~~---------C~~~f~~~~~l~~H~~-H~~   66 (107)
T 1wjp_A            3 SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NA----AVCPY---------CSLRFFSPELKQEHES-KCE   66 (107)
T ss_dssp             CCCCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HS----BCCTT---------TCCCBSSHHHHHHHHH-HCS
T ss_pred             CccccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CC----ccCCC---------CCCccCCHHHHHHHHH-cCC
Confidence            34567888999999999999999999999999999984  67    88888         9999999999999995 999


Q ss_pred             CCCCCCCcccc-cCCCC----CCC-cccCCCcccccc
Q 040864          138 SGALGPNLVAR-FGDAT----STG-FDMIPWTPFMLE  168 (203)
Q Consensus       138 ~~~~~~~~~~~-f~~~~----~~~-~~~~~~~p~~~~  168 (203)
                      ++||.|..+.+ |....    +.+ ++ ++.+||.+.
T Consensus        67 ~~~~~C~~C~~~f~~~~~L~~H~~~~H-~~~~~~~~~  102 (107)
T 1wjp_A           67 YKKLTCLECMRTFKSSFSIWRHQVEVH-NQNNMAPTS  102 (107)
T ss_dssp             TGGGEEGGGTEECSSHHHHHHHHHHTS-CCCCCCCCC
T ss_pred             CCCccCccccchhCCHHHHHHHHHHHc-CCCCCCCCC
Confidence            99998887554 54443    233 45 577787765

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.4e-14  Score=105.47  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccc---cCCCCCCCC
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV---DRSSGALGP  143 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~---H~~~~~~~~  143 (203)
                      +++++|.|..|++.|.....|..|+++|.+++|    |.|..         |++.|.....|..|++.   |.++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~~~~~~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP----FECPK---------CGKCYFRKENLLEHEARNCMNRSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS----CBCTT---------TCCBCSSHHHHHHHHHHCCCCSCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC----eECCC---------CCchhcCHHHHHHHHhhhhcCCCCCCeEC
Confidence            567788888888888888888888888888888    77777         88888888888888774   567777877


Q ss_pred             Ccccc-cCCCC----CCCcccCCCccccccC-CCCCCCCCCcccCC
Q 040864          144 NLVAR-FGDAT----STGFDMIPWTPFMLED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       144 ~~~~~-f~~~~----~~~~~~~~~~p~~~~~-~~~~~~~~s~~~~~  183 (203)
                      ..+.+ |....    +.+++ ++.+||.|.. ++.|.....|..|.
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~C~~~f~~~~~l~~H~  114 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSH-TGEMPYKCSSCSQQFMQKKDLQSHM  114 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHH-SSSCSEECSSSCCEESSHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHc-CCCCCccCCCccchhCCHHHHHHHH
Confidence            77554 44333    23444 4788888888 88888888887764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.5e-14  Score=94.62  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             cCCCCCCcceecCCCCccCCCchhHHHHHHh-h-cCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           63 SKPASGNKVFSCNFCMRKFYSSQALGGHQNA-H-KRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        63 ~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~-H-~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      +++|++++||.|..|++.|.....|..|+++ | ++++|    |.|..         |++.|.+...|..|+++|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV----YPCPF---------CFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC----EECTT---------TCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC----eECCC---------CCCccCCHHHHHHHHHHHcC
Confidence            4678999999999999999999999999998 7 68999    88888         99999999999999998875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.40  E-value=9.3e-14  Score=101.52  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=55.5

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      +..|+++| ++++|.|..|++.|.....|..|+++|.++++    |.|.  .         |++.|.....|..|+++|+
T Consensus        23 l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~~h~   88 (124)
T 1ubd_C           23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP----FQCTFEG---------CGKRFSLDFNLRTHVRIHT   88 (124)
T ss_dssp             HHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC----EECCSTT---------CCCEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC----eeCCCCC---------CcCccCCHHHHHHHHHHhC
Confidence            66777777 66777777777777777777777777777777    4553  4         7777777777777777777


Q ss_pred             CCCCCCCC---cccccCCCC
Q 040864          137 SSGALGPN---LVARFGDAT  153 (203)
Q Consensus       137 ~~~~~~~~---~~~~f~~~~  153 (203)
                      ++++|.|.   ....|....
T Consensus        89 ~~~~~~C~~~~C~~~f~~~~  108 (124)
T 1ubd_C           89 GDRPYVCPFDGCNKKFAQST  108 (124)
T ss_dssp             CCCCCCCCSTTCCCCCSSTT
T ss_pred             CCCceECCCCCCCCccCCHH
Confidence            77777774   344455444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.9e-14  Score=109.02  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             CchhcccC---CCCCCcceecCCC-----CccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCC
Q 040864           57 DSTDRRSK---PASGNKVFSCNFC-----MRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSL  126 (203)
Q Consensus        57 ~~~~~H~r---~Htgekp~~C~~C-----gk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~  126 (203)
                      ..+..|++   +|.++++|.|..|     ++.|.....|..|+++|.+++|    |.|.  .         |++.|....
T Consensus        17 ~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~   83 (155)
T 2gli_A           17 EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP----HKCTFEG---------CRKSYSRLE   83 (155)
T ss_dssp             HHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC----CCCCSTT---------CCCCCSSHH
T ss_pred             HHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC----ccCCCCC---------CCCcccCHH
Confidence            34888987   7899999998753     4999999999999999999999    6664  5         999999999


Q ss_pred             CCcccccccCCCCCCCCC---cccccCCCCC----C-CcccCCCccccccC---CCCCCCCCCcccCC
Q 040864          127 GVQPHSLVDRSSGALGPN---LVARFGDATS----T-GFDMIPWTPFMLED---TIDMFWPGSCHVDN  183 (203)
Q Consensus       127 ~L~~H~r~H~~~~~~~~~---~~~~f~~~~~----~-~~~~~~~~p~~~~~---~~~~~~~~s~~~~~  183 (203)
                      .|..|+++|++++||.|.   ....|.....    . +++ ++.+||.|..   ++.|.....|..|.
T Consensus        84 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H-~~~~~~~C~~~~C~~~f~~~~~L~~H~  150 (155)
T 2gli_A           84 NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH-SNEKPYVCKLPGCTKRYTDPSSLRKHV  150 (155)
T ss_dssp             HHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTT-CSCCCEECCSTTTCCEESSHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhc-CCCCCeeCCCCCCccccCCHHHHHHHH
Confidence            999999999999999988   4556765553    2 455 5889999964   78888877777653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.39  E-value=9.9e-15  Score=98.95  Aligned_cols=67  Identities=15%  Similarity=0.253  Sum_probs=63.2

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      .+..|+++|.++++|.|..|++.|.....|..|+++|.++++    |.|..         |++.|.+...|..|+++|+|
T Consensus        16 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP----HKCQV---------CGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC----EECTT---------TSCEESSHHHHHHHHHHHC-
T ss_pred             hHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC----CcCCC---------cchhhCChHHHHHHHHhhCC
Confidence            388999999999999999999999999999999999999999    88888         99999999999999999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.39  E-value=9.4e-15  Score=114.75  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             chhcccCCCCCCcceec--CCCCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccc-
Q 040864           58 STDRRSKPASGNKVFSC--NFCMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHS-  132 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~-  132 (203)
                      .+..|+++|+++++|.|  ..|++.|.....|..|+++|.++++    |.|.  .         |++.|.....|..|+ 
T Consensus        29 ~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~   95 (190)
T 1tf6_A           29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN----FTCDSDG---------CDLRFTTKANMKKHFN   95 (190)
T ss_dssp             HHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCC----EECCSSS---------CCCEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCc----eeCCCCC---------CCCccCCHHHHHHHHH
Confidence            37888888888888888  7888888888888888888888888    5565  5         667777666677776 


Q ss_pred             ccc-CCCCCCCC--Cccc-ccCCCC----CCCcccCCCcccccc--C-CCCCCCCCCcccCC
Q 040864          133 LVD-RSSGALGP--NLVA-RFGDAT----STGFDMIPWTPFMLE--D-TIDMFWPGSCHVDN  183 (203)
Q Consensus       133 r~H-~~~~~~~~--~~~~-~f~~~~----~~~~~~~~~~p~~~~--~-~~~~~~~~s~~~~~  183 (203)
                      ++| .+.++|.|  ..+. .|....    +.+++ ++.+||.|.  . ++.|.+...|..|.
T Consensus        96 ~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H-~~~~~~~C~~~~C~k~F~~~~~L~~H~  156 (190)
T 1tf6_A           96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHE  156 (190)
T ss_dssp             TTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGG-SSSCSSBCCSSSCCCBCSSHHHHHHHH
T ss_pred             HhcCCCcceeeCCCCCCccccCCHHHHHHHHHHh-CCCCCccCCCCCCCchhcCHHHHHHHH
Confidence            555 35556666  4433 343332    23344 466667764  2 56666666666554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.39  E-value=2.7e-14  Score=90.64  Aligned_cols=57  Identities=18%  Similarity=0.285  Sum_probs=50.3

Q ss_pred             CCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |+++|.|..|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP----YKCEF---------CEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC----EECSS---------SSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC----cCCCC---------CcchhCCHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999    88888         99999999999999998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.38  E-value=2.5e-14  Score=104.60  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=85.1

Q ss_pred             CcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC--
Q 040864           69 NKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN--  144 (203)
Q Consensus        69 ekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~--  144 (203)
                      +++|.|.  .|++.|.....|..|+++| ++++    |.|..         |++.|.....|..|+++|+++++|.|.  
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~~~   68 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRV----HVCAE---------CGKAFVESSKLKRHQLVHTGEKPFQCTFE   68 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCC----EECTT---------TCCEESSHHHHHHHGGGTSCCCCEECCST
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCC----eECCC---------CCchhCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            5789999  8999999999999999999 8888    88988         999999999999999999999999997  


Q ss_pred             -cccccCCCC----CCCcccCCCcccccc--C-CCCCCCCCCcccCC
Q 040864          145 -LVARFGDAT----STGFDMIPWTPFMLE--D-TIDMFWPGSCHVDN  183 (203)
Q Consensus       145 -~~~~f~~~~----~~~~~~~~~~p~~~~--~-~~~~~~~~s~~~~~  183 (203)
                       ....|....    +.+++ ++.+||.|.  . ++.|.....|..|.
T Consensus        69 ~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~L~~H~  114 (124)
T 1ubd_C           69 GCGKRFSLDFNLRTHVRIH-TGDRPYVCPFDGCNKKFAQSTNLKSHI  114 (124)
T ss_dssp             TCCCEESCHHHHHHHHHHH-HCCCCCCCCSTTCCCCCSSTTTTHHHH
T ss_pred             CCcCccCCHHHHHHHHHHh-CCCCceECCCCCCCCccCCHHHHHHHH
Confidence             455566544    24455 489999994  5 89999999998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.2e-13  Score=99.05  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=61.9

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      ..|+++++|.| .|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+++++|.|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP----YGCGV---------CGKKFKMKHHLVGHMKIHTGIKPYEC   68 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS----EECTT---------TSCEESSSHHHHHHHTTTCCCCCEEC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC----ccCCC---------CCcccCCHHHHHHHHHHcCCCCCeeC
Confidence            35788999999 899999999999999999999999    88888         99999999999999999988887777


Q ss_pred             Ccccc
Q 040864          144 NLVAR  148 (203)
Q Consensus       144 ~~~~~  148 (203)
                      ..+.+
T Consensus        69 ~~C~~   73 (110)
T 2csh_A           69 NICAK   73 (110)
T ss_dssp             SSSCC
T ss_pred             CCCcc
Confidence            76444

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.36  E-value=7.4e-14  Score=98.17  Aligned_cols=70  Identities=21%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             cCCchhcccCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc
Q 040864           55 AGDSTDRRSKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS  132 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~  132 (203)
                      ....+..|+++|+++++|.|.  .|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+
T Consensus        29 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~   95 (100)
T 2ebt_A           29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP----FQCGV---------CNRSFSRSDHLALHM   95 (100)
T ss_dssp             CHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS----CBCSS---------SCCBCSSHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC----eECCC---------CcCccCCHHHHHHHH
Confidence            334489999999999999996  699999999999999999999999    88888         999999999999999


Q ss_pred             cccCC
Q 040864          133 LVDRS  137 (203)
Q Consensus       133 r~H~~  137 (203)
                      ++|++
T Consensus        96 ~~H~~  100 (100)
T 2ebt_A           96 KRHQN  100 (100)
T ss_dssp             HHHCC
T ss_pred             HHhCC
Confidence            99974

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.35  E-value=2.4e-14  Score=103.65  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=87.8

Q ss_pred             CCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           67 SGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        67 tgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      +++++|.|.+  |++.|.....|..|+++|.++++    |.|.  .         |++.|.....|..|+++|+++++|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~~h~~~~~~~   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP----YQCDFKD---------CERRFSRSDQLKRHQRRHTGVKPFQ   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCC----EECCSTT---------CCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCC----ccCCCCC---------CcCccCCHHHHHHHHHHcCCCCCcc
Confidence            5789999997  99999999999999999999999    7776  7         9999999999999999999999999


Q ss_pred             CCcccc-cCCCC----CCCcccCCCccccc--cC-CCCCCCCCCcccCC
Q 040864          143 PNLVAR-FGDAT----STGFDMIPWTPFML--ED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       143 ~~~~~~-f~~~~----~~~~~~~~~~p~~~--~~-~~~~~~~~s~~~~~  183 (203)
                      |..+.+ |....    +..++ ++.+||.|  .. ++.|.....|..|.
T Consensus        69 C~~C~~~f~~~~~l~~H~~~h-~~~~~~~C~~~~C~~~f~~~~~L~~H~  116 (119)
T 2jp9_A           69 CKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHH  116 (119)
T ss_dssp             CTTTCCEESCHHHHHHHHHHH-HTCCCEECCSTTCCCEESSHHHHHHHH
T ss_pred             CCccCchhCCHHHHHHHHHHh-cCCCCeeCCCCCCccccCCHHHHHHHH
Confidence            988555 55443    24455 58999999  67 89998888777663

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.35  E-value=1.1e-13  Score=87.66  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      ||.|..|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP----YHCTY---------CNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC----EECSS---------SSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC----ccCCC---------CCchhcCHHHHHHHHHHhcccC
Confidence            68999999999999999999999999999    88888         9999999999999999999876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.33  E-value=1.8e-13  Score=95.36  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=52.5

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCC--CCCccccccccccccccCCcCCCCCCCCCCCccccc-c
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE--RGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-V  134 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge--kp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~  134 (203)
                      .+..|+++|+++++|.|..|++.|.....|..|+++|.++  ++    |.|..         |++.|.+...|..|++ +
T Consensus        22 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~~   88 (95)
T 2yt9_A           22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP----YICQS---------CGKGFSRPDHLNGHIKQV   88 (95)
T ss_dssp             HHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS----BCCSS---------SCCCBSSHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc----eECCC---------ccchhCCHHHHHHHHHHh
Confidence            3777777787788888888888888888888888887776  67    67777         8888888888888874 6


Q ss_pred             cCCCC
Q 040864          135 DRSSG  139 (203)
Q Consensus       135 H~~~~  139 (203)
                      |.++.
T Consensus        89 H~~~~   93 (95)
T 2yt9_A           89 HSGPS   93 (95)
T ss_dssp             SCCCS
T ss_pred             cCCCC
Confidence            76543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.32  E-value=2e-13  Score=95.41  Aligned_cols=70  Identities=11%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +.++++|.|..|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+++++|.|..
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~~   69 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP----YKCKT---------CDYAAADSSSLNKHLRIHSDERPFKCQI   69 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS----EECSS---------SCCEESSHHHHHHHHHHSCCCCCEECSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC----EeCCC---------CCCccCCHHHHHHHHHHhCCCCCccCCC
Confidence            4678999999999999999999999999999999    88888         9999999999999999999888777777


Q ss_pred             ccc
Q 040864          146 VAR  148 (203)
Q Consensus       146 ~~~  148 (203)
                      +.+
T Consensus        70 C~~   72 (96)
T 2dmd_A           70 CPY   72 (96)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.31  E-value=9.9e-14  Score=100.96  Aligned_cols=82  Identities=15%  Similarity=0.255  Sum_probs=73.2

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHh---hcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccc
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNA---HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV  134 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~---H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~  134 (203)
                      .+..|+++|.++++|.|..|++.|.....|..|++.   |.++++    |.|..         |++.|.....|..|+++
T Consensus        22 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~   88 (124)
T 2dlq_A           22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV----FTCSV---------CQETFRRRMELRLHMVS   88 (124)
T ss_dssp             HHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC----EECSS---------SCCEESSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC----eECCC---------CCCccCCHHHHHHHHHH
Confidence            488999999999999999999999999999999985   578888    88888         99999999999999999


Q ss_pred             cCCCCCCCCCcccc-cCCC
Q 040864          135 DRSSGALGPNLVAR-FGDA  152 (203)
Q Consensus       135 H~~~~~~~~~~~~~-f~~~  152 (203)
                      |++++||.|..+.+ |...
T Consensus        89 h~~~~~~~C~~C~~~f~~~  107 (124)
T 2dlq_A           89 HTGEMPYKCSSCSQQFMQK  107 (124)
T ss_dssp             HSSSCSEECSSSCCEESSH
T ss_pred             cCCCCCccCCCccchhCCH
Confidence            99999999988555 4443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=3.8e-13  Score=89.56  Aligned_cols=61  Identities=21%  Similarity=0.257  Sum_probs=56.7

Q ss_pred             cCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           63 SKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        63 ~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      ..+|+++++|.|.  .|++.|.....|..|+++|.+++|    |.|..         |++.|.+...|..|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP----FQCRI---------CMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC----EECTT---------TCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC----eECCC---------CCchhCCHHHHHHHHHhcC
Confidence            3568899999997  599999999999999999999999    88888         9999999999999999985

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.30  E-value=4.5e-13  Score=93.33  Aligned_cols=67  Identities=18%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC--CCCCCC
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS--GALGPN  144 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~--~~~~~~  144 (203)
                      +++++|.|..|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+++  ++|.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP----YSCPV---------CGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS----EECSS---------SCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCC----CcCCC---------CCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            578999999999999999999999999999999    88988         999999999999999999886  555555


Q ss_pred             cc
Q 040864          145 LV  146 (203)
Q Consensus       145 ~~  146 (203)
                      .+
T Consensus        70 ~C   71 (95)
T 2yt9_A           70 SC   71 (95)
T ss_dssp             SS
T ss_pred             Cc
Confidence            53

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.30  E-value=3.5e-13  Score=92.65  Aligned_cols=66  Identities=24%  Similarity=0.307  Sum_probs=62.4

Q ss_pred             chhcccCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           58 STDRRSKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      .+..|+++|+++++|.|.  .|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|
T Consensus        22 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP----FQCQK---------CDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC----EECSS---------SSCEESSHHHHHHHGGGG
T ss_pred             HHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC----ccCCC---------CCcccCCHHHHHHHHHhh
Confidence            489999999999999997  599999999999999999999999    88888         999999999999999998


Q ss_pred             C
Q 040864          136 R  136 (203)
Q Consensus       136 ~  136 (203)
                      .
T Consensus        89 ~   89 (89)
T 2wbs_A           89 F   89 (89)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=4.7e-13  Score=90.24  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=61.0

Q ss_pred             CCCcceecCC--CCccCCCchhHHHHHH-hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           67 SGNKVFSCNF--CMRKFYSSQALGGHQN-AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        67 tgekp~~C~~--Cgk~F~~~~~L~~H~r-~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      +++++|.|..  |++.|.....|..|++ +|+++++    |.|..     .+  |++.|.....|..|+++|++++||.|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~----~~C~~-----~~--C~k~f~~~~~L~~H~~~H~~~~~~~C   71 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS----FSCPE-----PA--CGKSFNFKKHLKEHMKLHSDTRDYIC   71 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC----EECSC-----TT--TCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC----eECCC-----CC--CcCccCCHHHHHHHHHHhCCCCCeeC
Confidence            5788999997  9999999999999999 7999999    56642     11  99999999999999999999999998


Q ss_pred             Ccccc
Q 040864          144 NLVAR  148 (203)
Q Consensus       144 ~~~~~  148 (203)
                      ..+.+
T Consensus        72 ~~C~k   76 (79)
T 2dlk_A           72 EFSGP   76 (79)
T ss_dssp             CSSSC
T ss_pred             CCCCC
Confidence            87544

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.30  E-value=3.7e-13  Score=86.23  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=53.0

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc-cccCCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRSSG  139 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~~~  139 (203)
                      +||.|..|++.|.....|..|+++|++++|    |.|..         |++.|.+...|..|+ ++|.++.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP----YPCGL---------CNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS----EECTT---------TCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC----ccCCC---------CCCccCCHHHHHHHHHHHcCCcC
Confidence            589999999999999999999999999999    88888         999999999999996 7888764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=78.49  Aligned_cols=42  Identities=19%  Similarity=0.444  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.28  E-value=2.4e-12  Score=78.21  Aligned_cols=42  Identities=29%  Similarity=0.511  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999999999999999999444

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.28  E-value=1.7e-13  Score=98.08  Aligned_cols=73  Identities=11%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-cc
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VD  135 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H  135 (203)
                      ..+..|+++|  .++|.|.+|++.|.....|..|++ |++++|    |.|..         |++.|.+...|+.|++ +|
T Consensus        30 ~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~----~~C~~---------C~~~f~~~~~L~~H~~~~H   93 (107)
T 1wjp_A           30 LEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK----LTCLE---------CMRTFKSSFSIWRHQVEVH   93 (107)
T ss_dssp             HHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG----GEEGG---------GTEECSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCC----ccCcc---------ccchhCCHHHHHHHHHHHc
Confidence            3488999988  589999999999999999999996 999999    88888         9999999999999997 99


Q ss_pred             CCCCCCCCCc
Q 040864          136 RSSGALGPNL  145 (203)
Q Consensus       136 ~~~~~~~~~~  145 (203)
                      .++++|.+..
T Consensus        94 ~~~~~~~~~~  103 (107)
T 1wjp_A           94 NQNNMAPTSG  103 (107)
T ss_dssp             CCCCCCCCCC
T ss_pred             CCCCCCCCCC
Confidence            9999887643

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.7e-12  Score=77.84  Aligned_cols=42  Identities=26%  Similarity=0.518  Sum_probs=39.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999544

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.1e-12  Score=78.46  Aligned_cols=42  Identities=21%  Similarity=0.438  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSS
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.3e-12  Score=78.34  Aligned_cols=42  Identities=29%  Similarity=0.516  Sum_probs=39.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=7.8e-13  Score=86.80  Aligned_cols=60  Identities=13%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccc-cccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNH-RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~-~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      ..+++||.|..|++.|. ...|..|+++ ++++|    |.|. .         |++.|..+..|..|+++|-+.+|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p----~~C~~~---------C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP----VACPNQ---------CGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE----EECTTC---------CSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC----ccCCcc---------cCcccccHHHHHHHHHhhcccCc
Confidence            46789999999999999 9999999999 99999    8888 8         99999999999999999988764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.9e-12  Score=77.89  Aligned_cols=42  Identities=26%  Similarity=0.532  Sum_probs=39.3

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=3.4e-12  Score=77.57  Aligned_cols=44  Identities=23%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC----SSCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.1e-12  Score=76.73  Aligned_cols=42  Identities=29%  Similarity=0.565  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999544

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.27  E-value=2.5e-12  Score=76.48  Aligned_cols=41  Identities=29%  Similarity=0.530  Sum_probs=38.5

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      |+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            78899999999999999999999999999999999999544

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3e-12  Score=77.73  Aligned_cols=42  Identities=24%  Similarity=0.556  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.4e-12  Score=75.77  Aligned_cols=41  Identities=32%  Similarity=0.530  Sum_probs=38.3

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      |+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            78899999999999999999999999999999999999443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=2.8e-12  Score=77.91  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.6e-12  Score=76.63  Aligned_cols=42  Identities=26%  Similarity=0.535  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            689999999999999999999999999999999999999544

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=77.87  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.9e-12  Score=77.70  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.26  E-value=9.4e-13  Score=99.60  Aligned_cols=83  Identities=17%  Similarity=0.280  Sum_probs=72.2

Q ss_pred             chhcccCCCCCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc-cc
Q 040864           58 STDRRSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LV  134 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~  134 (203)
                      .+..|+++|+++++|.|.+  |++.|.....|..|+++|++++|    |.|..     .+  |++.|.....|..|+ ++
T Consensus        54 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~-----~~--C~~~f~~~~~L~~H~~~~  122 (155)
T 2gli_A           54 MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP----YMCEH-----EG--CSKAFSNASDRAKHQNRT  122 (155)
T ss_dssp             HHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC----EECCS-----TT--CCCEESSSSTTHHHHHHT
T ss_pred             HHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCC----eeCCC-----CC--CCCccCCHHHHHHHHHHh
Confidence            4899999999999999985  99999999999999999999999    66652     11  999999999999998 89


Q ss_pred             cCCCCCCCCCc--cc-ccCC
Q 040864          135 DRSSGALGPNL--VA-RFGD  151 (203)
Q Consensus       135 H~~~~~~~~~~--~~-~f~~  151 (203)
                      |.+++||.|..  +. .|..
T Consensus       123 H~~~~~~~C~~~~C~~~f~~  142 (155)
T 2gli_A          123 HSNEKPYVCKLPGCTKRYTD  142 (155)
T ss_dssp             TCSCCCEECCSTTTCCEESS
T ss_pred             cCCCCCeeCCCCCCccccCC
Confidence            99999999875  44 4544

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.26  E-value=2.1e-13  Score=107.00  Aligned_cols=104  Identities=16%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             CCCcceec--CCCCccCCCchhHHHHHHhhcCCCCCcccccc--ccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           67 SGNKVFSC--NFCMRKFYSSQALGGHQNAHKRERGAARRFQN--HRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        67 tgekp~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C--~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      ...++|.|  ..|++.|.....|..|+++|.+++|    |.|  ..         |++.|.....|..|+++|.++++|.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~~h~~~~~~~   74 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP----FPCKEEG---------CEKGFTSLHHLTRHSLTHTGEKNFT   74 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCS----SCCSSTT---------CCCCCSSHHHHHHHHTTTTTCCCEE
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCC----ccCCCCC---------CChhhCCHHHHHHHHHHccCCCcee
Confidence            46789999  6899999999999999999999999    777  77         9999999999999999999999999


Q ss_pred             CC---cccccCCCCC----C-CcccCCCccccc--cC-CCCCCCCCCcccCC
Q 040864          143 PN---LVARFGDATS----T-GFDMIPWTPFML--ED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       143 ~~---~~~~f~~~~~----~-~~~~~~~~p~~~--~~-~~~~~~~~s~~~~~  183 (203)
                      |.   ....|.....    . ..+..+.+||.|  .. ++.|.....|..|.
T Consensus        75 C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~  126 (190)
T 1tf6_A           75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ  126 (190)
T ss_dssp             CCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHH
Confidence            97   4555665442    2 444247789999  88 99999999888775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.9e-12  Score=77.80  Aligned_cols=42  Identities=21%  Similarity=0.512  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            589999999999999999999999999999999999999444

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=77.82  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999544

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.7e-12  Score=77.32  Aligned_cols=44  Identities=20%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC----SSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.5e-12  Score=77.34  Aligned_cols=42  Identities=24%  Similarity=0.506  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.8e-12  Score=76.95  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            689999999999999999999999999999999999999544

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4e-12  Score=77.22  Aligned_cols=42  Identities=31%  Similarity=0.580  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4e-12  Score=77.05  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT----TSSSC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.6e-12  Score=77.27  Aligned_cols=42  Identities=26%  Similarity=0.503  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.4e-12  Score=76.87  Aligned_cols=44  Identities=20%  Similarity=0.429  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC----CCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.25  E-value=5.6e-12  Score=76.55  Aligned_cols=44  Identities=25%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS----CSCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.7e-12  Score=77.90  Aligned_cols=42  Identities=26%  Similarity=0.537  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.1e-12  Score=77.67  Aligned_cols=42  Identities=26%  Similarity=0.495  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.8e-12  Score=77.34  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS----SGPSS   45 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS----SCCSC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.3e-12  Score=77.02  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP----SGPSS   45 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC----SSCSC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.2e-12  Score=77.67  Aligned_cols=42  Identities=26%  Similarity=0.553  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.2e-12  Score=77.04  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC----CSCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.5e-12  Score=76.90  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC----SCSSC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.5e-12  Score=77.40  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP   43 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCS
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.25  E-value=5e-13  Score=92.10  Aligned_cols=68  Identities=21%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             CCcceecC--CCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           68 GNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        68 gekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |++||.|.  .|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|++++||.|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~~   67 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP----FQCRI---------CMRNFSRSDHLTTHIRTHTGEKPFACDI   67 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC----EECTT---------TCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCC----ccCCC---------CCcccCCHHHHHHHHHHcCCCCCccCCC
Confidence            47899998  599999999999999999999999    88888         9999999999999999999998888877


Q ss_pred             ccc
Q 040864          146 VAR  148 (203)
Q Consensus       146 ~~~  148 (203)
                      +.+
T Consensus        68 C~~   70 (90)
T 1a1h_A           68 CGR   70 (90)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            544

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.5e-12  Score=76.44  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=40.7

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.+...|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH----SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC----SCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.3e-12  Score=77.55  Aligned_cols=42  Identities=24%  Similarity=0.506  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.1e-12  Score=76.07  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=39.0

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            378999999999999999999999999999999999999543

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.5e-12  Score=76.44  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=40.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH----SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS----CCSCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5e-12  Score=76.70  Aligned_cols=44  Identities=25%  Similarity=0.411  Sum_probs=41.0

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC----SSCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    66654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.24  E-value=4.7e-12  Score=75.17  Aligned_cols=41  Identities=20%  Similarity=0.386  Sum_probs=38.5

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      |+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            78999999999999999999999999999999999999543

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.2e-12  Score=77.05  Aligned_cols=44  Identities=23%  Similarity=0.453  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP----SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC----SCSSC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.9e-12  Score=76.95  Aligned_cols=42  Identities=21%  Similarity=0.480  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            589999999999999999999999999999999999999544

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.24  E-value=4.3e-12  Score=76.99  Aligned_cols=44  Identities=25%  Similarity=0.451  Sum_probs=40.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP----SGPSS   45 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC----CSSSC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    66654

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.6e-12  Score=77.26  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=76.66  Aligned_cols=42  Identities=21%  Similarity=0.375  Sum_probs=39.2

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            489999999999999999999999999999999999999543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.7e-12  Score=76.44  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP----SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS----SCSSC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.8e-12  Score=76.54  Aligned_cols=42  Identities=21%  Similarity=0.414  Sum_probs=39.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            689999999999999999999999999999999999999544

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=3.3e-13  Score=96.74  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccc
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLV  134 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~  134 (203)
                      ....+..|++.|.++++|.|.+|++.|.....|..|+++|.++++    |.|..         |++.|.+...|..|+++
T Consensus        21 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           21 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP----YECNI---------CAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             SHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC----EECSS---------SCCEESCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC----eeCCC---------CcchhcCHHHHHHHHHH
Confidence            334489999999999999999999999999999999999999999    88888         99999999999999999


Q ss_pred             cCCC
Q 040864          135 DRSS  138 (203)
Q Consensus       135 H~~~  138 (203)
                      |+..
T Consensus        88 ~~~~   91 (110)
T 2csh_A           88 CTKS   91 (110)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            8653

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.4e-12  Score=77.37  Aligned_cols=42  Identities=24%  Similarity=0.507  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            689999999999999999999999999999999999999444

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.24  E-value=4.5e-12  Score=76.93  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC----SCSSC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC----cCCCC
Confidence            689999999999999999999999999999999999999    55544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5e-12  Score=76.72  Aligned_cols=44  Identities=20%  Similarity=0.412  Sum_probs=40.7

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP----SGPSS   45 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC----SCSCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.7e-12  Score=77.40  Aligned_cols=42  Identities=31%  Similarity=0.592  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.9e-12  Score=76.37  Aligned_cols=44  Identities=23%  Similarity=0.477  Sum_probs=40.7

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP----SGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS----SSCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.8e-12  Score=76.68  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP----SGPSS   45 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC----SCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.24  E-value=3.8e-12  Score=77.16  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP----SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC----SCCTT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    56554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=5.8e-12  Score=75.68  Aligned_cols=43  Identities=33%  Similarity=0.466  Sum_probs=39.8

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      |+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   43 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP----SGPSS   43 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS----CSCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            78999999999999999999999999999999999999    55544

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.4e-12  Score=76.95  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC----CSCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.5e-12  Score=76.53  Aligned_cols=44  Identities=23%  Similarity=0.446  Sum_probs=40.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP----SGPSS   45 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS----CCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    56554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.7e-12  Score=76.82  Aligned_cols=44  Identities=23%  Similarity=0.439  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC----CSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    56554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.8e-12  Score=76.70  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP----SGPSS   45 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS----CSSCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.5e-12  Score=76.59  Aligned_cols=42  Identities=24%  Similarity=0.554  Sum_probs=39.0

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|++++||.|.+|++.|.....|..|+++|++++||.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478999999999999999999999999999999999999444

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=4.8e-12  Score=76.89  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC----SCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.5e-12  Score=76.44  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=40.7

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC----SGPSS   45 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS----SCCSC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.4e-12  Score=76.54  Aligned_cols=44  Identities=23%  Similarity=0.401  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC----SCCSC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.1e-12  Score=76.30  Aligned_cols=44  Identities=27%  Similarity=0.484  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP----SGPSS   45 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC----SSSCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.5e-12  Score=76.61  Aligned_cols=44  Identities=25%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|.+|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC----SSCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.22  E-value=2.4e-12  Score=83.80  Aligned_cols=58  Identities=12%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS  132 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~  132 (203)
                      +..|+++|++++||.|..|++.|.....|.   ++|++++|    |.|..         |++.|.....+..+.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~----~~C~~---------C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT----FRCTF---------CHTEVEEDESAMPKK   59 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE----EBCSS---------SCCBCEECTTCSCCC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCC----EECCC---------CCCccccCccccccc
Confidence            567999999999999999999999988886   89999999    88888         999999988887664

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.1e-12  Score=76.30  Aligned_cols=44  Identities=23%  Similarity=0.399  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC----CSSCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.22  E-value=7.4e-12  Score=76.02  Aligned_cols=44  Identities=23%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP----SGPSS   45 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC----CSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            588999999999999999999999999999999999999    55544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.4e-12  Score=76.48  Aligned_cols=44  Identities=25%  Similarity=0.465  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC----CCSCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=7e-12  Score=75.95  Aligned_cols=44  Identities=27%  Similarity=0.462  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC----CSSCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.7e-12  Score=76.72  Aligned_cols=42  Identities=24%  Similarity=0.496  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=5.9e-12  Score=76.38  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            689999999999999999999999999999999999999443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.22  E-value=5.3e-13  Score=98.47  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +..|+ .|++++||.|..|++.|.....|..|+++|  ++|    |.|..         |++.|.+...|..|+++|++.
T Consensus        63 l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~----~~C~~---------C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           63 LYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT----KVCPV---------CKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC----CBCTT---------TCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC----CCCCC---------CCcccCCHHHHHHHHHHHCCc
Confidence            55565 689999999999999999999999999999  889    88888         999999999999999999875


Q ss_pred             C
Q 040864          139 G  139 (203)
Q Consensus       139 ~  139 (203)
                      -
T Consensus       127 ~  127 (129)
T 2wbt_A          127 C  127 (129)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=4.3e-12  Score=77.18  Aligned_cols=43  Identities=26%  Similarity=0.506  Sum_probs=39.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARR  103 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~  103 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++||.|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            4789999999999999999999999999999999999995443

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.22  E-value=6e-12  Score=76.26  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP----SGPSS   45 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC----CSTTC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55554

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=6.7e-12  Score=76.23  Aligned_cols=44  Identities=20%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT----SGPSS   45 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC----CCSCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC----CCCCC
Confidence            488999999999999999999999999999999999999    55554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=9e-12  Score=75.55  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN----SGPSS   45 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC----CCTTC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55544

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=8.8e-12  Score=74.96  Aligned_cols=42  Identities=24%  Similarity=0.364  Sum_probs=39.1

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            478999999999999999999999999999999999999544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=4.5e-12  Score=75.42  Aligned_cols=41  Identities=24%  Similarity=0.476  Sum_probs=38.5

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      |+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            78999999999999999999999999999999999999543

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=9.1e-12  Score=75.53  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=40.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP----SGPSS   45 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC----CSSCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC----CCCCC
Confidence            588999999999999999999999999999999999999    55554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=7.4e-12  Score=76.03  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=40.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP----SGPSS   45 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS----SCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC----CCCCC
Confidence            588999999999999999999999999999999999999    55544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-12  Score=84.68  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             ccCCCCCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCcccccc--ccccccccCCcCCCCCCCCCCCccccccc
Q 040864           62 RSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQN--HRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        62 H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C--~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      ....+...++|.|..  |++.|.....|..|+++|++++|    |.|  ..         |++.|.+...|..|+++|
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~~~---------C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP----FSCSWKG---------CERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS----EECCCTT---------CCCEESSHHHHHHHTTTC
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC----ccCCCCC---------CCcccCCHHHHHhHhhcC
Confidence            344567789999998  99999999999999999999999    677  45         999999999999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=6.9e-12  Score=76.08  Aligned_cols=44  Identities=20%  Similarity=0.386  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC----SSTTC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=7.1e-12  Score=76.09  Aligned_cols=42  Identities=26%  Similarity=0.509  Sum_probs=39.3

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcC-CCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKR-ERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~g-ekp~~c  102 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++ ++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            589999999999999999999999999999999999 999544

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=8.8e-12  Score=75.77  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=40.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP----SGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC----CCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            488999999999999999999999999999999999999    55544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.21  E-value=9.9e-13  Score=88.88  Aligned_cols=65  Identities=15%  Similarity=0.308  Sum_probs=59.9

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcccc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVAR  148 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~~  148 (203)
                      ||.|..|++.|.....|..|+++|.++++    |.|..         |++.|.....|..|+++|+++++|.|..+.+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   65 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP----YPCQY---------CGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK   65 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC----EECSS---------SCCEESSHHHHHHHHHHHHTCCCEECTTTSC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC----eeCCc---------CChhhCCHHHHHHHHHHhcCCCCCcCCCcch
Confidence            68999999999999999999999999999    88888         9999999999999999999988888776444

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.1e-11  Score=75.24  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=40.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL----SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC----CCSCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC----CCCCC
Confidence            478999999999999999999999999999999999999    55554

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.3e-12  Score=76.59  Aligned_cols=44  Identities=23%  Similarity=0.413  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS----SCSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=74.96  Aligned_cols=42  Identities=26%  Similarity=0.483  Sum_probs=39.2

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .|+++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999999999999999999433

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.8e-12  Score=75.84  Aligned_cols=44  Identities=27%  Similarity=0.486  Sum_probs=40.8

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      +|+++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP----SGPSS   45 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC----SCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            689999999999999999999999999999999999999    55544

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.8e-12  Score=75.83  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~   45 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP----SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS----SCCSC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC----CCCCC
Confidence            589999999999999999999999999999999999999    55544

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=4.3e-12  Score=88.43  Aligned_cols=67  Identities=13%  Similarity=0.019  Sum_probs=58.2

Q ss_pred             CcceecCCCCccCCCchhHHHHHHh-hcCCCCCccc----cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNA-HKRERGAARR----FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~-H~gekp~~c~----~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      ...|.|..|++.|.....|..|+++ |+++++..+.    |.|..         |++.|.....|..|+++|++++||.|
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR---------EGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSS---------TTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCC---------CCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            3457899999999999999999998 9998773322    57888         99999999999999999999999887


Q ss_pred             C
Q 040864          144 N  144 (203)
Q Consensus       144 ~  144 (203)
                      .
T Consensus        94 ~   94 (95)
T 2ej4_A           94 S   94 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=75.14  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHH-hhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQN-AHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~c~~~C~~  108 (203)
                      .|+++|++++||.|..|++.|.....|..|++ +|++++|    |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~----~~C~~   46 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP----SGPSS   46 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS----SSCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC----CCCCC
Confidence            58999999999999999999999999999999 9999999    55544

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=75.08  Aligned_cols=42  Identities=29%  Similarity=0.551  Sum_probs=39.4

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            689999999999999999999999999999999999999443

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=74.50  Aligned_cols=42  Identities=26%  Similarity=0.503  Sum_probs=39.3

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +|+++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999999999999999433

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=73.59  Aligned_cols=40  Identities=28%  Similarity=0.463  Sum_probs=38.5

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      +|+++|++++||.|.+|++.|.....|..|+++|++++||
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            5899999999999999999999999999999999999994

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.4e-11  Score=74.44  Aligned_cols=41  Identities=27%  Similarity=0.542  Sum_probs=38.0

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      +.++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            56789999999999999999999999999999999999544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=3.8e-11  Score=75.59  Aligned_cols=48  Identities=27%  Similarity=0.434  Sum_probs=44.2

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHH-hhcCCCCCccccccccccccccCCcCCCCCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQN-AHKRERGAARRFQNHRMMMSSIGFLFNSVPLR  124 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~  124 (203)
                      ..|++++||.|.+|++.|.....|..|++ +|++++|    |.|..         |++.|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~----~~C~~---------C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP----HKCQV---------WVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC----CCSSS---------SCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC----ccCCC---------CCCCCCC
Confidence            45788999999999999999999999997 9999999    88888         9999986

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.14  E-value=2e-11  Score=85.45  Aligned_cols=63  Identities=21%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             hcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           60 DRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        60 ~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      ..+.++|++++||.|.+|++.|.....|..|+++|++++|    |.|..         |    .+...|..|+++|.+..
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp----~~C~~---------~----~~~~~~~~~~~~~~~~~   76 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ----KRAKR---------Q----ERRKQLLSKQKYADGAF   76 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH----HHCCC---------C----SCCCCCCCCCCCCCCSS
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC----cccch---------h----hhHHHHHhhhccccccc
Confidence            4456789999999999999999999999999999999999    77665         4    45777889999998755

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.13  E-value=4.7e-12  Score=87.41  Aligned_cols=63  Identities=25%  Similarity=0.315  Sum_probs=54.3

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      ++||.|..|++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|++ .++.+..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~h~~-~~~~c~~   63 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP----FACDI---------CGRKFARSDERKRHRDIQHI-LPILEDK   63 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC----EECTT---------TCCEESSHHHHHHHHHHHTH-HHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC----ccCCC---------CCCccCCHHHHHHHHHHhCC-CcchHHH
Confidence            5789999999999999999999999999999    88888         99999999999999999875 3344433

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.8e-11  Score=71.43  Aligned_cols=40  Identities=28%  Similarity=0.464  Sum_probs=36.7

Q ss_pred             cCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           63 SKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        63 ~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            3678999999999999999999999999999999999544

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3e-11  Score=71.36  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             cCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           63 SKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        63 ~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      .++|++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3678999999999999999999999999999999999543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.11  E-value=1.6e-11  Score=86.07  Aligned_cols=69  Identities=16%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             CCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           67 SGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        67 tgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      ...++|.|..  |++.|.....|..|+++|.++++    |.|.  .         |++.|.....|..|+++|++++||.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~~h~~~~~~~   77 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP----YKCTWEG---------CDWRFARSDELTRHYRKHTGAKPFQ   77 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC----EECCSSS---------CCCEESSHHHHHHHHHHHTSCCSCB
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC----eeCCCCC---------CCCccCCHHHHHHHHHHhCCCCCeE
Confidence            4567899997  99999999999999999999999    6673  6         9999999999999999999999888


Q ss_pred             CCcccc
Q 040864          143 PNLVAR  148 (203)
Q Consensus       143 ~~~~~~  148 (203)
                      |..+.+
T Consensus        78 C~~C~~   83 (100)
T 2ebt_A           78 CGVCNR   83 (100)
T ss_dssp             CSSSCC
T ss_pred             CCCCcC
Confidence            877544

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.9e-11  Score=72.19  Aligned_cols=43  Identities=23%  Similarity=0.475  Sum_probs=39.2

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      ++++|+++++|.|..|++.|.....|..|+++|++++|    |.|..
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP----SGPSS   45 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC----CSCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC----CCCCC
Confidence            57889999999999999999999999999999999999    55544

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=7.7e-11  Score=71.48  Aligned_cols=41  Identities=17%  Similarity=0.368  Sum_probs=37.8

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      ++++|+++++|.|..|++.|.....|..|+++|++++||.|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            46889999999999999999999999999999999999444

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.09  E-value=2.5e-11  Score=76.36  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCC
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      ...++..|+++|++++||.|..|++.|.....|..|+++|++++||
T Consensus         8 ~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            8 HPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             CCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4455889999999999999999999999999999999999999994

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.08  E-value=3.7e-11  Score=80.77  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             CCchhcccC-CCCCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCC
Q 040864           56 GDSTDRRSK-PASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPL  123 (203)
Q Consensus        56 ~~~~~~H~r-~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~  123 (203)
                      ...+..|++ .|+++++|.|..  |++.|.....|..|+++|++++|    |.|..         |++.|.
T Consensus        22 ~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~---------C~k~F~   79 (79)
T 2dlk_A           22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD----YICEF---------SGPSSG   79 (79)
T ss_dssp             HHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC----CSCCS---------SSCCCC
T ss_pred             HHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC----eeCCC---------CCCCCC
Confidence            334899999 799999999999  99999999999999999999999    88888         999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.08  E-value=1.1e-11  Score=80.79  Aligned_cols=44  Identities=18%  Similarity=0.349  Sum_probs=39.9

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      ....+..|+++|++++||.|.+|+++|...+.|..|+++|+|++
T Consensus        16 ~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           16 DASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             SHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            33348999999999999999999999999999999999999975

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.08  E-value=8.3e-12  Score=85.68  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             CcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           69 NKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        69 ekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .++|.|..  |++.|.....|..|+++|.++++    |.|.  .         |++.|.....|..|+++|++++||.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~~~---------C~~~f~~~~~l~~H~~~h~~~~~~~C~   69 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP----YHCDWDG---------CGWKFARSDELTRHYRKHTGHRPFQCQ   69 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC----EECCSTT---------TCCEESSHHHHHHHHHHHHCCCCEECS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC----cCCCCCC---------CCCccCCHHHHHHHHHHcCCCCCccCC
Confidence            46899999  99999999999999999999999    6774  6         999999999999999999998888877


Q ss_pred             cccc
Q 040864          145 LVAR  148 (203)
Q Consensus       145 ~~~~  148 (203)
                      .+.+
T Consensus        70 ~C~~   73 (89)
T 2wbs_A           70 KCDR   73 (89)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            6444

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.6e-12  Score=92.01  Aligned_cols=70  Identities=4%  Similarity=-0.070  Sum_probs=62.8

Q ss_pred             CchhcccCC--CCCCccee-cCCCCccC--CCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccc
Q 040864           57 DSTDRRSKP--ASGNKVFS-CNFCMRKF--YSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH  131 (203)
Q Consensus        57 ~~~~~H~r~--Htgekp~~-C~~Cgk~F--~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H  131 (203)
                      ..+..|+++  |.+.+++. |..|++.|  .....|..|+++|++++|    |.|..         |++.|.+...|..|
T Consensus        33 ~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H   99 (115)
T 2dmi_A           33 VELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV----LKCMY---------CGHSFESLQDLSVH   99 (115)
T ss_dssp             HHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS----CBCSS---------SCCBCSSHHHHHHH
T ss_pred             HHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc----eECCC---------CCCccCCHHHHHHH
Confidence            348899988  87788765 99999999  899999999999999999    88888         99999999999999


Q ss_pred             ccccCCCC
Q 040864          132 SLVDRSSG  139 (203)
Q Consensus       132 ~r~H~~~~  139 (203)
                      +++|+...
T Consensus       100 ~~~hh~~~  107 (115)
T 2dmi_A          100 MIKTKHYQ  107 (115)
T ss_dssp             HHHTTTTT
T ss_pred             HHHhCCcc
Confidence            99987665

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=1e-10  Score=70.47  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=37.9

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      ..|++++||.|..|++.|.....|..|+++|+++++    |.|..
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~----~~C~~   43 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG----KSGPS   43 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC----CCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC----CCCcC
Confidence            468999999999999999999999999999999999    66666

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.4e-11  Score=72.10  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=39.0

Q ss_pred             ccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           62 RSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        62 H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .+++|+++++|.|.+|++.|.....|..|+++|++++|    |.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP----SGPSS   45 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC----CSCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC----CCCCC
Confidence            46789999999999999999999999999999999999    55544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.02  E-value=1.6e-10  Score=67.45  Aligned_cols=37  Identities=46%  Similarity=0.911  Sum_probs=33.7

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      |++++||.|..|++.|.....|..|+++|++++||.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            5789999999999999999999999999999999544

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=1.9e-10  Score=66.16  Aligned_cols=37  Identities=19%  Similarity=0.478  Sum_probs=34.9

Q ss_pred             cCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           63 SKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        63 ~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +++|++++||.|..|++.|.....|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999999986

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.8e-10  Score=70.07  Aligned_cols=44  Identities=23%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             cccCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           61 RRSKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        61 ~H~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|.++|+++++|.|.  .|++.|.....|..|+++|++++|    |.|..
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   47 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP----SGPSS   47 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS----CSSCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC----CCCCC
Confidence            467899999999998  899999999999999999999999    55554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.99  E-value=1.4e-11  Score=83.51  Aligned_cols=66  Identities=12%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             chhcccCCCCCCcceecCC--CCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           58 STDRRSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      .+..|+++|+++++|.|..  |++.|.....|..|+++|++   |.|.. +..         |++.|.....|..|+++|
T Consensus        18 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~-~~~---------C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKK-DDS---------CSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCS-CSS---------CCCEESSHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCC-CCC---------CCCccCCHHHHHHHHHhc
Confidence            3778888888888888887  88888888888888888887   44442 233         888888888888888877


Q ss_pred             C
Q 040864          136 R  136 (203)
Q Consensus       136 ~  136 (203)
                      +
T Consensus        85 h   85 (85)
T 2j7j_A           85 H   85 (85)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=2e-10  Score=70.31  Aligned_cols=40  Identities=20%  Similarity=0.415  Sum_probs=37.3

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcccccccc
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHR  108 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~  108 (203)
                      .|+++++|.|.+|++.|.....|..|+++|++++|    |.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~----~~C~~   45 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP----YSSGP   45 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC----CCSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC----ccCCC
Confidence            46789999999999999999999999999999999    77877

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=1.5e-10  Score=77.69  Aligned_cols=46  Identities=20%  Similarity=0.467  Sum_probs=42.6

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      ..+..|+++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus        32 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           32 SDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             HHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             HHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3489999999999999999999999999999999999999999543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.96  E-value=3.3e-10  Score=65.07  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=34.9

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      .|+++|++++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            4889999999999999999999999999999999875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.3e-10  Score=78.72  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=59.6

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +..|+++|.+++|+.|.+|++.|. ...|..|+ .|.+++|    +.|..         |++.|.+ ..|..|+++|.++
T Consensus         5 L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~----~~C~~---------C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            5 SSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART----ELCGN---------CGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE----EECSS---------SCCEEET-TGGGTHHHHBTTB
T ss_pred             HHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc----eEccc---------CCCcCcH-HHHHHHHHHccCC
Confidence            788999999999999999999995 89999999 8999999    88888         9998874 8899999999887


Q ss_pred             C
Q 040864          139 G  139 (203)
Q Consensus       139 ~  139 (203)
                      .
T Consensus        69 ~   69 (75)
T 2d9k_A           69 G   69 (75)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.92  E-value=3.5e-11  Score=75.69  Aligned_cols=52  Identities=8%  Similarity=-0.061  Sum_probs=48.1

Q ss_pred             CccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           78 MRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        78 gk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      ++.|.....|..|+++|++++|    |.|..         |++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQP----ATCPI---------CYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCC----EECTT---------TCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCC----ccCCC---------CCcccCCHHHHHHHHHHhccCCCCC
Confidence            4778899999999999999999    88988         9999999999999999999999863

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.92  E-value=7.6e-10  Score=62.54  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=33.0

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +|++++||.|..|++.|.....|..|+++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            47899999999999999999999999999999886

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.90  E-value=3.3e-10  Score=75.43  Aligned_cols=44  Identities=23%  Similarity=0.441  Sum_probs=41.5

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      ..+..|+++|+++++|.|..|++.|.....|..|+++|++++||
T Consensus        31 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             HHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34899999999999999999999999999999999999999993

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.89  E-value=8.9e-10  Score=62.42  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=33.0

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +|++++||.|..|++.|.....|..|+++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            47899999999999999999999999999999876

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.3e-09  Score=72.83  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             CCCCCcceecCC--CCccCCCchhHHHHH-HhhcCCCCCcc
Q 040864           65 PASGNKVFSCNF--CMRKFYSSQALGGHQ-NAHKRERGAAR  102 (203)
Q Consensus        65 ~Htgekp~~C~~--Cgk~F~~~~~L~~H~-r~H~gekp~~c  102 (203)
                      .++++|||+|.+  |+|+|.+.++|..|+ ++|+++|||.|
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            358999999976  999999999999997 79999999433

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.86  E-value=1.5e-10  Score=78.38  Aligned_cols=56  Identities=18%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             ceec--CCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           71 VFSC--NFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        71 p~~C--~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      ||.|  ..|++.|.....|..|+++|.+++|    |.|..     .+  |++.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~-----~~--C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP----YECPH-----EG--CDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC----EECCS-----TT--CCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC----eeCCC-----CC--CcCccCCHHHHHHHHHHhCC
Confidence            6899  9999999999999999999999999    66632     11  99999999999999999988

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=2.2e-09  Score=61.62  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             CCCCCCcceecCCCCccCCCc-hhHHHHHHhhcCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSS-QALGGHQNAHKRER   98 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~-~~L~~H~r~H~gek   98 (203)
                      ++|++++||.|..|++.|... ..|..|+++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            578999999999999999999 99999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.83  E-value=2e-09  Score=60.65  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCCCCc
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGAA  101 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~  101 (203)
                      +||.|..|++.|.....|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            58999999999999999999999999999953

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=3.6e-09  Score=60.30  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=32.6

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +.|++++||.|..|++.|.....|..|+++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            46899999999999999999999999999999875

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.79  E-value=7.7e-12  Score=86.30  Aligned_cols=66  Identities=17%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      ..+..|+++|++++||.|..|++.|.....|..|+++|.+ ++    +.|..         |++.|.....|..|++.++
T Consensus        17 ~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~----~~c~~---------C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           17 DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP----ILEDK---------VEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HH----HHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-Cc----chHHH---------HHHHHHHHhhhHHHHHHHH
Confidence            3489999999999999999999999999999999999985 66    88888         9999999999999987653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.1e-09  Score=60.56  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +.|++++||.|..|++.|.....|..|+++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=4.6e-09  Score=59.64  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .+|++++||.|..|++.|.....|..|+++|+++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            36889999999999999999999999999999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.8e-10  Score=67.71  Aligned_cols=44  Identities=11%  Similarity=0.150  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKP----YQCNE---------CGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCS----SSCCS---------SCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCC----eECCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999    88888         9999999999999999999999998864

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=4.3e-09  Score=60.69  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.8

Q ss_pred             CCCCcceecC--CCCccCCCchhHHHHHHhhcCCCCC
Q 040864           66 ASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        66 Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      |++++||.|.  .|++.|.....|..|+++|++++||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            6789999999  5999999999999999999999994

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5.2e-10  Score=67.71  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         3 h~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKP----YKCQV---------CGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCS----CBCSS---------SCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcc----cCCCC---------CCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999998864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5e-10  Score=67.62  Aligned_cols=44  Identities=9%  Similarity=0.158  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            2 SSGSSGTGKKP----YKCNE---------CGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSS----CBCTT---------TCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCCcCCCCCcC----eECCC---------CCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=5.7e-10  Score=65.89  Aligned_cols=41  Identities=12%  Similarity=0.100  Sum_probs=37.8

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKP----YRCDQ---------CGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCS----BCCTT---------TTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCC----eeCCC---------ccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            6788999999    88888         99999999999999999999998865

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=3.8e-09  Score=60.87  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             cCCCCCCcceecCCCCccCCCchhHHHH-HHhhcCC
Q 040864           63 SKPASGNKVFSCNFCMRKFYSSQALGGH-QNAHKRE   97 (203)
Q Consensus        63 ~r~Htgekp~~C~~Cgk~F~~~~~L~~H-~r~H~ge   97 (203)
                      +++|++++||.|..|++.|.....|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4689999999999999999999999999 9999875

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=6.9e-10  Score=67.06  Aligned_cols=43  Identities=12%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKP----YECDV---------CRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSS----CBCTT---------TCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCC----cCCCC---------cCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999    88888         9999999999999999999999998864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=4.8e-10  Score=67.70  Aligned_cols=44  Identities=11%  Similarity=0.166  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKP----YKCNE---------CGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCS----CBCSS---------SCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcC----eECCC---------CCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=5.2e-09  Score=61.65  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             CCCCCcceecCC--CCccCCCchhHHHHHHhhcCCC
Q 040864           65 PASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        65 ~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .++++|||.|..  |+++|...+.|..|+++|+++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            368899999986  9999999999999999999863

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=5.8e-10  Score=67.35  Aligned_cols=44  Identities=11%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            2 SSGSSGMGEKT----WKCRE---------CDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCC----CCCSS---------SCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             CCcCccCCCcC----eECCC---------CCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            47789999999    88888         9999999999999999999999998764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.2e-10  Score=67.28  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKP----FQCEE---------CGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSS----BCCSS---------SCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcC----CCCCC---------CCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788999999    88888         9999999999999999999999998864

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=4.3e-10  Score=68.02  Aligned_cols=44  Identities=11%  Similarity=0.157  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            2 SSGSSGTGGKH----FECTE---------CGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSSCC----EECSS---------SCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             ccccccCCCCC----eECCC---------CCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36789999999    88988         9999999999999999999999998864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=5.7e-10  Score=67.37  Aligned_cols=44  Identities=11%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKP----YKCNE---------CGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCT----TCCSS---------SCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcC----eECCC---------CCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.74  E-value=3.3e-10  Score=67.05  Aligned_cols=42  Identities=7%  Similarity=0.033  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|+
T Consensus         1 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENP----YECSE---------CGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCS----EECSS---------SCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCC----ccCCC---------cChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5678999999    88888         999999999999999999999998764

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.1e-10  Score=67.31  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKC----YKCDV---------CGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCC----CBCSS---------SCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCC----eECCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=3.9e-10  Score=66.63  Aligned_cols=42  Identities=5%  Similarity=0.024  Sum_probs=38.2

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      |+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|.
T Consensus         1 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKP----YSCAE---------CKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCS----CBCTT---------TCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCC----eECCC---------CCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5678999999    88888         999999999999999999999998763

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.1e-10  Score=67.24  Aligned_cols=43  Identities=14%  Similarity=0.230  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|+.|+++|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            3 SGSSGTGEKP----FDCID---------CGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCS----BCCTT---------TCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             CCCCcCCCCC----eECCC---------CCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6789999999    88888         9999999999999999999999998764

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=7e-09  Score=58.85  Aligned_cols=34  Identities=29%  Similarity=0.537  Sum_probs=32.0

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .|+++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999875

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.1e-10  Score=67.24  Aligned_cols=44  Identities=9%  Similarity=0.193  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKP----YKCNE---------CGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCC----CCCTT---------TTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCC----eECCc---------CChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.6e-10  Score=67.31  Aligned_cols=44  Identities=9%  Similarity=0.200  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKP----YECSD---------CGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----SCCSS---------SCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCC----cCCCC---------CCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.6e-10  Score=67.85  Aligned_cols=43  Identities=9%  Similarity=0.162  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKP----YECKE---------CRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCS----CCCSS---------SCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCC----cCCCC---------cCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999988764

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.73  E-value=5.9e-10  Score=67.39  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            3 SGSSGTGEKP----FKCVE---------CGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCS----BCCSS---------SCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCCCCC----cccCc---------cCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999    88888         9999999999999999999999998864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.3e-10  Score=68.00  Aligned_cols=44  Identities=14%  Similarity=0.175  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERH----YECSE---------CGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCC----EECSS---------SCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCC----eECCc---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36789999999    88888         9999999999999999999999998864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.7e-10  Score=67.14  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            3 SGSSGSVEKP----YKCED---------CGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCSCCCCCSS----CBCSS---------SCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCCCCC----eeCcc---------cCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999998764

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=7.1e-10  Score=67.00  Aligned_cols=43  Identities=9%  Similarity=0.030  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            3 SGSSGAGEKP----YGCSE---------CGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCSSCCCS----CBCSS---------SCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             CCcCcCCCCC----cCCCc---------cChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999998764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.7e-10  Score=66.96  Aligned_cols=44  Identities=9%  Similarity=0.074  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            2 SSGSSGTGEKP----HECRE---------CGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCS----CBCTT---------TCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             CCccccCCCCC----eeCCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999    88888         9999999999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=2.9e-09  Score=73.76  Aligned_cols=46  Identities=15%  Similarity=0.134  Sum_probs=41.6

Q ss_pred             CchhcccCC-CCCCcc--------eecCCCCccCCCchhHHHHHHhhcCCCCCcc
Q 040864           57 DSTDRRSKP-ASGNKV--------FSCNFCMRKFYSSQALGGHQNAHKRERGAAR  102 (203)
Q Consensus        57 ~~~~~H~r~-Htgekp--------~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c  102 (203)
                      ..+..|+++ |+++++        |.|..|++.|.....|..|+++|++++||.|
T Consensus        39 ~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             HHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             HHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            348999997 999988        9999999999999999999999999999544

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.7e-10  Score=67.04  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=39.9

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENP----FICSE---------CGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCS----CBCTT---------TCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCC----EECCc---------cCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998764

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.9e-10  Score=67.66  Aligned_cols=44  Identities=9%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            2 SSGSSGTGEKP----YRCAE---------CGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSCCCS----EECSS---------SCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCCCCCC----eECCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=7.6e-10  Score=66.71  Aligned_cols=44  Identities=9%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            2 SSGSSGTGEKP----YKCNE---------CGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSCCT----TCCTT---------TCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCCcCCCCCcC----cCCCC---------CCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998764

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.72  E-value=5.3e-10  Score=67.43  Aligned_cols=44  Identities=7%  Similarity=0.006  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            2 SSGSSGTGVKP----YGCSQ---------CAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCS----EECSS---------SSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             ccccCCCCCCc----eECCC---------CCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.1e-10  Score=66.67  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            2 SSGSSGTGEKP----FKCGE---------CGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----EECTT---------TCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCCCCCCC----eECCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999    88988         9999999999999999999999998764

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.8e-10  Score=66.21  Aligned_cols=43  Identities=2%  Similarity=-0.058  Sum_probs=39.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKP----YVCNE---------CGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSS----SCCTT---------TCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcC----eECCC---------CCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            36788999999    88888         999999999999999999999998763

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5.6e-10  Score=67.32  Aligned_cols=44  Identities=9%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKP----YICNE---------CGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCS----EECSS---------SCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcC----EECCC---------CChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.71  E-value=5.1e-10  Score=67.59  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            2 SSGSSGTGEKR----YKCNE---------CGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCSSCTTSCC----EECSS---------SCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCccCCCCCcC----cCCCC---------CcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=8.2e-10  Score=65.34  Aligned_cols=41  Identities=10%  Similarity=0.074  Sum_probs=37.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKP----YPCEI---------CGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCC----BCCSS---------SCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCC----EECCC---------CCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6678999999    88888         99999999999999999999998865

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.1e-10  Score=67.57  Aligned_cols=44  Identities=14%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERH----YECSE---------CGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCC----EECSS---------SCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCC----CCCCC---------CCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36789999999    88888         9999999999999999999999998764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=3.4e-10  Score=68.45  Aligned_cols=43  Identities=9%  Similarity=0.071  Sum_probs=39.9

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRP----YECIE---------CGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSS----EECSS---------SCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcC----cCCCC---------CCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6789999999    88888         9999999999999999999999998864

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6.1e-10  Score=67.24  Aligned_cols=44  Identities=11%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            2 SSGSSGTGEKP----YKCNE---------CGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCSSS----EECSS---------SCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CcccCCCCCCC----eECCC---------CCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            37789999999    88888         9999999999999999999999998764

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6.4e-10  Score=67.14  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            2 SSGSSGTGEKP----YKCHE---------CGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCTTCCCC----EECTT---------TCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCcCCCCCCC----eECCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=6e-10  Score=67.17  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A            2 SSGSSGTGEKL----YNCKE---------CGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCC----CCBTT---------TTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCcccCCCCCC----eECCC---------CCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998864

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.4e-10  Score=67.47  Aligned_cols=44  Identities=9%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            2 SSGSSGTGEKP----YICAE---------CGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CSSCTTSSCCS----EECSS---------SCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CcccCCCCCcC----eECCC---------CChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.69  E-value=6e-10  Score=67.36  Aligned_cols=44  Identities=11%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A            2 SSGSSGTGEKP----YECKE---------CGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCS----CBCSS---------SCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCccCCCCc----eECCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47788999999    88888         9999999999999999999999998764

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=7.3e-10  Score=66.88  Aligned_cols=44  Identities=11%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            2 SSGSSGTGEKP----YKCEE---------CGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCCCS----EECSS---------SCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCCCCcC----ccCCC---------ccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998764

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6.3e-10  Score=67.18  Aligned_cols=44  Identities=9%  Similarity=0.147  Sum_probs=40.3

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            2 SSGSSGTGEKP----YECSI---------CGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCCS----EECSS---------SCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCCCCcC----cCCCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=58.20  Aligned_cols=34  Identities=29%  Similarity=0.697  Sum_probs=31.5

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .|++++||.|..|++.|.....|..|+++|+++|
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999999875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6.6e-10  Score=66.98  Aligned_cols=44  Identities=9%  Similarity=0.173  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKP----YRCGE---------CGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCC----EECSS---------SCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCC----eECCC---------CCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998864

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6e-10  Score=67.17  Aligned_cols=44  Identities=11%  Similarity=0.187  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            2 SSGSSGTGEKP----YKCNE---------CGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCSSCCCCCCS----SEETT---------TTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCCCCCCC----eECCC---------cChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998764

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=7.8e-10  Score=66.76  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            2 SSGSSGTGEKP----FKCDI---------CGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCS----CCCSS---------SCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCCCCCCC----cCCCc---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999    88888         9999999999999999999999998764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.68  E-value=6.6e-09  Score=68.22  Aligned_cols=43  Identities=14%  Similarity=0.309  Sum_probs=40.9

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      ..+..|+++|+++++|.|.+|++.|.....|..|+++|.+++|
T Consensus        23 ~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A           23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             HHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            3489999999999999999999999999999999999999998

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.68  E-value=7.3e-09  Score=63.48  Aligned_cols=35  Identities=20%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHH-hhcCCCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQN-AHKRERG   99 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp   99 (203)
                      +|+++|||.|.+|++.|.....|..|++ +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            5899999999999999999999999999 9999866

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6.6e-10  Score=67.08  Aligned_cols=44  Identities=9%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            2 SSGSSGTGEKP----YECSV---------CGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----EECSS---------SCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             CccCCcCCCCC----eeCCC---------cCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            47789999999    88989         9999999999999999999999998764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.68  E-value=8.8e-09  Score=62.69  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=35.6

Q ss_pred             hhcccCCCCCCcceecC--CCCccCCCchhHHHHHHhhcCCC
Q 040864           59 TDRRSKPASGNKVFSCN--FCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~--~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      ...|...|++++||.|.  .|++.|...+.|..|+++|+++|
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            45566779999999996  79999999999999999999875

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.68  E-value=8.4e-10  Score=66.52  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            2 SSGSSGTGEKP----YNCKE---------CGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CSCCSCCCCCS----EECSS---------SCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCCCCCCcC----eECCc---------cccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            37789999999    88888         9999999999999999999999998764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=7.4e-10  Score=66.94  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~h~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKL----FKCNE---------CKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCC----CBCTT---------TCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCC----EECCc---------cCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=6.8e-10  Score=66.38  Aligned_cols=43  Identities=9%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENP----FKCSK---------CDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCS----EECSS---------SSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCC----eECCC---------CCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            47788999999    88988         999999999999999999999988763

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=7.7e-10  Score=66.69  Aligned_cols=44  Identities=9%  Similarity=0.169  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKP----YECNQ---------CGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCS----SEETT---------TTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCC----eECCC---------CChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=8e-10  Score=66.61  Aligned_cols=44  Identities=11%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            2 SSGSSGSGEKS----HTCDE---------CGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSS----EECTT---------TCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CccccCCCCCC----eECCC---------cCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999    88888         9999999999999999999999998764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.7e-10  Score=66.96  Aligned_cols=44  Identities=11%  Similarity=0.117  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKP----FECSE---------CQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCS----EECSS---------SCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCC----cCCCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.67  E-value=4.4e-10  Score=67.96  Aligned_cols=44  Identities=14%  Similarity=0.148  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKP----FECAE---------CGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCS----EECSS---------SSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCC----EECCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36789999999    88988         9999999999999999999999998864

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4.3e-10  Score=68.00  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKP----YKCSD---------CGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCC----EECSS---------SCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccCCCCC----EECcc---------cCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            47788999999    88888         9999999999999999999999988864

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.1e-10  Score=66.60  Aligned_cols=44  Identities=9%  Similarity=0.021  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            2 SSGSSGTGEKP----CKCTE---------CGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCS----EECSS---------SCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             cCcccCCCCCC----eeCCC---------CCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46788999999    88988         9999999999999999999999998764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.2e-10  Score=66.19  Aligned_cols=43  Identities=9%  Similarity=0.062  Sum_probs=39.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENP----YECCE---------CGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCS----CEETT---------TTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcC----eeCCC---------CCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            37789999999    88888         999999999999999999999988763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.3e-10  Score=67.51  Aligned_cols=44  Identities=9%  Similarity=0.137  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKP----YECKV---------CSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----EECSS---------SCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcC----eECCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999    88988         9999999999999999999999998864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=5.8e-10  Score=67.33  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            2 SSGSSGTGEKP----YKCNE---------CGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSS----EECSS---------SCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CcCcCCCCCCC----eECCc---------CCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998764

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=6.1e-10  Score=78.53  Aligned_cols=77  Identities=17%  Similarity=0.033  Sum_probs=59.7

Q ss_pred             ccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCC-CCCCCcccccccCC-CCCCCCCcccc-cCCCCC-
Q 040864           79 RKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPL-RSLGVQPHSLVDRS-SGALGPNLVAR-FGDATS-  154 (203)
Q Consensus        79 k~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~-~~~~L~~H~r~H~~-~~~~~~~~~~~-f~~~~~-  154 (203)
                      ..+.....+..|+++|+++++    |.|..         |++.|. ....|+.|+++|++ ++||.|..+.+ |..... 
T Consensus         4 ~s~~~~~~~~~h~~~h~~~~~----~~C~~---------C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L   70 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIHERGE----AVCPT---------CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGL   70 (98)
T ss_dssp             CCCCCCCSCSHHHHTTTTTSC----CCCTT---------TCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHH
T ss_pred             CCCCCCCcHHHHHHHhccCCC----cCCCC---------CCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHH
Confidence            346667778899999999999    88888         999999 99999999999998 88888887554 554432 


Q ss_pred             ---CCcccCCCccccccC
Q 040864          155 ---TGFDMIPWTPFMLED  169 (203)
Q Consensus       155 ---~~~~~~~~~p~~~~~  169 (203)
                         .+++ ++++|+....
T Consensus        71 ~~H~~~h-~~~kp~~~~~   87 (98)
T 2gqj_A           71 NYHTMAE-HSAKPSDAEA   87 (98)
T ss_dssp             HHHHHHH-SCSCSSCCCC
T ss_pred             HHHHHHH-cCCCCCCCCC
Confidence               3344 4777765543

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.9e-10  Score=66.27  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            2 SSGSSGSGEKP----FKCEE---------CGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSTTCCCCCCS----EEETT---------TTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             CcccCCCCCCC----eeCCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=5.8e-10  Score=67.25  Aligned_cols=44  Identities=9%  Similarity=0.125  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKP----YKCNE---------CGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCC----EECTT---------SCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCC----eeccc---------cCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=6.1e-10  Score=67.15  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A            2 SSGSSGTGERP----HKCNE---------CGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCS----EECSS---------SCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             CCcCCcCCCCC----eeCCC---------CChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.65  E-value=5.4e-09  Score=74.99  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=42.3

Q ss_pred             CchhcccC-CC---CCCcceecCCCCccCCCchhHHHH-HHhhcCCCCCcccccccc
Q 040864           57 DSTDRRSK-PA---SGNKVFSCNFCMRKFYSSQALGGH-QNAHKRERGAARRFQNHR  108 (203)
Q Consensus        57 ~~~~~H~r-~H---tgekp~~C~~Cgk~F~~~~~L~~H-~r~H~gekp~~c~~~C~~  108 (203)
                      ..+..|++ +|   ++++||.|..|++.|.....|..| +++|++++|    |.|..
T Consensus        32 ~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp----y~C~~   84 (102)
T 2ghf_A           32 NMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN----FKLTM   84 (102)
T ss_dssp             HHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC----EEEEE
T ss_pred             HHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC----eeCCc
Confidence            34889997 58   678999999999999999999999 899999999    66654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=9.9e-10  Score=66.36  Aligned_cols=44  Identities=11%  Similarity=0.120  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            2 SSGSSGSSTKS----HQCHE---------CGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCS----EECSS---------SCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCcCCCCCCCC----eECCc---------CCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998764

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.1e-10  Score=66.37  Aligned_cols=44  Identities=9%  Similarity=0.090  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            2 SSGSSGTGEKP----YKCSD---------CGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----CBCSS---------SCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCCCCCCCC----ccCCc---------cChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788999999    88888         9999999999999999999999998764

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=5.6e-10  Score=66.76  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=39.2

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         1 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            1 GSSGSSGEKP----FGCSC---------CEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CCCCCSSCCC----EECSS---------SSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             CCCCcCCCcC----ccCCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678999999    88988         9999999999999999999999998764

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=6.1e-10  Score=67.23  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            2 SSGSSGTGENP----YECHE---------CGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCC----EECSS---------SCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCCCCCCcC----cCCCC---------CCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998764

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=6e-10  Score=67.27  Aligned_cols=44  Identities=11%  Similarity=0.171  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            2 SSGSSGSGEKP----YKCNE---------CGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCS----EECSS---------SCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCcccCCCCCC----EeCCc---------CCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            46788999999    88888         9999999999999999999999998865

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.6e-09  Score=65.47  Aligned_cols=43  Identities=7%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-ccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|++ +|++++||.|..
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            3 SGSSGTGKKP----YECIE---------CGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCCCCCS----BCCSS---------SCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cccccCCCCC----EECCc---------cCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999 999999988764

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-09  Score=65.80  Aligned_cols=44  Identities=11%  Similarity=0.086  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.....|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            2 SSGSSGSGEKP----YVCDY---------CGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCTTCCCCS----EECSS---------SCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCCCCCCC----eECCC---------CChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999988764

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.63  E-value=1.1e-09  Score=66.14  Aligned_cols=44  Identities=9%  Similarity=0.086  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~h~~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            2 SSGSSGAGVNP----YKCSQ---------CEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             CSCCSSCCCCS----EECSS---------SSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCCCCCCC----eECCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998764

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.2e-09  Score=65.20  Aligned_cols=43  Identities=2%  Similarity=0.023  Sum_probs=39.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKR----YECSK---------CQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSS----EECTT---------TCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCC----eECCC---------CCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            46788999999    88888         999999999999999999999998763

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7.1e-10  Score=66.94  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            2 SSGSSGSGEKP----YKCSE---------CGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCS----EECSS---------SCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             CCccccCCCcC----eECCC---------CCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999    88988         9999999999999999999999998864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=8.3e-10  Score=65.99  Aligned_cols=43  Identities=5%  Similarity=0.116  Sum_probs=39.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKS----YNCNE---------CGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCC----EEETT---------TTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCC----eECcc---------cCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            36788999999    88988         999999999999999999999998763

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7.3e-10  Score=66.96  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            2 SSGSSGSGEKP----FKCKE---------CGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCS----EECSS---------SCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCC----EECCc---------CCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5e-10  Score=67.63  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            2 SSGSSGTGERP----YICTV---------CGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSCCCS----EECTT---------TCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCCCCCC----cCCCC---------CCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788999999    88988         9999999999999999999999998764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=8.6e-10  Score=66.57  Aligned_cols=44  Identities=11%  Similarity=0.175  Sum_probs=40.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ysp_A            2 SSGSSGTGEKP----YKCEK---------CGKGYNSKFNLDMHQKVHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCS----EEETT---------TTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred             CCCcCCCCCCC----eECCC---------CCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.1e-10  Score=67.67  Aligned_cols=44  Identities=14%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKP----YSCNV---------CGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCS----EEETT---------TTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCC----eECcc---------cChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47789999999    88888         9999999999999999999999998864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.4e-09  Score=65.64  Aligned_cols=42  Identities=10%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC-CCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS-SGALGPN  144 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~-~~~~~~~  144 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++ ++||.|.
T Consensus         3 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKC----FKCNK---------CEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCC----EECSS---------SCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCC----EECcC---------CCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6788999999    88988         99999999999999999999 9988774

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.63  E-value=2.1e-08  Score=57.66  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             CCCCCcceecCC--CCccCCCchhHHHHHHhhcCCC
Q 040864           65 PASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        65 ~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .|++++||.|.+  |++.|...+.|..|+++|+++|
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            478999999995  9999999999999999999875

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=6.1e-10  Score=67.16  Aligned_cols=44  Identities=11%  Similarity=0.208  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKP----YNCEE---------CGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCS----EECTT---------TCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcC----ccCCC---------CCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            37789999999    88988         9999999999999999999999998864

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=8.7e-10  Score=65.73  Aligned_cols=43  Identities=5%  Similarity=0.044  Sum_probs=39.0

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKP----YECNE---------CQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCS----EECTT---------TCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCC----eECCC---------CCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            36788999999    88988         999999999999999999999988763

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=8.2e-10  Score=66.81  Aligned_cols=43  Identities=9%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A            3 SGSSGTGEKP----YKCME---------CGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             SCCCCSSCCS----SSBTT---------TTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCcCCCCCCC----cCCCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999998864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.1e-09  Score=65.57  Aligned_cols=42  Identities=5%  Similarity=0.016  Sum_probs=38.5

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.+
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKP----YECNE---------CGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCS----EECSS---------SCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcC----eECCC---------CCcccCchHHHHHHHhHhcCCCCCCC
Confidence            47789999999    88888         99999999999999999999998865

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=6.5e-10  Score=67.12  Aligned_cols=44  Identities=7%  Similarity=0.110  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            2 SSGSSGTGVKP----YMCNE---------CGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCS----EECSS---------SCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             CcccccCCCcC----eECCC---------CCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998764

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1e-09  Score=66.25  Aligned_cols=43  Identities=12%  Similarity=0.107  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 h~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            3 SGSSGSGEKP----FKCEE---------CGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCCCS----EECSS---------SCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCCCCC----cCCCC---------CCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999    88888         9999999999999999999999998764

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.62  E-value=9.2e-10  Score=64.96  Aligned_cols=41  Identities=10%  Similarity=-0.005  Sum_probs=37.7

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |+++|++++|    |.|..         |++.|.++..|..|+++|++++||.|
T Consensus         2 H~~~H~~~~~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETP----YLCGQ---------CGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCC----EECSS---------SCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCC----eECCC---------CCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            5678999999    88988         99999999999999999999998865

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=5.6e-10  Score=66.00  Aligned_cols=41  Identities=12%  Similarity=0.210  Sum_probs=37.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|
T Consensus         2 H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKP----YKCET---------CGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCS----EECTT---------TCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCC----EeCCC---------cChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5678999999    88888         99999999999999999999998865

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=6.2e-10  Score=67.27  Aligned_cols=44  Identities=14%  Similarity=0.056  Sum_probs=40.2

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            2 SSGSSGSGERP----YGCNE---------CGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCC----EECSS---------SCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCCCCCCCC----EEccc---------cCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            47789999999    88988         9999999999999999999999998764

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=9.5e-10  Score=66.35  Aligned_cols=43  Identities=14%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 H~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A            3 SGSSGSREKS----HQCRE---------CGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             CSCCSSCCCC----EECTT---------TCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             cccccCCCCC----EEccc---------cChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999    88989         9999999999999999999999998764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.61  E-value=8.7e-09  Score=64.62  Aligned_cols=41  Identities=12%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             chhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           58 STDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        58 ~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      .+..|+++|+++++|.|..|++.|.....|..|+++|.+++
T Consensus        16 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           16 MLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             HHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             HHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            38899999999999999999999999999999999999876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=6e-10  Score=67.25  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~H~~~H~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en3_A            2 SSGSSGTGEKP----FQCKE---------CGMNFSWSCSLFKHLRSHERTDPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCS----EECSS---------SCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred             ccccccCCCCC----eeCcc---------cChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999    88988         9999999999999999999999998864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=8.4e-10  Score=66.69  Aligned_cols=44  Identities=16%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~h~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERP----FKCNE---------CGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCS----CCCSS---------SCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCC----eECCC---------CCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999    88888         9999999999999999999999998764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.8e-09  Score=64.58  Aligned_cols=42  Identities=5%  Similarity=-0.025  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         3 h~~~h~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTT----SECQE---------CGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCC----CCCTT---------TCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcC----eECCC---------CCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            6678999999    88888         999999999999999999999998763

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=8.7e-10  Score=66.54  Aligned_cols=44  Identities=9%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      .|+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         2 ~h~~~H~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            2 SSGSSGSGEKP----YGCNE---------CGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSCC----EEETT---------TTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             CCCCccCCCcC----eECCC---------CCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            46788999999    88888         9999999999999999999999998764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.58  E-value=2.3e-08  Score=67.70  Aligned_cols=53  Identities=15%  Similarity=0.268  Sum_probs=45.9

Q ss_pred             CchhcccCCCCCC----cceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCC
Q 040864           57 DSTDRRSKPASGN----KVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVP  122 (203)
Q Consensus        57 ~~~~~H~r~Htge----kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F  122 (203)
                      ..+..|++.|...    ++|.|..|++.|.....|..|+++|.++++    +.|..         |+.+|
T Consensus        29 ~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~----~~~~~---------~~~~~   85 (86)
T 1x6h_A           29 QLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG----VEGEN---------SGPSS   85 (86)
T ss_dssp             HHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS----CCCCC---------CCCCC
T ss_pred             HHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC----cccCC---------CCCCC
Confidence            3488998776654    799999999999999999999999999999    77777         87765

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=1.2e-09  Score=65.99  Aligned_cols=43  Identities=16%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         3 h~~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            3 SGSSGSGEKP----YKCVE---------CGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CCCCCCSCCS----EECSS---------SCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCCCCCCC----eECcc---------cCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            6778999999    88888         9999999999999999999999998764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.55  E-value=1.6e-08  Score=70.05  Aligned_cols=44  Identities=30%  Similarity=0.610  Sum_probs=39.3

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHH-HhhcCCC
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQ-NAHKRER   98 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~-r~H~gek   98 (203)
                      ....+.+|+++|++++||.|.+|++.|.....|..|+ ++|++|.
T Consensus        40 ~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           40 SKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             cHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            4445999999999999999999999999999999996 5798774

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.6e-09  Score=64.14  Aligned_cols=41  Identities=5%  Similarity=0.007  Sum_probs=37.6

Q ss_pred             HHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           91 QNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        91 ~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      .++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         4 ~~~h~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            4 GSSGTGQKP----FECTH---------CGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCSCCS----EEETT---------TTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCcC----ccCCC---------CCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            457999999    88988         999999999999999999999998875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.51  E-value=2.6e-08  Score=65.76  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      ..+..|+++|++++||.|.+|++.|.....|..|+++|+++.+
T Consensus        28 ~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           28 SILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             HHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            3489999999999999999999999999999999999998754

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=8.1e-09  Score=60.59  Aligned_cols=39  Identities=10%  Similarity=0.116  Sum_probs=35.7

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      ++|++++|    |.|..         |++.|.+...|..|+++|++++||.|
T Consensus         3 ~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRV----YECQE---------CGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCC----EECSS---------SCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCC----eECCC---------CCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            46899999    88888         99999999999999999999998865

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=5.7e-09  Score=62.98  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=38.1

Q ss_pred             HHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           91 QNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        91 ~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         4 ~~~h~~~k~----~~C~~---------C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERG----HRCSD---------CGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSS----CCCSS---------SCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCC----cCCCC---------CCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            467999999    88888         9999999999999999999999998864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=4.4e-09  Score=63.32  Aligned_cols=42  Identities=10%  Similarity=0.121  Sum_probs=38.3

Q ss_pred             HHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           91 QNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        91 ~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         4 ~~~h~~~~~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            4 GSSGTGEKP----YKCDV---------CHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSTTCCS----EECSS---------SCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCCCCCC----eeCcc---------cCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            467999999    88988         9999999999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.50  E-value=5.9e-08  Score=52.16  Aligned_cols=30  Identities=23%  Similarity=0.603  Sum_probs=28.0

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            579999999999999999999999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=5.7e-09  Score=63.22  Aligned_cols=43  Identities=16%  Similarity=0.086  Sum_probs=38.2

Q ss_pred             HHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           90 HQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      |.++|++++|    |.|.  .         |++.|.++..|..|+++|++++||.|..
T Consensus         3 ~~~~H~~~k~----~~C~~~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            3 SGSSGTGEKP----FACTWPG---------CGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             CCCSSCCCCC----EECCSSS---------CCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             CCCCcCCCCC----eECCCCC---------CCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4568999999    7886  7         9999999999999999999999998764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=9.7e-08  Score=63.06  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=32.8

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      ..|.++|||.|..|+|.|.+...|..|+++|++++.
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            347889999999999999999999999999999754

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.47  E-value=3.9e-09  Score=58.87  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      +||.|..|++.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            5899999999999999999999999999994

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.46  E-value=7.9e-08  Score=51.47  Aligned_cols=29  Identities=28%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            68999999999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.46  E-value=5.8e-09  Score=62.86  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             HHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCc
Q 040864           91 QNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNL  145 (203)
Q Consensus        91 ~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~  145 (203)
                      +++|++++|    |.|..         |++.|.+...|..|+++|++++||.|..
T Consensus         4 ~~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            4 GSSGEGEKP----YQCSE---------CGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             SSSCSCCCT----TCCSS---------SCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCCCC----eeCCC---------CCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            467999999    88888         9999999999999999999999998764

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=1e-07  Score=50.74  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=27.2

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            58999999999999999999999999875

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-08  Score=60.73  Aligned_cols=40  Identities=10%  Similarity=0.080  Sum_probs=36.5

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      ++|++++|    |.|..         |++.|.+...|..|+++|++++||.|.
T Consensus         3 ~~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGA----FFCNE---------CDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCC----BCCSS---------SCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCC----EECCC---------CCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            46899999    88888         999999999999999999999998875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.45  E-value=1.1e-07  Score=50.83  Aligned_cols=29  Identities=31%  Similarity=0.706  Sum_probs=27.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.44  E-value=9.6e-08  Score=50.95  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=27.3

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|..|++.|.....|..|+++|+++|
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            58999999999999999999999999875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.44  E-value=1.5e-07  Score=50.46  Aligned_cols=30  Identities=20%  Similarity=0.459  Sum_probs=27.9

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +||.|..|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            589999999999999999999999998864

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.41  E-value=1.5e-07  Score=51.79  Aligned_cols=30  Identities=23%  Similarity=0.596  Sum_probs=27.9

Q ss_pred             CcceecC--CCCccCCCchhHHHHHHhhcCCC
Q 040864           69 NKVFSCN--FCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        69 ekp~~C~--~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      ++||.|.  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5799999  89999999999999999999875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.38  E-value=4.9e-08  Score=61.08  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=36.5

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      ..+..|+++|++++||.|..|++.|.....|..|+++|.+
T Consensus        18 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           18 YYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             HHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            3489999999999999999999999999999999998864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=2.1e-08  Score=60.05  Aligned_cols=41  Identities=10%  Similarity=-0.103  Sum_probs=37.6

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcc
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLV  146 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~  146 (203)
                      +|++++|    |.|..         |++.|.++..|..|+++|+++++|.+..+
T Consensus         4 ~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            4 GSSGEKP----YSCPV---------CGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CCSSCCS----SEETT---------TTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CcCCCCC----CcCCC---------CCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            5889999    88888         99999999999999999999999988764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.5e-08  Score=52.80  Aligned_cols=30  Identities=33%  Similarity=0.590  Sum_probs=27.7

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      ++||.|..|++.|.....|..|+++|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            478999999999999999999999999874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.37  E-value=1e-07  Score=60.32  Aligned_cols=42  Identities=21%  Similarity=0.454  Sum_probs=38.0

Q ss_pred             CchhcccCCCCCCcceecCCCCccCCCchhHHHHH-HhhcCCC
Q 040864           57 DSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQ-NAHKRER   98 (203)
Q Consensus        57 ~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~-r~H~gek   98 (203)
                      ..+..|+++|+++++|.|..|++.|.....|..|+ ++|+++.
T Consensus        16 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           16 EHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             HHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             HHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            34899999999999999999999999999999997 7898764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=4.8e-08  Score=52.51  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=27.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|..|++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            58999999999999999999999999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.36  E-value=1.2e-07  Score=55.09  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHH
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQ   91 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~   91 (203)
                      +.++|||.|..|+|+|.+.++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            57899999999999999999999998

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.36  E-value=3.6e-08  Score=57.13  Aligned_cols=37  Identities=14%  Similarity=-0.047  Sum_probs=33.4

Q ss_pred             hcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCC
Q 040864           94 HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGP  143 (203)
Q Consensus        94 H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~  143 (203)
                      |++++|    |.|..         |++.|.....|..|+++|++++||..
T Consensus         1 h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRS----YTCSF---------CKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSS----EECTT---------TCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCc----eECCC---------CCcccCCHHHHHHHHHHcCCCcccee
Confidence            678899    88989         99999999999999999999998865

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.35  E-value=2e-08  Score=57.34  Aligned_cols=36  Identities=14%  Similarity=-0.027  Sum_probs=32.9

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |+++|++++|    |.|..         |++.|.+...|..|+++|+++
T Consensus         2 H~~~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKP----FQCPD---------CDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSS----BCCTT---------TCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCC----ccCCC---------CCcccCcHHHHHHHHHHhccC
Confidence            6778999999    88888         999999999999999999874

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.34  E-value=1.8e-07  Score=51.13  Aligned_cols=29  Identities=31%  Similarity=0.768  Sum_probs=27.1

Q ss_pred             cceecC--CCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCN--FCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~--~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  99999999999999999999875

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.34  E-value=8.4e-08  Score=67.57  Aligned_cols=62  Identities=5%  Similarity=-0.086  Sum_probs=53.4

Q ss_pred             CccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCC-CCCCCCcccccccCCCCCCCCCcccc-cCCCC
Q 040864           78 MRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVP-LRSLGVQPHSLVDRSSGALGPNLVAR-FGDAT  153 (203)
Q Consensus        78 gk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F-~~~~~L~~H~r~H~~~~~~~~~~~~~-f~~~~  153 (203)
                      ...|.....|..|+++|.+++|    |.|..         |++.| .....|+.|+++| +++||.|..+.+ |....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~----~~C~~---------C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~   76 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGS----VSCPT---------CQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLA   76 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSC----EECTT---------TCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCC----cCCCC---------CCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHH
Confidence            3467888899999999999999    88988         99999 9999999999999 999999887544 55544

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.32  E-value=2.5e-07  Score=48.86  Aligned_cols=27  Identities=30%  Similarity=0.565  Sum_probs=25.3

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            579999999999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.32  E-value=2e-07  Score=49.57  Aligned_cols=28  Identities=21%  Similarity=0.557  Sum_probs=26.0

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      ++||.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            5799999999999999999999999875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=1.2e-08  Score=58.27  Aligned_cols=36  Identities=6%  Similarity=0.013  Sum_probs=33.0

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      ++|++++|    |.|..         |++.|.+...|..|+++|++++|
T Consensus         2 ~~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRS----YSCPV---------CEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCC----CEETT---------TTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCC----cCCCC---------CCCccCCHHHHHHHHHHHcCCCC
Confidence            47899999    88888         99999999999999999999874

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.30  E-value=7.5e-08  Score=64.24  Aligned_cols=42  Identities=14%  Similarity=-0.043  Sum_probs=34.0

Q ss_pred             hcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc-cccCCCCCCCCCcc
Q 040864           94 HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRSSGALGPNLV  146 (203)
Q Consensus        94 H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~~~~~~~~~~  146 (203)
                      ++|+||    |+|..     .+  |+++|.+++.|+.|+ ++|++++||-+...
T Consensus        22 ~sGEKP----YkC~~-----~~--CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           22 YSPYRP----YRCVH-----QG--CFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SCSSCS----CBCCS-----TT--CCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             ccCCCC----eECCC-----CC--cChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            679999    66632     11  999999999999997 69999998877653

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.27  E-value=2.8e-07  Score=49.61  Aligned_cols=29  Identities=31%  Similarity=0.603  Sum_probs=26.7

Q ss_pred             cceecCCCCccCCCchhHHHH-HHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGH-QNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H-~r~H~gek   98 (203)
                      +||.|..|++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            589999999999999999999 78999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.27  E-value=2.2e-07  Score=49.32  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=25.1

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      ++||.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            579999999999999999999999884

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.25  E-value=6.6e-08  Score=54.40  Aligned_cols=35  Identities=14%  Similarity=0.013  Sum_probs=32.0

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      +|++++|    |.|..         |++.|.+...|..|+++|++++|
T Consensus         1 ~H~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRP----FVCRI---------CLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSC----EECSS---------SCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcC----eeCCC---------CCcccCCHHHHHHHHHHcCCCCC
Confidence            4789999    88888         99999999999999999999874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.25  E-value=9.9e-08  Score=62.79  Aligned_cols=41  Identities=34%  Similarity=0.633  Sum_probs=37.2

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhc
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      ....+..|+++|+++++|.|..|++.|.....|..|+++|+
T Consensus        33 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           33 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            33448999999999999999999999999999999999885

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.25  E-value=5.1e-08  Score=54.69  Aligned_cols=35  Identities=9%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      +|++++|    |.|..         |++.|.++..|..|+++|++++|
T Consensus         1 ~h~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSG----YVCAL---------CLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCS----EECSS---------SCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCC----eECCC---------CcchhCCHHHHHHHHHHHcCCCC
Confidence            4789999    88988         99999999999999999999874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=1e-07  Score=57.87  Aligned_cols=42  Identities=5%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCccc
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVA  147 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~  147 (203)
                      .|.++++    |.|..         |++.|.+...|..|+++|++++||.|..+.
T Consensus         6 ~~~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQ----VACEI---------CGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCS----EEETT---------TTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcC----eeCCC---------CCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            3677888    88888         999999999999999999999999987754

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.22  E-value=9.3e-09  Score=75.36  Aligned_cols=69  Identities=13%  Similarity=-0.054  Sum_probs=54.0

Q ss_pred             CCCcceecCCCCccCC------CchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864           67 SGNKVFSCNFCMRKFY------SSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~------~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      ..++.+.|.+|.+.|.      ....|..|+ .|++++|    |.|..         |++.|.....|..|+++|  ++|
T Consensus        37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~----~~C~~---------C~k~f~~~~~l~~H~~~H--~~~  100 (129)
T 2wbt_A           37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ----FVCPL---------CLMPFSSSVSLKQHIRYT--EHT  100 (129)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS----EECTT---------TCCEESSHHHHHHHHHHT--CCC
T ss_pred             hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC----eECCC---------CCcccCCHhHHHHHHHHC--CCC
Confidence            3457788888876665      566677776 6899999    88988         999999999999999999  777


Q ss_pred             CCCCcccc-cCC
Q 040864          141 LGPNLVAR-FGD  151 (203)
Q Consensus       141 ~~~~~~~~-f~~  151 (203)
                      |.|..+.+ |..
T Consensus       101 ~~C~~C~k~f~~  112 (129)
T 2wbt_A          101 KVCPVCKKEFTS  112 (129)
T ss_dssp             CBCTTTCCBCSS
T ss_pred             CCCCCCCcccCC
Confidence            77766433 443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=2.8e-07  Score=59.75  Aligned_cols=40  Identities=13%  Similarity=0.108  Sum_probs=37.4

Q ss_pred             hhcccCCCCCCcceecC-CCCccCCCchhHHHHHHhhcCCCC
Q 040864           59 TDRRSKPASGNKVFSCN-FCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~-~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +..|+++ ++++||.|. .|++.|.....|..|+++|...+|
T Consensus        25 L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           25 IQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             HHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             HHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            8889998 999999999 999999999999999999987766

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.20  E-value=4.3e-07  Score=47.66  Aligned_cols=27  Identities=37%  Similarity=0.801  Sum_probs=24.1

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            689999999999999999999999874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.19  E-value=2.8e-07  Score=51.03  Aligned_cols=30  Identities=23%  Similarity=0.102  Sum_probs=27.8

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      |.|..         |++.|.++..|..|+++|++++|++
T Consensus         3 ~~C~~---------C~k~f~~~~~L~~H~~~H~~~kp~~   32 (32)
T 2kfq_A            3 FACPA---------CPKRFMRSDALSKHIKTAFIVVALG   32 (32)
T ss_dssp             SSSSS---------SCTTHHHHHTTSSSTTSSSSSSSCC
T ss_pred             CCCCC---------CCcccCCHHHHHHHHHHHccCCCCC
Confidence            88888         9999999999999999999999763

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.19  E-value=6.2e-08  Score=55.62  Aligned_cols=36  Identities=8%  Similarity=-0.003  Sum_probs=32.2

Q ss_pred             hcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864           94 HKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus        94 H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      |++++|    |.|.  .         |++.|.+...|+.|+++|++++||.
T Consensus         1 H~~~k~----~~C~~~~---------C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKP----FLCTAPG---------CGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCC----EECCCTT---------TCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcc----eECCCCC---------CCcccCCHHHHHHHHHHhCCCCCCC
Confidence            678999    7777  6         9999999999999999999999763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.14  E-value=3.4e-07  Score=57.05  Aligned_cols=45  Identities=9%  Similarity=-0.076  Sum_probs=39.0

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-ccCCCCCCCCCcccc-cC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VDRSSGALGPNLVAR-FG  150 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H~~~~~~~~~~~~~-f~  150 (203)
                      .|++++|    |.|..         |++.|.+...|..|++ +|++++||.|..+.+ |.
T Consensus         6 ~~~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            6 SGSVGKP----YICQS---------CGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCCSSCC----EECSS---------SCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCC----eECCC---------CCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            4778899    88988         9999999999999997 999999999988544 54

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.12  E-value=7.2e-07  Score=57.36  Aligned_cols=40  Identities=20%  Similarity=0.460  Sum_probs=36.1

Q ss_pred             CchhcccCC-C-CCCcceecCCCCccCCCchhHHHHHHhhcC
Q 040864           57 DSTDRRSKP-A-SGNKVFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        57 ~~~~~H~r~-H-tgekp~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      ..+..|++. | +++++|.|..|++.|.....|..|+++|.+
T Consensus        24 ~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           24 SNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             HHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            348899988 7 699999999999999999999999998865

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.12  E-value=7.8e-08  Score=58.36  Aligned_cols=39  Identities=8%  Similarity=0.025  Sum_probs=33.3

Q ss_pred             HHHHHhhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           88 GGHQNAHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        88 ~~H~r~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      ..|...|++++|    |.|.  .         |++.|.++..|+.|+++|++++
T Consensus         7 ~~~~~~H~~~k~----~~C~~~~---------C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKT----FECLFPG---------CTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTE----EECCCTT---------CCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHhccCCCCC----eECCCCC---------CCCccCCHHHHHHHHHHccCCC
Confidence            345567999999    7774  6         9999999999999999999875

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=2.7e-07  Score=60.15  Aligned_cols=64  Identities=11%  Similarity=-0.006  Sum_probs=48.3

Q ss_pred             chhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcc-cccCCCC----CCCcc
Q 040864           84 SQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLV-ARFGDAT----STGFD  158 (203)
Q Consensus        84 ~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~-~~f~~~~----~~~~~  158 (203)
                      ...|..|+++|.+++|    |.|..         |++.|.....|..       +++|.+..+ ..|....    +.+++
T Consensus         3 ~~~l~~H~~~h~~~~~----~~C~~---------C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H   62 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRS----QKCSK---------CGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNE   62 (73)
T ss_dssp             CCSCCCCCCCCCCCSE----EECSS---------SCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCC
T ss_pred             chhHHHHHHHhCCCCC----eeCCc---------ccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhh
Confidence            4567889999999999    88888         9999999998877       677888774 4455444    24455


Q ss_pred             cCCCcccccc
Q 040864          159 MIPWTPFMLE  168 (203)
Q Consensus       159 ~~~~~p~~~~  168 (203)
                       ++.+||.|.
T Consensus        63 -~~~~~~~C~   71 (73)
T 2ctu_A           63 -SGKKTSGPS   71 (73)
T ss_dssp             -CCCCCSSCC
T ss_pred             -cCCCCCCCC
Confidence             478888875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=3.3e-07  Score=61.10  Aligned_cols=43  Identities=19%  Similarity=0.418  Sum_probs=39.0

Q ss_pred             CchhcccCCCCC---CcceecCCCCccCCCchhHHHHH-HhhcCCCC
Q 040864           57 DSTDRRSKPASG---NKVFSCNFCMRKFYSSQALGGHQ-NAHKRERG   99 (203)
Q Consensus        57 ~~~~~H~r~Htg---ekp~~C~~Cgk~F~~~~~L~~H~-r~H~gekp   99 (203)
                      ..+..|+++|++   +++|.|.+|++.|.....|..|+ +.|.++++
T Consensus        21 ~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A           21 ASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             HHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             HHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            348999999986   89999999999999999999999 67888888

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.39  E-value=3.7e-07  Score=47.71  Aligned_cols=26  Identities=31%  Similarity=0.659  Sum_probs=24.3

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |||.|..|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999884

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.07  E-value=4.6e-08  Score=65.30  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=39.8

Q ss_pred             hHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-ccCCC-CCCCCCccc
Q 040864           86 ALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VDRSS-GALGPNLVA  147 (203)
Q Consensus        86 ~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H~~~-~~~~~~~~~  147 (203)
                      .|..|+++|++++|    |.|..         |++.|.....|..|++ +|.++ ++|.|..+.
T Consensus         2 s~~~H~~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~   52 (77)
T 2ct1_A            2 SSGSSGRTHSGEKP----YECYI---------CHARFTQSGTMKMHILQKHTENVAKFHCPHCD   52 (77)
T ss_dssp             CCCCCCCCCSCCCS----EECTT---------TCCEESCHHHHHHHHHHHSSSSCSSEECSSSS
T ss_pred             CCCccccccCCCCC----eECCC---------cCchhCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence            35678999999999    88888         9999999999999997 67664 556665533

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.06  E-value=5.5e-07  Score=59.04  Aligned_cols=40  Identities=30%  Similarity=0.675  Sum_probs=35.4

Q ss_pred             cCCchhcccCCCCCCcceecCC--CCccCCCchhHHHHHHhh
Q 040864           55 AGDSTDRRSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H   94 (203)
                      ....+..|+++|++++||.|.+  |++.|.....|..|+++|
T Consensus        31 ~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             SHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3344899999999999999975  999999999999999876

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=1.4e-07  Score=53.77  Aligned_cols=35  Identities=9%  Similarity=0.076  Sum_probs=31.5

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCC-CCCcccccccCCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRS-LGVQPHSLVDRSSG  139 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~-~~L~~H~r~H~~~~  139 (203)
                      ++|++++|    |.|..         |++.|.+. ..|..|+++|++++
T Consensus         2 ~~h~~~k~----~~C~~---------C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRA----MKCPY---------CDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CSCCCCCC----EECSS---------SSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCC----eECCC---------CChhhccCHHHHHHHHHhcCCCC
Confidence            46899999    88888         99999999 99999999998864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=4.1e-07  Score=51.40  Aligned_cols=34  Identities=15%  Similarity=0.031  Sum_probs=31.0

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .|++++|    |.|..         |++.|.+...|..|+++|++++
T Consensus         3 ~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLL----YDCHI---------CERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCC----EECSS---------SCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCC----eECCC---------CCCccCCHHHHHHHHHHhcCCC
Confidence            5788999    88988         9999999999999999998875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.02  E-value=1.4e-06  Score=57.42  Aligned_cols=34  Identities=6%  Similarity=-0.053  Sum_probs=30.9

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .|.++||    |.|..         |++.|.++..|+.|+++|+++.
T Consensus         7 ~~~~ekp----y~C~~---------CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            7 GLREAGI----LPCGL---------CGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             SCCCCCC----CCCTT---------TCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCccC----cCCCC---------CCCccCCHHHHHhhhhhhCCCc
Confidence            3678899    88888         9999999999999999999976

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.99  E-value=4e-07  Score=55.51  Aligned_cols=35  Identities=9%  Similarity=0.073  Sum_probs=29.6

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccc-ccCCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VDRSSGA  140 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H~~~~~  140 (203)
                      +|+++||    |.|..         |++.|.+...|+.|++ +|+++.+
T Consensus         1 ~Ht~~kp----~~C~~---------C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKP----YACDI---------CGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSC----EECTT---------TCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcC----EECCC---------cCcccCCHHHHHHHhhhhcCCCCC
Confidence            5899999    88988         9999999999999999 9998873

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=3.4e-07  Score=53.73  Aligned_cols=34  Identities=9%  Similarity=-0.038  Sum_probs=29.2

Q ss_pred             hhcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .++++||    |+|.  .         |+++|.+++.|+.|+++|+++.
T Consensus         3 ~~~gekp----~~C~~~~---------C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGIL----LKCPTDG---------CDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCC----EECSSSS---------CCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCC----CCCCCCC---------CCCccCCHHHHHHHHHhcCCCC
Confidence            3678999    6774  5         9999999999999999999863

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.98  E-value=6.2e-07  Score=50.00  Aligned_cols=30  Identities=17%  Similarity=0.077  Sum_probs=28.0

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      |.|..         |++.|.....|..|+++|++++||.
T Consensus         3 ~~C~~---------C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            3 FACPE---------CPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCSS---------SCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCC---------CCchhCCHHHHHHHHHHhCCCCCCC
Confidence            88888         9999999999999999999999874

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=4.5e-07  Score=51.08  Aligned_cols=34  Identities=9%  Similarity=0.062  Sum_probs=30.8

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .|++++|    |.|..         |++.|.+...|..|+++|++++
T Consensus         3 ~h~~~~~----~~C~~---------C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKT----HLCDM---------CGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSS----CBCTT---------TCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCC----eecCc---------CCCCcCchHHHHHHHHHhcCCC
Confidence            4788999    88888         9999999999999999999875

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=2.9e-07  Score=51.89  Aligned_cols=34  Identities=3%  Similarity=0.002  Sum_probs=31.1

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      +|++++|    |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKP----YKCPQ---------CSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCS----EECSS---------SSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCC----CCCCC---------CCcccCCHHHHHHHHHHccCCC
Confidence            5889999    88888         9999999999999999998874

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=2.8e-07  Score=52.09  Aligned_cols=34  Identities=6%  Similarity=0.028  Sum_probs=31.0

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .|++++|    |.|..         |++.|.+...|..|+++|++++
T Consensus         3 ~h~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKP----FKCSL---------CEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCS----EECSS---------SSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCC----ccCCC---------CCchhCCHHHHHHHHHHhccCC
Confidence            5889999    88888         9999999999999999998864

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.96  E-value=2.6e-06  Score=45.11  Aligned_cols=27  Identities=30%  Similarity=0.636  Sum_probs=25.2

Q ss_pred             cceecC--CCCccCCCchhHHHHHHhhcC
Q 040864           70 KVFSCN--FCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        70 kp~~C~--~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            589999  999999999999999999975

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.94  E-value=5.7e-08  Score=67.60  Aligned_cols=44  Identities=7%  Similarity=0.015  Sum_probs=39.0

Q ss_pred             HHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCccc
Q 040864           91 QNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVA  147 (203)
Q Consensus        91 ~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~  147 (203)
                      .++|++++|    |.|..         |++.|.+...|..|+++|++++||.|....
T Consensus        17 ~~~H~~~kp----y~C~~---------C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           17 NGPRLQNST----YQCKH---------CDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCSCCCCSC----EECSS---------SCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             ccccCCCCC----CcCCC---------CCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            457999999    88988         999999999999999999999998876543

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=2e-07  Score=53.33  Aligned_cols=34  Identities=3%  Similarity=-0.027  Sum_probs=30.8

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccc-ccccCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPH-SLVDRSS  138 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H-~r~H~~~  138 (203)
                      ++|++++|    |.|..         |++.|.++..|..| +++|+++
T Consensus         2 ~~H~~~k~----~~C~~---------C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHL----YYCSQ---------CHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCE----EECSS---------SSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcC----eECCC---------CCcccCCHHHHHHHHHHHccCc
Confidence            47899999    88988         99999999999999 9999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.87  E-value=4.9e-07  Score=51.67  Aligned_cols=33  Identities=9%  Similarity=0.037  Sum_probs=29.3

Q ss_pred             hcCCCCCccccccc--cccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           94 HKRERGAARRFQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        94 H~gekp~~c~~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |++++|    |.|.  .         |++.|.++..|..|+++|++++
T Consensus         3 ~~~~k~----~~C~~~~---------C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQ----HICHIQG---------CGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCC----EECCSTT---------CCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCC----CCCCCCC---------CCCccCCHHHHHHHHHhcCCCC
Confidence            788999    7776  6         9999999999999999998875

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.86  E-value=1.3e-07  Score=61.00  Aligned_cols=46  Identities=13%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             HHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCCCCCCCcccc
Q 040864           87 LGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALGPNLVAR  148 (203)
Q Consensus        87 L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~~  148 (203)
                      |..|+++|++++|    |.|..         |++.|.....|.   ++|++++||.|..+.+
T Consensus         2 L~~h~~~H~~~k~----~~C~~---------C~k~F~~~~~l~---~~H~~~k~~~C~~C~k   47 (62)
T 1vd4_A            2 IETDERDSTNRAS----FKCPV---------CSSTFTDLEANQ---LFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             CCCCSSSCCSSSE----EECSS---------SCCEEEHHHHHH---HEETTTTEEBCSSSCC
T ss_pred             hhhHHHHcCCCCC----ccCCC---------CCchhccHHHhH---hhcCCCCCEECCCCCC
Confidence            4567889999999    88888         999999887775   7888888777766443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=7.8e-07  Score=50.20  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=30.5

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      .|.+++|    |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~----~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKI----FTCEY---------CNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCC----EECTT---------TCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCC----EECCC---------CCceeCCHHHHHHHHHHhCCCC
Confidence            4778899    88888         9999999999999999998874

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=2.8e-06  Score=46.38  Aligned_cols=27  Identities=7%  Similarity=0.138  Sum_probs=24.6

Q ss_pred             cccc--cccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|.  .         |++.|.+...|..|+++|++++
T Consensus         4 ~~C~~~~---------C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            4 YSCDHPG---------CDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             BCCCCTT---------CCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCcCCC---------CCCccCCHHHHHHHHHHccCCC
Confidence            7787  7         9999999999999999999874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.96  E-value=3.5e-06  Score=44.97  Aligned_cols=27  Identities=7%  Similarity=-0.012  Sum_probs=24.8

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         4 ~~C~~---------C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            4 YVCIH---------CQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            88888         9999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.95  E-value=3.8e-06  Score=44.70  Aligned_cols=27  Identities=7%  Similarity=-0.081  Sum_probs=24.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            3 CQCVM---------CGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            78888         9999999999999999998864

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.73  E-value=3.6e-06  Score=45.64  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=20.8

Q ss_pred             CCCCCCCCCCCcccccccCCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |++.|.+...|..|+++|++++
T Consensus        10 C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A           10 CGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcccCCHhHHHHHHHHhcCCC
Confidence            9999999999999999999875

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=4.3e-06  Score=44.44  Aligned_cols=27  Identities=7%  Similarity=-0.061  Sum_probs=25.0

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         4 ~~C~~---------C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            4 YQCDY---------CGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             EECTT---------TCCEESCHHHHHHHHHTTCCCC
T ss_pred             ccCCC---------CCcccCCHHHHHHHHHHhccCC
Confidence            88988         9999999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.56  E-value=6e-06  Score=43.71  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=24.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            3 FACPE---------CPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             EECSS---------SSCEESCSHHHHHHHTGGGSCC
T ss_pred             ccCCC---------CCchhCCHHHHHHHHHHhcCCC
Confidence            88888         9999999999999999998864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.53  E-value=7.2e-06  Score=43.15  Aligned_cols=27  Identities=7%  Similarity=0.043  Sum_probs=24.8

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~~C~~---------C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            3 HKCPH---------CDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCSS---------CCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CcCCC---------CCcccCCHHHHHHHHHHhccCC
Confidence            78888         9999999999999999998864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.49  E-value=2e-05  Score=41.91  Aligned_cols=27  Identities=11%  Similarity=-0.038  Sum_probs=24.7

Q ss_pred             cccccccccccCCcCCCCCCCCCCCccc-ccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPH-SLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H-~r~H~~~~  139 (203)
                      |.|..         |++.|.+...|..| +++|++++
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            3 YACGL---------CNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             SBCTT---------TCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             cCCcc---------cCcccCChHHHHHHHHHHccCCC
Confidence            78888         99999999999999 89998874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.47  E-value=1.1e-05  Score=42.71  Aligned_cols=28  Identities=14%  Similarity=0.095  Sum_probs=25.5

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGA  140 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~  140 (203)
                      |.|..         |++.|.....|..|+++|+++++
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            3 YQCQY---------CEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCSS---------SSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             ccCCC---------CCCccCCHHHHHHHHHHHccCCC
Confidence            78888         99999999999999999998763

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.47  E-value=8.2e-06  Score=43.08  Aligned_cols=27  Identities=11%  Similarity=0.014  Sum_probs=24.8

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.+...|..|+++|++++
T Consensus         3 ~~C~~---------C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            3 FVCEV---------CTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CBCTT---------TCCBCSSHHHHHHHHHHHSCCC
T ss_pred             eECCC---------CCcccCCHHHHHHHHHHhcCCC
Confidence            78888         9999999999999999998864

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.57  E-value=1.9e-05  Score=40.84  Aligned_cols=24  Identities=13%  Similarity=0.058  Sum_probs=22.3

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |.|..         |++.|.+...|..|+++|+
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            3 YVCER---------CGKRFVQSSQLANHIRHHD   26 (26)
Confidence            88888         9999999999999999984

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.41  E-value=1e-05  Score=42.55  Aligned_cols=25  Identities=8%  Similarity=-0.032  Sum_probs=23.3

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|..         |++.|.....|..|+++|++
T Consensus         4 ~~C~~---------C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            4 YSCSV---------CGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             EECSS---------SCCEESCHHHHHHHHTTSCC
T ss_pred             ccCCC---------CCcccCCHHHHHHHHHhcCC
Confidence            88988         99999999999999999975

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.36  E-value=1.9e-05  Score=40.99  Aligned_cols=26  Identities=8%  Similarity=0.132  Sum_probs=23.2

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |.|..         |++.|.+...|..|+++|+++
T Consensus         2 ~~C~~---------C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            2 YKCGL---------CERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             CBCSS---------SCCBCSSHHHHHHHGGGTCC-
T ss_pred             ccCCC---------CCCcCCCHHHHHHHHHHcCCC
Confidence            77888         999999999999999999864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.31  E-value=7.1e-06  Score=43.27  Aligned_cols=27  Identities=7%  Similarity=0.011  Sum_probs=24.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|..|+++|++++
T Consensus         3 ~~C~~---------C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            3 LKCRE---------CGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             EECTT---------TSCEESCHHHHHHHHHHHHTCC
T ss_pred             ccCCC---------CCCccCChhHHHHHHHHhcCCC
Confidence            88888         9999999999999999998874

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.29  E-value=1.1e-05  Score=42.39  Aligned_cols=24  Identities=8%  Similarity=-0.078  Sum_probs=22.4

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |.|..         |++.|.+...|..|+++|+
T Consensus         4 ~~C~~---------C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            4 YRCPL---------CRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             EEETT---------TTEEESCHHHHHHHHTTCC
T ss_pred             cCCCC---------CCcccCCHHHHHHHHHhcC
Confidence            88888         9999999999999999985

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.26  E-value=1.2e-05  Score=41.98  Aligned_cols=24  Identities=8%  Similarity=-0.065  Sum_probs=22.4

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |.|..         |++.|.....|..|+++|+
T Consensus         4 ~~C~~---------C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            4 FSCSL---------CPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             EECSS---------SSCEESSHHHHHHHHHHCC
T ss_pred             ccCCC---------cChhhCCHHHHHHHHHHcc
Confidence            88988         9999999999999999985

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=96.98  E-value=4.3e-05  Score=44.01  Aligned_cols=26  Identities=8%  Similarity=-0.036  Sum_probs=23.9

Q ss_pred             hcCCCCCccccccccccccccCCcCCCCCCCCCCCcccc
Q 040864           94 HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHS  132 (203)
Q Consensus        94 H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~  132 (203)
                      ++||||    |.|..         |+|+|.+++.|++|+
T Consensus         3 ~~gekp----~~C~~---------CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPAR----FMCLP---------CGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCC----CEETT---------TTEECSCHHHHHHHH
T ss_pred             CCCccC----eECCC---------CCCccCCHhHccCcC
Confidence            578999    88888         999999999999998

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.98  E-value=3.2e-05  Score=40.64  Aligned_cols=25  Identities=8%  Similarity=0.072  Sum_probs=22.8

Q ss_pred             cccc--cccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNH--RMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~--~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|.  .         |++.|.....|..|+++|++
T Consensus         3 ~~C~~~~---------C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            3 YVCHFEN---------CGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             EEECSTT---------TCEEESSHHHHHHHHGGGTC
T ss_pred             CCCcCCc---------CcCccCCHHHHHHHHHHhCC
Confidence            7787  7         99999999999999999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.69  E-value=0.00014  Score=48.48  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=35.1

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      +..|+ .|.+++||.|..|++.|. ...|..|+++|.+++.
T Consensus        32 L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A           32 LKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREGS   70 (75)
T ss_dssp             HHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBSS
T ss_pred             HHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCcC
Confidence            88899 899999999999999987 4889999999998754

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.67  E-value=0.00028  Score=51.93  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=27.3

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHh
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      ..|+|+++|.|..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            457899999999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0018  Score=41.88  Aligned_cols=49  Identities=12%  Similarity=0.034  Sum_probs=37.4

Q ss_pred             CCCccCCCchhHHHHH-HhhcCCC------CCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           76 FCMRKFYSSQALGGHQ-NAHKRER------GAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        76 ~Cgk~F~~~~~L~~H~-r~H~gek------p~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      .|++.|.....|..|+ +.|.+.+      +    |.|.-     .+  |++.+.....|..|+++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~----~~C~W-----~~--C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEP----LACNW-----ED--CDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCC----EECCC-----SS--CCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCC----CEeeC-----CC--CcCCCCChHHHHhhcccc
Confidence            4999999999999998 5898776      5    45542     11  887777777888888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.44  E-value=0.039  Score=33.33  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             cceecCCCCccCCCchhHHHHHH
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      -+|.|+.|++.|.....|++||+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            56899999999999999999998

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.15  E-value=0.0065  Score=44.58  Aligned_cols=30  Identities=7%  Similarity=-0.124  Sum_probs=26.9

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      .|+|++|    |.|..         |++.|.+...|..|+++.
T Consensus        44 d~tGekp----fyC~~---------C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGL----HRCLA---------CARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGC----SEETT---------TTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcc----eEccc---------CcchhCCHHHHHHHHhhh
Confidence            5889999    88988         999999999999998864

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=91.38  E-value=0.038  Score=40.43  Aligned_cols=56  Identities=16%  Similarity=0.120  Sum_probs=39.6

Q ss_pred             CcceecCCCCccCCCchhHHHHH--HhhcCC-CC---------------C-----------ccccccccccccccCCcCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQ--NAHKRE-RG---------------A-----------ARRFQNHRMMMSSIGFLFN  119 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~--r~H~ge-kp---------------~-----------~c~~~C~~~~~~~~g~~C~  119 (203)
                      .+++.|.+|...|.+...+..|.  +.|... +.               +           ...|.|..         |+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~---------C~  100 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPV---------CN  100 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETT---------TT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCC---------CC
Confidence            35789999999999999999887  444211 00               0           01145666         99


Q ss_pred             CCCCCCCCCccccc
Q 040864          120 SVPLRSLGVQPHSL  133 (203)
Q Consensus       120 k~F~~~~~L~~H~r  133 (203)
                      +.|.....|..|..
T Consensus       101 ~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          101 MTFSSPVVAESHYI  114 (127)
T ss_dssp             EECSSHHHHHHHHT
T ss_pred             CEeCCHHHHHHHHC
Confidence            99999888888864

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=84.24  E-value=0.29  Score=33.43  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCCCCccc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARR  103 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~  103 (203)
                      ..-..|-+||+.|.   .|++|++.|.|..|.+++
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~hgltpeeYR   50 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHHSMTPEEYR   50 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTTCSCHHHHH
T ss_pred             CCceEecccchhhH---HHHHHHHHccCCCHHHHH
Confidence            34568999999998   488999998888885444

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=83.50  E-value=0.3  Score=36.88  Aligned_cols=67  Identities=10%  Similarity=0.023  Sum_probs=45.7

Q ss_pred             hhcccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           59 TDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +..|... =..++..|+.|+..+ ....|..|....-..++    ..|..         |+..|.. ..|..|..++.|+
T Consensus        99 l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~----~~C~~---------C~~~~~~-~~l~~H~~~~~~~  162 (170)
T 3hcs_A           99 LEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQ----VSCDN---------CAASMAF-EDKEIHDQNCPLA  162 (170)
T ss_dssp             HHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCE----EECTT---------TCCEEEG-GGHHHHHTTCCC-
T ss_pred             HHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCC----eECCC---------CCCccCH-HHHHhHHHhCcCh
Confidence            4556532 234678899999887 56668888876656666    56777         9887765 5689999999998


Q ss_pred             CCC
Q 040864          139 GAL  141 (203)
Q Consensus       139 ~~~  141 (203)
                      .++
T Consensus       163 ~~~  165 (170)
T 3hcs_A          163 LEH  165 (170)
T ss_dssp             ---
T ss_pred             hhh
Confidence            854

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=81.17  E-value=0.68  Score=25.90  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.6

Q ss_pred             ceecCCCCccCCCchhHHHHHH-hhc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN-AHK   95 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r-~H~   95 (203)
                      .|.|+.|.+.|.....|..|-. .|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            4999999999999999999964 454

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=80.78  E-value=0.67  Score=29.39  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=29.3

Q ss_pred             hhccc-CCCCCCc------ceecC--CCCccCCCchhHHHHHHhh
Q 040864           59 TDRRS-KPASGNK------VFSCN--FCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        59 ~~~H~-r~Htgek------p~~C~--~Cgk~F~~~~~L~~H~r~H   94 (203)
                      +..|+ +.|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus        19 l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A           19 LQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             HHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             HHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            67776 4676655      89997  8999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1njqa_	37	g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale c	3e-13

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.3 bits (144), Expect = 3e-13
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 69  NKVFSCNFCMRKFYSSQALGGHQNAHKRERGAAR 102
            + ++C+FC R+F S+QALGGH N H+R+R   R
Sbjct: 3   PRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.59
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.43
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.36
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.26
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.26
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.16
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.15
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.12
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.08
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.05
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.05
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.99
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.95
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.86
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.85
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.84
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.83
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.82
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.81
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.66
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.64
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.62
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.6
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.6
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.55
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.49
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.44
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.35
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.35
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.32
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.25
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.24
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.14
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.14
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.05
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.03
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.0
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.71
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.7
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.53
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.39
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.37
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.25
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.22
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.18
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.13
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.05
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.97
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.94
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.9
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.6
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.54
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.42
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.36
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.27
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.18
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.15
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.96
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.84
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.82
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.43
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.17
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.16
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.01
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.8
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.65
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.62
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.59
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.58
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.49
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.99
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.68
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	92.52
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.39
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.79
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	90.37
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	90.32
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.11
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.81
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	88.16
d1y0jb1	36	U-shaped transcription factor, different fingers {	86.29
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	84.65
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.5
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	82.51
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	82.29
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	81.94
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	80.18

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.1e-17  Score=101.21  Aligned_cols=53  Identities=15%  Similarity=0.233  Sum_probs=51.1

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCccccccc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      ||||.|. ||++|.....|..|+++|+|+||    |.|..         |+++|.+.+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp----y~C~~---------C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP----YGCGV---------CGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS----EECTT---------TSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC----CcCCC---------cCCEecCHHHHHHHHhcC
Confidence            6899995 99999999999999999999999    89999         999999999999999998

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-14  Score=83.40  Aligned_cols=37  Identities=24%  Similarity=0.487  Sum_probs=36.1

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      +|+++|+++|||.|.+|||+|.+.++|..|+++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6999999999999999999999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=77.14  Aligned_cols=33  Identities=36%  Similarity=0.535  Sum_probs=32.0

Q ss_pred             CCCCCcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           65 PASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        65 ~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      +|+|+|||+|.+||++|.+.+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            689999999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=74.99  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=32.5

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |+|+|+|||+|.+|+++|.+.++|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            6899999999999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1e-12  Score=75.94  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=34.0

Q ss_pred             cccCCCCCCcceecCCCCccCCCchhHHHHHHhhcC
Q 040864           61 RRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        61 ~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      .|.|+|+|+|||+|..|+++|.+.++|..|+++|.+
T Consensus         1 gh~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            388999999999999999999999999999999975

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-12  Score=73.81  Aligned_cols=35  Identities=29%  Similarity=0.490  Sum_probs=31.6

Q ss_pred             CCcceecCCCCccCCCchhHHHHHH-hhcCCCCCcc
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQN-AHKRERGAAR  102 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r-~H~gekp~~c  102 (203)
                      .+|||.|.+||++|.+.++|..|++ +|+|||||+|
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            4799999999999999999999975 8999999444

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6.3e-12  Score=71.43  Aligned_cols=33  Identities=24%  Similarity=0.577  Sum_probs=31.0

Q ss_pred             CCCCcceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           66 ASGNKVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        66 Htgekp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      |+|+|||+|.+|+|.|.+.++|..|+++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            699999999999999999999999999998753

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.15  E-value=7.2e-12  Score=68.29  Aligned_cols=29  Identities=31%  Similarity=0.706  Sum_probs=28.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      |||.|.+|+++|.+.++|..|+++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            69999999999999999999999999997

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=67.21  Aligned_cols=29  Identities=31%  Similarity=0.692  Sum_probs=28.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      |||.|.+|+|+|.+.++|..|+++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            69999999999999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.2e-11  Score=75.00  Aligned_cols=39  Identities=28%  Similarity=0.580  Sum_probs=36.2

Q ss_pred             hhcccCCCCCCcceecCC--CCccCCCchhHHHHHHhhcCCC
Q 040864           59 TDRRSKPASGNKVFSCNF--CMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        59 ~~~H~r~Htgekp~~C~~--Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +.+|++ |+++|||.|.+  |+++|...++|..|+++|+|||
T Consensus         7 l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            677774 99999999987  9999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.3e-11  Score=66.61  Aligned_cols=28  Identities=39%  Similarity=0.744  Sum_probs=27.2

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      ||||+|.+|+|+|.++++|..|+|+|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6999999999999999999999999997

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-11  Score=69.12  Aligned_cols=33  Identities=27%  Similarity=0.549  Sum_probs=29.8

Q ss_pred             CCCCCCcceecCCCCccCCCchhHHHHHH-hhcC
Q 040864           64 KPASGNKVFSCNFCMRKFYSSQALGGHQN-AHKR   96 (203)
Q Consensus        64 r~Htgekp~~C~~Cgk~F~~~~~L~~H~r-~H~g   96 (203)
                      |+|+|||||.|.+|++.|.+.++|..|++ .|+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            68999999999999999999999999975 5554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2e-12  Score=75.18  Aligned_cols=37  Identities=8%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             HHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           89 GHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        89 ~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +|+++|+++||    |.|..         |||+|.+++.|..|+++|+||
T Consensus         2 rH~~~Ht~ekp----y~C~~---------CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRR----YKCDE---------CGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCS----SBCSS---------SCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCC----EecCC---------CCceeeCHHHHHHhCccCCCC
Confidence            47889999999    88888         999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.8e-11  Score=68.59  Aligned_cols=33  Identities=30%  Similarity=0.503  Sum_probs=30.1

Q ss_pred             eecCC--CCccCCCchhHHHHHHhhcCCCCCcccc
Q 040864           72 FSCNF--CMRKFYSSQALGGHQNAHKRERGAARRF  104 (203)
Q Consensus        72 ~~C~~--Cgk~F~~~~~L~~H~r~H~gekp~~c~~  104 (203)
                      |.|..  |+++|.+..+|++|+++|+|+|||+|.|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            78987  9999999999999999999999976654

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.4e-11  Score=62.40  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=25.1

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |||+|.+|||+|.+.+.|..|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            79999999999999999999999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-11  Score=68.86  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             hhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           93 AHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        93 ~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      +|+|+||    |.|..         ||++|.+++.|..|+++|+||
T Consensus         1 IHTgekp----y~C~~---------Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKP----YGCVE---------CGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCC----EECSS---------SCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCC----eeCCC---------CCCEeCchHHhHhhccccCCC
Confidence            6999999    89989         999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.9e-10  Score=61.20  Aligned_cols=28  Identities=29%  Similarity=0.615  Sum_probs=27.0

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcCC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |||.|.+  |+|+|.+.++|..|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            7999999  999999999999999999997

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.8e-10  Score=71.42  Aligned_cols=40  Identities=28%  Similarity=0.502  Sum_probs=36.8

Q ss_pred             cCCchhcccCCCCCCcceecCCCCccCCCchhHHHHHHhh
Q 040864           55 AGDSTDRRSKPASGNKVFSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        55 ~~~~~~~H~r~Htgekp~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      ....+..|+++|++++||.|.+|+++|...+.|..|+++|
T Consensus        14 ~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          14 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             SHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3334899999999999999999999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.5e-10  Score=61.04  Aligned_cols=28  Identities=32%  Similarity=0.659  Sum_probs=26.8

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcCC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |||.|.+  |+|+|.+.++|..|+|+|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            7999988  999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.1e-11  Score=67.86  Aligned_cols=35  Identities=9%  Similarity=0.039  Sum_probs=32.6

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |+|+||||    |.|..         |+++|.+++.|+.|+++|+.+.
T Consensus         1 R~HTgekP----y~C~~---------C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKP----YACSH---------CDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCC----EECSS---------SSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCC----EECCC---------CCCCcCCHhHHHHhCcccCCCC
Confidence            58999999    89989         9999999999999999998765

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=6.9e-11  Score=68.04  Aligned_cols=35  Identities=14%  Similarity=-0.018  Sum_probs=32.5

Q ss_pred             HHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           90 HQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        90 H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|+|+||||    |+|..         |+++|.+++.|+.|+++|..
T Consensus         2 h~R~HTgeKP----y~C~~---------C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKP----FQCPD---------CDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSS----BCCTT---------TCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccC----eEeCC---------CCCEecCHHHHHHHHhcCcC
Confidence            6789999999    88888         99999999999999999964

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7e-10  Score=61.08  Aligned_cols=29  Identities=31%  Similarity=0.768  Sum_probs=27.2

Q ss_pred             cceecC--CCCccCCCchhHHHHHHhhcCCC
Q 040864           70 KVFSCN--FCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        70 kp~~C~--~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      |||.|+  .|+|+|.+.++|..|+++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            699996  59999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.8e-10  Score=64.09  Aligned_cols=36  Identities=11%  Similarity=-0.055  Sum_probs=32.4

Q ss_pred             CCCCCccccccccccccccCCcCCCCCCCCCCCccccc-ccCCCCCCCCC
Q 040864           96 RERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSL-VDRSSGALGPN  144 (203)
Q Consensus        96 gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r-~H~~~~~~~~~  144 (203)
                      .+||    |.|..         ||++|.+++.|+.|++ +|+++|||.|.
T Consensus         2 ~~Kp----y~C~~---------Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKP----YICQS---------CGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCC----EECSS---------SCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCC----ccCCC---------CCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4678    89999         9999999999999975 89999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=6.4e-10  Score=62.92  Aligned_cols=33  Identities=15%  Similarity=-0.002  Sum_probs=30.6

Q ss_pred             hcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           94 HKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        94 H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |+||||    |+|..         |++.|.+++.|++|+++|+.+.
T Consensus         2 ~TGekP----y~C~~---------C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRP----FVCRI---------CLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSC----EECSS---------SCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcc----ccCCC---------CCCcccChHHHHHHccccCCcC
Confidence            799999    89999         9999999999999999998754

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=3.1e-10  Score=68.64  Aligned_cols=43  Identities=9%  Similarity=0.082  Sum_probs=35.1

Q ss_pred             hhHHHHHHhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864           85 QALGGHQNAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus        85 ~~L~~H~r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      ..|..|+ .|+|+||    |.|..     .|  |+++|++++.|+.|+++|+|+|
T Consensus         5 ~~l~~h~-~h~gekp----y~C~~-----~~--C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYV-KEMPDKT----FECLF-----PG--CTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSC-EEETTTE----EECCC-----TT--CCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchh-hccCCCC----eECCc-----CC--CCccccCchHHHhhcccccCCC
Confidence            4566777 4999999    66632     12  9999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.62  E-value=1.4e-09  Score=59.01  Aligned_cols=27  Identities=11%  Similarity=0.014  Sum_probs=25.8

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |+++|.+++.|++|+++|+|||
T Consensus         3 ~~C~~---------C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           3 FVCEV---------CTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             BCCTT---------TCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCC---------CCCCCCCchHcccccCcccCCC
Confidence            88988         9999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2e-09  Score=58.31  Aligned_cols=27  Identities=15%  Similarity=0.082  Sum_probs=25.7

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |+++|.+++.|.+|+|+|+++|
T Consensus         3 y~C~~---------C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           3 FACPE---------CPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             SCCTT---------TTCCCSCSHHHHHHHHGGGCCC
T ss_pred             EECCc---------CCCeecchHHhhhhcCccCCcC
Confidence            88888         9999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=6.1e-09  Score=56.24  Aligned_cols=27  Identities=30%  Similarity=0.629  Sum_probs=25.8

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      |||.|.+  |+|+|.+.++|.+|+|+|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            7999988  99999999999999999987

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.8e-08  Score=55.58  Aligned_cols=29  Identities=24%  Similarity=0.682  Sum_probs=27.0

Q ss_pred             CcceecCC--CCccCCCchhHHHHHHhhcCC
Q 040864           69 NKVFSCNF--CMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        69 ekp~~C~~--Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      ||||.|.+  |+|+|.+.++|.+|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            68999998  999999999999999999863

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2e-08  Score=53.62  Aligned_cols=26  Identities=35%  Similarity=0.709  Sum_probs=24.8

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |||.|.+  |+|+|.+.++|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6999998  9999999999999999996

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.2e-09  Score=58.64  Aligned_cols=28  Identities=18%  Similarity=0.045  Sum_probs=26.1

Q ss_pred             CCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           97 ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        97 ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |||    |+|..         |+++|++++.|++|+|+|+|
T Consensus         1 EKP----y~C~~---------C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKP----FQCRI---------CMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCC----EECTT---------TCCEESCHHHHHHHHHHHHC
T ss_pred             CcC----ccCCC---------CcCEecccccccccCCCccC
Confidence            577    89999         99999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.4e-09  Score=62.04  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=28.9

Q ss_pred             HhhcCCCCCccccccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864           92 NAHKRERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus        92 r~H~gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |+|+||||    |.|..         |+++|+++.+|++|++.+++
T Consensus         1 R~HTgekP----~~C~~---------C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKP----YECYI---------CHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCS----EECTT---------TCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCC----EeCCC---------CcccccchHHHHHHcccccC
Confidence            57999999    88888         99999999999999865444

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-08  Score=56.24  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=21.4

Q ss_pred             CCCCCCCCCCCcccccccCCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |+++|+++++|++|+++|+|+|
T Consensus        10 C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_          10 CGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCcCChhHhhhhcCcccccC
Confidence            9999999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-08  Score=55.16  Aligned_cols=21  Identities=10%  Similarity=-0.021  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCcccccccCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |+++|.+++.|++|+|+|+||
T Consensus        10 Cgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3          10 CRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCceECChhHhhhhcCcCcCC
Confidence            999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.4e-09  Score=58.83  Aligned_cols=27  Identities=4%  Similarity=-0.162  Sum_probs=25.8

Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSSGALGPN  144 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~~~~~~~  144 (203)
                      |+++|.++..|++|+++|+|+|||.|.
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            999999999999999999999999874

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.1e-08  Score=48.32  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=24.6

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      |++|.+|+|.|+++..|+.|+|.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            67899999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.3e-08  Score=55.44  Aligned_cols=21  Identities=5%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCcccccccCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |+++|.+++.|+.|+|+|+||
T Consensus        10 Cgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCCEESCHHHHHHHHHHHHCC
T ss_pred             CCceECcHHHcCccccccCCC
Confidence            999999999999999999986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=2.2e-07  Score=48.13  Aligned_cols=27  Identities=37%  Similarity=0.671  Sum_probs=25.7

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhc
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      ||||.|.+||+.|..+...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999996

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=9.5e-09  Score=53.87  Aligned_cols=24  Identities=8%  Similarity=0.146  Sum_probs=22.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |+|..         |||+|++++.|.+|+|||+
T Consensus         3 y~C~e---------CgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           3 YKCLE---------CGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             EECSS---------SCCEESSHHHHHHHHHHHH
T ss_pred             ccCCC---------CcCeeccCcccccCccCCC
Confidence            89999         9999999999999999995

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.3e-07  Score=49.93  Aligned_cols=32  Identities=25%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCCCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRERGA  100 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp~  100 (203)
                      .|...|..|||.|....+|.+|...|++||||
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            35678999999999999999999999999994

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=1.4e-07  Score=51.84  Aligned_cols=31  Identities=13%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             CCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           97 ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        97 ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |||    |.|..     .|  |+++|+++++|++|+++|+..
T Consensus         1 ErP----~~C~~-----pg--C~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRP----YSCDH-----PG--CDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCS----BCCCC-----TT--CCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcC----eECcC-----CC--CCCeeCCHHHHHHHhhhccCC
Confidence            578    55544     44  999999999999999999864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2e-07  Score=49.65  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=18.4

Q ss_pred             CCCCCCCCCCCcccccccC
Q 040864          118 FNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~  136 (203)
                      |+|+|.++++|++|+|+|+
T Consensus        10 C~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4          10 CNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSSTTTTHHHHHHHC
T ss_pred             cCCcCCCHHHHHHHHhhcc
Confidence            9999999999999999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5e-07  Score=46.27  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=25.2

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      .+.|..|||+|.-++.|++|+.+|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999999986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.8e-08  Score=52.26  Aligned_cols=27  Identities=11%  Similarity=0.044  Sum_probs=23.2

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|..     .|  |+|+|.+++.|++|+|+|+|
T Consensus         3 ~~C~~-----~g--C~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           3 YACPV-----ES--CDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             EECCS-----TT--CCCEESSHHHHHHHTHHHHT
T ss_pred             eECCC-----CC--CCcEECchhHhhhhcCccCC
Confidence            66655     44  99999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=9.1e-07  Score=45.51  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=27.2

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      ++||+|..|..+-..++.|..|.|.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            68999999999999999999999999984

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.00  E-value=1.4e-06  Score=48.90  Aligned_cols=31  Identities=52%  Similarity=1.115  Sum_probs=27.9

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      .+.|.|.+|++.|.+..+|..|++.|..++.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchHH
Confidence            3579999999999999999999999987765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3e-06  Score=44.47  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=27.3

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      +|||.|++|+..|.++..+.-|.|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            68999999999999999999999999875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1e-05  Score=40.68  Aligned_cols=26  Identities=35%  Similarity=0.612  Sum_probs=24.9

Q ss_pred             ecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           73 SCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        73 ~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      +|+.|.|.|.++..|+.|.|.|+|||
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            69999999999999999999999986

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-05  Score=41.47  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             eecCCCCccCCCchhHHHHHHhhcCCC
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAHKRER   98 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H~gek   98 (203)
                      |.|.+||.....++-|+.|+|.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            789999999999999999999999985

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=3.8e-06  Score=42.09  Aligned_cols=25  Identities=8%  Similarity=-0.025  Sum_probs=22.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      .+|..         |+|.|+++..|+.|+|.|+|
T Consensus         2 hkc~~---------c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEV---------CGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTT---------TTBCCCCHHHHHHHGGGCCC
T ss_pred             Cccch---------hhhHhcchhHHHHHhhccCC
Confidence            56778         99999999999999999986

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.7e-06  Score=42.56  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCCcccccccCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |||+|..++.|++|+.+|+|+
T Consensus         8 cgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           8 CGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             TCCEESSHHHHHHHGGGTSCC
T ss_pred             HhHHHHHHHHHHHHhhcccCC
Confidence            999999999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.1e-05  Score=43.22  Aligned_cols=26  Identities=27%  Similarity=0.697  Sum_probs=23.9

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHH
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      +|-|||.|..|+|.|-+...+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            57899999999999999999999975

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.3e-05  Score=38.76  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=24.8

Q ss_pred             cceecCCCCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |||+|..|..+-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999995

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.25  E-value=9.7e-05  Score=38.01  Aligned_cols=28  Identities=36%  Similarity=0.576  Sum_probs=25.9

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcCC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |||.|.+  |.|.|....+|.+|..+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            6899986  999999999999999999986

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.1e-05  Score=39.14  Aligned_cols=28  Identities=29%  Similarity=0.638  Sum_probs=24.9

Q ss_pred             cceecCC--CCccCCCchhHHHHH-HhhcCC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQ-NAHKRE   97 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~-r~H~ge   97 (203)
                      |||.|.+  |.|+|+..+.-..|+ |+|..|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccCC
Confidence            6999998  999999999999998 888653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.18  E-value=6.2e-05  Score=37.19  Aligned_cols=24  Identities=42%  Similarity=0.887  Sum_probs=22.7

Q ss_pred             eecCCCCccCCCchhHHHHHHhhc
Q 040864           72 FSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |+|..|.+.|..++.|.+|+|+|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999985

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00012  Score=38.06  Aligned_cols=27  Identities=19%  Similarity=0.580  Sum_probs=24.1

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      |||.|.+  |+|++...++|+.|++.+.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6999998  99999999999999997544

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=1.6e-05  Score=42.59  Aligned_cols=30  Identities=7%  Similarity=0.017  Sum_probs=27.2

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSGALG  142 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~~~~  142 (203)
                      ..|..         |||.|.....|++|...|.+++||.
T Consensus         6 ~~ce~---------cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           6 VACEI---------CGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EEETT---------TTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhHHH---------HHHHHHHHHHHHhhhcccCCCCCCC
Confidence            46777         9999999999999999999999874

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.05  E-value=0.00017  Score=36.92  Aligned_cols=26  Identities=23%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhc
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~   95 (203)
                      .||+|+.  |++.|...+.|++|.++|.
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvha   29 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVHA   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhccC
Confidence            5899986  9999999999999999883

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=2e-05  Score=40.64  Aligned_cols=27  Identities=19%  Similarity=0.098  Sum_probs=24.5

Q ss_pred             CCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           97 ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        97 ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |||    |.|..         ||+.|.++...++|.++|.
T Consensus         1 EkP----f~C~~---------CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKP----FACDI---------CGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCC----EECTT---------TCCEESSHHHHHHHHGGGC
T ss_pred             CCC----cccch---------hhhhhhcchhhhhhhhhcc
Confidence            577    88999         9999999999999999984

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00031  Score=35.96  Aligned_cols=29  Identities=31%  Similarity=0.607  Sum_probs=27.1

Q ss_pred             CcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           69 NKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        69 ekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      +..|.|..|...|.+.-.|+.|+-.|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56799999999999999999999999986

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00043  Score=35.63  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=24.2

Q ss_pred             cceecCCCCccCCCchhHHHHHHh-hcCC
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNA-HKRE   97 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~-H~ge   97 (203)
                      |||.|.+|......+++|+.|.++ |..+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            699999999999999999999875 5444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00024  Score=37.28  Aligned_cols=27  Identities=7%  Similarity=0.043  Sum_probs=22.6

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccc-cccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~  137 (203)
                      |.|..     .|  |.|+|+.++.-.+|+ |+|..
T Consensus         3 Y~C~~-----~g--C~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           3 YMCEH-----EG--CSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             EECCS-----TT--CCCEESSSSTTHHHHHHTTCS
T ss_pred             ccccC-----CC--hhhhhcchhhhhhhccccccC
Confidence            66665     55  999999999999997 88864

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.54  E-value=0.00046  Score=36.17  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             ceecCCCCccCCCchhHHHHHH-hhcC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN-AHKR   96 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r-~H~g   96 (203)
                      ||.|.+|++.|.+..-|.+|+. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999974 5665

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.42  E-value=0.00015  Score=35.81  Aligned_cols=24  Identities=8%  Similarity=0.122  Sum_probs=21.9

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |+|..         |.++|..++.|.+|+|+|+
T Consensus         1 ykcgl---------cersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGL---------CERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSS---------SCCBCSSHHHHHHHGGGTC
T ss_pred             Ccccc---------hHHHHHHHHHHHHHHHhhc
Confidence            57888         9999999999999999996

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00013  Score=37.34  Aligned_cols=27  Identities=4%  Similarity=-0.033  Sum_probs=24.2

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         ||......+.|++|.|.|++++
T Consensus         2 YvC~~---------Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEE---------CGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTT---------TCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccc---------cCcccCCHHHHHHHHHHhcCCC
Confidence            66777         9999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00015  Score=37.02  Aligned_cols=29  Identities=17%  Similarity=0.095  Sum_probs=25.7

Q ss_pred             CCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           97 ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        97 ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |||    |+|+.         |..+-..++.|..|.|.|+|.
T Consensus         1 erp----fkcql---------csy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERP----FKCQI---------CPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCC----EECSS---------SSCEESSHHHHHHHHTTCCSC
T ss_pred             CCc----ceeee---------cccccCCchheEEeeecccCc
Confidence            467    89999         999989999999999999874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00012  Score=38.05  Aligned_cols=27  Identities=7%  Similarity=-0.001  Sum_probs=22.3

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRS  137 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~  137 (203)
                      |.|..     .|  |+|++...++|++|++.++|
T Consensus         3 Y~Ck~-----~g--C~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           3 YVCKL-----PG--CTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             EECCS-----TT--TCCEESSHHHHHHHHHHSCC
T ss_pred             eeccc-----CC--CCcccCCHHHHHHHHHhhCC
Confidence            66665     45  99999999999999997664

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=33.46  Aligned_cols=23  Identities=22%  Similarity=0.585  Sum_probs=21.7

Q ss_pred             ceecCCCCccCCCchhHHHHHHh
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      ||.|..|...|..+.+|..|+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999974

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=32.79  Aligned_cols=25  Identities=24%  Similarity=0.542  Sum_probs=22.3

Q ss_pred             cceecCCCCccCCCchhHHHHHHhh
Q 040864           70 KVFSCNFCMRKFYSSQALGGHQNAH   94 (203)
Q Consensus        70 kp~~C~~Cgk~F~~~~~L~~H~r~H   94 (203)
                      |||+|.+|..--.+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            6999999999889999999998743

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0028  Score=34.89  Aligned_cols=28  Identities=29%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CCcceecC--CCCccCCCchhHHHHHHhhc
Q 040864           68 GNKVFSCN--FCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        68 gekp~~C~--~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      .+|||.|.  -|+..|.....|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            48999995  59999999999999998774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.82  E-value=0.00018  Score=37.01  Aligned_cols=21  Identities=14%  Similarity=0.004  Sum_probs=19.6

Q ss_pred             CCCCCCCCCCCcccccccCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |.|.|..-..|.+|..+|+|+
T Consensus        10 c~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhccccCC
Confidence            999999999999999999885

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0034  Score=31.46  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=20.2

Q ss_pred             ceecCCCCccCCCchhHHHHHH
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      ||+|..|||.+.++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7999999999999999999864

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.0006  Score=34.05  Aligned_cols=22  Identities=9%  Similarity=-0.011  Sum_probs=20.9

Q ss_pred             CCCCCCCCCCCcccccccCCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|.|..+.-|+.|-|.|+|++
T Consensus         6 c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           6 CHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             TCCCCSSHHHHHHHHHHHSSCC
T ss_pred             hHHHHHHhHhhhhccccccCCC
Confidence            9999999999999999999986

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.00076  Score=36.39  Aligned_cols=21  Identities=5%  Similarity=-0.298  Sum_probs=18.7

Q ss_pred             CCCCCCCCCCCcccccccCCC
Q 040864          118 FNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       118 C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      =++.|.....|..|+|+|+||
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            567899999999999999986

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.01  E-value=0.00044  Score=35.31  Aligned_cols=25  Identities=12%  Similarity=0.101  Sum_probs=21.1

Q ss_pred             cccccccccccCCcCCCCCCCCCCCccccccc
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVD  135 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H  135 (203)
                      |+|..     .|  |++.|+..+.|++|.++|
T Consensus         4 y~c~h-----eg--cdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           4 YECPH-----EG--CDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             EECCS-----TT--CCCEESSHHHHHHHHHHH
T ss_pred             ccCCc-----cC--ccccccCHHHHhhhhhcc
Confidence            66654     55  999999999999999887

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0067  Score=30.52  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.9

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |-+|..|..+..++.+|+.|.|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5689999999999999999999984

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.00063  Score=34.34  Aligned_cols=24  Identities=8%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |+|..         |..+-..++.|++|+|||.
T Consensus         4 ~kck~---------cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           4 YKCKT---------CDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             EECSS---------SCCEESSHHHHHHHHHHSC
T ss_pred             ccccc---------ccchhcchhhHhhhhhccc
Confidence            88888         9999999999999999995

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0013  Score=36.83  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=21.3

Q ss_pred             CCCccccccC-CCCCCCCCCcccCC
Q 040864          160 IPWTPFMLED-TIDMFWPGSCHVDN  183 (203)
Q Consensus       160 ~~~~p~~~~~-~~~~~~~~s~~~~~  183 (203)
                      ||-+||.|.- ++-|.|.-||..|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            4779999999 99999999998873

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.00069  Score=35.23  Aligned_cols=29  Identities=14%  Similarity=-0.024  Sum_probs=25.5

Q ss_pred             CCCCccccccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864           97 ERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus        97 ekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |||    |.|..         |+..|.++..+.-|.|.|.|.
T Consensus         1 ekp----~~cpi---------c~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKP----YSCPV---------CGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCS----SEETT---------TTEECSCHHHHHHHHHHHSCC
T ss_pred             CCC----cccch---------HHHHhhccccceEeeecccCc
Confidence            577    88888         999999999999999999764

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.0083  Score=29.30  Aligned_cols=22  Identities=23%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             ceecCCCCccCCCchhHHHHHH
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      ||+|..|...|-++..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999974

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0081  Score=32.21  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=19.7

Q ss_pred             cCCCCccCCCchhHHHHHHhhcCC
Q 040864           74 CNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        74 C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |..=++.|.....|..|+|.||||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            334456799999999999999997

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.99  E-value=0.028  Score=28.94  Aligned_cols=28  Identities=29%  Similarity=0.591  Sum_probs=25.3

Q ss_pred             cceecCC--CCccCCCchhHHHHHHhhcCC
Q 040864           70 KVFSCNF--CMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        70 kp~~C~~--Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      |.|.|.+  |+-.|.....|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            5688986  999999999999999999986

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.033  Score=29.57  Aligned_cols=26  Identities=19%  Similarity=0.505  Sum_probs=22.7

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhcC
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHKR   96 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~g   96 (203)
                      .|.|..|||.|.+...+.+|--..+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48999999999999999999876655

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=92.52  E-value=0.033  Score=27.62  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             eecC--CCCccCCCchhHHHHHHhhc
Q 040864           72 FSCN--FCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        72 ~~C~--~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      |.|.  .|+|+|.....|+.|+-.|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            5665  49999999999999998886

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.035  Score=31.94  Aligned_cols=25  Identities=24%  Similarity=0.658  Sum_probs=22.7

Q ss_pred             ceecCCCCccCCCchhHHHHHHhhc
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~H~   95 (203)
                      .|.|-.|+|.|.....|+.|..-|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999988774

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.79  E-value=0.05  Score=26.50  Aligned_cols=22  Identities=23%  Similarity=0.794  Sum_probs=20.4

Q ss_pred             eecCCCCccCCCchhHHHHHHh
Q 040864           72 FSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        72 ~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      |.|+.|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7899999999999999999874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.37  E-value=0.0095  Score=32.80  Aligned_cols=27  Identities=11%  Similarity=0.005  Sum_probs=24.7

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSSG  139 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~~  139 (203)
                      |.|..         |++.|.....|--|++.|..++
T Consensus         6 ~~C~~---------C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           6 YTCSF---------CKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             EECTT---------TCCEESSHHHHHHHHHTTCCSC
T ss_pred             cCCCC---------CCCccCCcccccchHhhhcchH
Confidence            78888         9999999999999999998776

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=90.32  E-value=0.012  Score=30.64  Aligned_cols=26  Identities=12%  Similarity=0.028  Sum_probs=21.5

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccc-cccCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHS-LVDRSS  138 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~-r~H~~~  138 (203)
                      |.|..         |++.|+++.-|.+|+ ++|.|.
T Consensus         2 f~C~~---------C~R~FaRrDLlLRH~qKlH~g~   28 (31)
T d2adra2           2 YPCGL---------CNRAFTRRDLLIRHAQKIHSGN   28 (31)
T ss_dssp             EECTT---------TCCEESSHHHHHHHHTTTSCCS
T ss_pred             ccccc---------ccchhhHHHHHHHHHHHHhcCc
Confidence            78888         999999999999996 456553

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.08  Score=26.34  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             ceecCCCCccCCCchhHHHHHHh
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      .|.|+.|.....+++.|+.|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            38999999999999999999874

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.81  E-value=0.0097  Score=30.21  Aligned_cols=26  Identities=12%  Similarity=0.141  Sum_probs=23.3

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccCCC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDRSS  138 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~~~  138 (203)
                      |.|..         |...|.++..|..|+-.|+|+
T Consensus         5 ftcs~---------cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           5 FTCSV---------CQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             EECSS---------SCCEESSHHHHHHHHHHHSSS
T ss_pred             EEeHH---------HHHHHHHHHhheeeeecccCC
Confidence            67777         999999999999999999885

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.011  Score=32.39  Aligned_cols=30  Identities=10%  Similarity=0.015  Sum_probs=23.6

Q ss_pred             CCCCCccccccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864           96 RERGAARRFQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus        96 gekp~~c~~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      .+||    |.|..     .|  |+..|.....|..|...|.
T Consensus         3 ddkP----F~C~~-----pG--C~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKP----FLCTA-----PG--CGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCC----EECCC-----TT--TCCEESSHHHHHHHHHHHH
T ss_pred             CCCc----eecCC-----CC--ccccccchHHHHHhhhhhe
Confidence            3788    66655     55  9999999999999987763

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.29  E-value=0.14  Score=26.75  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             ceecCCCCccCCCchhHHHHHH
Q 040864           71 VFSCNFCMRKFYSSQALGGHQN   92 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r   92 (203)
                      .|.|.-||-.|++.+.|..|+.
T Consensus         8 rf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ceeccccceeecChhHHHhhhh
Confidence            4899999999999999999875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.65  E-value=0.41  Score=27.23  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             CCCcceecCCCCccCCCchhHHHHHHhhcCCCC
Q 040864           67 SGNKVFSCNFCMRKFYSSQALGGHQNAHKRERG   99 (203)
Q Consensus        67 tgekp~~C~~Cgk~F~~~~~L~~H~r~H~gekp   99 (203)
                      ..+.|-.|+.|+-...++.+|.+|.-.-.-.||
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            457899999999999999999999875433343

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.23  Score=24.71  Aligned_cols=23  Identities=26%  Similarity=0.649  Sum_probs=19.2

Q ss_pred             ecCC--CCccCCCchhHHHHHHhhc
Q 040864           73 SCNF--CMRKFYSSQALGGHQNAHK   95 (203)
Q Consensus        73 ~C~~--Cgk~F~~~~~L~~H~r~H~   95 (203)
                      .|+.  |.|.|...++++.|+-+|.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGGS
T ss_pred             cCCcccHHHHhhchHHHHHHhhccC
Confidence            3554  9999999999999998773

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.51  E-value=0.25  Score=26.11  Aligned_cols=26  Identities=19%  Similarity=0.530  Sum_probs=22.5

Q ss_pred             CCcceecCCCCccCCCchhHHHHHHh
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      |+..|.|..|.+.+...+++-+|-.+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            45679999999999999999999653

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.29  E-value=0.065  Score=27.19  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=20.5

Q ss_pred             cccccccccccCCcCCCCCCCCCCCcccccccC
Q 040864          104 FQNHRMMMSSIGFLFNSVPLRSLGVQPHSLVDR  136 (203)
Q Consensus       104 ~~C~~~~~~~~g~~C~k~F~~~~~L~~H~r~H~  136 (203)
                      |+|+.         |......+++|+.|.++-+
T Consensus         3 y~cqy---------c~yrsadssnlkthiktkh   26 (30)
T d1klra_           3 YQCQY---------CEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCSS---------SSCCCSCSHHHHHHHHHHT
T ss_pred             ccccc---------cccccccchhhhhhhhccc
Confidence            88888         9988899999999988643

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=0.63  Score=23.30  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=19.9

Q ss_pred             ceecCCCCccCCCchhHHHHHHh
Q 040864           71 VFSCNFCMRKFYSSQALGGHQNA   93 (203)
Q Consensus        71 p~~C~~Cgk~F~~~~~L~~H~r~   93 (203)
                      -|.|..|||...+...++-|...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999999999988754

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=0.37  Score=29.38  Aligned_cols=30  Identities=33%  Similarity=0.636  Sum_probs=26.4

Q ss_pred             CCcceecCCCCccCCCchhHHHHHHhhcCC
Q 040864           68 GNKVFSCNFCMRKFYSSQALGGHQNAHKRE   97 (203)
Q Consensus        68 gekp~~C~~Cgk~F~~~~~L~~H~r~H~ge   97 (203)
                      +...|.|.+|.-.|.....|..|...|..+
T Consensus        15 ~s~~yQC~HCd~K~~s~~el~~hl~~hnee   44 (75)
T d1x6fa1          15 QNSTYQCKHCDSKLQSTAELTSHLNIHNEE   44 (75)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHH
T ss_pred             CCceeeechhHHHHhhHHHHHHHHHhccHH
Confidence            345799999999999999999999999764