BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040869
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 109 bits (272), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 3/130 (2%)
Query: 5 QDQGAKELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQP 64
++ E+ + QA LYK M++ + SMSLK +IE+ I +IIH+HG+ ITLS LVS L I
Sbjct: 6 NNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPS 65
Query: 65 TKTTGLFRLMRLLVHSSCFN---KTKVNGQEEAYGLTAASTLLIKDKPYCMSPTVSAFVD 121
TK + RLMR L H+ F ++ +EEAY LT AS LL+K C++P V +D
Sbjct: 66 TKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLD 125
Query: 122 PLFVAPFQSL 131
P F +L
Sbjct: 126 PTLSTSFHNL 135
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGL 70
EL Q LYK +++ +SSM+LK A+ELGIAD IH+HG+ +TLSEL S+L + P+K L
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 71 FRLMRLLVHSSCFNKTKVNGQEE------AYGLTAASTLLIKDKPYCMSPTVSAFVDP 122
R +RLL H+ F KT V G+E AY LT S LLI KP C+S V + P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 123
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGL 70
EL Q LYK +++ +SSM+LK A+ELGIAD IH+HG+ +TLSEL S+L + P+K L
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 71 FRLMRLLVHSSCFNKTKVNGQEE------AYGLTAASTLLIKDKPYCMSPTVSAFVDP 122
R +RLL H+ F KT V G+E AY LT S LLI KP C+S V + P
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 122
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGL 70
EL Q LYK +++ +SSM+LK A+ELGIAD IH+HG+ +TLSEL S+L + P+K L
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 71 FRLMRLLVHSSCFNKTKVNGQEE------AYGLTAASTLLIKDKPYCMSPTVSAFVDP 122
R +RLL H+ F KT V G+E AY LT S LLI KP C+S V + P
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 119
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGL 70
E+ + QA LYK +++ + SMSLK A+E+ I +II +HG+ I+LS LVS L + +K +
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 71 FRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQS 130
RLMR L H+ F + +EE+Y LT AS LL++ C++P V +DP +
Sbjct: 72 RRLMRYLAHNGFFE--IITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHE 129
Query: 131 L 131
L
Sbjct: 130 L 130
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
Query: 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGL 70
E+ + QA LYK +++ + S SLK A+E I +II +HG+ I+LS LVS L + +K +
Sbjct: 12 EIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 71 FRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQS 130
RL R L H+ F + +EE+Y LT AS LL++ C++P V +DP +
Sbjct: 72 RRLXRYLAHNGFFE--IITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHE 129
Query: 131 L 131
L
Sbjct: 130 L 130
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 16 QAQLYKLMFSHLS--SMSLKCAIELGIADIIHSHGRAITLS--ELVSAL-DIQPTKTTGL 70
+A L+ + + S M LK A+EL + +II G +S E+ S L P L
Sbjct: 18 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 77
Query: 71 FRLMRLL---VHSSCFNKTKVNGQ-EEAYGLTAASTLLIKDK 108
R++RLL + +C +T+ +G+ + YGL + L+K++
Sbjct: 78 DRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
>pdb|3NFH|A Chain A, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49 (P4)
pdb|3NFH|B Chain B, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49 (P4)
Length = 246
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL-- 97
+A I+H + ++ L L+++P+K LFR++ +V + Q EA+G+
Sbjct: 180 LAIIMHLDNFIVEITPLAHELNLKPSKVVSLFRVLGAIVKGATV------AQAEAFGIPK 233
Query: 98 -TAAS 101
TAAS
Sbjct: 234 STAAS 238
>pdb|3NFI|A Chain A, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|B Chain B, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|C Chain C, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|D Chain D, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
pdb|3NFI|E Chain E, Crystal Structure Of Tandem Winged Helix Domain Of Rna
Polymerase I Subunit A49
Length = 237
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL-- 97
+A I H + ++ L L+++P+K LFR++ +V + Q EA+G+
Sbjct: 167 LAIIXHLDNFIVEITPLAHELNLKPSKVVSLFRVLGAIVKGATV------AQAEAFGIPK 220
Query: 98 -TAAS 101
TAAS
Sbjct: 221 STAAS 225
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 21 KLMFSHLSSMSLKCAIELGIADI-IHSHGRAITLSELVSALD--IQPTKTTGLFRLMRLL 77
+L S + M+LK AIELG+ +I + + G+++T +E+ + L P + R++RLL
Sbjct: 26 QLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLL 85
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 43 IIHSHGRAITLSELVSALD 61
IIHS G + TL+ELV ++D
Sbjct: 41 IIHSKGASTTLTELVQSID 59
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 43 IIHSHGRAITLSELVSALD 61
IIHS G + TL+ELV ++D
Sbjct: 39 IIHSKGASTTLTELVQSID 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,298,140
Number of Sequences: 62578
Number of extensions: 104341
Number of successful extensions: 167
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 13
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)