Query 040869
Match_columns 131
No_of_seqs 210 out of 1015
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 20:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 99.8 5.1E-21 1.7E-25 149.7 10.0 124 8-131 13-144 (364)
2 1fp2_A Isoflavone O-methyltran 99.8 4E-21 1.4E-25 149.1 7.7 125 5-131 6-130 (352)
3 1zg3_A Isoflavanone 4'-O-methy 99.8 1E-20 3.4E-25 147.1 7.5 122 10-131 5-132 (358)
4 3lst_A CALO1 methyltransferase 99.8 1.3E-20 4.4E-25 146.1 6.9 111 11-131 18-128 (348)
5 4a6d_A Hydroxyindole O-methylt 99.8 4.8E-20 1.6E-24 143.7 8.3 113 14-131 7-120 (353)
6 2ip2_A Probable phenazine-spec 99.8 2.9E-19 9.9E-24 137.2 10.4 107 14-131 7-113 (334)
7 1fp1_D Isoliquiritigenin 2'-O- 99.8 1.4E-19 4.8E-24 141.4 8.7 123 9-131 16-151 (372)
8 3gwz_A MMCR; methyltransferase 99.8 9.1E-20 3.1E-24 142.6 7.4 112 11-131 34-146 (369)
9 3reo_A (ISO)eugenol O-methyltr 99.8 1.5E-19 5E-24 141.5 8.5 124 8-131 14-146 (368)
10 3i53_A O-methyltransferase; CO 99.8 6E-20 2.1E-24 141.2 4.6 107 16-131 6-113 (332)
11 3dp7_A SAM-dependent methyltra 99.8 2.6E-19 8.8E-24 139.7 5.4 112 9-131 9-120 (363)
12 2r3s_A Uncharacterized protein 99.8 1.1E-18 3.9E-23 133.5 7.9 105 17-131 8-113 (335)
13 1x19_A CRTF-related protein; m 99.8 1.9E-18 6.4E-23 134.2 8.3 114 7-131 22-140 (359)
14 1qzz_A RDMB, aclacinomycin-10- 99.7 2.3E-18 7.9E-23 133.9 7.4 109 14-131 15-126 (374)
15 3mcz_A O-methyltransferase; ad 99.7 4E-18 1.4E-22 131.6 7.3 106 12-131 22-128 (352)
16 1tw3_A COMT, carminomycin 4-O- 99.7 7.7E-18 2.6E-22 130.4 8.5 107 16-131 20-127 (360)
17 2heo_A Z-DNA binding protein 1 98.2 8.5E-07 2.9E-11 53.3 3.6 55 37-98 12-66 (67)
18 3mq0_A Transcriptional repress 98.2 8.7E-07 3E-11 66.7 4.1 60 38-104 33-92 (275)
19 1y0u_A Arsenical resistance op 98.0 4.3E-05 1.5E-09 48.3 7.7 63 30-103 26-88 (96)
20 1mkm_A ICLR transcriptional re 98.0 9.1E-06 3.1E-10 60.1 5.1 58 38-102 11-68 (249)
21 3r4k_A Transcriptional regulat 98.0 1.7E-06 5.7E-11 64.6 1.0 61 38-104 9-69 (260)
22 2xrn_A HTH-type transcriptiona 97.9 6.4E-06 2.2E-10 60.7 4.1 61 38-104 9-69 (241)
23 2fu4_A Ferric uptake regulatio 97.9 7E-06 2.4E-10 50.6 3.0 49 36-87 18-72 (83)
24 3b73_A PHIH1 repressor-like pr 97.8 1.7E-05 5.7E-10 52.3 3.8 62 36-105 14-77 (111)
25 2o0y_A Transcriptional regulat 97.8 8.2E-06 2.8E-10 60.8 2.3 58 38-102 26-83 (260)
26 2g7u_A Transcriptional regulat 97.8 1.2E-05 4.3E-10 59.6 2.9 60 38-105 17-76 (257)
27 2ia2_A Putative transcriptiona 97.7 1.2E-05 4.1E-10 60.0 2.3 59 38-104 24-82 (265)
28 1u2w_A CADC repressor, cadmium 97.6 6.2E-05 2.1E-09 49.8 4.5 68 28-100 35-102 (122)
29 3cuo_A Uncharacterized HTH-typ 97.6 5E-05 1.7E-09 47.7 3.8 65 31-100 20-84 (99)
30 2oqg_A Possible transcriptiona 97.6 5.8E-05 2E-09 48.7 4.2 65 32-102 18-82 (114)
31 3pqk_A Biofilm growth-associat 97.6 0.00011 3.8E-09 46.8 5.2 64 30-99 18-81 (102)
32 3jth_A Transcription activator 97.5 6E-05 2.1E-09 47.6 3.3 65 30-100 18-82 (98)
33 3f6o_A Probable transcriptiona 97.5 8.8E-05 3E-09 48.7 3.9 67 29-101 12-78 (118)
34 2o03_A Probable zinc uptake re 97.5 0.00015 5.1E-09 48.6 5.1 61 34-97 10-75 (131)
35 2y75_A HTH-type transcriptiona 97.5 0.00014 4.7E-09 48.4 4.8 48 48-100 24-71 (129)
36 2fe3_A Peroxide operon regulat 97.5 0.00021 7.3E-09 48.7 5.6 62 34-98 21-87 (145)
37 2kko_A Possible transcriptiona 97.4 0.00015 5E-09 47.0 4.2 52 31-87 21-72 (108)
38 1r1u_A CZRA, repressor protein 97.4 0.00014 4.8E-09 46.8 3.9 52 31-87 22-73 (106)
39 1on2_A Transcriptional regulat 97.4 0.00016 5.3E-09 48.5 4.1 51 48-105 20-70 (142)
40 2jt1_A PEFI protein; solution 97.4 0.00016 5.4E-09 44.6 3.7 46 39-87 8-58 (77)
41 1ub9_A Hypothetical protein PH 97.4 8.9E-05 3E-09 46.5 2.6 70 30-103 11-82 (100)
42 2jsc_A Transcriptional regulat 97.4 0.00014 4.8E-09 47.8 3.7 65 30-100 16-80 (118)
43 2htj_A P fimbrial regulatory p 97.4 0.00033 1.1E-08 42.9 5.0 45 38-86 3-47 (81)
44 2wte_A CSA3; antiviral protein 97.3 0.00016 5.6E-09 53.6 3.7 63 36-105 153-215 (244)
45 3r0a_A Putative transcriptiona 97.3 0.00019 6.6E-09 47.5 3.6 49 36-87 27-76 (123)
46 3ech_A MEXR, multidrug resista 97.3 0.001 3.6E-08 44.1 7.0 68 35-106 37-106 (142)
47 1xmk_A Double-stranded RNA-spe 97.2 0.00033 1.1E-08 43.4 4.0 61 36-102 12-73 (79)
48 1mzb_A Ferric uptake regulatio 97.2 0.00039 1.3E-08 46.8 4.7 60 35-97 18-83 (136)
49 2xig_A Ferric uptake regulatio 97.2 0.00045 1.5E-08 47.4 5.0 61 34-97 26-91 (150)
50 3f6v_A Possible transcriptiona 97.2 0.00019 6.7E-09 49.4 3.1 69 28-102 51-119 (151)
51 2hzt_A Putative HTH-type trans 97.2 0.00047 1.6E-08 44.4 4.6 62 39-105 18-82 (107)
52 1xn7_A Hypothetical protein YH 97.2 0.00054 1.8E-08 42.2 4.6 44 39-86 6-49 (78)
53 3mwm_A ZUR, putative metal upt 97.2 0.00047 1.6E-08 46.7 4.7 62 34-98 13-79 (139)
54 3fm5_A Transcriptional regulat 97.2 0.00028 9.5E-09 47.4 3.4 70 35-107 39-110 (150)
55 2x4h_A Hypothetical protein SS 97.1 0.00041 1.4E-08 46.2 4.0 51 47-105 28-78 (139)
56 1qbj_A Protein (double-strande 97.1 0.00079 2.7E-08 41.8 4.9 62 36-102 11-74 (81)
57 1qgp_A Protein (double strande 97.1 0.00052 1.8E-08 42.1 4.0 59 36-99 15-75 (77)
58 3df8_A Possible HXLR family tr 97.1 0.00048 1.6E-08 44.8 3.8 74 17-106 18-94 (111)
59 2k02_A Ferrous iron transport 97.1 0.00054 1.9E-08 43.1 3.9 45 39-87 6-50 (87)
60 2pg4_A Uncharacterized protein 97.1 0.00031 1E-08 44.1 2.7 64 40-106 20-84 (95)
61 1r1t_A Transcriptional repress 97.1 0.00059 2E-08 45.2 4.1 52 31-87 42-93 (122)
62 2gxg_A 146AA long hypothetical 97.0 0.0046 1.6E-07 40.8 8.3 66 36-106 38-105 (146)
63 1tbx_A ORF F-93, hypothetical 97.0 0.00051 1.8E-08 43.2 3.3 66 37-107 10-79 (99)
64 2hr3_A Probable transcriptiona 97.0 0.00096 3.3E-08 44.3 4.8 69 35-106 35-105 (147)
65 2lnb_A Z-DNA-binding protein 1 97.0 0.00073 2.5E-08 41.5 3.7 55 37-98 21-75 (80)
66 1r7j_A Conserved hypothetical 97.0 0.00077 2.6E-08 42.9 3.9 56 40-106 13-68 (95)
67 3bja_A Transcriptional regulat 97.0 0.00067 2.3E-08 44.5 3.8 67 36-106 34-102 (139)
68 3eco_A MEPR; mutlidrug efflux 97.0 0.0006 2E-08 45.0 3.5 69 36-107 32-103 (139)
69 1s3j_A YUSO protein; structura 97.0 0.0032 1.1E-07 42.0 7.3 66 37-106 39-106 (155)
70 3bro_A Transcriptional regulat 97.0 0.001 3.6E-08 43.8 4.7 67 37-106 36-105 (141)
71 3kp7_A Transcriptional regulat 97.0 0.0053 1.8E-07 41.0 8.3 66 37-107 40-109 (151)
72 3boq_A Transcriptional regulat 97.0 0.0039 1.3E-07 41.9 7.7 67 37-106 49-117 (160)
73 3lwf_A LIN1550 protein, putati 97.0 0.0013 4.3E-08 45.8 5.2 61 48-119 42-102 (159)
74 1z7u_A Hypothetical protein EF 97.0 0.00064 2.2E-08 44.1 3.5 61 40-105 27-90 (112)
75 4a5n_A Uncharacterized HTH-typ 97.0 0.00099 3.4E-08 44.9 4.5 78 15-106 15-95 (131)
76 3bpv_A Transcriptional regulat 97.0 0.00078 2.7E-08 44.2 4.0 66 37-106 31-98 (138)
77 1oyi_A Double-stranded RNA-bin 96.9 0.00086 2.9E-08 41.8 3.8 59 35-100 17-75 (82)
78 2qvo_A Uncharacterized protein 96.9 0.00025 8.4E-09 44.7 1.3 53 50-106 30-82 (95)
79 2h09_A Transcriptional regulat 96.9 0.0012 4.1E-08 44.7 4.8 58 41-106 46-103 (155)
80 1ylf_A RRF2 family protein; st 96.9 0.00087 3E-08 45.7 3.9 60 30-100 15-74 (149)
81 2fbh_A Transcriptional regulat 96.9 0.0012 4.1E-08 43.6 4.4 67 37-106 39-107 (146)
82 3deu_A Transcriptional regulat 96.9 0.00083 2.8E-08 46.2 3.6 68 36-106 54-123 (166)
83 2nnn_A Probable transcriptiona 96.9 0.00072 2.4E-08 44.4 3.2 67 36-106 39-107 (140)
84 2qww_A Transcriptional regulat 96.9 0.01 3.4E-07 39.6 9.1 67 36-106 42-112 (154)
85 2lkp_A Transcriptional regulat 96.9 0.0011 3.8E-08 43.1 4.1 52 31-87 28-79 (119)
86 3k0l_A Repressor protein; heli 96.9 0.0016 5.3E-08 44.3 5.0 66 37-106 48-115 (162)
87 3nrv_A Putative transcriptiona 96.9 0.00091 3.1E-08 44.5 3.7 67 36-106 41-109 (148)
88 2fa5_A Transcriptional regulat 96.9 0.001 3.4E-08 45.0 4.0 66 37-106 51-118 (162)
89 1ku9_A Hypothetical protein MJ 96.8 0.0014 4.7E-08 43.4 4.6 58 39-99 30-87 (152)
90 3t8r_A Staphylococcus aureus C 96.8 0.0015 5.1E-08 44.4 4.7 47 48-99 26-72 (143)
91 3cdh_A Transcriptional regulat 96.8 0.0011 3.8E-08 44.5 4.0 66 37-106 45-112 (155)
92 2w57_A Ferric uptake regulatio 96.8 0.00061 2.1E-08 46.7 2.7 60 35-97 17-82 (150)
93 2f2e_A PA1607; transcription f 96.8 0.0018 6.1E-08 44.0 5.0 54 49-105 36-90 (146)
94 3bdd_A Regulatory protein MARR 96.8 0.0016 5.4E-08 42.8 4.6 66 36-105 32-99 (142)
95 2a61_A Transcriptional regulat 96.8 0.00078 2.7E-08 44.6 3.1 67 36-106 34-102 (145)
96 3tgn_A ADC operon repressor AD 96.8 0.0013 4.6E-08 43.5 4.3 67 35-106 38-106 (146)
97 3f3x_A Transcriptional regulat 96.8 0.0092 3.1E-07 39.4 8.4 66 36-106 38-105 (144)
98 3oop_A LIN2960 protein; protei 96.8 0.00073 2.5E-08 44.8 2.9 69 35-107 37-107 (143)
99 2fsw_A PG_0823 protein; alpha- 96.8 0.00097 3.3E-08 42.8 3.2 76 16-105 15-93 (107)
100 3bj6_A Transcriptional regulat 96.8 0.0082 2.8E-07 39.9 8.0 66 37-106 42-109 (152)
101 2zkz_A Transcriptional repress 96.8 0.00091 3.1E-08 42.4 3.0 53 30-87 22-74 (99)
102 1xd7_A YWNA; structural genomi 96.7 0.0019 6.6E-08 43.8 4.7 45 49-100 23-67 (145)
103 1sfx_A Conserved hypothetical 96.7 0.0014 4.8E-08 41.1 3.8 48 36-87 21-68 (109)
104 3g3z_A NMB1585, transcriptiona 96.7 0.0011 3.8E-08 44.0 3.4 67 36-106 32-100 (145)
105 2nyx_A Probable transcriptiona 96.7 0.0086 2.9E-07 40.9 8.0 67 36-106 46-114 (168)
106 1bja_A Transcription regulator 96.7 0.0018 6.1E-08 41.4 4.0 63 36-107 17-80 (95)
107 3jw4_A Transcriptional regulat 96.7 0.001 3.5E-08 44.4 3.0 67 37-106 43-112 (148)
108 3e6m_A MARR family transcripti 96.7 0.0062 2.1E-07 41.2 6.9 67 37-107 55-123 (161)
109 3cjn_A Transcriptional regulat 96.7 0.0011 3.9E-08 44.8 3.2 67 36-106 53-121 (162)
110 2obp_A Putative DNA-binding pr 96.7 0.0017 5.9E-08 41.5 3.8 55 48-105 34-88 (96)
111 2pex_A Transcriptional regulat 96.7 0.0016 5.3E-08 43.7 3.8 68 36-107 48-117 (153)
112 2d1h_A ST1889, 109AA long hypo 96.7 0.0013 4.4E-08 41.4 3.1 37 48-87 34-70 (109)
113 1q1h_A TFE, transcription fact 96.7 0.0012 4.2E-08 42.3 3.1 48 36-86 19-66 (110)
114 4aik_A Transcriptional regulat 96.7 0.0028 9.5E-08 43.0 5.0 68 37-107 33-102 (151)
115 1jgs_A Multiple antibiotic res 96.6 0.0015 5.1E-08 42.9 3.5 66 37-106 36-103 (138)
116 3hsr_A HTH-type transcriptiona 96.6 0.0046 1.6E-07 40.9 5.9 66 38-107 39-106 (140)
117 1yyv_A Putative transcriptiona 96.6 0.0012 4E-08 44.3 2.8 76 16-105 25-103 (131)
118 2eth_A Transcriptional regulat 96.6 0.0018 6.2E-08 43.5 3.8 68 35-106 44-113 (154)
119 3k69_A Putative transcription 96.6 0.0042 1.4E-07 43.1 5.7 48 48-100 26-73 (162)
120 2rdp_A Putative transcriptiona 96.6 0.0015 5.3E-08 43.4 3.3 66 37-106 44-111 (150)
121 1lj9_A Transcriptional regulat 96.6 0.0016 5.4E-08 43.1 3.4 66 37-106 31-98 (144)
122 2bv6_A MGRA, HTH-type transcri 96.6 0.0016 5.5E-08 43.0 3.3 67 36-106 38-106 (142)
123 1p6r_A Penicillinase repressor 96.6 0.0013 4.6E-08 40.0 2.6 48 36-87 10-61 (82)
124 2fbi_A Probable transcriptiona 96.5 0.0012 4.3E-08 43.3 2.6 67 36-106 37-105 (142)
125 2qm3_A Predicted methyltransfe 96.5 0.00087 3E-08 52.0 1.9 56 39-106 47-103 (373)
126 3u2r_A Regulatory protein MARR 96.5 0.0014 4.7E-08 44.9 2.6 68 36-106 47-117 (168)
127 1z91_A Organic hydroperoxide r 96.5 0.0024 8.3E-08 42.3 3.7 68 36-107 41-110 (147)
128 4hbl_A Transcriptional regulat 96.5 0.014 4.8E-07 38.9 7.6 67 36-106 42-110 (149)
129 3s2w_A Transcriptional regulat 96.5 0.0018 6E-08 43.8 3.0 66 38-107 53-120 (159)
130 2cfx_A HTH-type transcriptiona 96.4 0.0041 1.4E-07 41.9 4.7 47 36-86 6-52 (144)
131 3eyy_A Putative iron uptake re 96.4 0.002 6.9E-08 43.8 3.1 62 35-97 19-82 (145)
132 2w25_A Probable transcriptiona 96.4 0.0042 1.4E-07 42.0 4.7 47 36-86 8-54 (150)
133 2k4b_A Transcriptional regulat 96.4 0.0015 5.2E-08 41.9 2.2 50 37-87 37-87 (99)
134 3u1d_A Uncharacterized protein 96.4 0.0053 1.8E-07 42.4 5.0 67 36-105 30-105 (151)
135 3hrs_A Metalloregulator SCAR; 96.4 0.0025 8.6E-08 45.9 3.5 52 48-106 18-69 (214)
136 2pn6_A ST1022, 150AA long hypo 96.4 0.0033 1.1E-07 42.4 3.9 47 36-86 4-50 (150)
137 4ets_A Ferric uptake regulatio 96.4 0.0049 1.7E-07 42.7 4.8 64 35-98 33-100 (162)
138 2fbk_A Transcriptional regulat 96.3 0.0013 4.6E-08 45.6 1.8 67 37-106 71-141 (181)
139 2frh_A SARA, staphylococcal ac 96.3 0.0019 6.6E-08 42.5 2.5 67 37-106 39-108 (127)
140 2p5v_A Transcriptional regulat 96.3 0.0049 1.7E-07 42.2 4.7 47 36-86 11-57 (162)
141 3nqo_A MARR-family transcripti 96.3 0.0041 1.4E-07 43.6 4.0 70 34-106 40-112 (189)
142 1okr_A MECI, methicillin resis 96.2 0.0013 4.5E-08 42.7 1.2 62 37-105 12-80 (123)
143 2p4w_A Transcriptional regulat 96.2 0.0057 1.9E-07 43.9 4.7 68 30-102 10-81 (202)
144 2dbb_A Putative HTH-type trans 96.2 0.0059 2E-07 41.2 4.4 47 36-86 10-56 (151)
145 1j5y_A Transcriptional regulat 96.2 0.0073 2.5E-07 42.5 5.0 60 34-101 20-80 (187)
146 3k2z_A LEXA repressor; winged 96.1 0.0054 1.8E-07 43.4 4.1 42 43-87 17-58 (196)
147 2cg4_A Regulatory protein ASNC 96.1 0.0059 2E-07 41.3 4.1 47 36-86 9-55 (152)
148 2g9w_A Conserved hypothetical 96.1 0.005 1.7E-07 41.1 3.6 49 36-87 10-62 (138)
149 2dk5_A DNA-directed RNA polyme 96.1 0.0075 2.6E-07 38.0 4.2 48 37-87 22-70 (91)
150 2ia0_A Putative HTH-type trans 96.1 0.0078 2.7E-07 41.9 4.7 47 36-86 18-64 (171)
151 2cyy_A Putative HTH-type trans 96.1 0.0054 1.9E-07 41.5 3.7 47 36-86 8-54 (151)
152 2qlz_A Transcription factor PF 96.1 0.0022 7.4E-08 47.2 1.8 69 29-102 6-79 (232)
153 1i1g_A Transcriptional regulat 96.0 0.0057 2E-07 40.6 3.7 46 37-86 6-51 (141)
154 4b8x_A SCO5413, possible MARR- 95.9 0.0036 1.2E-07 42.1 2.3 64 40-106 40-106 (147)
155 3i4p_A Transcriptional regulat 95.9 0.0076 2.6E-07 41.4 3.9 47 36-86 4-50 (162)
156 1uly_A Hypothetical protein PH 95.9 0.011 3.8E-07 42.0 4.9 52 30-86 15-66 (192)
157 2xvc_A ESCRT-III, SSO0910; cel 95.9 0.007 2.4E-07 34.9 2.9 46 37-85 12-57 (59)
158 2e1c_A Putative HTH-type trans 95.8 0.0091 3.1E-07 41.6 4.2 48 35-86 27-74 (171)
159 2fxa_A Protease production reg 95.8 0.0048 1.6E-07 44.1 2.7 65 37-105 50-116 (207)
160 4fx0_A Probable transcriptiona 95.8 0.0064 2.2E-07 41.0 3.0 66 38-106 36-106 (148)
161 2esh_A Conserved hypothetical 95.8 0.028 9.7E-07 36.5 6.1 70 32-106 10-91 (118)
162 2hoe_A N-acetylglucosamine kin 95.6 0.0091 3.1E-07 46.3 3.8 57 26-87 11-67 (380)
163 4esf_A PADR-like transcription 95.5 0.032 1.1E-06 36.5 5.7 70 31-105 7-86 (117)
164 2vn2_A DNAD, chromosome replic 95.5 0.019 6.3E-07 38.1 4.5 53 49-104 50-106 (128)
165 3cta_A Riboflavin kinase; stru 95.5 0.0082 2.8E-07 43.4 3.0 54 49-106 26-79 (230)
166 1fx7_A Iron-dependent represso 95.3 0.016 5.5E-07 42.0 3.9 49 51-106 25-73 (230)
167 1p4x_A Staphylococcal accessor 95.2 0.014 4.9E-07 43.1 3.5 68 36-106 159-229 (250)
168 1sd4_A Penicillinase repressor 95.1 0.012 4.2E-07 38.1 2.6 51 36-87 11-62 (126)
169 3f8b_A Transcriptional regulat 95.1 0.06 2E-06 35.0 5.9 72 30-106 7-90 (116)
170 1z6r_A MLC protein; transcript 95.0 0.037 1.3E-06 43.0 5.4 52 32-87 13-64 (406)
171 4g6q_A Putative uncharacterize 94.9 0.009 3.1E-07 42.0 1.7 71 29-104 17-92 (182)
172 2p5k_A Arginine repressor; DNA 94.9 0.039 1.3E-06 31.5 4.2 36 41-83 11-51 (64)
173 1v4r_A Transcriptional repress 94.8 0.016 5.5E-07 36.6 2.5 52 32-87 16-69 (102)
174 1jhg_A Trp operon repressor; c 94.8 0.037 1.3E-06 35.6 4.2 42 34-80 44-85 (101)
175 2v79_A DNA replication protein 94.8 0.036 1.2E-06 37.3 4.4 53 49-104 50-106 (135)
176 2qq9_A Diphtheria toxin repres 94.8 0.024 8.1E-07 41.0 3.7 51 49-106 23-73 (226)
177 3elk_A Putative transcriptiona 94.8 0.039 1.3E-06 36.1 4.3 72 30-106 9-90 (117)
178 1yg2_A Gene activator APHA; vi 94.6 0.046 1.6E-06 38.0 4.7 63 36-103 3-77 (179)
179 3l7w_A Putative uncharacterize 94.4 0.032 1.1E-06 35.8 3.1 67 34-105 8-81 (108)
180 3hhh_A Transcriptional regulat 94.4 0.062 2.1E-06 35.0 4.6 70 31-105 9-88 (116)
181 1bia_A BIRA bifunctional prote 94.3 0.045 1.5E-06 41.7 4.4 56 37-99 7-62 (321)
182 1xma_A Predicted transcription 94.0 0.035 1.2E-06 37.7 2.9 71 31-106 37-119 (145)
183 1z05_A Transcriptional regulat 93.8 0.064 2.2E-06 42.1 4.5 52 32-87 36-87 (429)
184 1hsj_A Fusion protein consisti 93.6 0.038 1.3E-06 43.6 2.8 66 37-105 406-474 (487)
185 1sfu_A 34L protein; protein/Z- 93.4 0.039 1.4E-06 33.6 2.0 42 42-87 22-63 (75)
186 3kor_A Possible Trp repressor; 93.4 0.15 5.2E-06 33.6 5.0 41 33-79 61-101 (119)
187 4esb_A Transcriptional regulat 93.3 0.065 2.2E-06 34.8 3.1 65 36-105 10-84 (115)
188 3rkx_A Biotin-[acetyl-COA-carb 93.2 0.091 3.1E-06 40.2 4.3 61 37-103 5-66 (323)
189 2yu3_A DNA-directed RNA polyme 93.1 0.057 1.9E-06 34.3 2.6 49 36-87 38-87 (95)
190 1p4x_A Staphylococcal accessor 92.9 0.073 2.5E-06 39.2 3.2 66 37-105 36-104 (250)
191 3e6c_C CPRK, cyclic nucleotide 92.7 0.12 4E-06 37.0 4.1 36 49-87 176-211 (250)
192 3i71_A Ethanolamine utilizatio 92.6 0.35 1.2E-05 28.0 5.1 52 41-100 9-60 (68)
193 3frw_A Putative Trp repressor 92.3 0.19 6.4E-06 32.6 4.1 41 33-79 44-84 (107)
194 2o0m_A Transcriptional regulat 92.0 0.029 9.8E-07 43.1 0.0 59 37-104 22-80 (345)
195 3tqn_A Transcriptional regulat 92.0 0.15 5E-06 32.8 3.4 46 48-99 30-76 (113)
196 2w48_A Sorbitol operon regulat 91.9 0.17 5.9E-06 38.1 4.3 37 48-87 19-56 (315)
197 2ek5_A Predicted transcription 91.8 0.25 8.5E-06 32.6 4.5 45 48-98 25-70 (129)
198 1stz_A Heat-inducible transcri 91.7 0.25 8.5E-06 38.0 5.0 41 43-87 30-72 (338)
199 2p8t_A Hypothetical protein PH 91.7 0.22 7.4E-06 35.8 4.3 49 49-105 29-77 (200)
200 3ri2_A Transcriptional regulat 91.6 0.22 7.5E-06 32.8 4.1 72 28-105 14-93 (123)
201 1tc3_C Protein (TC3 transposas 91.4 0.19 6.6E-06 26.3 3.1 29 50-81 21-49 (51)
202 2b0l_A GTP-sensing transcripti 91.3 0.22 7.6E-06 31.6 3.7 37 48-87 40-77 (102)
203 2co5_A Viral protein F93; vira 91.1 0.25 8.6E-06 31.3 3.8 55 50-106 28-82 (99)
204 2gqq_A Leucine-responsive regu 91.0 0.037 1.3E-06 37.8 -0.3 46 36-85 14-59 (163)
205 2pjp_A Selenocysteine-specific 90.7 0.21 7.1E-06 32.5 3.2 45 49-100 19-63 (121)
206 1cf7_A Protein (transcription 90.5 0.26 8.8E-06 29.9 3.3 38 48-87 28-65 (76)
207 3c7j_A Transcriptional regulat 90.5 0.27 9.1E-06 35.6 4.0 37 48-87 47-83 (237)
208 3dv8_A Transcriptional regulat 90.4 0.31 1.1E-05 33.7 4.1 34 50-86 169-202 (220)
209 3by6_A Predicted transcription 90.3 0.25 8.6E-06 32.4 3.4 44 48-97 32-76 (126)
210 3lmm_A Uncharacterized protein 90.2 0.27 9.2E-06 40.5 4.1 57 37-102 432-493 (583)
211 3e97_A Transcriptional regulat 90.1 0.36 1.2E-05 33.7 4.3 36 49-87 174-209 (231)
212 2oz6_A Virulence factor regula 90.0 0.27 9.3E-06 33.6 3.6 34 50-86 164-197 (207)
213 3neu_A LIN1836 protein; struct 89.9 0.36 1.2E-05 31.5 3.9 46 48-99 34-80 (125)
214 2gau_A Transcriptional regulat 89.8 0.39 1.3E-05 33.5 4.3 36 49-87 179-214 (232)
215 3ryp_A Catabolite gene activat 89.7 0.29 9.9E-06 33.6 3.5 35 50-87 167-201 (210)
216 2dql_A PEX protein; circadian 89.6 0.49 1.7E-05 30.6 4.3 62 40-106 27-100 (115)
217 2zcw_A TTHA1359, transcription 89.5 0.33 1.1E-05 33.3 3.6 34 50-86 146-179 (202)
218 3iwz_A CAP-like, catabolite ac 89.5 0.32 1.1E-05 33.8 3.6 35 50-87 187-221 (230)
219 4ham_A LMO2241 protein; struct 89.4 0.29 1E-05 32.3 3.2 44 48-97 35-79 (134)
220 4ev0_A Transcription regulator 89.2 0.32 1.1E-05 33.5 3.4 35 49-86 162-196 (216)
221 3d0s_A Transcriptional regulat 89.2 0.42 1.4E-05 33.3 4.1 35 49-86 176-210 (227)
222 3la7_A Global nitrogen regulat 88.9 0.44 1.5E-05 33.8 4.0 36 49-87 192-227 (243)
223 3dkw_A DNR protein; CRP-FNR, H 88.8 0.35 1.2E-05 33.5 3.4 36 49-87 177-212 (227)
224 3l9f_A Putative uncharacterize 88.7 0.3 1E-05 34.9 3.0 59 39-102 40-110 (204)
225 2qc0_A Uncharacterized protein 88.7 0.37 1.3E-05 37.3 3.7 65 39-108 301-365 (373)
226 3b02_A Transcriptional regulat 88.7 0.34 1.1E-05 33.1 3.2 35 50-87 139-173 (195)
227 3maj_A DNA processing chain A; 88.5 0.3 1E-05 38.3 3.1 51 38-97 331-381 (382)
228 1zyb_A Transcription regulator 88.3 0.46 1.6E-05 33.4 3.8 34 50-86 186-219 (232)
229 2zfw_A PEX; five alpha-helices 88.3 0.49 1.7E-05 32.1 3.7 63 40-107 49-123 (148)
230 1ft9_A Carbon monoxide oxidati 88.1 0.44 1.5E-05 33.2 3.5 35 50-87 163-197 (222)
231 1lva_A Selenocysteine-specific 88.0 0.75 2.6E-05 33.7 4.9 55 39-100 145-200 (258)
232 2o3f_A Putative HTH-type trans 87.9 0.36 1.2E-05 31.1 2.7 45 37-84 23-70 (111)
233 2fmy_A COOA, carbon monoxide o 87.9 0.46 1.6E-05 32.9 3.5 35 49-86 166-200 (220)
234 2qlz_A Transcription factor PF 87.8 1.8 6.3E-05 31.4 6.8 44 39-87 169-212 (232)
235 3eqx_A FIC domain containing t 87.7 0.41 1.4E-05 37.3 3.4 64 40-108 302-365 (373)
236 2bgc_A PRFA; bacterial infecti 87.7 0.7 2.4E-05 32.6 4.4 35 50-87 169-204 (238)
237 3pfi_A Holliday junction ATP-d 87.5 0.44 1.5E-05 35.5 3.4 55 40-102 268-324 (338)
238 2vxz_A Pyrsv_GP04; viral prote 87.4 0.53 1.8E-05 32.4 3.4 45 38-87 14-58 (165)
239 3oio_A Transcriptional regulat 87.1 0.87 3E-05 28.7 4.2 42 40-84 12-54 (113)
240 3f8m_A GNTR-family protein tra 87.0 0.78 2.7E-05 33.4 4.4 46 48-100 33-79 (248)
241 3iwf_A Transcription regulator 86.9 0.44 1.5E-05 30.5 2.7 44 37-83 19-65 (107)
242 3u5c_Z RP45, S31, YS23, 40S ri 86.8 0.65 2.2E-05 30.1 3.4 36 49-87 58-93 (108)
243 3kcc_A Catabolite gene activat 86.8 0.57 1.9E-05 33.7 3.5 34 50-86 217-250 (260)
244 3qph_A TRMB, A global transcri 86.5 0.028 9.7E-07 43.3 -3.8 60 37-102 20-79 (342)
245 3edp_A LIN2111 protein; APC883 86.5 0.88 3E-05 32.9 4.4 46 48-99 30-76 (236)
246 1hw1_A FADR, fatty acid metabo 86.3 0.66 2.3E-05 33.1 3.6 45 48-98 28-73 (239)
247 2wv0_A YVOA, HTH-type transcri 86.2 0.94 3.2E-05 32.8 4.5 45 48-98 31-76 (243)
248 3sxy_A Transcriptional regulat 86.2 0.49 1.7E-05 33.5 2.9 37 48-87 33-69 (218)
249 2xzm_8 RPS25E,; ribosome, tran 86.1 0.52 1.8E-05 31.9 2.8 36 49-87 62-97 (143)
250 3ic7_A Putative transcriptiona 85.8 0.23 7.8E-06 32.6 0.9 46 48-99 32-78 (126)
251 3bwg_A Uncharacterized HTH-typ 85.7 1 3.5E-05 32.5 4.4 45 48-98 26-71 (239)
252 3mn2_A Probable ARAC family tr 85.3 1 3.4E-05 28.1 3.8 34 48-84 16-49 (108)
253 1jko_C HIN recombinase, DNA-in 85.1 0.56 1.9E-05 24.7 2.2 22 51-75 22-43 (52)
254 2hs5_A Putative transcriptiona 84.8 0.74 2.5E-05 33.2 3.3 37 48-87 49-85 (239)
255 2e1n_A PEX, period extender; c 84.8 0.8 2.7E-05 30.6 3.3 62 40-106 39-112 (138)
256 3oou_A LIN2118 protein; protei 84.3 1.2 4E-05 27.8 3.8 33 49-84 20-52 (108)
257 2x48_A CAG38821; archeal virus 84.3 0.99 3.4E-05 24.5 3.1 24 49-75 30-53 (55)
258 3ke2_A Uncharacterized protein 83.8 2.2 7.5E-05 27.9 4.9 60 37-101 22-84 (117)
259 2k9s_A Arabinose operon regula 83.8 1.8 6.2E-05 26.8 4.5 42 40-84 8-51 (107)
260 1bl0_A Protein (multiple antib 83.5 1.3 4.3E-05 28.7 3.8 42 40-84 16-58 (129)
261 3ihu_A Transcriptional regulat 83.4 0.99 3.4E-05 31.9 3.4 37 48-87 37-73 (222)
262 1uxc_A FRUR (1-57), fructose r 82.6 0.9 3.1E-05 26.4 2.4 22 51-75 1-22 (65)
263 3eet_A Putative GNTR-family tr 82.4 1.4 4.8E-05 32.5 4.0 47 48-100 50-97 (272)
264 2z99_A Putative uncharacterize 82.4 0.99 3.4E-05 32.8 3.1 57 38-101 103-161 (219)
265 3lsg_A Two-component response 82.2 1.4 4.8E-05 27.1 3.5 33 49-84 18-50 (103)
266 2jpc_A SSRB; DNA binding prote 82.0 1.4 4.7E-05 24.4 3.1 32 38-75 4-35 (61)
267 3fx3_A Cyclic nucleotide-bindi 81.9 0.99 3.4E-05 31.5 2.9 31 49-82 177-207 (237)
268 3l4g_A Phenylalanyl-tRNA synth 81.7 0.29 9.8E-06 39.9 0.0 69 36-109 6-76 (508)
269 2di3_A Bacterial regulatory pr 81.0 1.4 4.7E-05 31.5 3.5 37 48-87 25-64 (239)
270 3mkl_A HTH-type transcriptiona 80.8 2.2 7.7E-05 27.0 4.2 34 40-76 12-46 (120)
271 3lmm_A Uncharacterized protein 80.7 0.32 1.1E-05 40.1 0.0 57 39-100 520-576 (583)
272 1o5l_A Transcriptional regulat 80.1 0.35 1.2E-05 33.6 0.0 34 50-86 164-197 (213)
273 1fse_A GERE; helix-turn-helix 80.1 1.9 6.4E-05 24.6 3.3 34 37-76 16-49 (74)
274 3l09_A Putative transcriptiona 79.7 1.6 5.6E-05 32.4 3.6 60 43-106 35-97 (266)
275 1t6s_A Conserved hypothetical 79.5 0.68 2.3E-05 32.0 1.3 43 38-87 97-139 (162)
276 2l0k_A Stage III sporulation p 79.0 1.4 4.7E-05 27.6 2.6 33 39-76 11-43 (93)
277 2ijl_A AGR_C_4647P, molybdenum 78.8 1.3 4.3E-05 29.6 2.5 64 37-106 28-94 (135)
278 3f2g_A Alkylmercury lyase; MER 78.4 1.9 6.5E-05 31.3 3.5 38 37-78 24-61 (220)
279 1ku3_A Sigma factor SIGA; heli 78.0 2 6.8E-05 24.8 3.0 23 49-74 29-51 (73)
280 2qen_A Walker-type ATPase; unk 77.8 3.8 0.00013 30.0 5.1 45 37-86 284-333 (350)
281 4a0z_A Transcription factor FA 77.6 2.1 7.2E-05 30.1 3.5 47 36-86 13-59 (190)
282 2ra5_A Putative transcriptiona 77.4 0.62 2.1E-05 33.9 0.6 45 48-98 37-82 (247)
283 3ulq_B Transcriptional regulat 76.3 3.1 0.0001 25.5 3.6 41 36-82 33-74 (90)
284 2p7v_B Sigma-70, RNA polymeras 76.2 2.2 7.4E-05 24.3 2.7 24 49-75 24-47 (68)
285 2pi2_A Replication protein A 3 75.9 0.55 1.9E-05 34.8 0.0 58 36-99 208-268 (270)
286 1gdt_A GD resolvase, protein ( 75.6 2.8 9.5E-05 28.7 3.6 30 40-75 151-180 (183)
287 1bm9_A RTP, TER, replication t 75.4 2.7 9.4E-05 27.6 3.3 68 33-103 16-96 (122)
288 1je8_A Nitrate/nitrite respons 75.3 3 0.0001 24.8 3.3 32 38-75 27-58 (82)
289 3kfw_X Uncharacterized protein 75.3 4.8 0.00016 29.5 5.0 48 48-103 18-68 (247)
290 1u8b_A ADA polyprotein; protei 74.9 2.5 8.7E-05 27.3 3.1 31 48-81 91-121 (133)
291 3aaf_A Werner syndrome ATP-dep 74.7 5.1 0.00018 26.4 4.6 65 40-105 37-106 (134)
292 1pdn_C Protein (PRD paired); p 74.5 3.3 0.00011 25.8 3.6 41 38-84 24-64 (128)
293 3iz6_V 40S ribosomal protein S 73.6 0.59 2E-05 30.3 -0.3 36 49-87 59-94 (108)
294 2jn6_A Protein CGL2762, transp 73.2 2.9 0.0001 25.4 2.9 30 50-82 23-52 (97)
295 1tty_A Sigma-A, RNA polymerase 73.2 3 0.0001 25.0 3.0 23 49-74 37-59 (87)
296 2gmg_A Hypothetical protein PF 72.7 2.7 9.2E-05 27.0 2.7 44 36-81 12-60 (105)
297 1x3u_A Transcriptional regulat 71.2 4.9 0.00017 23.1 3.5 33 37-75 21-53 (79)
298 3c57_A Two component transcrip 71.2 4.7 0.00016 24.6 3.6 42 36-83 31-73 (95)
299 2r0q_C Putative transposon TN5 71.1 3.2 0.00011 29.1 3.1 30 40-75 168-197 (209)
300 1hqc_A RUVB; extended AAA-ATPa 71.1 5.5 0.00019 29.1 4.5 47 48-102 262-309 (324)
301 2v7f_A RPS19, RPS19E SSU ribos 71.1 2.5 8.6E-05 28.7 2.4 46 50-102 67-126 (150)
302 2o8x_A Probable RNA polymerase 70.9 3.4 0.00012 23.1 2.7 24 49-75 30-53 (70)
303 1k78_A Paired box protein PAX5 69.4 5 0.00017 26.2 3.6 42 37-84 38-79 (149)
304 3hhg_A Transcriptional regulat 69.0 4.2 0.00014 28.9 3.4 59 37-106 7-68 (306)
305 2pij_A Prophage PFL 6 CRO; tra 68.9 6.1 0.00021 21.9 3.5 31 39-75 5-35 (67)
306 1ixc_A CBNR, LYSR-type regulat 68.9 2.2 7.5E-05 30.3 1.8 59 37-106 5-66 (294)
307 3qkx_A Uncharacterized HTH-typ 68.9 4.6 0.00016 26.3 3.4 27 43-72 20-47 (188)
308 3cuq_B Vacuolar protein-sortin 68.6 9.4 0.00032 27.4 5.2 37 48-87 166-202 (218)
309 1jhf_A LEXA repressor; LEXA SO 67.9 7.8 0.00027 26.7 4.5 33 51-86 26-59 (202)
310 1in4_A RUVB, holliday junction 67.7 5.7 0.0002 29.7 4.0 50 40-96 264-316 (334)
311 1t6s_A Conserved hypothetical 67.4 10 0.00035 26.0 4.9 29 47-78 19-49 (162)
312 2esn_A Probable transcriptiona 67.2 3.2 0.00011 29.8 2.4 59 37-106 14-75 (310)
313 1d5y_A ROB transcription facto 67.1 4.7 0.00016 29.2 3.4 40 40-82 8-48 (292)
314 2xi8_A Putative transcription 67.1 3.5 0.00012 22.5 2.2 24 49-75 13-36 (66)
315 2l8n_A Transcriptional repress 67.0 2.1 7.2E-05 24.9 1.2 22 50-74 9-30 (67)
316 2jrt_A Uncharacterized protein 67.0 8.2 0.00028 24.0 4.0 41 37-82 38-78 (95)
317 3fxq_A LYSR type regulator of 67.0 5 0.00017 28.7 3.5 59 37-106 6-67 (305)
318 1z4h_A TORI, TOR inhibition pr 67.0 3.1 0.00011 23.8 1.9 25 49-76 9-33 (66)
319 1p4w_A RCSB; solution structur 66.9 4.5 0.00016 25.2 2.8 32 37-74 39-70 (99)
320 3ppb_A Putative TETR family tr 66.6 5.2 0.00018 26.2 3.3 27 43-72 21-48 (195)
321 3hug_A RNA polymerase sigma fa 66.4 4.5 0.00015 24.4 2.7 23 49-74 52-74 (92)
322 1sgm_A Putative HTH-type trans 66.0 5 0.00017 26.3 3.1 19 44-62 19-38 (191)
323 1neq_A DNA-binding protein NER 65.7 3.6 0.00012 24.2 2.1 22 49-73 21-42 (74)
324 3omt_A Uncharacterized protein 65.7 4.1 0.00014 23.1 2.3 24 49-75 20-43 (73)
325 1b4a_A Arginine repressor; hel 65.6 8.8 0.0003 25.9 4.3 53 39-99 9-66 (149)
326 2elh_A CG11849-PA, LD40883P; s 65.3 4.7 0.00016 24.2 2.6 28 50-80 38-65 (87)
327 3szp_A Transcriptional regulat 65.1 4.3 0.00015 28.5 2.7 59 37-106 5-66 (291)
328 1u78_A TC3 transposase, transp 64.9 6.2 0.00021 25.1 3.3 31 50-83 22-52 (141)
329 2yve_A Transcriptional regulat 64.8 6.2 0.00021 26.2 3.4 27 43-72 16-43 (185)
330 2zcm_A Biofilm operon icaabcd 64.7 5.2 0.00018 26.5 3.0 36 29-72 10-46 (192)
331 1y6u_A XIS, excisionase from t 64.5 3.2 0.00011 24.4 1.7 25 49-76 15-39 (70)
332 2rnj_A Response regulator prot 63.9 5 0.00017 24.1 2.5 31 38-74 35-65 (91)
333 3t72_q RNA polymerase sigma fa 63.7 5.5 0.00019 24.9 2.8 23 49-74 38-60 (99)
334 3bqz_B HTH-type transcriptiona 63.2 5.7 0.00019 26.1 3.0 25 44-71 15-40 (194)
335 2fq4_A Transcriptional regulat 63.0 5.2 0.00018 26.6 2.8 26 44-72 25-51 (192)
336 2r1j_L Repressor protein C2; p 62.5 4.6 0.00016 22.2 2.0 24 49-75 17-40 (68)
337 3vp5_A Transcriptional regulat 62.4 7.1 0.00024 26.0 3.4 26 44-72 25-51 (189)
338 1zug_A Phage 434 CRO protein; 61.8 5 0.00017 22.2 2.2 24 49-75 15-38 (71)
339 2k9l_A RNA polymerase sigma fa 61.8 9.2 0.00031 22.6 3.4 37 40-79 37-74 (76)
340 2glo_A Brinker CG9653-PA; prot 61.8 5.3 0.00018 22.0 2.2 22 53-77 28-49 (59)
341 2qko_A Possible transcriptiona 61.6 8.5 0.00029 25.9 3.7 36 29-72 31-67 (215)
342 2dg7_A Putative transcriptiona 61.5 6.3 0.00022 26.1 3.0 27 44-73 20-47 (195)
343 2eh3_A Transcriptional regulat 61.4 5.9 0.0002 26.0 2.8 25 44-71 15-40 (179)
344 3lwj_A Putative TETR-family tr 61.3 5.8 0.0002 26.3 2.7 21 49-72 31-51 (202)
345 3dpj_A Transcription regulator 61.3 5.9 0.0002 26.1 2.8 26 44-72 21-47 (194)
346 3f1b_A TETR-like transcription 61.2 6.4 0.00022 26.0 2.9 26 44-72 27-53 (203)
347 3b7h_A Prophage LP1 protein 11 61.1 4.7 0.00016 22.9 2.0 24 49-75 19-42 (78)
348 3dcf_A Transcriptional regulat 61.0 7.7 0.00026 25.9 3.4 37 28-72 33-70 (218)
349 3egq_A TETR family transcripti 60.9 5.4 0.00018 25.8 2.5 27 43-72 16-43 (170)
350 1adr_A P22 C2 repressor; trans 60.7 5 0.00017 22.6 2.0 24 49-75 17-40 (76)
351 3vpr_A Transcriptional regulat 60.7 6.1 0.00021 26.1 2.8 34 31-72 8-42 (190)
352 2wiu_B HTH-type transcriptiona 60.6 6.9 0.00024 22.8 2.7 24 49-75 24-47 (88)
353 1y7y_A C.AHDI; helix-turn-heli 60.6 5.6 0.00019 22.3 2.2 24 49-75 25-48 (74)
354 2b5a_A C.BCLI; helix-turn-heli 60.4 5.6 0.00019 22.5 2.2 24 49-75 22-45 (77)
355 3bru_A Regulatory protein, TET 60.1 8.1 0.00028 26.0 3.4 26 43-71 42-68 (222)
356 3kz9_A SMCR; transcriptional r 60.1 7.9 0.00027 25.5 3.3 25 44-71 30-55 (206)
357 1r69_A Repressor protein CI; g 60.1 5.7 0.00019 21.9 2.2 24 49-75 13-36 (69)
358 3bs3_A Putative DNA-binding pr 59.9 5.8 0.0002 22.4 2.2 24 49-75 22-45 (76)
359 3eyi_A Z-DNA-binding protein 1 59.8 9 0.00031 22.7 3.0 46 37-86 12-58 (72)
360 2a6c_A Helix-turn-helix motif; 59.8 9.1 0.00031 22.3 3.2 24 49-75 30-53 (83)
361 1pb6_A Hypothetical transcript 59.6 7 0.00024 26.0 2.9 36 29-72 21-57 (212)
362 3fzv_A Probable transcriptiona 59.3 6.6 0.00022 27.9 2.9 61 36-106 7-70 (306)
363 3gzi_A Transcriptional regulat 59.1 8.8 0.0003 25.7 3.4 27 43-72 29-56 (218)
364 2ewt_A BLDD, putative DNA-bind 59.1 8.8 0.0003 21.3 2.9 24 49-75 20-45 (71)
365 3e3m_A Transcriptional regulat 59.0 1.6 5.3E-05 32.6 -0.6 54 48-108 10-69 (355)
366 2k9q_A Uncharacterized protein 58.9 5.6 0.00019 22.8 2.0 24 49-75 14-37 (77)
367 2rae_A Transcriptional regulat 58.8 7.2 0.00025 26.0 2.9 26 44-72 30-56 (207)
368 2w7n_A TRFB transcriptional re 58.8 7.6 0.00026 24.5 2.8 28 49-79 33-60 (101)
369 3h5o_A Transcriptional regulat 58.7 0.93 3.2E-05 33.6 -1.9 52 49-107 3-60 (339)
370 2xdn_A HTH-type transcriptiona 58.7 7.8 0.00027 26.0 3.1 20 49-71 30-49 (210)
371 2kfs_A Conserved hypothetical 58.4 4 0.00014 27.8 1.5 26 48-76 29-54 (148)
372 2fna_A Conserved hypothetical 58.3 15 0.00051 26.7 4.7 43 38-86 293-341 (357)
373 2dg8_A Putative TETR-family tr 58.2 5.5 0.00019 26.5 2.2 20 49-71 28-47 (193)
374 3qq6_A HTH-type transcriptiona 58.2 6.3 0.00022 22.9 2.2 24 49-75 22-45 (78)
375 2fq3_A Transcription regulator 58.1 25 0.00087 22.3 5.2 54 30-86 46-100 (104)
376 3knw_A Putative transcriptiona 57.9 7.2 0.00025 26.0 2.8 21 49-72 33-53 (212)
377 3lhq_A Acrab operon repressor 57.9 7.2 0.00025 25.9 2.8 21 49-72 33-53 (220)
378 3k9t_A Putative peptidase; str 57.7 4.8 0.00016 32.1 2.0 45 37-84 389-433 (435)
379 3h5n_A MCCB protein; ubiquitin 57.6 15 0.0005 28.0 4.7 42 42-86 43-84 (353)
380 3ccy_A Putative TETR-family tr 57.5 6.9 0.00023 26.2 2.6 20 43-62 26-46 (203)
381 3on4_A Transcriptional regulat 57.5 5.7 0.0002 25.9 2.1 21 49-72 29-49 (191)
382 2g7s_A Transcriptional regulat 57.4 5.8 0.0002 25.9 2.2 20 49-71 27-46 (194)
383 3he0_A Transcriptional regulat 57.3 5.9 0.0002 26.1 2.2 25 44-71 24-49 (196)
384 3bjb_A Probable transcriptiona 57.1 7.4 0.00025 26.3 2.8 26 44-72 35-61 (207)
385 3t76_A VANU, transcriptional r 57.0 11 0.00036 22.8 3.2 24 49-75 36-59 (88)
386 2guh_A Putative TETR-family tr 57.0 7.3 0.00025 26.7 2.7 27 43-72 51-78 (214)
387 2wui_A MEXZ, transcriptional r 56.8 9.8 0.00033 25.6 3.3 25 44-71 24-49 (210)
388 3c18_A Nucleotidyltransferase- 56.8 23 0.00078 26.7 5.5 53 40-95 227-282 (290)
389 1ldj_A Cullin homolog 1, CUL-1 56.7 7.1 0.00024 33.0 3.0 35 48-85 601-635 (760)
390 2hyt_A TETR-family transcripti 56.7 8.4 0.00029 25.7 2.9 21 49-72 31-51 (197)
391 2z99_A Putative uncharacterize 56.6 17 0.00057 26.2 4.6 29 47-78 27-55 (219)
392 3b81_A Transcriptional regulat 56.6 6.3 0.00021 26.1 2.3 25 44-71 24-49 (203)
393 3qbm_A TETR transcriptional re 56.5 6.3 0.00022 25.9 2.3 25 44-71 20-45 (199)
394 2ibd_A Possible transcriptiona 56.4 8.5 0.00029 25.8 2.9 35 29-71 17-52 (204)
395 3jvd_A Transcriptional regulat 56.4 1.9 6.5E-05 31.9 -0.5 54 49-108 5-63 (333)
396 2g7g_A RHA04620, putative tran 56.3 6.1 0.00021 27.3 2.2 25 44-72 24-48 (213)
397 3kkc_A TETR family transcripti 56.3 4.8 0.00017 26.1 1.6 25 44-71 25-50 (177)
398 1j9i_A GPNU1 DBD;, terminase s 56.2 3.3 0.00011 23.7 0.6 47 51-106 3-52 (68)
399 2h9b_A HTH-type transcriptiona 56.1 2.4 8.1E-05 30.7 0.0 60 37-107 5-67 (312)
400 2o7t_A Transcriptional regulat 55.9 8.1 0.00028 25.7 2.8 27 43-72 20-47 (199)
401 2fd5_A Transcriptional regulat 55.9 6.5 0.00022 25.7 2.2 20 49-71 26-45 (180)
402 2ict_A Antitoxin HIGA; helix-t 55.7 8.7 0.0003 22.9 2.6 24 49-75 20-43 (94)
403 3anp_C Transcriptional repress 55.5 8.2 0.00028 25.8 2.7 20 49-71 28-47 (204)
404 1hlv_A CENP-B, major centromer 55.5 12 0.00042 23.6 3.5 38 37-78 13-50 (131)
405 2d6y_A Putative TETR family re 55.5 8.2 0.00028 26.0 2.7 21 49-72 27-47 (202)
406 3f6w_A XRE-family like protein 55.4 6.8 0.00023 22.6 2.0 24 49-75 26-49 (83)
407 3f0c_A TETR-molecule A, transc 55.3 8.2 0.00028 25.8 2.7 20 49-71 30-49 (216)
408 3dew_A Transcriptional regulat 55.3 6.5 0.00022 25.9 2.1 21 49-72 27-47 (206)
409 3iuo_A ATP-dependent DNA helic 55.3 23 0.00077 22.8 4.7 46 31-82 16-61 (122)
410 3mzy_A RNA polymerase sigma-H 55.2 8.7 0.0003 24.7 2.7 23 49-74 123-145 (164)
411 3dbi_A Sugar-binding transcrip 55.1 2.1 7.3E-05 31.5 -0.4 53 50-108 3-60 (338)
412 2iu5_A DHAS, YCEG, HTH-type dh 55.1 6 0.00021 26.3 2.0 26 43-71 25-51 (195)
413 3kz3_A Repressor protein CI; f 54.8 8 0.00027 22.3 2.3 24 49-75 24-47 (80)
414 3s8q_A R-M controller protein; 54.8 7.8 0.00027 22.3 2.2 24 49-75 23-46 (82)
415 2k27_A Paired box protein PAX- 54.8 5.1 0.00017 26.5 1.5 41 38-84 32-72 (159)
416 3jsj_A Putative TETR-family tr 54.8 8.4 0.00029 25.3 2.6 25 44-72 22-47 (190)
417 2q24_A Putative TETR family tr 54.7 9.2 0.00032 25.3 2.9 25 44-72 28-53 (194)
418 3dpl_C Cullin-5; ubiquitin, NE 54.5 11 0.00037 29.2 3.5 35 49-86 214-253 (382)
419 2i10_A Putative TETR transcrip 54.5 8.8 0.0003 25.8 2.7 35 30-72 15-50 (202)
420 2qtq_A Transcriptional regulat 54.3 9 0.00031 25.4 2.8 21 49-72 35-55 (213)
421 2elj_A Transcriptional adapter 54.3 28 0.00095 21.2 4.8 48 33-83 41-88 (88)
422 1xsv_A Hypothetical UPF0122 pr 54.2 11 0.00037 23.9 3.0 21 49-72 40-60 (113)
423 3szt_A QCSR, quorum-sensing co 54.1 54 0.0018 23.0 8.1 35 36-76 179-213 (237)
424 3ljl_A Transcriptional regulat 54.1 4.7 0.00016 26.2 1.2 21 49-72 33-53 (156)
425 2qib_A TETR-family transcripti 54.0 8.6 0.0003 26.4 2.7 27 43-72 25-52 (231)
426 2gen_A Probable transcriptiona 53.9 9.3 0.00032 25.5 2.8 20 49-71 26-45 (197)
427 2f07_A YVDT; helix-turn-helix, 53.8 9.1 0.00031 25.6 2.7 25 44-71 23-48 (197)
428 2qwt_A Transcriptional regulat 53.7 13 0.00044 24.8 3.5 26 44-72 26-51 (196)
429 3to7_A Histone acetyltransfera 53.6 12 0.00042 27.9 3.5 48 25-87 192-239 (276)
430 3s5r_A Transcriptional regulat 53.4 9.7 0.00033 25.4 2.8 21 49-72 29-49 (216)
431 2hye_C Cullin-4A, CUL-4A; beta 53.4 8.9 0.0003 32.4 3.1 49 48-99 605-658 (759)
432 3cuq_A Vacuolar-sorting protei 53.4 15 0.00051 26.8 3.9 37 48-87 166-202 (234)
433 1s7o_A Hypothetical UPF0122 pr 53.3 10 0.00035 24.1 2.8 23 49-74 37-59 (113)
434 2nx4_A Transcriptional regulat 53.3 9.6 0.00033 25.4 2.8 34 30-71 14-48 (194)
435 2ef8_A C.ECOT38IS, putative tr 53.3 8 0.00027 22.2 2.1 24 49-75 22-45 (84)
436 2ao9_A Phage protein; structur 53.2 11 0.00037 25.8 2.9 24 49-75 47-70 (155)
437 3uj3_X DNA-invertase; helix-tu 53.1 2.8 9.7E-05 28.9 0.0 33 40-78 151-183 (193)
438 3cwr_A Transcriptional regulat 52.8 7.5 0.00026 25.7 2.1 21 49-72 36-56 (208)
439 1uth_A LYSR-type regulatory pr 52.8 2.9 9.9E-05 30.3 0.0 60 36-106 17-79 (315)
440 3gbg_A TCP pilus virulence reg 52.8 15 0.00052 26.2 3.9 34 40-76 174-208 (276)
441 3ni7_A Bacterial regulatory pr 52.6 14 0.00047 25.4 3.5 27 43-72 19-46 (213)
442 2l02_A Uncharacterized protein 52.6 25 0.00084 21.4 4.2 38 40-81 13-50 (82)
443 2kpj_A SOS-response transcript 52.5 8.2 0.00028 23.1 2.1 25 48-75 20-44 (94)
444 3cdl_A Transcriptional regulat 52.3 8.7 0.0003 25.8 2.4 34 30-71 13-47 (203)
445 3g7r_A Putative transcriptiona 52.3 9.7 0.00033 25.9 2.7 36 28-71 37-73 (221)
446 3o60_A LIN0861 protein; PSI, M 52.2 12 0.00042 25.1 3.2 26 44-72 33-59 (185)
447 3bni_A Putative TETR-family tr 52.2 9.9 0.00034 26.1 2.8 25 44-71 56-81 (229)
448 3rd3_A Probable transcriptiona 52.2 6.5 0.00022 25.8 1.7 20 49-71 29-48 (197)
449 3bhq_A Transcriptional regulat 52.1 10 0.00035 25.5 2.8 21 49-72 31-51 (211)
450 3vib_A MTRR; helix-turn-helix 52.0 10 0.00034 25.5 2.7 21 49-72 29-49 (210)
451 3col_A Putative transcription 51.9 6.2 0.00021 25.8 1.6 20 49-71 29-48 (196)
452 3crj_A Transcription regulator 51.8 8 0.00027 26.0 2.2 34 30-71 18-52 (199)
453 1vi0_A Transcriptional regulat 51.8 7.7 0.00026 26.2 2.1 20 49-71 27-46 (206)
454 3rh2_A Hypothetical TETR-like 51.7 7.9 0.00027 26.0 2.1 21 49-72 22-42 (212)
455 1jye_A Lactose operon represso 51.5 2.5 8.4E-05 31.5 -0.6 52 50-107 3-59 (349)
456 2v57_A TETR family transcripti 51.5 12 0.0004 24.5 3.0 24 44-71 27-50 (190)
457 1u5t_A Appears to BE functiona 51.4 18 0.00063 26.2 4.1 37 48-87 179-215 (233)
458 2dt5_A AT-rich DNA-binding pro 51.4 11 0.00036 26.8 2.8 41 39-85 16-57 (211)
459 2oi8_A Putative regulatory pro 51.3 9.1 0.00031 26.3 2.4 20 49-71 35-54 (216)
460 2vt3_A REX, redox-sensing tran 51.3 11 0.00038 26.8 2.9 35 40-77 22-57 (215)
461 2zb9_A Putative transcriptiona 51.2 8.2 0.00028 25.9 2.2 25 44-71 36-61 (214)
462 3c2b_A Transcriptional regulat 51.0 8.2 0.00028 26.0 2.1 21 49-72 34-54 (221)
463 3cjd_A Transcriptional regulat 50.7 8.2 0.00028 25.9 2.1 20 49-71 31-50 (198)
464 1g2h_A Transcriptional regulat 50.7 24 0.00082 19.6 3.8 30 41-76 27-56 (61)
465 1zk8_A Transcriptional regulat 50.6 5.3 0.00018 26.2 1.1 20 49-71 27-46 (183)
466 1ntc_A Protein (nitrogen regul 50.5 24 0.00083 21.2 4.1 33 40-77 56-88 (91)
467 3mvp_A TETR/ACRR transcription 50.5 8.3 0.00029 25.7 2.1 21 49-72 45-65 (217)
468 3ctp_A Periplasmic binding pro 50.4 2.7 9.3E-05 30.9 -0.5 51 51-107 3-58 (330)
469 3him_A Probable transcriptiona 50.3 6.5 0.00022 26.1 1.5 14 49-62 35-48 (211)
470 1r71_A Transcriptional repress 50.2 8.4 0.00029 26.7 2.1 26 50-78 52-77 (178)
471 3c07_A Putative TETR-family tr 50.1 14 0.00047 26.5 3.3 27 43-72 53-80 (273)
472 1rkt_A Protein YFIR; transcrip 50.0 9 0.00031 25.7 2.2 34 30-71 16-50 (205)
473 3dn7_A Cyclic nucleotide bindi 49.8 3.4 0.00012 27.7 0.0 27 49-78 167-193 (194)
474 3nrg_A TETR family transcripti 49.8 8 0.00027 25.8 1.9 25 44-71 26-51 (217)
475 3keo_A Redox-sensing transcrip 49.6 9.7 0.00033 27.2 2.4 40 39-81 20-60 (212)
476 4hku_A LMO2814 protein, TETR t 49.5 7.1 0.00024 25.8 1.6 20 49-71 26-45 (178)
477 3q0w_A HTH-type transcriptiona 49.5 12 0.00039 25.8 2.8 26 44-72 57-83 (236)
478 1t33_A Putative transcriptiona 49.3 8.1 0.00028 26.1 1.9 20 49-72 31-50 (224)
479 1lmb_3 Protein (lambda repress 49.2 9.7 0.00033 22.4 2.0 24 49-75 29-52 (92)
480 2h98_A HTH-type transcriptiona 49.1 3.6 0.00012 30.0 0.0 60 37-107 5-67 (313)
481 2lfw_A PHYR sigma-like domain; 48.6 13 0.00044 24.4 2.7 20 49-71 108-127 (157)
482 2np5_A Transcriptional regulat 48.6 9.5 0.00032 25.6 2.1 20 49-71 28-47 (203)
483 1ui5_A A-factor receptor homol 48.4 12 0.00043 25.3 2.8 20 49-71 28-47 (215)
484 2w53_A Repressor, SMet; antibi 48.3 9.8 0.00034 25.7 2.2 20 49-71 30-49 (219)
485 2fbq_A Probable transcriptiona 48.1 12 0.00042 25.8 2.7 34 30-71 11-45 (235)
486 3fmy_A HTH-type transcriptiona 48.1 14 0.00047 21.1 2.5 24 49-75 23-46 (73)
487 3mz1_A Putative transcriptiona 48.0 3.8 0.00013 28.8 0.0 60 37-107 2-64 (300)
488 3v6g_A Probable transcriptiona 47.9 13 0.00043 25.3 2.7 20 49-71 33-52 (208)
489 1or7_A Sigma-24, RNA polymeras 47.8 14 0.00048 24.6 2.9 23 49-74 155-177 (194)
490 2ras_A Transcriptional regulat 47.6 8.1 0.00028 25.9 1.7 20 49-71 30-49 (212)
491 2of7_A Putative TETR-family tr 47.1 13 0.00044 26.2 2.7 27 44-73 61-88 (260)
492 3nnr_A Transcriptional regulat 47.1 10 0.00035 25.8 2.1 21 49-72 24-44 (228)
493 2q0o_A Probable transcriptiona 46.8 19 0.00065 25.3 3.6 34 36-75 179-212 (236)
494 1x57_A Endothelial differentia 46.7 15 0.00052 21.5 2.7 24 49-75 25-48 (91)
495 2zcx_A SCO7815, TETR-family tr 46.7 13 0.00045 25.7 2.7 20 49-71 42-61 (231)
496 2hku_A A putative transcriptio 46.6 14 0.00046 24.9 2.7 37 28-72 22-58 (215)
497 3hta_A EBRA repressor; TETR fa 46.6 10 0.00036 25.8 2.1 20 49-71 47-66 (217)
498 3bqy_A Putative TETR family tr 46.6 10 0.00035 26.1 2.1 21 49-72 21-41 (209)
499 3trb_A Virulence-associated pr 46.2 13 0.00043 23.2 2.3 25 48-75 25-49 (104)
500 2lfc_A Fumarate reductase, fla 46.1 12 0.0004 25.1 2.3 23 50-75 95-117 (160)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.84 E-value=5.1e-21 Score=149.74 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=105.4
Q ss_pred ChHHHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCC--CCCCcchHHHHHHHhhcCCcee
Q 040869 8 GAKELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHG-RAITLSELVSALDI--QPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 8 ~~~e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~--~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
..+|+.+++..+++++++++.+++|++|++|||||+|++++ +|+|++|||+++|+ +|.++..|+|+||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 56678889999999999999999999999999999999754 79999999999996 4434459999999999999999
Q ss_pred ecccC--CC--CcceecchhccccccC-cccChHHhHHhhcCchhhccCCCC
Q 040869 85 KTKVN--GQ--EEAYGLTAASTLLIKD-KPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 85 ~~~~~--~~--~~~y~~t~~s~~L~~~-~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+.... +| +++|++||.++.|+.+ ++.++++++.+..++.+|++|.+|
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 144 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYL 144 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCH
Confidence 86210 11 3689999999988765 467999999998888899999864
No 2
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.84 E-value=4e-21 Score=149.07 Aligned_cols=125 Identities=38% Similarity=0.689 Sum_probs=107.8
Q ss_pred ccCChHHHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 5 QDQGAKELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 5 ~~~~~~e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
....++|.+++...+++++++++.+++|+++++||||+.|++.++|+|++|||+++|++|.+++.++|+||+|++.|+|+
T Consensus 6 ~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~ 85 (352)
T 1fp2_A 6 NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFE 85 (352)
T ss_dssp --CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEE
T ss_pred cCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEE
Confidence 33445688899999999999999999999999999999998645699999999999995445779999999999999999
Q ss_pred ecccCCCCcceecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 85 KTKVNGQEEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 85 ~~~~~~~~~~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+.. ++++.|++|+.++.|++++|.++++++.+..++.++.+|.+|
T Consensus 86 ~~~--~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L 130 (352)
T 1fp2_A 86 IIT--KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHEL 130 (352)
T ss_dssp EEE--SSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGH
T ss_pred Eec--CCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHH
Confidence 872 015899999999999998888999999998777888888764
No 3
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.82 E-value=1e-20 Score=147.15 Aligned_cols=122 Identities=47% Similarity=0.721 Sum_probs=105.7
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeeccc-
Q 040869 10 KELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKV- 88 (131)
Q Consensus 10 ~e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~- 88 (131)
+|.+++...+++++++++.+++|+++++||||++|++.++|+|++|||+++|++|.+++.++|+||+|++.|+|.+...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 5677888999999999999999999999999999986456999999999999965568899999999999999998710
Q ss_pred --C-CC--CcceecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 89 --N-GQ--EEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 89 --~-~~--~~~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
. +| +++|++|+.++.|++++|.++++++.+..++.++.+|.+|
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 132 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSS 132 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGH
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHH
Confidence 0 01 3789999999999998888999999998888888999764
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.82 E-value=1.3e-20 Score=146.15 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=101.5
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCC
Q 040869 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNG 90 (131)
Q Consensus 11 e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~ 90 (131)
...++...+++++++++.+++|+++++||||+.|++ +|+|++|||+++|+ ++..++|+||+|++.|+|++ .
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c---
Confidence 456778889999999999999999999999999983 69999999999999 99999999999999999999 5
Q ss_pred CCcceecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 91 QEEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 91 ~~~~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+++|++|+.++.|++++|.++++++.+..++.+|.+|.+|
T Consensus 89 -~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 128 (348)
T 3lst_A 89 -DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRV 128 (348)
T ss_dssp -TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTH
T ss_pred -CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHH
Confidence 7999999999999888888999999988777788888764
No 5
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.81 E-value=4.8e-20 Score=143.69 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCc
Q 040869 14 QGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEE 93 (131)
Q Consensus 14 ~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~ 93 (131)
++...+++++.||+.+++|++|++|||||+|++.++|+|++|||+++|+ ++..++|+||+|++.|+|++... ++.+
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~-~~~~ 82 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR-GGKA 82 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-TTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc-Cccc
Confidence 6667789999999999999999999999999976789999999999999 99999999999999999986531 1146
Q ss_pred ceecchhcc-ccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 94 AYGLTAAST-LLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 94 ~y~~t~~s~-~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
.|++|+.++ +|.+++|.++++++.+.. +..|++|.+|
T Consensus 83 ~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L 120 (353)
T 4a6d_A 83 FYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHL 120 (353)
T ss_dssp EEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTH
T ss_pred eeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHH
Confidence 899999987 678888999999998864 5678888764
No 6
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.80 E-value=2.9e-19 Score=137.20 Aligned_cols=107 Identities=24% Similarity=0.312 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCc
Q 040869 14 QGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEE 93 (131)
Q Consensus 14 ~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~ 93 (131)
.++..+++++++++.+++|+++++||||+.|. ++|+|++|||+++|+ +++.++|+||+|++.|+|.+.+ ++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~--~~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~----~~ 77 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIE--SGIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT----RD 77 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----TT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHh--CCCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC----CC
Confidence 67789999999999999999999999999997 379999999999999 9999999999999999999875 68
Q ss_pred ceecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 94 AYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 94 ~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
.|.+|+.++.|+ ++|.++++++.+..++.. ..|.+|
T Consensus 78 ~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l 113 (334)
T 2ip2_A 78 GYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPA 113 (334)
T ss_dssp EEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTH
T ss_pred eEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHH
Confidence 999999999998 888899999988876544 788764
No 7
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.80 E-value=1.4e-19 Score=141.40 Aligned_cols=123 Identities=23% Similarity=0.314 Sum_probs=102.1
Q ss_pred hHHHhHHHHHHH--HHHHhHHHHHHHHHHHHhChHHHHHhCCCC---CCHHHHHhhcCC---CCCCcchHHHHHHHhhcC
Q 040869 9 AKELLQGQAQLY--KLMFSHLSSMSLKCAIELGIADIIHSHGRA---ITLSELVSALDI---QPTKTTGLFRLMRLLVHS 80 (131)
Q Consensus 9 ~~e~~~~~~~l~--~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~---~s~~eLA~~~~~---~~~~~~~l~RlLr~L~~~ 80 (131)
.++..+++..++ +++.+++.+++|+++++||||++|++.++| +|++|||+++|+ +|.+++.++|+||+|++.
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 344567777888 999999999999999999999999963326 999999999998 666788999999999999
Q ss_pred Cceeeccc--CCC--CcceecchhccccccCcc-cChHHhHHhhcCchhhccCCCC
Q 040869 81 SCFNKTKV--NGQ--EEAYGLTAASTLLIKDKP-YCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 81 gl~~~~~~--~~~--~~~y~~t~~s~~L~~~~~-~sl~~~~~~~~~~~~~~~w~~L 131 (131)
|+|++... .+| +++|++|+.++.|++++| .++++++.+..++.++.+|.+|
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L 151 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNF 151 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTH
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHH
Confidence 99998710 011 258999999999998887 7999999998877888888764
No 8
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.79 E-value=9.1e-20 Score=142.55 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=101.2
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCC
Q 040869 11 ELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNG 90 (131)
Q Consensus 11 e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~ 90 (131)
...+....+++++.+++.+++|+++++|||||.|+ ++|+|++|||+++|+ +++.++|+||+|++.|+|.+..
T Consensus 34 ~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~--~g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~--- 105 (369)
T 3gwz_A 34 ARAAAEETVNDILQGAWKARAIHVAVELGVPELLQ--EGPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG--- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGT--TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS---
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhc--CCCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC---
Confidence 34466778999999999999999999999999998 479999999999999 9999999999999999999976
Q ss_pred CCcc-eecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 91 QEEA-YGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 91 ~~~~-y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+++ |.+|++++.|++++|.++++++.+..++..+..|.+|
T Consensus 106 -~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l 146 (369)
T 3gwz_A 106 -HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQL 146 (369)
T ss_dssp -STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTH
T ss_pred -CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhH
Confidence 688 9999999999988888999999998777778888653
No 9
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.79 E-value=1.5e-19 Score=141.55 Aligned_cols=124 Identities=24% Similarity=0.327 Sum_probs=101.5
Q ss_pred ChHHHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhC---CCCCCHHHHHhhcC-CCCCCcchHHHHHHHhhcCCce
Q 040869 8 GAKELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSH---GRAITLSELVSALD-IQPTKTTGLFRLMRLLVHSSCF 83 (131)
Q Consensus 8 ~~~e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~---~~~~s~~eLA~~~~-~~~~~~~~l~RlLr~L~~~gl~ 83 (131)
.++++.+....+++++.+++.+++|++|++|||||+|++. ++|+|++|||+++| .+|.++..|+|+||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 4456788889999999999999999999999999999863 25799999999998 4333345999999999999999
Q ss_pred eecccC--CC--CcceecchhccccccC-cccChHHhHHhhcCchhhccCCCC
Q 040869 84 NKTKVN--GQ--EEAYGLTAASTLLIKD-KPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 84 ~~~~~~--~~--~~~y~~t~~s~~L~~~-~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
++.... +| +++|++|+.++.|+.+ +|.++++++.+..++.++++|.+|
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 146 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYL 146 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhch
Confidence 986210 11 2689999999988754 478999999998888899999764
No 10
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.78 E-value=6e-20 Score=141.19 Aligned_cols=107 Identities=23% Similarity=0.203 Sum_probs=96.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcce
Q 040869 16 QAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAY 95 (131)
Q Consensus 16 ~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y 95 (131)
+..+++++.+++.+++|+++++|||||+|++ +|+|++|||+++|+ ++..++|+||+|++.|+|.+.. +++|
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~----~~~y 76 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG----QGVY 76 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----TSBE
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC----CCeE
Confidence 3567899999999999999999999999983 79999999999999 9999999999999999999976 7899
Q ss_pred ecchhccccccCcccChHHhHHhhcCchhh-ccCCCC
Q 040869 96 GLTAASTLLIKDKPYCMSPTVSAFVDPLFV-APFQSL 131 (131)
Q Consensus 96 ~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~-~~w~~L 131 (131)
.+|+.++.|+++++.++++++.+..++..| ..|.+|
T Consensus 77 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (332)
T 3i53_A 77 GLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVEL 113 (332)
T ss_dssp EECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGH
T ss_pred EcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHh
Confidence 999999999888888999999887665566 777653
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.77 E-value=2.6e-19 Score=139.72 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=96.2
Q ss_pred hHHHhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeeccc
Q 040869 9 AKELLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKV 88 (131)
Q Consensus 9 ~~e~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~ 88 (131)
+.+.+++...++++++|++.+++|+++++|||||.|++.++|+|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE--
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec--
Confidence 446778899999999999999999999999999999965589999999999999 999999999999999999875
Q ss_pred CCCCcceecchhccccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 89 NGQEEAYGLTAASTLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 89 ~~~~~~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+++|++|+.+++|+++++.+ .++.+ ..+..|++|.+|
T Consensus 84 ---~~~y~~t~~s~~L~~~~~~~--~~~~~-~~~~~~~~~~~L 120 (363)
T 3dp7_A 84 ---EDRYVLAKAGWFLLNDKMAR--VNMEF-NHDVNYQGLFHL 120 (363)
T ss_dssp ---TTEEEECHHHHHHHHCHHHH--HHHHH-HHHTTHHHHTTH
T ss_pred ---CCEEecccchHHhhCCCccc--chhee-ecHHhhhhHHHH
Confidence 68999999999998876533 23433 345678888764
No 12
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.76 E-value=1.1e-18 Score=133.50 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=96.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCccee
Q 040869 17 AQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYG 96 (131)
Q Consensus 17 ~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~ 96 (131)
..+++++.+++.+++|+++++||||+.|++ +|+|++|||+++|+ +++.++|+||+|++.|+|++. +++|+
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-----~~~y~ 77 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-----AEGYR 77 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-----CCEEe
Confidence 578999999999999999999999999984 79999999999999 999999999999999999874 68999
Q ss_pred cchhc-cccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 97 LTAAS-TLLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 97 ~t~~s-~~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+|+.+ ++|++++|.++++++.+..++..+..|.+|
T Consensus 78 ~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (335)
T 2r3s_A 78 LTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDL 113 (335)
T ss_dssp ECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTH
T ss_pred cCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhH
Confidence 99999 689888888999999998766788888764
No 13
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.75 E-value=1.9e-18 Score=134.24 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=99.7
Q ss_pred CChHHHhHHHHHHHHHHH-hHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee
Q 040869 7 QGAKELLQGQAQLYKLMF-SHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK 85 (131)
Q Consensus 7 ~~~~e~~~~~~~l~~~~~-~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~ 85 (131)
+.++|..++...++++++ +++.+++|+++++||||+.|++ +|+|++|||+++|+ +++.++|+||+|++.|+|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~ 96 (359)
T 1x19_A 22 MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINL 96 (359)
T ss_dssp ECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE
T ss_pred CCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEe
Confidence 345577788888999886 8999999999999999999984 79999999999999 99999999999999999998
Q ss_pred cccCCCCcceecchh-ccccccCcc---cChHHhHHhhcCchhhccCCCC
Q 040869 86 TKVNGQEEAYGLTAA-STLLIKDKP---YCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 86 ~~~~~~~~~y~~t~~-s~~L~~~~~---~sl~~~~~~~~~~~~~~~w~~L 131 (131)
. +++|++|+. +++|++++| .++++++.+. .+..+.+|.+|
T Consensus 97 ~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L 140 (359)
T 1x19_A 97 E-----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGL 140 (359)
T ss_dssp E-----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGH
T ss_pred e-----CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHH
Confidence 7 469999996 568888888 7999999886 45678888753
No 14
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.74 E-value=2.3e-18 Score=133.85 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCc
Q 040869 14 QGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEE 93 (131)
Q Consensus 14 ~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~ 93 (131)
+....+++++.+++.+++|++++++|||+.|. ++|+|++|||+++|+ ++..+.|+||+|++.|+|.+.. ++
T Consensus 15 ~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~--~~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~----~~ 85 (374)
T 1qzz_A 15 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE----KQ 85 (374)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----C-
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHcChHHHHh--CCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----CC
Confidence 34567899999999999999999999999996 479999999999999 9999999999999999999865 56
Q ss_pred --ceecchhccccccCcccChHHhHHhhcCchhh-ccCCCC
Q 040869 94 --AYGLTAASTLLIKDKPYCMSPTVSAFVDPLFV-APFQSL 131 (131)
Q Consensus 94 --~y~~t~~s~~L~~~~~~sl~~~~~~~~~~~~~-~~w~~L 131 (131)
.|.+|+.++.|++++|.++++++.+..++..| ..|.+|
T Consensus 86 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (374)
T 1qzz_A 86 GRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGL 126 (374)
T ss_dssp CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGH
T ss_pred CeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHH
Confidence 99999999999998888999999887665667 777653
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.73 E-value=4e-18 Score=131.65 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCC
Q 040869 12 LLQGQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQ 91 (131)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~ 91 (131)
+..| ..+++++.+++.+++|+++++||||++|. + |+|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 22 l~~p-~~l~~~~~~~~~~~~l~~a~~lgif~~l~--~-~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~----- 89 (352)
T 3mcz_A 22 LTSV-VDLVKLSDQYRQSAILHYAVADKLFDLTQ--T-GRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE----- 89 (352)
T ss_dssp CCSH-HHHHHHHHTHHHHHHHHHHHHTTHHHHTT--S-CBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHCChHHHhC--C-CCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec-----
Confidence 3344 44999999999999999999999999997 3 9999999999999 999999999999999999987
Q ss_pred Ccceecchhcc-ccccCcccChHHhHHhhcCchhhccCCCC
Q 040869 92 EEAYGLTAAST-LLIKDKPYCMSPTVSAFVDPLFVAPFQSL 131 (131)
Q Consensus 92 ~~~y~~t~~s~-~L~~~~~~sl~~~~~~~~~~~~~~~w~~L 131 (131)
+++|.+|+.++ +|.+++|.++++++.+. ...++.|.+|
T Consensus 90 ~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l 128 (352)
T 3mcz_A 90 GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRL 128 (352)
T ss_dssp TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGH
T ss_pred CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHH
Confidence 47899999998 67778888999988764 3578888653
No 16
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.73 E-value=7.7e-18 Score=130.43 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=96.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcce
Q 040869 16 QAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAY 95 (131)
Q Consensus 16 ~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y 95 (131)
...+++++.+++.+++|++++++|||+.|. ++|+|++|||+++|+ ++..+.|+||+|++.|+|.+.. +++|
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~--~~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~----~g~y 90 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA----PGEF 90 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHH--TTCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE----TTEE
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHh--CCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC----CCeE
Confidence 466789999999999999999999999996 479999999999999 9999999999999999999865 7899
Q ss_pred ecchhccccccCcccChHHhHHhhcCch-hhccCCCC
Q 040869 96 GLTAASTLLIKDKPYCMSPTVSAFVDPL-FVAPFQSL 131 (131)
Q Consensus 96 ~~t~~s~~L~~~~~~sl~~~~~~~~~~~-~~~~w~~L 131 (131)
.+|+.++.|++++|.++++++.+..++. .+..|.+|
T Consensus 91 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (360)
T 1tw3_A 91 VPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRL 127 (360)
T ss_dssp EECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGH
T ss_pred EeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHH
Confidence 9999999999998889999998876554 67888653
No 17
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=98.24 E-value=8.5e-07 Score=53.30 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=47.3
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
+..|.++|.+.+.++|..|||+++|+ +...+.|++..|...|++.... .|.|.++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE----TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC----CceEeeC
Confidence 55688888765578999999999999 9999999999999999987754 6778764
No 18
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=98.22 E-value=8.7e-07 Score=66.73 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=51.0
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLL 104 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L 104 (131)
+.|++.|...++++|+.|||+++|+ +...++|+|+.|+..|++.+++ +++|.+++....|
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~----~~~Y~LG~~~~~l 92 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA----DGTLRIGPHSLRW 92 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT----TSEEEECTHHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----CCcEEehHHHHHH
Confidence 5689999876678999999999999 9999999999999999999876 6789999865443
No 19
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.97 E-value=4.3e-05 Score=48.33 Aligned_cols=63 Identities=14% Similarity=0.295 Sum_probs=53.2
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccc
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTL 103 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~ 103 (131)
.++..-.++.|+..| . +++|..|||+.+|+ ++..+.|.|+.|...|++.+.. +.|.+|+.++.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-----g~y~l~~~g~~ 88 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-----ERWVVTDAGKI 88 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----TEEEECTTTCC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-----CEEEECCCchH
Confidence 455556677889988 4 67999999999999 9999999999999999999763 58999887654
No 20
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=97.96 E-value=9.1e-06 Score=60.07 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=50.5
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+.|++.|.+.++++|+.|||+++|+ ++..++|+|+.|...|++.+.. .++|.+++...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~----~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT----TSCEEECTHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC----CCcEEECHHHH
Confidence 5678888765568999999999999 9999999999999999999874 68899998543
No 21
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=97.95 E-value=1.7e-06 Score=64.60 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=51.0
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLL 104 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L 104 (131)
+.|++.|.+.++++|+.|||+++|+ ++..++|+|+.|+..|++.++.. .++|.+++....|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~---~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG---ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS---SSEEEECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---CCcEEcCHHHHHH
Confidence 4567777754578999999999999 99999999999999999998751 3899999865444
No 22
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=97.95 E-value=6.4e-06 Score=60.70 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=51.5
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLL 104 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L 104 (131)
+.|++.|.+.++++|+.|||+++|+ ++..++|+|+.|...|++.+... .++|.+++....|
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~---~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP---AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG---GCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---CCeEEECHHHHHH
Confidence 5678888765568999999999999 99999999999999999998751 4789999865544
No 23
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.90 E-value=7e-06 Score=50.64 Aligned_cols=49 Identities=12% Similarity=0.324 Sum_probs=42.9
Q ss_pred HHhChHHHHHhCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHG-RAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~-~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-+..|++.|.+.+ +++|+.||++.+ ++ +...++|.|+.|...|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 3556889997654 799999999999 88 9999999999999999999864
No 24
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.81 E-value=1.7e-05 Score=52.32 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSAL--DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~--~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
.+-.|++.|.+ .+++|+.+||+.+ |+ .+..+.+-|+.|...|++.... .+.|.+|+.++.+.
T Consensus 14 ~d~~IL~~L~~-~g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~----rg~Y~LT~~G~~~l 77 (111)
T 3b73_A 14 WDDRILEIIHE-EGNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA----NGVYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHHHHH-HSCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS----TTCEEECHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC----CceEEECchHHHHH
Confidence 45678888875 3699999999999 99 9999999999999999999875 56999999998443
No 25
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=97.79 E-value=8.2e-06 Score=60.78 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=48.5
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+.|++.|...++++|+.|||+++|+ ++..++|+|+.|...|++.+.. .++|.+++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~----~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA----DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----CCeEEecHHHH
Confidence 4466666544578999999999999 9999999999999999999875 44899988643
No 26
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=97.75 E-value=1.2e-05 Score=59.62 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=50.6
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
+.|++.|.+.++++|+.|||+++|+ ++..++|+|+.|...|++.+. +++|.+++....|.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHH
Confidence 4567777654578999999999999 999999999999999999986 58899998754443
No 27
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=97.72 E-value=1.2e-05 Score=60.04 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=50.0
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLL 104 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L 104 (131)
+.|++.|...++++|+.|||+++|+ +...++|+|+.|...|++.+. +++|.+++....|
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~~~l 82 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-----GSAFWLTPRVLEL 82 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-----SSEEEECGGGGGT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-----CCEEEEcHHHHHH
Confidence 4567777654578999999999999 999999999999999999986 5889999865444
No 28
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=97.63 E-value=6.2e-05 Score=49.80 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 28 SSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
...+|.-..++.|+..|.. .+++|+.|||+.+|+ ++..+.|.|+.|...|++..... +....|.+++-
T Consensus 35 ~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~ 102 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQ-DEELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-GKLALYSLGDE 102 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred HHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHH
Confidence 3455556678889999975 478999999999999 99999999999999999987641 00124776654
No 29
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.62 E-value=5e-05 Score=47.67 Aligned_cols=65 Identities=9% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
++..-.++.|+..|.. ++++|..|||+.+|+ ++..+.|.++.|...|++..... +....|.+|+-
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~-~r~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD-AQRILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-SSCEEEEECCH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChH
Confidence 4445567788888874 568999999999999 99999999999999999987651 00223666654
No 30
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.62 E-value=5.8e-05 Score=48.69 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=50.2
Q ss_pred HHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 32 LKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 32 L~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+.-..++.|+..|. .+++|..|||+.+|+ ++..+.|.++.|...|++..... +....|.+|+.+.
T Consensus 18 l~~~~r~~IL~~L~--~~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 18 LSDETRWEILTELG--RADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV-GREIRYRALGAEL 82 (114)
T ss_dssp TTCHHHHHHHHHHH--HSCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHH
T ss_pred hCChHHHHHHHHHH--cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHH
Confidence 33345677888884 368999999999999 99999999999999999987641 0012388888664
No 31
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.59 E-value=0.00011 Score=46.77 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
.+|.--.++.|...|. .++.|+.|||+.+|+ ++..+.+.|+.|...|++..... +....|.+|+
T Consensus 18 ~~l~~~~r~~Il~~L~--~~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-g~~~~y~l~~ 81 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLV--EGEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN-IKQIFYRLTE 81 (102)
T ss_dssp HHHCSHHHHHHHHHHH--TCCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS-SSCCEEEECS
T ss_pred HHcCCHHHHHHHHHHH--hCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEECc
Confidence 3455556777888886 378999999999999 99999999999999999987651 0023466665
No 32
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.53 E-value=6e-05 Score=47.64 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.++.--.++.|+..|.+ +++|+.|||+.+|+ ++..+.|.|+.|...|++..... +....|.+++-
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-g~~~~y~l~~~ 82 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE-AQTVYYTLKSE 82 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-TTCCEEEECCH
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEECHH
Confidence 44555667788888874 78999999999999 99999999999999999987651 00123666553
No 33
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.50 E-value=8.8e-05 Score=48.69 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhc
Q 040869 29 SMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAS 101 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s 101 (131)
.++|.--.++.|+..|. .+++|+.|||+.+|+ +...+.+.|+.|...|++..... +....|.+++-.
T Consensus 12 ~~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~-gr~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLS--RGPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ-GRVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec-CCEEEEEECHHH
Confidence 45666678888999998 478999999999999 99999999999999999987641 002347777754
No 34
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=97.50 E-value=0.00015 Score=48.59 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=49.3
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
+..+..|++.|.+.++++|++||.+.+ ++ +..++||.|+.|+..|++.+....++..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 456677899998767899999999998 67 89999999999999999998753223345754
No 35
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=97.49 E-value=0.00014 Score=48.38 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=39.2
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
++++|..|||+++|+ ++..++++|+.|...|++..... ..|.|.++.-
T Consensus 24 ~~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g--~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG--AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC--CCCceEeCCC
Confidence 478999999999999 99999999999999999987631 0367877653
No 36
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=97.47 E-value=0.00021 Score=48.69 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
+..+..|++.|.+.++++|++||.+.+ ++ +..++||.|+.|+..|++.+....++..+|..+
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 345566899998767899999999998 56 889999999999999999986532223457653
No 37
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.43 E-value=0.00015 Score=46.98 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=43.3
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+|.--.++.|+..|. .+++|+.|||+.+|+ ++..+.|.|+.|...|++....
T Consensus 21 al~~~~r~~IL~~L~--~~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 21 ALANGRRLQILDLLA--QGERAVEAIATATGM---NLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHTTSTTHHHHHHHT--TCCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhCCHHHHHHHHHHH--cCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 333445566777786 378999999999999 9999999999999999998764
No 38
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.41 E-value=0.00014 Score=46.77 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=44.2
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++.--.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 4444566778888873 68999999999999 9999999999999999998764
No 39
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=97.39 E-value=0.00016 Score=48.48 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
++++|..+||+.+|+ ++..+.|+++.|...|++.... .+.|.+|+.++.+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 20 KGYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK----YRGLVLTSKGKKIG 70 (142)
T ss_dssp HSSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred cCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee----CceEEEchhHHHHH
Confidence 368999999999999 9999999999999999999875 57899999887554
No 40
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=97.38 E-value=0.00016 Score=44.57 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=40.2
Q ss_pred ChHHHHHhC-----CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 39 GIADIIHSH-----GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 39 ~ifd~l~~~-----~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.|++.|.+. |+|.|+.|||+.+|+ .+..++|-|..|...|++....
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 356666554 689999999999999 8899999999999999999875
No 41
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.38 E-value=8.9e-05 Score=46.50 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=54.4
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccc
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTL 103 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~ 103 (131)
.++....++.|+..|.. .+++|..|||+.+|+ ++..+.|.++.|...|++...... ++ ...|.+|+.+..
T Consensus 11 ~~l~~~~~~~iL~~L~~-~~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLP-RRKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHH-HSEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred cccCChHHHHHHHHHHh-cCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence 45566677888888864 368999999999999 999999999999999999854311 11 245888888753
No 42
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=97.38 E-value=0.00014 Score=47.81 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=50.4
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.+|.--.++.|+..|. .++.+..|||+.+|+ ++..+.|.|+.|...|++..... +....|.+|+.
T Consensus 16 ~aL~~~~r~~IL~~L~--~~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~ 80 (118)
T 2jsc_A 16 RALADPTRCRILVALL--DGVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATYE-GRQVRYALADS 80 (118)
T ss_dssp HHHSSHHHHHHHHHHH--TTCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSH
T ss_pred HHhCCHHHHHHHHHHH--cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChH
Confidence 3444556778888887 368999999999999 99999999999999999987641 00224777764
No 43
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.36 E-value=0.00033 Score=42.89 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=39.4
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
..|++.|.+ .+++|..|||+.+|+ ++..+.|.|+.|...|++...
T Consensus 3 ~~Il~~L~~-~~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNR-HNGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHH-SCCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 357777875 368999999999999 999999999999999999854
No 44
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=97.30 E-value=0.00016 Score=53.57 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
.++.|...|.+ .+++|..|||+++|+ ++..+.|+++.|...|++.+... ...|.+|+.++.+.
T Consensus 153 ~~~~IL~~L~~-~~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r---~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYE-TKGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK---DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH-HTCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT---TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---ccEEEECHHHHHHH
Confidence 45567777764 368999999999999 99999999999999999998642 57899999998664
No 45
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.29 E-value=0.00019 Score=47.52 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHhChHHHHHhCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHGRA-ITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~-~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+..|+..|.+.++| +|+.|||+++++ +...++|.|+.|...|++.+..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 355677778766677 999999999999 9999999999999999998753
No 46
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.26 E-value=0.001 Score=44.09 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
..++.|+..|... +++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 4566688888763 58999999999999 999999999999999999986421 11 134789998886654
No 47
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.25 E-value=0.00033 Score=43.35 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcc-hHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTT-GLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~-~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
.+=.|.+.|.. .+|.|+.+||+.+|+ .+. .++|.|..|...|++..... |.-.|.+|+.++
T Consensus 12 ~~~~IL~~Lk~-~g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~--gRP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFN-VSDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT--TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHH-TCCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS--SSCEEEECHHHH
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC--CCCCeEeCHhHH
Confidence 34467778876 469999999999999 898 99999999999999986531 133788888765
No 48
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=97.23 E-value=0.00039 Score=46.84 Aligned_cols=60 Identities=15% Similarity=0.337 Sum_probs=47.1
Q ss_pred HHHhChHHHHHhCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 35 AIELGIADIIHSHG-RAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 35 a~~L~ifd~l~~~~-~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
..+..|++.|.+.+ +++|++||.+.+ ++ +..++||.|+.|+..|++.+....++..+|..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34566899998666 799999999998 56 88999999999999999998653222345764
No 49
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=97.23 E-value=0.00045 Score=47.36 Aligned_cols=61 Identities=8% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
+..+.-|++.|.+.++++|++||.+.+ ++ +..++||.|+.|+..|++.+....++..+|..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 556677899998767899999999998 56 88999999999999999998653222345765
No 50
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=97.22 E-value=0.00019 Score=49.38 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 28 SSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
..++|.--.++.|+..|. .+++|+.|||+.+|+ +...+.+.|+.|...|++..... +....|.+|+...
T Consensus 51 ~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHH
Confidence 456777788899999997 378999999999999 99999999999999999987651 0012488887653
No 51
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.20 E-value=0.00047 Score=44.40 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=48.5
Q ss_pred ChHHHHHhCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 39 GIADIIHSHGRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
.|...|. .++++..||++.+ |+ ++..+.+.|+.|...|++.+.... ++ .-.|.+|+.++.+.
T Consensus 18 ~IL~~L~--~~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 18 VILXHLT--HGKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHT--TCCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHH--hCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 3444554 3689999999999 99 999999999999999999976422 11 13599999987654
No 52
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=97.19 E-value=0.00054 Score=42.23 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=39.7
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.|.+.|.+ .+.++++|||+.+++ ++..++|.|..|...|++.+.
T Consensus 6 ~Il~~L~~-~g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLAL-RGRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHH-SCSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-cCCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 36677775 478999999999999 999999999999999999987
No 53
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=97.18 E-value=0.00047 Score=46.70 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
+..+..|++.|.+.++++|++||.+.+ ++ +..++||.|..|+..|++.+....++..+|...
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 445677899998766899999999988 45 889999999999999999986532233457654
No 54
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.17 E-value=0.00028 Score=47.39 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
..++.|...|...++++|..|||+.+++ ++..+.|+++.|...|++...... |. .-.+.+|+.++.+...
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHH
Confidence 3455577777655678999999999999 999999999999999999976421 11 1238899998866543
No 55
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.14 E-value=0.00041 Score=46.16 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 47 HGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 47 ~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
.++++|..+||+.+++ ++..+.|+++.|...|++... .+.|.+|+.++.+.
T Consensus 28 ~~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~-----~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKK-----EDGVWITNNGTRSI 78 (139)
T ss_dssp TTSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHH
T ss_pred cCCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEec-----CCeEEEChhHHHHH
Confidence 3578999999999999 999999999999999999976 36799999887554
No 56
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.13 E-value=0.00079 Score=41.75 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHhChHHHHHhCC--CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 36 IELGIADIIHSHG--RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 36 ~~L~ifd~l~~~~--~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
.+-.|.+.|.+.+ .++|+.|||+++|+ +...+.|.|..|...|++...+. .++.|...+...
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~--~~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS--SSCEEEEC----
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--CCCeeEEeCcHH
Confidence 4566778886533 47999999999999 99999999999999999987531 146777766554
No 57
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.12 E-value=0.00052 Score=42.06 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=46.4
Q ss_pred HHhChHHHHHhCC--CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 36 IELGIADIIHSHG--RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 36 ~~L~ifd~l~~~~--~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
.+-.|.+.|...+ .++|+.|||+++|+ +...+.|.|..|...|++...+. .++.|..+|
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~--~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS--SSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--CCCceEecC
Confidence 3566778887533 38999999999999 99999999999999999987541 146666554
No 58
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=97.09 E-value=0.00048 Score=44.83 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=55.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCC--HHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccCCCCc
Q 040869 17 AQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAIT--LSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEE 93 (131)
Q Consensus 17 ~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s--~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~ 93 (131)
..++++..+.|... |...|. .++.+ ..||++.+ |+ ++..+.+.|+.|...|++++... ...
T Consensus 18 ~~~l~~l~~~wrl~---------IL~~L~--~g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--r~~ 81 (111)
T 3df8_A 18 ESVLHLLGKKYTML---------IISVLG--NGSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--QIT 81 (111)
T ss_dssp SSTHHHHHSTTHHH---------HHHHHT--SSSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES--SSE
T ss_pred HHHHHHHcCccHHH---------HHHHHh--cCCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec--CcE
Confidence 44455555555433 444555 35777 99999999 99 99999999999999999998641 135
Q ss_pred ceecchhcccccc
Q 040869 94 AYGLTAASTLLIK 106 (131)
Q Consensus 94 ~y~~t~~s~~L~~ 106 (131)
.|.+|+.++.+..
T Consensus 82 ~y~LT~~G~~l~~ 94 (111)
T 3df8_A 82 TYALTEKGMNVRN 94 (111)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEEECccHHHHHH
Confidence 6999999886653
No 59
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=97.09 E-value=0.00054 Score=43.13 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=40.1
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.|.+.|.+ .+.+|++|||+.+++ ++..++|.|..|...|++.+..
T Consensus 6 ~Il~~L~~-~g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLAL-QGRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHH-cCCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 36777775 478999999999999 9999999999999999999873
No 60
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.07 E-value=0.00031 Score=44.14 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=47.8
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcch-HHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTG-LFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~-l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
++..|...+.++|..|||+.+++ ++.. +.|+++.|...|++.....+.....+.+|+.++.+..
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 45556554448999999999999 9999 9999999999999984321001234788888876553
No 61
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=97.06 E-value=0.00059 Score=45.15 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=44.5
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+|.--.++.|+..|. .++.++.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 42 aL~~~~rl~IL~~L~--~~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 42 VLADPNRLRLLSLLA--RSELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHCCHHHHHHHHHHT--TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHH--cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 444446778888887 368999999999999 9999999999999999998764
No 62
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.01 E-value=0.0046 Score=40.78 Aligned_cols=66 Identities=6% Similarity=0.033 Sum_probs=51.6
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 3455777776 578999999999999 999999999999999999976421 11 124789998886554
No 63
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.01 E-value=0.00051 Score=43.23 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred HhChHHHHHhCCCCCCHHHH----HhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSEL----VSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eL----A~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
++.|+..|.. .+++|..|| |+.+++ ++..+.|+++.|...|++.+.... ....|.+|+.++.+...
T Consensus 10 q~~iL~~l~~-~~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~~~ 79 (99)
T 1tbx_A 10 EAIVLAYLYD-NEGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFAIS 79 (99)
T ss_dssp HHHHHHHHTT-CTTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHHHH
Confidence 4556777764 468999999 999999 999999999999999999875310 13468899998866543
No 64
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.00 E-value=0.00096 Score=44.32 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=53.0
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
..++.|+..|....+++|..+||+.+|+ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 3456677788753468999999999999 999999999999999999876421 11 233889999886554
No 65
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.99 E-value=0.00073 Score=41.48 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=47.6
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
+=.|++.|.+++.|+++.|||+++|+ |...+.+.|..|...|.+.... .-.|+++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk----RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS----PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence 34578889888899999999999999 9999999999999999887665 5677765
No 66
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.98 E-value=0.00077 Score=42.88 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=47.4
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
|...|. .+ ++..+||..+|+ +++.+.+.++.|...|++.... +.|.+|+.++.+..
T Consensus 13 IL~~i~--~~-~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-----~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 13 ILEACK--SG-SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-----KQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHT--TC-BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHHHH
T ss_pred HHHHHH--cC-CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-----CeeEEChhHHHHHH
Confidence 444454 24 999999999999 9999999999999999999874 56999999986553
No 67
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.98 E-value=0.00067 Score=44.54 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=51.8
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 34 ~~~~iL~~l~~-~~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (139)
T 3bja_A 34 VQFGVIQVLAK-SGKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK 102 (139)
T ss_dssp HHHHHHHHHHH-SCSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence 34557777765 468999999999999 999999999999999999875421 11 123789999886654
No 68
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.97 E-value=0.0006 Score=45.00 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=53.3
Q ss_pred HHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 36 IELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 36 ~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
.++.|+..|...+ +++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+...
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~ 103 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHH
Confidence 3455777777654 58999999999999 999999999999999999976422 11 2347899998866543
No 69
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.97 E-value=0.0032 Score=42.05 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=50.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ .-.|.+|+.++.+..
T Consensus 39 ~~~iL~~l~~-~~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 39 QLFVLASLKK-HGSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHH-HSEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 3446777764 368999999999999 999999999999999999986421 11 124788998876543
No 70
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.97 E-value=0.001 Score=43.76 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred HhChHHHHHhCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGR-AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~-~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|...++ ++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 4446777765443 8999999999999 999999999999999999876421 11 124778988876654
No 71
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.96 E-value=0.0053 Score=40.98 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=49.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec---ccCCC-CcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT---KVNGQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~---~~~~~-~~~y~~t~~s~~L~~~ 107 (131)
++.|+..| . .+++|..|||+.+++ ++..+.|+++.|...|++... .+.|+ .-.+.+|+.++.+...
T Consensus 40 q~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~ 109 (151)
T 3kp7_A 40 QSHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKE 109 (151)
T ss_dssp HHHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHH
T ss_pred HHHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHH
Confidence 33477778 4 578999999999999 999999999999999999962 11111 2347889988866543
No 72
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=96.96 E-value=0.0039 Score=41.91 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=50.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|....+++|..+||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 45578888433578999999999999 999999999999999999986421 11 123789998886554
No 73
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.96 E-value=0.0013 Score=45.76 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=45.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccccCcccChHHhHHhh
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKDKPYCMSPTVSAF 119 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~~~~~sl~~~~~~~ 119 (131)
++++|..+||+.+++ ++..++++|..|...|++..... ..|.|.++.-.. .-++.+.+...
T Consensus 42 ~~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~p~------eItL~dVi~av 102 (159)
T 3lwf_A 42 DGPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG--AHGGYVLNGDPE------KITAGDIIRTL 102 (159)
T ss_dssp SCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS--TTCEEEECSCTT------TCBHHHHHHHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC--CCCceEecCCHH------HCCHHHHHHHH
Confidence 468999999999999 99999999999999999997641 135677654321 12555555554
No 74
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.96 E-value=0.00064 Score=44.11 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=47.7
Q ss_pred hHHHHHhCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 40 IADIIHSHGRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
|...|.. ++++..|||+.+ ++ ++..+.+.|+.|...|++...... ++ .-.|.+|+.++.+.
T Consensus 27 IL~~L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 4444553 689999999999 99 999999999999999999976421 11 13499999987654
No 75
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.95 E-value=0.00099 Score=44.89 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccC-CC-
Q 040869 15 GQAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ- 91 (131)
Q Consensus 15 ~~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~- 91 (131)
|...+++++.+-|...+|. .|. .++.+..||++.+ |+ ++..|.+.|+.|...|++.+.... +.
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~--~g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMI--DGKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHT--TSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHh--cCCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 3455566666666554443 333 3789999999999 99 999999999999999999986432 11
Q ss_pred Ccceecchhcccccc
Q 040869 92 EEAYGLTAASTLLIK 106 (131)
Q Consensus 92 ~~~y~~t~~s~~L~~ 106 (131)
.-.|.+|+.++.|..
T Consensus 81 ~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 81 KVEYSLTEFGRTLEP 95 (131)
T ss_dssp EEEEEECTTGGGGHH
T ss_pred eEEEEECHhHHHHHH
Confidence 135999999987753
No 76
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.95 E-value=0.00078 Score=44.23 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 31 ~~~iL~~l~~-~~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 31 QVACLLRIHR-EPGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHHH-STTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 4456777765 478999999999999 999999999999999999985421 00 123788998876554
No 77
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.95 E-value=0.00086 Score=41.76 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.....|.+.|.+ .+ +|+.|||+++|+ +...++|.|..|...|++..... .+-.|..+..
T Consensus 17 ~~~~~IL~lL~~-~g-~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~--~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGI-EG-ATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDD--IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSS-ST-EEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSS--SSCEEESCC-
T ss_pred HHHHHHHHHHHH-cC-CCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC--CCCcceeccC
Confidence 345667888885 33 999999999999 99999999999999999987641 1334555543
No 78
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.94 E-value=0.00025 Score=44.69 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
++|..+||+.+++ ++..+.|+++.|...|++..... .....|.+|+.++.+..
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~d-~R~~~v~LT~~G~~~~~ 82 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECELE-GRTKIIRLTDKGQKIAQ 82 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCCC-CCeEEEEEChhHHHHHH
Confidence 4999999999999 99999999999999999943320 00124899998886653
No 79
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.92 E-value=0.0012 Score=44.75 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=47.9
Q ss_pred HHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 41 ADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 41 fd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
...|.. ++++|..+||+.+|+ +...+.|.++.|...|++.... +..+.+|+.++.+..
T Consensus 46 ~~~l~~-~~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~----~~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 46 SDLIRE-VGEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP----WRGVFLTAEGEKLAQ 103 (155)
T ss_dssp HHHHHH-HSCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET----TTEEEECHHHHHHHH
T ss_pred HHHHHh-CCCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec----CCceEEChhHHHHHH
Confidence 335543 367999999999999 9999999999999999998875 567889998875543
No 80
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=96.89 E-value=0.00087 Score=45.74 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=44.9
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.+|++.+.|... .++++|..+||+.+++ ++..+.++|+.|...|++.... |.|.|.++.-
T Consensus 15 yAl~~L~~La~~-----~~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r---G~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN-----PSSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR---GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS-----CGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred HHHHHHHHHHhC-----CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc---CCCceEeCCC
Confidence 356666655321 2468999999999999 9999999999999999998764 1466776653
No 81
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.87 E-value=0.0012 Score=43.63 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=51.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|....+++|..+||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 34477777223578999999999999 999999999999999999986421 11 224788988876553
No 82
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.87 E-value=0.00083 Score=46.20 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=51.9
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|...++++|..|||+.+++ ++..+.|+++.|...|++.+.... |+ ...+.+|+.++.+..
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 345577777754578999999999999 999999999999999999986421 11 234889998886654
No 83
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.86 E-value=0.00072 Score=44.44 Aligned_cols=67 Identities=6% Similarity=0.001 Sum_probs=52.1
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 39 ~~~~iL~~l~~-~~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 39 TQWAALVRLGE-TGPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHHH-HSSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 35667888865 358999999999999 999999999999999999975321 00 124889999886554
No 84
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.86 E-value=0.01 Score=39.58 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee--cccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK--TKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~--~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++.. .... ++ .-.+.+|+.++.+..
T Consensus 42 ~~~~iL~~l~~-~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~ 112 (154)
T 2qww_A 42 QQLAMINVIYS-TPGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK 112 (154)
T ss_dssp HHHHHHHHHHH-STTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence 34557777775 367999999999999 99999999999999999998 4321 11 125889999886554
No 85
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=96.86 E-value=0.0011 Score=43.06 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=44.3
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++....++.|+..|.+ ++.|..|||+.+|+ ++..+.|.++.|...|++....
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3444567788888885 58999999999999 9999999999999999998654
No 86
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.86 E-value=0.0016 Score=44.32 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=52.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 48 q~~iL~~l~~-~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAA-KPNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 4457777775 368999999999999 999999999999999999986432 11 134889999886654
No 87
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.85 E-value=0.00091 Score=44.55 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|... +++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 455577777753 58999999999999 999999999999999999976421 11 245889998886654
No 88
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.85 E-value=0.001 Score=45.02 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=49.9
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 51 ~~~iL~~l~~-~~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 118 (162)
T 2fa5_A 51 EWRVITILAL-YPGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE 118 (162)
T ss_dssp HHHHHHHHHH-STTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence 4457777775 468999999999999 999999999999999999875421 11 245889999886553
No 89
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=96.85 E-value=0.0014 Score=43.39 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=43.3
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
.++..|....+++|..|||+.+|+ ++..+.|+++.|...|++......++...|..+.
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 355566422478999999999999 9999999999999999999853211134455554
No 90
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.83 E-value=0.0015 Score=44.40 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=39.1
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
++++|..+||+.+++ ++..+.++|..|...|++..... ..|.|.++.
T Consensus 26 ~~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar 72 (143)
T 3t8r_A 26 QGCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG--AKGGYQLRV 72 (143)
T ss_dssp SCCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS--SSSEEEESS
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC--CCCCeeecC
Confidence 368999999999999 99999999999999999986541 135677654
No 91
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.83 E-value=0.0011 Score=44.52 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=50.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 45 ~~~iL~~l~~-~~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 45 EWRVLACLVD-NDAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHHHSS-CSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 4456777764 468999999999999 999999999999999999975421 11 234889999886554
No 92
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=96.83 E-value=0.00061 Score=46.68 Aligned_cols=60 Identities=17% Similarity=0.359 Sum_probs=46.7
Q ss_pred HHHhChHHHHHhCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 35 AIELGIADIIHSHG-RAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 35 a~~L~ifd~l~~~~-~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
..+.-|++.|.+.+ +++|++||.+.+ ++ +..++||.|+.|+..|++.+....++..+|..
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34566899997656 799999999998 56 88999999999999999998642112345764
No 93
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.82 E-value=0.0018 Score=44.05 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=45.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CCCcceecchhccccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQEEAYGLTAASTLLI 105 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~~~~y~~t~~s~~L~ 105 (131)
++++..||++.+|+ ++..+.+.|+.|...|++++.... +..-.|.+|+.++.+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 68999999999999 999999999999999999986521 1123699999987654
No 94
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.82 E-value=0.0016 Score=42.84 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+.
T Consensus 32 ~~~~iL~~l~~-~~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLK-DAPLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-HCSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 44557777765 368999999999999 999999999999999999876421 11 23488999988666
No 95
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.81 E-value=0.00078 Score=44.59 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=51.7
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 34 ~~~~iL~~l~~-~~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 34 AQFDILQKIYF-EGPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHHH-HCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 34557777765 368999999999999 999999999999999999986421 10 124889999886553
No 96
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.81 E-value=0.0013 Score=43.53 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=49.8
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
..++.|...|.. .+ +|..|||+.+|+ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 38 ~~~~~iL~~l~~-~~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~ 106 (146)
T 3tgn_A 38 NTQEHILMLLSE-ES-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE 106 (146)
T ss_dssp HHHHHHHHHHTT-CC-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred HHHHHHHHHHHh-CC-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence 355667778875 34 999999999999 999999999999999999976421 11 245889998876553
No 97
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0092 Score=39.39 Aligned_cols=66 Identities=6% Similarity=0.086 Sum_probs=51.1
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|... ++ |..+||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 345677778764 34 99999999999 999999999999999999986421 00 114899999886654
No 98
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.80 E-value=0.00073 Score=44.83 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=52.7
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
..++.|+..|... +++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+...
T Consensus 37 ~~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 37 PEQWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 3455577777653 78999999999999 999999999999999999976422 11 2348899998866543
No 99
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.77 E-value=0.00097 Score=42.83 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=54.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccC-CC-C
Q 040869 16 QAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-E 92 (131)
Q Consensus 16 ~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~ 92 (131)
...++++..+.|... |...|. .++++..||++.+ |+ ++..+.+.|+.|...|++...... ++ .
T Consensus 15 ~~~~l~~l~~~~~~~---------IL~~L~--~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~r~ 80 (107)
T 2fsw_A 15 VRKSMQIFAGKWTLL---------IIFQIN--RRIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVPPR 80 (107)
T ss_dssp HHHHHHHHTSSSHHH---------HHHHHT--TSCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred HHHHHHHHcCccHHH---------HHHHHH--hCCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 344455555544433 334454 3689999999999 49 999999999999999999976421 11 1
Q ss_pred cceecchhccccc
Q 040869 93 EAYGLTAASTLLI 105 (131)
Q Consensus 93 ~~y~~t~~s~~L~ 105 (131)
-.|.+|+.++.+.
T Consensus 81 ~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 81 VEYSLTPLGEKVL 93 (107)
T ss_dssp EEEEECHHHHTTH
T ss_pred eEEEECccHHHHH
Confidence 3599999987655
No 100
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.77 E-value=0.0082 Score=39.88 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=51.4
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 42 ~~~iL~~l~~-~~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 42 QRAILEGLSL-TPGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HHHHHHHHHH-STTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence 4457777765 358999999999999 999999999999999999986421 11 124789998876543
No 101
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.76 E-value=0.00091 Score=42.45 Aligned_cols=53 Identities=8% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+|.--.++.|+..+.. .++.|+.|||+.+|+ ++..+.+.|+.|... ++....
T Consensus 22 ~aL~~~~Rl~IL~~l~~-~~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYK-HKALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp HHHCSHHHHHHHHHHHH-HSCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEE
T ss_pred HHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheE
Confidence 34445567778855543 368999999999999 999999999999999 988654
No 102
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=96.74 E-value=0.0019 Score=43.79 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
+. |..+||+..++ ++..|.++|+.|...|++.... |.|.|.++.-
T Consensus 23 ~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r---G~GGy~Lar~ 67 (145)
T 1xd7_A 23 KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA---GVPGASLKKD 67 (145)
T ss_dssp CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS---SSSSCEESSC
T ss_pred CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec---CCCCceecCC
Confidence 35 99999999999 9999999999999999998765 1455766543
No 103
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.74 E-value=0.0014 Score=41.10 Aligned_cols=48 Identities=13% Similarity=0.251 Sum_probs=41.1
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.++.|+..|.. .+++|..|||+.+|+ ++..+.|.++.|...|++....
T Consensus 21 ~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLE-RGGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-HCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45567777764 368999999999999 9999999999999999999764
No 104
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.0011 Score=44.04 Aligned_cols=67 Identities=6% Similarity=0.030 Sum_probs=52.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|... +++|..+||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 455577777653 57999999999999 999999999999999999975421 11 234899999886653
No 105
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.74 E-value=0.0086 Score=40.89 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=51.9
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++.+.... ++ ...+.+|+.++.+..
T Consensus 46 ~~~~iL~~L~~-~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 46 PQFRTLVILSN-HGPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHH-HCSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 34557777765 358999999999999 999999999999999999985421 11 123789998876554
No 106
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=96.71 E-value=0.0018 Score=41.39 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=51.2
Q ss_pred HHhChHHHHHhCCCCCCHHHHHh-hcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccccC
Q 040869 36 IELGIADIIHSHGRAITLSELVS-ALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~-~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
.++.|+-.|++.+ +.|+.+||+ ..++ +...+.|=++.|...|++...+ ++ +.+|+.++.+...
T Consensus 17 ~QfsiL~~L~~~~-~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~----~D-l~LT~~G~~~l~~ 80 (95)
T 1bja_A 17 KTATILITIAKKD-FITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG----DG-LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHHHHHST-TBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET----TE-EEECHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC----CC-eeeCHhHHHHHHH
Confidence 3455677777754 999999999 9999 9999999999999999999332 44 8999998865543
No 107
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.70 E-value=0.001 Score=44.43 Aligned_cols=67 Identities=7% Similarity=0.115 Sum_probs=44.6
Q ss_pred HhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|...+ +++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 344666776543 78999999999999 999999999999999999876421 11 234789999886654
No 108
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.68 E-value=0.0062 Score=41.20 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=51.6
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
++.|+..|... +++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+...
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 34477777653 58999999999999 999999999999999999986432 11 2348899998866543
No 109
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.67 E-value=0.0011 Score=44.78 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=52.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 53 ~~~~iL~~l~~-~~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 121 (162)
T 3cjn_A 53 AKMRALAILSA-KDGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD 121 (162)
T ss_dssp HHHHHHHHHHH-SCSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 34557777775 468999999999999 999999999999999999976421 11 234889998876553
No 110
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=96.67 E-value=0.0017 Score=41.55 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
+++++..+||+.+++ +...|.|++..|...|++......++.+...+|+.++.+.
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 478999999999999 9999999999999999999854334455678888877543
No 111
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.67 E-value=0.0016 Score=43.69 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=52.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+...
T Consensus 48 ~~~~iL~~l~~-~~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWE-TDERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHH-SCSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 34557777775 468999999999999 999999999999999999986421 11 1248899998866544
No 112
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.66 E-value=0.0013 Score=41.38 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++++|..|||+.+|+ ++..+.|+++.|...|++.+..
T Consensus 34 ~~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 34 EKPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 478999999999999 9999999999999999999865
No 113
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.66 E-value=0.0012 Score=42.33 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=40.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.++.|+..+...|.++|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 345677777433557999999999999 999999999999999999876
No 114
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=96.65 E-value=0.0028 Score=43.02 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=52.1
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
++.|.-.|...+++.+..|||+.+++ ++..+.|+++.|...|++.+.... |+ .-...+|+.++.+...
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~ 102 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQ 102 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHH
Confidence 33456666655667899999999999 999999999999999999976532 21 1247889998866543
No 115
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.65 E-value=0.0015 Score=42.88 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=51.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.++++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 36 ~~~iL~~l~~-~~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRC-AACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHH-HSSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 4446666764 368999999999999 999999999999999999986421 11 123889999886654
No 116
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.63 E-value=0.0046 Score=40.87 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=50.0
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
+.|...|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+...
T Consensus 39 ~~vL~~l~~-~~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (140)
T 3hsr_A 39 YIVLMAIEN-DEKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSP 106 (140)
T ss_dssp HHHHHHSCT-TCEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHH
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHH
Confidence 335555654 468999999999999 999999999999999999976422 11 2358899998866543
No 117
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.61 E-value=0.0012 Score=44.28 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccC-CC-C
Q 040869 16 QAQLYKLMFSHLSSMSLKCAIELGIADIIHSHGRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-E 92 (131)
Q Consensus 16 ~~~l~~~~~~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~ 92 (131)
...++++..+.|... |...|. .++++..||++.+ |+ ++..+.+.|+.|...|++.+.... ++ .
T Consensus 25 ~~~~l~~l~~~w~l~---------IL~~L~--~g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d~r~ 90 (131)
T 1yyv_A 25 SREVLKHVTSRWGVL---------ILVALR--DGTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVVPPH 90 (131)
T ss_dssp HHHHHHHHHSHHHHH---------HHHHGG--GCCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSCE
T ss_pred HHHHHHHHcCCcHHH---------HHHHHH--cCCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCCCCe
Confidence 344555555555543 333344 3689999999999 79 999999999999999999976421 11 1
Q ss_pred cceecchhccccc
Q 040869 93 EAYGLTAASTLLI 105 (131)
Q Consensus 93 ~~y~~t~~s~~L~ 105 (131)
-.|.+|+.++.+.
T Consensus 91 ~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 91 VEYSLTPLGEQVS 103 (131)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECccHHHHH
Confidence 3599999987654
No 118
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.61 E-value=0.0018 Score=43.55 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=52.7
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
..++.|+..|... +++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 44 ~~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 44 TTELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 3456677778653 58999999999999 999999999999999999986421 11 124788998886654
No 119
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=96.60 E-value=0.0042 Score=43.10 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=39.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
++++|..+||+.+++ ++..+.++|..|...|++..... ..|.|.+..-
T Consensus 26 ~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~ 73 (162)
T 3k69_A 26 DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG--KNGGYQLDLA 73 (162)
T ss_dssp TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS--TTCEEECCSC
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC--CCCCeEecCC
Confidence 478999999999999 99999999999999999976541 1356876643
No 120
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.59 E-value=0.0015 Score=43.43 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=50.9
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 44 ~~~iL~~l~~-~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 44 QFVALQWLLE-EGDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp HHHHHHHHHH-HCSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence 4446777765 368999999999999 999999999999999999975421 11 124889998886654
No 121
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.59 E-value=0.0016 Score=43.06 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=51.1
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+..
T Consensus 31 ~~~iL~~l~~-~~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 98 (144)
T 1lj9_A 31 QYLYLVRVCE-NPGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP 98 (144)
T ss_dssp HHHHHHHHHH-STTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHH-CcCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence 3446777765 358999999999999 999999999999999999986421 11 123789999886554
No 122
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.57 E-value=0.0016 Score=43.03 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 38 ~~~~iL~~l~~-~~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (142)
T 2bv6_A 38 PQFLVLTILWD-ESPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP 106 (142)
T ss_dssp HHHHHHHHHHH-SSEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence 34557777775 357999999999999 999999999999999999976421 11 124788998876554
No 123
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.56 E-value=0.0013 Score=40.01 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=41.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALD----IQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~----~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+..|...|.. .+++|+.||++.++ + ++..+.|+|+.|...|++....
T Consensus 10 ~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~---s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK-HSSINTNEVIKELSKTSTW---SPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT-SSSEEHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHhhcCCc---cHHHHHHHHHHHHHCCCeEEEe
Confidence 45567788875 57899999999997 5 7889999999999999999875
No 124
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.54 E-value=0.0012 Score=43.35 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...|.+|+.++.+..
T Consensus 37 ~~~~iL~~l~~-~~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 37 QQWRVIRILRQ-QGEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHHH-HCSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 35557777765 357999999999999 999999999999999999876321 10 123788998886553
No 125
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=96.52 E-value=0.00087 Score=52.01 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=47.8
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc-cccc
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST-LLIK 106 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~-~L~~ 106 (131)
+||..| + +|.|+.|||.++|. ++..+.++|+.|++.|+++.. ++ |.+|+.+. +|.+
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-----DG-VKLTEKGEELVAE 103 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-----SS-SEECHHHHHHHHH
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHHHHh
Confidence 778888 3 58999999999999 999999999999999999864 44 99999766 4443
No 126
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.49 E-value=0.0014 Score=44.85 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHhChHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|...|... ++++|..|||+.+++ ++..+.|+++.|...|++...... |+ .-.+.+|+.++.+..
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 345567777654 368999999999999 999999999999999999986421 10 124788998886654
No 127
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=96.49 E-value=0.0024 Score=42.30 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=52.6
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
.++.|+..|.. .+++|..+||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+...
T Consensus 41 ~~~~iL~~l~~-~~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWE-HETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHH-HSEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence 44556777765 358999999999999 999999999999999999976421 11 2237899998876654
No 128
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.48 E-value=0.014 Score=38.90 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=50.2
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|...|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 42 ~q~~iL~~l~~-~~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 42 SQYLVMLTLWE-ENPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHHHH-SSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 34556777765 478999999999999 999999999999999999976421 11 234889998886653
No 129
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.47 E-value=0.0018 Score=43.85 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=50.9
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-CcceecchhccccccC
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIKD 107 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~~ 107 (131)
+.|+..|.. .+++|..|||+.+++ ++..+.|+++.|...|++...... ++ ...+.+|+.++.+...
T Consensus 53 ~~vL~~l~~-~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 53 FPFLMRLYR-EDGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHHH-SCSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 336666765 468999999999999 999999999999999999976422 11 1247899998866543
No 130
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.44 E-value=0.0041 Score=41.85 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=41.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|.+.|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 6 ~d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 35568888875 478999999999999 999999999999999999864
No 131
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=96.43 E-value=0.002 Score=43.81 Aligned_cols=62 Identities=10% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCC--CCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDI--QPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~--~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
..+..|++.|.+.+ +.|++||.+.+.- ...+..++||.|+.|+..|++.+....++..+|..
T Consensus 19 ~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 35566888887655 8999999998732 11188899999999999999998653222335764
No 132
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.42 E-value=0.0042 Score=41.98 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=41.2
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 8 ~~~~iL~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAA-DGRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 45667888875 468999999999999 999999999999999999764
No 133
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=96.39 E-value=0.0015 Score=41.86 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=40.4
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCC-CCCcchHHHHHHHhhcCCceeecc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQ-PTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~-~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+..|...|.+ .+++|+.||+++++.. +-++..+.|+|+.|...|++.+..
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4557888875 4689999999999751 115789999999999999999875
No 134
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=96.38 E-value=0.0053 Score=42.38 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=52.1
Q ss_pred HHhChHHHHHhCC-CCCCHHHHHhhcC-CCCCCcchHHHHHHHhhcCCceeecccCC---CC----cceecchhccccc
Q 040869 36 IELGIADIIHSHG-RAITLSELVSALD-IQPTKTTGLFRLMRLLVHSSCFNKTKVNG---QE----EAYGLTAASTLLI 105 (131)
Q Consensus 36 ~~L~ifd~l~~~~-~~~s~~eLA~~~~-~~~~~~~~l~RlLr~L~~~gl~~~~~~~~---~~----~~y~~t~~s~~L~ 105 (131)
.++.|+..|.... +..|+.||++.++ + +...++|-|+.|+..|++.+....+ +. ..|.+|+.++.+.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 6677788776443 5689999999999 9 9999999999999999999653210 11 2699999998443
No 135
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.37 E-value=0.0025 Score=45.95 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
+++++..+||+.+++ ++..+.++++.|...|++.... .+.+.+|+.++.+..
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~----~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK----KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec----CCCeEECHHHHHHHH
Confidence 578999999999999 9999999999999999999886 678999999886653
No 136
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.36 E-value=0.0033 Score=42.39 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 46678888875 468999999999999 999999999999999999864
No 137
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=96.35 E-value=0.0049 Score=42.70 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=45.7
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCC----CCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDI----QPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~----~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
.-+.-|++.|.+.++++|++||.+.+.- ...+..++||.|..|+..|++.+....++..+|...
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 3566789999876789999999887621 011788999999999999999987422223457654
No 138
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.33 E-value=0.0013 Score=45.59 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=50.7
Q ss_pred HhChHHHHHhCCCC--CCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSHGRA--ITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~--~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|+..|...++| +|..|||+.+++ ++..+.|+++.|...|++...... ++ .-.+.+|+.++.+..
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 45577777654443 999999999999 999999999999999999976421 11 134889999886654
No 139
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.32 E-value=0.0019 Score=42.45 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=51.5
Q ss_pred HhChHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 37 ELGIADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
++.|...|... ++++|..|||+.+++ ++..+.|+++.|...|++...... |+ ...+.+|+.++.+..
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 44466667653 268999999999999 999999999999999999985422 11 234789998886654
No 140
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.32 E-value=0.0049 Score=42.18 Aligned_cols=47 Identities=13% Similarity=0.252 Sum_probs=41.3
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 11 ~~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQE-NGRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 35568888876 468999999999999 999999999999999999864
No 141
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=96.26 E-value=0.0041 Score=43.55 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=54.5
Q ss_pred HHHHhChHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 34 CAIELGIADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 34 ~a~~L~ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
...++.|...|... ++++|..+||+.+++ ++..+.|+++.|...|++...... +. ...+.+|+.++.+..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 44566677788753 368999999999999 999999999999999999986432 11 134789998886654
No 142
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=96.23 E-value=0.0013 Score=42.69 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=47.6
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHhhcCCceeecccCCCCcc---eecchhccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALD----IQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEA---YGLTAASTLLI 105 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~----~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~---y~~t~~s~~L~ 105 (131)
++.|...|.. .+++|..|||+.++ + ++..+.|+++.|...|++..... +.+ +.+|+.++.+.
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHH
Confidence 3455666654 46899999999999 6 68999999999999999998652 222 36788777554
No 143
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=96.22 E-value=0.0057 Score=43.93 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=51.0
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC--C-C-Ccceecchhcc
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN--G-Q-EEAYGLTAAST 102 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~-~-~~~y~~t~~s~ 102 (131)
.+|.--.++.|...|.. +|+|..|||+.+|+ ++..+.+.|+.|...|++...... . + .-.|.+|+-..
T Consensus 10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 45555667777877863 78999999999999 999999999999999999975421 0 1 12366666543
No 144
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0059 Score=41.20 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=41.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 10 ~d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 45578888876 578999999999999 999999999999999999864
No 145
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=96.16 E-value=0.0073 Score=42.49 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc-eeecccCCCCcceecchhc
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSC-FNKTKVNGQEEAYGLTAAS 101 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl-~~~~~~~~~~~~y~~t~~s 101 (131)
.--...|.+.|.+.++++|..|||+++|+ +.+.++|=++.|...|+ +... .+.|..++..
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~~~ 80 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-----TTEEECCTTT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-----CCEEEECCcc
Confidence 34556788889765578999999999999 99999999999999998 7653 4557776644
No 146
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.13 E-value=0.0054 Score=43.43 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 43 IIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 43 ~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+.+.+.|.|..|||+.+|+ +...++|.|+.|...|++....
T Consensus 17 ~~~~~g~~~s~~eia~~lgl---~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRI---TPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECC-
T ss_pred HHHHhCCCCCHHHHHHHcCC---CcHHHHHHHHHHHHCCCEEecC
Confidence 34444679999999999999 7789999999999999998764
No 147
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.12 E-value=0.0059 Score=41.30 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 9 ~d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 35567888876 478999999999999 999999999999999999864
No 148
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=96.09 E-value=0.005 Score=41.15 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALD----IQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~----~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+..|..+|....+++|..||++.++ + ++..+.|+++-|...|++....
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45667788875346899999999997 7 8899999999999999999875
No 149
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.09 E-value=0.0075 Score=38.02 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred HhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 37 ELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 37 ~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++.|+..|..++ ..++..|||+++++ +...+.|+|+.|...|++.+..
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 345677776533 47999999999999 9999999999999999999653
No 150
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=96.07 E-value=0.0078 Score=41.88 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=41.3
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 18 ~d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKK-DARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 45578888876 468999999999999 999999999999999999754
No 151
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=96.06 E-value=0.0054 Score=41.48 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=41.3
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 8 ~~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 45668888876 468999999999999 999999999999999999864
No 152
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.06 E-value=0.0022 Score=47.23 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=52.2
Q ss_pred HHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee-cccCC--C--Ccceecchhcc
Q 040869 29 SMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK-TKVNG--Q--EEAYGLTAAST 102 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~-~~~~~--~--~~~y~~t~~s~ 102 (131)
..+|.--.++.|+..|. .+|+|..|||+.+|+ ++..+.+.|+.|...|++.. ..... | ...|.+|+.+.
T Consensus 6 lkaL~~~~R~~IL~~L~--~g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLT--CMECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHT--TTTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 34555567788888887 378999999999999 99999999999999999997 33100 0 11388777543
No 153
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=96.04 E-value=0.0057 Score=40.63 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=40.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
+..|...|.+ ++++|..|||+++|+ ++..+.|.++.|...|++...
T Consensus 6 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEecc
Confidence 5567778875 468999999999999 999999999999999999754
No 154
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.91 E-value=0.0036 Score=42.14 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=48.8
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
|...|... ++++|..|||+.+++ ++..+.|+++.|...|++.+.... |+ .-...+|+.++.+..
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 44555432 368999999999999 999999999999999999986532 11 123788999886654
No 155
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.90 E-value=0.0076 Score=41.40 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=42.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+..|.+.|.+ ++++|..|||+++|+ ++..+.|-++.|...|++...
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 46678888975 578999999999999 999999999999999999854
No 156
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.89 E-value=0.011 Score=42.00 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.++....+..|...|. .+++|..|||+.+|+ ++..+.|.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~--~~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLR--NKEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHT--TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHH--cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3444566778898897 368999999999999 999999999999999999876
No 157
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.86 E-value=0.007 Score=34.92 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.6
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK 85 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~ 85 (131)
+-.|.+.|..++|-+.++..|++.|+ +++.+..+||.|...|++.-
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeec
Confidence 44578888888899999999999999 99999999999999999874
No 158
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.85 E-value=0.0091 Score=41.57 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=42.1
Q ss_pred HHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 35 AIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 35 a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
..+..|...|.+ ++.+|..|||+++|+ ++..+.|-++.|...|++...
T Consensus 27 ~~d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 27 EIDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 356678888876 468999999999999 999999999999999999864
No 159
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.81 E-value=0.0048 Score=44.07 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=49.9
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
++.|...|... +++|..+||+.+++ ++..+.|+++.|...|++...... |+ .-.+.+|+.++.+.
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 44466777643 58999999999999 999999999999999999986421 11 12578999887554
No 160
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=95.76 E-value=0.0064 Score=41.02 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=42.8
Q ss_pred hChHHHHHhC----CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCC-Ccceecchhcccccc
Q 040869 38 LGIADIIHSH----GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 38 L~ifd~l~~~----~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~-~~~y~~t~~s~~L~~ 106 (131)
+.|...|... ++++|..|||+.+++ ++..+.|+++.|...|++....+.|+ .-...+|+.++.+..
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~ 106 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQ 106 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHH
Confidence 3455556432 257999999999999 99999999999999999965432121 134788998886543
No 161
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=95.75 E-value=0.028 Score=36.55 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=53.4
Q ss_pred HHHHHHhChHHHHHhCCCCCCHHHHHhhcC--------CCCCCc-chHHHHHHHhhcCCceeecccC-CC--Ccceecch
Q 040869 32 LKCAIELGIADIIHSHGRAITLSELVSALD--------IQPTKT-TGLFRLMRLLVHSSCFNKTKVN-GQ--EEAYGLTA 99 (131)
Q Consensus 32 L~~a~~L~ifd~l~~~~~~~s~~eLA~~~~--------~~~~~~-~~l~RlLr~L~~~gl~~~~~~~-~~--~~~y~~t~ 99 (131)
++-..++-|...|.. +|.+..||++.+. + ++ ..++++|+.|...|++...... ++ ...|.+|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 445567777888874 7899999999983 6 88 9999999999999999875321 11 23599999
Q ss_pred hcccccc
Q 040869 100 ASTLLIK 106 (131)
Q Consensus 100 ~s~~L~~ 106 (131)
.++.+..
T Consensus 85 ~G~~~l~ 91 (118)
T 2esh_A 85 QGKLYLR 91 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9985543
No 162
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.62 E-value=0.0091 Score=46.26 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 26 HLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 26 ~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+..+++++...+..|++.|. .+++|-.|||+++|+ .+..+.++++.|...|++.+..
T Consensus 11 ~~~~~~~~~~~~~~il~~l~--~~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 11 HHMPKSVRAENISRILKRIM--KSPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp -----------CCCSHHHHH--HSCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred ccCchhHHHHHHHHHHHHHH--cCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec
Confidence 34578888888889999998 479999999999999 9999999999999999999864
No 163
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=95.54 E-value=0.032 Score=36.49 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhc------CCCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecchh
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSAL------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLTAA 100 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t~~ 100 (131)
.++-.+++-|..+|.. +|.+.-||++.+ ++ ++..|+++|+.|...|++...... ++ ...|.+|+.
T Consensus 7 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEA 81 (117)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHH
T ss_pred HHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHH
Confidence 3444556666667774 789999999998 67 889999999999999999875321 11 235999999
Q ss_pred ccccc
Q 040869 101 STLLI 105 (131)
Q Consensus 101 s~~L~ 105 (131)
++...
T Consensus 82 G~~~l 86 (117)
T 4esf_A 82 GRQEL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98544
No 164
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=95.52 E-value=0.019 Score=38.10 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=41.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-C-C--Ccceecchhcccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-G-Q--EEAYGLTAASTLL 104 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~-~--~~~y~~t~~s~~L 104 (131)
...|.++||+++|+ ++..+.|+++.|...|++...... + | ...|.++|+-.-|
T Consensus 50 ~~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL 106 (128)
T 2vn2_A 50 LFPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKL 106 (128)
T ss_dssp SSCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHH
Confidence 34799999999999 999999999999999999986432 1 1 1469999886544
No 165
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=95.50 E-value=0.0082 Score=43.42 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
+++|..++|+++++ ++..+.|.++.|...|+|.+.... ....+.+|+.++.+..
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHH
Confidence 56899999999999 999999999999999999987310 1356899999986654
No 166
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=95.27 E-value=0.016 Score=41.95 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 51 ITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.+..+||+.+++ ++..+.++++.|...|++.... ...+.+|+.++.+..
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG----DRHLELTEKGRALAI 73 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC----CccEEECHHHHHHHH
Confidence 344999999999 9999999999999999999876 567999999886543
No 167
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.22 E-value=0.014 Score=43.07 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=52.2
Q ss_pred HHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhcccccc
Q 040869 36 IELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~~ 106 (131)
.++.|...|...+ +++|..|||+.+++ ++..+.|+++-|...|++.+.... |. .-...+|+.++.+..
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHH
Confidence 3445677777554 36999999999999 999999999999999999986532 21 123678888886654
No 168
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=95.13 E-value=0.012 Score=38.11 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=40.7
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCC-CCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQ-PTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~-~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+..|...|.. .+++|..|||+.++.. +-++..+.++++-|...|++....
T Consensus 11 ~q~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 35567777776 3689999999999730 017889999999999999999875
No 169
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.08 E-value=0.06 Score=35.00 Aligned_cols=72 Identities=8% Similarity=0.184 Sum_probs=53.0
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceec
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSAL--------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGL 97 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~--------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~ 97 (131)
..++-.+++-|..+|.+ +|.+..||.+.+ ++ ++..++++|+.|...|++...... ++ ...|.+
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34445566667777774 789999999887 56 889999999999999999875311 11 234999
Q ss_pred chhcccccc
Q 040869 98 TAASTLLIK 106 (131)
Q Consensus 98 t~~s~~L~~ 106 (131)
|+.++....
T Consensus 82 T~~G~~~l~ 90 (116)
T 3f8b_A 82 TEIGHENMR 90 (116)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999985443
No 170
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=94.97 E-value=0.037 Score=43.03 Aligned_cols=52 Identities=6% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 32 LKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 32 L~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++..-+..|++.|.+ .+++|-.|||+++|+ .+..+.++++.|...|++.+..
T Consensus 13 ~r~~n~~~il~~l~~-~~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQ-LGPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHHS-SCSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHhHHHHHHHHHHH-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence 455556668888985 579999999999999 9999999999999999999853
No 171
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.94 E-value=0.009 Score=42.03 Aligned_cols=71 Identities=25% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcC-CCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecchhccc
Q 040869 29 SMSLKCAIELGIADIIHSHGRAITLSELVSALD-IQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLTAASTL 103 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~-~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t~~s~~ 103 (131)
..+|.--+++.|+..|. +++.|+.|||+.++ + +...+.+-|+.|...|+++..... .| ...|.+++-+..
T Consensus 17 ~~~La~P~Rl~il~~L~--~~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLI--GRSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHTTSHHHHHHHHHTT--TSCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 34555668889999997 47999999999996 8 888999999999999999854311 01 235777776544
Q ss_pred c
Q 040869 104 L 104 (131)
Q Consensus 104 L 104 (131)
+
T Consensus 92 ~ 92 (182)
T 4g6q_A 92 A 92 (182)
T ss_dssp S
T ss_pred C
Confidence 4
No 172
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=94.91 E-value=0.039 Score=31.46 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=29.1
Q ss_pred HHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCce
Q 040869 41 ADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCF 83 (131)
Q Consensus 41 fd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~ 83 (131)
...+.. .+++|++||++.+ ++ +..+++|-|. ..|++
T Consensus 11 ~~ll~~-~~~~t~~el~~~l~~~~~~v---s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 11 REIITS-NEIETQDELVDMLKQDGYKV---TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHH-SCCCSHHHHHHHHHHTTCCC---CHHHHHHHHH---HHTCE
T ss_pred HHHHHc-CCCCCHHHHHHHHHHhCCCc---CHHHHHHHHH---HcCCE
Confidence 344543 5789999999999 99 9999999999 45777
No 173
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=94.83 E-value=0.016 Score=36.61 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=39.5
Q ss_pred HHHHHHhChHH-HHHhCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 32 LKCAIELGIAD-IIHSHGRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 32 L~~a~~L~ifd-~l~~~~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+.-.++..|.+ .+. .+..+ |..+||+.+|+ +...+++-++.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~-~g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELA-PGDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCC-TTSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCC-CcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 33334444444 233 24566 99999999999 9999999999999999998765
No 174
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.83 E-value=0.037 Score=35.59 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=35.7
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcC
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHS 80 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~ 80 (131)
.+.++||+..|.+ +.+|..|||+.+|+ +...+.|+=|+|...
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~~l 85 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLKAA 85 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHHHc
Confidence 4567899998874 67999999999999 999999998887543
No 175
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=94.83 E-value=0.036 Score=37.26 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecchhcccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLTAASTLL 104 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t~~s~~L 104 (131)
...|.++||+++|+ ++..+.|+++.|...|++...... +| ...|.++|+-.-|
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ekL 106 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGKL 106 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHHH
Confidence 56899999999999 999999999999999999984221 11 1479999986544
No 176
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=94.82 E-value=0.024 Score=41.00 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=43.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.+.+..+||+++++ ++..+.++++.|...|++.... ...+.+|+.++.+..
T Consensus 23 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 23 VTPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS----DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----TSBEEECHHHHHHHH
T ss_pred CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC----CCCeEECHHHHHHHH
Confidence 34456999999999 9999999999999999999876 577999999886553
No 177
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=94.76 E-value=0.039 Score=36.07 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=53.9
Q ss_pred HHHHHHHHhChHHHHHhCCCCCCHHHHHhhcC------CCCCCcchHHHHHHHhhcCCceeeccc-C-CC--Ccceecch
Q 040869 30 MSLKCAIELGIADIIHSHGRAITLSELVSALD------IQPTKTTGLFRLMRLLVHSSCFNKTKV-N-GQ--EEAYGLTA 99 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~------~~~~~~~~l~RlLr~L~~~gl~~~~~~-~-~~--~~~y~~t~ 99 (131)
..++-.+++-|...|.. +|.+..||++.+. + ++..+++.|+.|...|++..... . .+ ...|.+|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34455566777778874 7899999999886 6 77899999999999999986532 1 11 23599999
Q ss_pred hcccccc
Q 040869 100 ASTLLIK 106 (131)
Q Consensus 100 ~s~~L~~ 106 (131)
.++....
T Consensus 84 ~G~~~l~ 90 (117)
T 3elk_A 84 AGKKFLC 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9985443
No 178
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=94.62 E-value=0.046 Score=38.05 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHhhcCCceeecccC-CC---Ccceecchhccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSAL--------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ---EEAYGLTAASTL 103 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~--------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~---~~~y~~t~~s~~ 103 (131)
+++-|...|.. +|.+..||++.+ ++ ++..+++.|+-|...|++...... ++ ...|.+|+.++.
T Consensus 3 l~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 3 LPHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence 45567777874 799999999998 46 889999999999999999875422 11 235999999873
No 179
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=94.39 E-value=0.032 Score=35.79 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=49.9
Q ss_pred HHHHhChHHHHHhCCCCCCHHHHHhhc----CCCCCCcchHHHHHHHhhcCCceeecccC-CCC--cceecchhccccc
Q 040869 34 CAIELGIADIIHSHGRAITLSELVSAL----DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQE--EAYGLTAASTLLI 105 (131)
Q Consensus 34 ~a~~L~ifd~l~~~~~~~s~~eLA~~~----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~~--~~y~~t~~s~~L~ 105 (131)
-..++-|...|.. +|.+..+|++.+ ++ ++..++++|+.|...|++...... ++. ..|.+|+.++...
T Consensus 8 g~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 8 LLIEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 3456667777774 688888888775 77 899999999999999999875321 111 2499999998544
No 180
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=94.37 E-value=0.062 Score=35.03 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=51.9
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhc------CCCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecchh
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSAL------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLTAA 100 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t~~ 100 (131)
.++-.+++-|..+|.+ +|.+.-||++.+ ++ ++..++++|+-|...|+++..... ++ ...|.+|+.
T Consensus 9 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~ 83 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSS 83 (116)
T ss_dssp HHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHH
T ss_pred HHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence 3444455666777774 789999999998 56 889999999999999999875321 11 235999999
Q ss_pred ccccc
Q 040869 101 STLLI 105 (131)
Q Consensus 101 s~~L~ 105 (131)
++...
T Consensus 84 G~~~l 88 (116)
T 3hhh_A 84 GEAEL 88 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98544
No 181
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=94.33 E-value=0.045 Score=41.70 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
+..|.+.|.+ ++++|.+|||+++++ ++..++|-++.|...|+..+... +..|.+.+
T Consensus 7 ~~~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~---g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP---GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET---TTEEECSS
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec---CCCcEEee
Confidence 4557788863 578999999999999 99999999999999998865431 34577654
No 182
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=94.03 E-value=0.035 Score=37.70 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=53.3
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSAL--------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLT 98 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~--------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t 98 (131)
.++-..++-|...|.. +|++..||++.+ ++ ++..|+++|+.|...|++...... ++ ...|.+|
T Consensus 37 ~~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp SGGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HhcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 3444567777788874 689999999888 47 889999999999999999875321 11 2359999
Q ss_pred hhcccccc
Q 040869 99 AASTLLIK 106 (131)
Q Consensus 99 ~~s~~L~~ 106 (131)
+.++.+..
T Consensus 112 ~~G~~~l~ 119 (145)
T 1xma_A 112 PEGIKYYK 119 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99986543
No 183
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.83 E-value=0.064 Score=42.10 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 32 LKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 32 L~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++..-+..|++.|.+ .+++|..|||+.+|+ .+..+.++++.|...|++.+..
T Consensus 36 ~r~~n~~~il~~l~~-~~~~sr~ela~~~gl---s~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 36 IKQINAGRVYKLIDQ-KGPISRIDLSKESEL---APASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHH-HCSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHH-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 566667778999975 479999999999999 9999999999999999999864
No 184
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=93.62 E-value=0.038 Score=43.62 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=50.2
Q ss_pred HhChHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 37 ELGIADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 37 ~L~ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
+..|...|.+. ++++|..|||+++++ ++..+.|+++.|...|++.+.... |. .-...+|+.++.+.
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 34467777653 268999999999999 999999999999999999986532 21 12367788777654
No 185
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.42 E-value=0.039 Score=33.56 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=35.6
Q ss_pred HHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 42 DIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 42 d~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+.|.. ++..|+.+||+++|+ +...+.|+|-.|...|.+...+
T Consensus 22 ~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 22 LSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 34543 455999999999999 9999999999999999998764
No 186
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.39 E-value=0.15 Score=33.65 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc
Q 040869 33 KCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH 79 (131)
Q Consensus 33 ~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~ 79 (131)
..+-++.|+..|.+ ..|..|||+.+|+ +...+.|+-|.|..
T Consensus 61 aLs~R~eV~klL~~---G~syreIA~~~g~---S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 61 SLSQRLQVAKMIKQ---GYTYATIEQESGA---STATISRVKRSLQW 101 (119)
T ss_dssp HHHHHHHHHHHHHH---TCCHHHHHHHHCC---CHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 45566889999984 3999999999999 99999999998853
No 187
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=93.29 E-value=0.065 Score=34.83 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=49.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcC------CCCCCcchHHHHHHHhhcCCceeecccC--CC--Ccceecchhccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALD------IQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQ--EEAYGLTAASTLLI 105 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~------~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~--~~~y~~t~~s~~L~ 105 (131)
+++-|..+|.. +|.+.-||++.+. + ++..|+++|+.|...|++...... ++ ...|.+|+.++...
T Consensus 10 l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 10 LEGCILYIISQ--EEVYGYELSTKLNKHGFTFV---SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHHHTTCTTC---CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 44556667763 7899999999884 6 889999999999999999865321 11 13499999998544
No 188
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=93.24 E-value=0.091 Score=40.17 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=46.9
Q ss_pred HhChHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccc
Q 040869 37 ELGIADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTL 103 (131)
Q Consensus 37 ~L~ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~ 103 (131)
+-.|.+.|.++ +.++|.+|||+++|+ +...+.+-++.|...|+.-+... +..|.+.+....
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv---Sr~aV~k~i~~L~~~G~~i~~~~---~~GY~L~~~~~~ 66 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI---SRTAVKKVIDQLKLEGCKIDSVN---HKGHLLQQLPDI 66 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEEET---TTEEEEEECCSS
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC---CHHHHHHHHHHHHhcCCeEEEeC---CCeEEEecCccc
Confidence 34577888532 469999999999999 99999999999999999665421 456887764333
No 189
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.15 E-value=0.057 Score=34.31 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 36 IELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 36 ~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-+.-|..+|..++ .++...||..++++ +...+.|+|+.|...|++.+..
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL---~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCEEEec
Confidence 3455777786544 57999999999999 9999999999999999999875
No 190
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.86 E-value=0.073 Score=39.22 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=50.4
Q ss_pred HhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-CC-Ccceecchhccccc
Q 040869 37 ELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ-EEAYGLTAASTLLI 105 (131)
Q Consensus 37 ~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~-~~~y~~t~~s~~L~ 105 (131)
+..|...|.+.+ +++|..|||+++++ ++..+.|+++-|...|++.+.... |. .-...+|+.++.+.
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 345666776543 57999999999999 999999999999999999986532 21 12367888887654
No 191
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=92.73 E-value=0.12 Score=36.98 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-++|-.+||..+|+ .+..+.|+++.|...|+++...
T Consensus 176 ~~~t~~~iA~~lG~---sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 176 MPLSQKSIGEITGV---HHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCeEeCC
Confidence 37899999999999 9999999999999999999764
No 192
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.64 E-value=0.35 Score=27.95 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 41 ADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 41 fd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
...|+....++|+.|+|+..|. +....+--|..|-+.|-+++. +.+|.+-|-
T Consensus 9 Lall~s~~QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKR-----sSRYrlkph 60 (68)
T 3i71_A 9 LALLTSVRQGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKR-----SSRYRLKPH 60 (68)
T ss_dssp HHHHHHCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----CCEEEECC-
T ss_pred HHHHHHHhccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhh-----ccccccCcc
Confidence 3445544578999999999999 888888899999999999987 578887664
No 193
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=92.27 E-value=0.19 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc
Q 040869 33 KCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH 79 (131)
Q Consensus 33 ~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~ 79 (131)
..+-++.|+..|.+ +.|..+|++.+|+ +...+.|+-|.|..
T Consensus 44 alaqR~~Ia~lL~~---G~SyreIa~~tG~---StaTIsRv~r~L~~ 84 (107)
T 3frw_A 44 SLSQRFEVAKMLTD---KRTYLDISEKTGA---STATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHHHHHHHT---TCCHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHCc---cHHHHHHHHHHHHc
Confidence 34567889999983 4999999999999 99999999998864
No 194
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=91.98 E-value=0.029 Score=43.09 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=0.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLL 104 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L 104 (131)
+..|...|.. .+++|..|||+++++ ++..++|.++.|...|+++... ....+|+.++.+
T Consensus 22 ~~~iL~~l~~-~~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-----~gi~LT~~G~~~ 80 (345)
T 2o0m_A 22 RFQILRNIYW-MQPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-----SGMTLTERGLEV 80 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-----cceEEcHHHHHH
Confidence 4557777764 468999999999999 9999999999999999997442 224556555533
No 195
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=91.96 E-value=0.15 Score=32.84 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=37.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
|..+ |..+||+.+|+ +...+++.++.|...|++.... +.|.|-..+
T Consensus 30 G~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~---~~G~~V~~~ 76 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR---GLGMLVKAG 76 (113)
T ss_dssp TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEECTT
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec---CCeEEEeCC
Confidence 3455 99999999999 9999999999999999998765 145554443
No 196
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=91.92 E-value=0.17 Score=38.12 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee-ecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN-KTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~-~~~ 87 (131)
.+++|..|||+++|+ +...++|.|..|...|+++ +..
T Consensus 19 ~~~~~~~ela~~l~v---S~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 19 EQDMTQAQIARELGI---YRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp TSCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEEec
Confidence 367999999999999 9999999999999999997 654
No 197
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=91.76 E-value=0.25 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
|..+ |..+||+.+|+ +...+++-++.|...|++.... |.|.|-..
T Consensus 25 G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~---g~G~~V~~ 70 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR---GIGMFVSA 70 (129)
T ss_dssp TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET---TTEEEECT
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec---CCEEEEec
Confidence 4456 99999999999 9999999999999999998765 14555443
No 198
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=91.66 E-value=0.25 Score=38.01 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHhCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 43 IIHSHGRAITLSELVSAL--DIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 43 ~l~~~~~~~s~~eLA~~~--~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.|.. ++|++..+||++. ++ ++.+++|-|..|...|++.+..
T Consensus 30 yl~~-~~pV~s~~La~~~~l~V---S~aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 30 YIEN-KKPVSSQRVLEVSNIEF---SSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp HHHH-CSCBCHHHHHHHSCCCS---CHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHc-CCCccHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEcc
Confidence 5554 6899999999999 88 8999999999999999999875
No 199
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=91.66 E-value=0.22 Score=35.76 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLI 105 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~ 105 (131)
+|++..+||+++|+ .++.+...++.|...|++... .+...+|+.++.++
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~-----~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSK-----QRGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEe-----CCCeEECHHHHHHH
Confidence 68999999999999 999999999999999999876 35678888887554
No 200
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=91.60 E-value=0.22 Score=32.76 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccC-CC--Ccceecch
Q 040869 28 SSMSLKCAIELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQ--EEAYGLTA 99 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~--~~~y~~t~ 99 (131)
....++-.+++-|..+|. +|.+--+|.+.+ ++ ++..++++|+-|...|++...... ++ ...|.+|+
T Consensus 14 ~~~l~~g~l~~~IL~lL~---~p~~GYei~~~l~~~~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~ 87 (123)
T 3ri2_A 14 VLELRRGTLVMLVLSQLR---EPAYGYALVKSLADHGIPI---EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTD 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHTT---SCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECH
T ss_pred HHHHHhCcHHHHHHHHHc---CCCCHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECH
Confidence 344455556666777675 678888888875 67 889999999999999999875311 11 23599999
Q ss_pred hccccc
Q 040869 100 ASTLLI 105 (131)
Q Consensus 100 ~s~~L~ 105 (131)
.++...
T Consensus 88 ~Gr~~l 93 (123)
T 3ri2_A 88 EGLRVL 93 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998544
No 201
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=91.43 E-value=0.19 Score=26.26 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=24.1
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCC
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSS 81 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~g 81 (131)
.+|..+||+.+|+ +...++|.++.....|
T Consensus 21 g~s~~~IA~~lgi---s~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKISR---SRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHTC---CHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHhhHHhcC
Confidence 5899999999999 9999999987554433
No 202
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=91.27 E-value=0.22 Score=31.60 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++.+ |..+||+.+|+ +...+++-++.|...|++....
T Consensus 40 g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 40 NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4455 99999999999 9999999999999999998764
No 203
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=91.09 E-value=0.25 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.-...+|.+..+... ++..++.+|+-|...|+++... ......|.+|+.++....
T Consensus 28 ~~i~~ei~~~~~~~i-s~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~Gr~~l~ 82 (99)
T 2co5_A 28 KRLRSEILKRFDIDI-SDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEKGMKEFE 82 (99)
T ss_dssp GGHHHHHHHHHCCBC-CHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHHHHHHHH
Confidence 344577777765311 7889999999999999998753 111346999999985443
No 204
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=91.00 E-value=0.037 Score=37.84 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK 85 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~ 85 (131)
++..|.+.|.. ++.+|..+||+++|+ +...+++-++.|...|++..
T Consensus 14 l~~~Il~~l~~-~~~ls~~eLa~~lgv---Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 14 IDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHH-CSSCCTTGGGTSSSC---CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEE
Confidence 34456776765 677899999999999 88999999999999999874
No 205
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=90.73 E-value=0.21 Score=32.54 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=38.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.|.++.|+|+.+|+ ++..+.++++.|+..|.+..-. .+.|-++..
T Consensus 19 ~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~----~~~~~~~~~ 63 (121)
T 2pjp_A 19 EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV----KDRYYRNDR 63 (121)
T ss_dssp SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE----TTEEEEHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec----CCceECHHH
Confidence 57799999999999 9999999999999999888876 566655543
No 206
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=90.54 E-value=0.26 Score=29.90 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++.+++.++|..+++. ..+.+|.+..+|.+.|++++..
T Consensus 28 ~~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 28 DGVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TTEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CCcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 4779999999999982 4678999999999999999874
No 207
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=90.49 E-value=0.27 Score=35.61 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
|..++..+||+.+|+ +...+++-|+.|...|++...+
T Consensus 47 G~~L~e~~La~~lgV---Sr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 47 GTALRQQELATLFGV---SRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp TCBCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCeeCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 567899999999999 9999999999999999999875
No 208
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=90.38 E-value=0.31 Score=33.68 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-++||..+|+ .+..+.|+++.|...|+++..
T Consensus 169 ~~t~~~lA~~lg~---sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGS---HREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeC
Confidence 8999999999999 999999999999999999876
No 209
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=90.28 E-value=0.25 Score=32.41 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=36.8
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
|..+ |..+||+.+|+ +...+++-++.|...|++.... |.|.|-.
T Consensus 32 G~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~---g~G~~V~ 76 (126)
T 3by6_A 32 NDQLPSVRETALQEKI---NPNTVAKAYKELEAQKVIRTIP---GKGTFIT 76 (126)
T ss_dssp TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec---CCeEEEc
Confidence 4556 99999999999 9999999999999999998765 1455544
No 210
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.16 E-value=0.27 Score=40.53 Aligned_cols=57 Identities=9% Similarity=0.023 Sum_probs=48.3
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc-----CCceeecccCCCCcceecchhcc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH-----SSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~-----~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+..|...|.+ .+.+|..+||+.+++ ++..+.|.|+.|+. .|+++.. ++.|.+++...
T Consensus 432 ~~~iL~~l~~-~~~it~~~la~~l~~---s~~~~~~~L~~L~~~~~~~~glie~~-----g~~y~L~~~~~ 493 (583)
T 3lmm_A 432 IAIVLYLLFQ-RPFITIDVVARGLQS---GKEAARNALEAARQTTVAGAPLIIAH-----DGVWLLGNACR 493 (583)
T ss_dssp HHHHHHHHHH-SSSBCHHHHHHHHTS---CHHHHHHHHHHHHTCEETTEESEEEE-----TTEEEECHHHH
T ss_pred HHHHHHHHHH-CCCcCHHHHHHHhCc---CHHHHHHHHHHHHhhhccccceEEEe-----CCEEEECHHHH
Confidence 4457777775 468999999999999 99999999999999 8899986 47899998644
No 211
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=90.08 E-value=0.36 Score=33.73 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-++|-.+||..+|+ .+..+.|+|+.|...|++....
T Consensus 174 ~~~t~~~iA~~lg~---sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 174 LPLGTQDIMARTSS---SRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp ECCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECS
T ss_pred cCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCcEEecC
Confidence 37899999999999 9999999999999999998763
No 212
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=90.05 E-value=0.27 Score=33.65 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=32.2
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-.+||..+|+ .+..+.|+++.|...|++...
T Consensus 164 ~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGC---SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999876
No 213
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=89.88 E-value=0.36 Score=31.54 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=37.6
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
|..+ |..+||+.+|+ +...+++-++.|...|++.... |.|.|-..+
T Consensus 34 g~~Lps~~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---g~G~~V~~~ 80 (125)
T 3neu_A 34 EDKLPSVREMGVKLAV---NPNTVSRAYQELERAGYIYAKR---GMGSFVTSD 80 (125)
T ss_dssp TCBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEECCC
T ss_pred CCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec---CCEEEEecC
Confidence 3445 79999999999 9999999999999999999765 256665543
No 214
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=89.78 E-value=0.39 Score=33.55 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-++|-++||..+|+ .+..+.|+++.|...|++....
T Consensus 179 ~~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 179 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cccCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeCC
Confidence 47899999999999 9999999999999999998763
No 215
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=89.70 E-value=0.29 Score=33.58 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++|-.+||..+|+ .+..+.|+++.|...|++....
T Consensus 167 ~~t~~~iA~~lg~---sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCC---cHHHHHHHHHHHHHCCcEEeCC
Confidence 6899999999999 9999999999999999999763
No 216
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=89.56 E-value=0.49 Score=30.55 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred hHHHHHhCCCCCCHHHHHhhc-------CCCCCCcchHHHHHHHhhcCCceeecccC---CCC--cceecchhcccccc
Q 040869 40 IADIIHSHGRAITLSELVSAL-------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN---GQE--EAYGLTAASTLLIK 106 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~-------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~---~~~--~~y~~t~~s~~L~~ 106 (131)
|..+|. .+|.+--||.+.+ ++ ++..|+++|+-|...|++...... +++ ..|++|+.++....
T Consensus 27 IL~lL~--~~~~~Gyei~~~l~~~~~~~~i---s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~ 100 (115)
T 2dql_A 27 ILYVLL--QGESYGTELIQQLETEHPTYRL---SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAE 100 (115)
T ss_dssp HHHHHT--TSCBCHHHHHHHHHHHCTTEEC---CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHcCCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHH
Confidence 555665 3788888887776 36 889999999999999999875321 111 34999999985543
No 217
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=89.48 E-value=0.33 Score=33.34 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-++||..+|+ .+..+.|+|+.|...|++...
T Consensus 146 ~~t~~~lA~~lg~---sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVGS---VRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeC
Confidence 5899999999999 999999999999999999976
No 218
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=89.46 E-value=0.32 Score=33.84 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=32.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++|-++||..+|+ .+..+.|+|+.|...|+++...
T Consensus 187 ~lt~~~lA~~lg~---sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 187 RVSRQELARLVGC---SREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEECC
Confidence 4899999999999 9999999999999999999763
No 219
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=89.41 E-value=0.29 Score=32.26 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=37.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
|..+ |..+||+.+|+ +...+++-++.|...|++.... |.|.|-.
T Consensus 35 G~~LPser~La~~~gV---Sr~tVReAl~~L~~eGlv~~~~---g~G~~V~ 79 (134)
T 4ham_A 35 GEKILSIREFASRIGV---NPNTVSKAYQELERQEVIITVK---GKGTFIA 79 (134)
T ss_dssp TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred CCCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc---CcEEEEe
Confidence 4456 89999999999 9999999999999999998765 2566653
No 220
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=89.21 E-value=0.32 Score=33.49 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
-++|-.+||..+|+ .+..+.|+++.|...|+++..
T Consensus 162 ~~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 162 FQIRHHELAALAGT---SRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEec
Confidence 36899999999999 999999999999999999876
No 221
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=89.19 E-value=0.42 Score=33.27 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
-++|-.+||..+|+ .+..+.|+++.|...|++...
T Consensus 176 ~~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 176 HDLTQEEIAQLVGA---SRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEec
Confidence 36899999999999 999999999999999999876
No 222
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=88.88 E-value=0.44 Score=33.82 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-++|-.+||..+|+ .+..+.|+|+.|...|++....
T Consensus 192 ~~lt~~~lA~~lG~---sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 192 LKLSHQAIAEAIGS---TRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCCHHHHHHHHCC---cHHHHHHHHHHHHHCCCEEEcC
Confidence 37899999999999 9999999999999999999763
No 223
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=88.82 E-value=0.35 Score=33.55 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-++|-++||..+|+ .+..+.|+++.|...|++....
T Consensus 177 ~~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~~ 212 (227)
T 3dkw_A 177 IPVAKQLVAGHLSI---QPETFSRIMHRLGDEGIIHLDG 212 (227)
T ss_dssp CCSCTHHHHHHTTS---CHHHHHHHHHHHHHHTSEEESS
T ss_pred ecCCHHHHHHHhCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 46899999999999 9999999999999999998763
No 224
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=88.72 E-value=0.3 Score=34.93 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=45.7
Q ss_pred ChHHHHHhCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHhhcCCceeecccC--CCC--cceecchhcc
Q 040869 39 GIADIIHSHGRAITLSELVSAL--------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQE--EAYGLTAAST 102 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~--------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~~--~~y~~t~~s~ 102 (131)
-|...|. .+|.+.-||++.+ ++ ++..+|+.|+-|...|+++..... +++ ..|..|+.++
T Consensus 40 ~IL~lL~--~~p~~GYeL~~~l~~~~~~~~~~---s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr 110 (204)
T 3l9f_A 40 IILGILS--KKERSGYEINDILQNQLSYFYDG---TYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGK 110 (204)
T ss_dssp HHHHHTS--SCCEEHHHHHHHHHHTSTTTEEC---CTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHhCCccCC---CcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHH
Confidence 4566665 4899999999987 35 788999999999999999865321 112 3599999987
No 225
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=88.66 E-value=0.37 Score=37.34 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=48.4
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccccCc
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKDK 108 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~~~ 108 (131)
.|.+.|-. ..-.+.+++++.+|+ +..+++|.|+.|+..|++.+... +....|...++-..|.++.
T Consensus 301 ~ll~~l~~-~p~~t~~~~~~~~gv---S~~Ta~r~L~~L~e~GiL~~~~~-gR~~~y~~~~~~~~l~~~~ 365 (373)
T 2qc0_A 301 ELVQVIFE-QPYCRIQNLVESGLA---KRQTASVYLKQLCDIGVLEEVQS-GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHHH-CSEEEHHHHHHTSSS---CHHHHHHHHHHHHHTTSCEEC---CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHHh-CCcccHHHHHHHhCC---CHHHHHHHHHHHHHCCcEEEecC-CCceEEehHHHHHHHccCC
Confidence 35555653 234689999999999 99999999999999999998752 1124588878777776654
No 226
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=88.66 E-value=0.34 Score=33.14 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=32.7
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++|-++||..+|+ .+..+.|+|+.|...|+++...
T Consensus 139 ~~t~~~lA~~lg~---sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 139 TVSHEEIADATAS---IRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp ECCHHHHHHTTTS---CHHHHHHHHHHHHHHTSEEEET
T ss_pred cCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 5899999999999 9999999999999999998763
No 227
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=88.49 E-value=0.3 Score=38.35 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=44.1
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceec
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGL 97 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~ 97 (131)
-.|++.|. .+|+++++|+.++|+ +...+...|-.|.-.|++.... ++.|++
T Consensus 331 ~~vl~~l~--~~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~----Gg~~~~ 381 (382)
T 3maj_A 331 TRILALLG--PSPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG----GSLVSL 381 (382)
T ss_dssp HHHHHHCC--SSCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT----TSEEEC
T ss_pred HHHHHhhC--CCCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC----CceEec
Confidence 34777775 379999999999999 9999999999999999999886 677765
No 228
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=88.30 E-value=0.46 Score=33.40 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-.+||..+|+ .+..+.|+++.|...|+++..
T Consensus 186 ~~t~~~lA~~lG~---sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999876
No 229
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=88.26 E-value=0.49 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=46.3
Q ss_pred hHHHHHhCCCCCCHHHHHhhc-------CCCCCCcchHHHHHHHhhcCCceeecccCC---C--CcceecchhccccccC
Q 040869 40 IADIIHSHGRAITLSELVSAL-------DIQPTKTTGLFRLMRLLVHSSCFNKTKVNG---Q--EEAYGLTAASTLLIKD 107 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~-------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~---~--~~~y~~t~~s~~L~~~ 107 (131)
|..+|. .+|.+--||.+.+ ++ ++..|+++|+.|...|++....... + ...|.+|+.++.....
T Consensus 49 IL~lL~--~~p~~GYeI~k~l~~~~~~~~i---s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~ 123 (148)
T 2zfw_A 49 VLAVLR--HEDSYGTELIQHLETHWPNYRL---SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRD 123 (148)
T ss_dssp HHHHHT--TCCEEHHHHHHHHHHHCTTEEC---CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHH
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHcCCCCC---ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHH
Confidence 555665 3788888888876 36 8889999999999999998753210 1 2349999999855433
No 230
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=88.15 E-value=0.44 Score=33.20 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
++|-.+||..+|+ .+..+.|+++.|...|++....
T Consensus 163 ~~t~~~lA~~lG~---sr~tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 163 DFTVEEIANLIGS---SRQTTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp CCCHHHHHHHHCS---CHHHHHHHHHHHHHTTSSEECS
T ss_pred cCCHHHHHHHhCC---cHHHHHHHHHHHHHCCcEEEcC
Confidence 4899999999999 9999999999999999998764
No 231
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=88.03 E-value=0.75 Score=33.75 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=43.4
Q ss_pred ChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 39 GIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 39 ~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.|...+.+.+ .|-.+.||++.+++ ++..+..+|+.|+..|.+.+-. ++.|-+...
T Consensus 145 ~i~~~~~~~g~~pp~~~dl~~~l~~---~~~~~~~~l~~l~~~g~lv~l~----~~~~~~~~~ 200 (258)
T 1lva_A 145 DLEDKYRVSRWQPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN----DEFYWHRQA 200 (258)
T ss_dssp HHHHHHHHHTTSCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS----SSBEEEHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHhHhCC---CHHHHHHHHHHHHHCCCEEEec----CCeEEcHHH
Confidence 4555554433 47799999999999 9999999999999999888876 677665543
No 232
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=87.87 E-value=0.36 Score=31.06 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=33.8
Q ss_pred HhChHHHHHhCC---CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 37 ELGIADIIHSHG---RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 37 ~L~ifd~l~~~~---~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+-.|.+.|-++. ..+|+.|||+++|+ ++..+.|+.|.|--.|+-.
T Consensus 23 e~~ia~yil~~~~~~~~~si~elA~~~~v---S~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISALANS---SDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTC---CHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHChHHHHhcCHHHHHHHHCC---CHHHHHHHHHHcCCCCHHH
Confidence 344556554321 35999999999999 9999999999887777533
No 233
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=87.85 E-value=0.46 Score=32.95 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=32.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
-++|-.+||..+|+ .+..+.|+++.|...|++...
T Consensus 166 ~~~t~~~lA~~lg~---sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 166 LGLNTEEIALMLGT---TRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp CSSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEES
T ss_pred ccCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEEc
Confidence 37999999999999 999999999999999999875
No 234
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=87.85 E-value=1.8 Score=31.40 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=37.9
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-|.-.|. .++.|..+||..+|+ +++.+.-.|+-|+..|++....
T Consensus 169 ~l~~~l~--~~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 169 ILHYLLL--NGRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN 212 (232)
T ss_dssp HHHHHHH--SSEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET
T ss_pred HHHHHHh--cCCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec
Confidence 3444555 479999999999999 9999999999999999998665
No 235
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=87.73 E-value=0.41 Score=37.26 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=47.9
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccccccCc
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIKDK 108 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~~~ 108 (131)
+.+.|.+ ....|.+++++.+|+ ...+..|.|+.|+..|++++.+. +....|....+-..|.++.
T Consensus 302 ll~~l~~-~p~~t~~~~~~~~~~---S~~TA~r~L~~L~e~GiL~~~~~-gR~~~y~~~~~l~il~~~~ 365 (373)
T 3eqx_A 302 LVQVIFE-QPYCRIQNLVESGLA---KRQTASVYLKQLCDIGVLEEVQS-GKEKLFVHPKFVTLMTKDS 365 (373)
T ss_dssp HHHHHHH-CSEEEHHHHHHTSSS---CHHHHHHHHHHHHHTTSCEEC---CCSCEEECHHHHHHHHSSC
T ss_pred HHHHHHH-CCCccHHHHHHHhCc---CHHHHHHHHHHHHHCCcEEEeCC-CCceEeehHHHHHHHhccC
Confidence 4555553 245899999999999 99999999999999999998752 1134588887777776554
No 236
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=87.65 E-value=0.7 Score=32.57 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.6
Q ss_pred CCCHHHHHhhcCCCCCCc-chHHHHHHHhhcCCceeecc
Q 040869 50 AITLSELVSALDIQPTKT-TGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~-~~l~RlLr~L~~~gl~~~~~ 87 (131)
++|-.+||..+|+ .+ ..+.|+|+.|...|++....
T Consensus 169 ~~t~~~lA~~lG~---sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGI---AHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTC---CCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCC---ChHHHHHHHHHHHHHCCCEEecC
Confidence 7999999999999 99 69999999999999998763
No 237
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.54 E-value=0.44 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=42.9
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHH-HhhcCCceeecccCCCCcceecchhcc
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMR-LLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr-~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
++..+... +.+.+..++|+.+|+ +...+++.++ +|...|++.... .....|+.+.
T Consensus 268 ~l~~l~~~~~~~~~~~~~a~~lg~---~~~tl~~~l~~~l~~~gli~~~~-----~g~~~t~~~~ 324 (338)
T 3pfi_A 268 YLELLTAAKQKPIGLASIAAALSE---DENTIEDVIEPYLLANGYIERTA-----KGRIASAKSY 324 (338)
T ss_dssp HHHHHHHSCSCCBCHHHHHHHTTC---CHHHHHHTTHHHHHHTTSEEEET-----TEEEECHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHhCC---CHHHHHHHHhHHHHHcCceecCC-----CcccccHHHH
Confidence 44444432 467889999999999 9999999999 999999998874 3456777665
No 238
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=87.38 E-value=0.53 Score=32.36 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=40.5
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
-.|.+.|. .|+.|..+||+++|+ +-...+=.|..|.-.|++.+..
T Consensus 14 ~~ILE~Lk--~G~~~t~~Iak~LGl---Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 14 RDILALLA--DGCKTTSLIQQRLGL---SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHT--TCCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHH--hCCccHHHHHHHhCC---cHHHHHHHHHHHHhcCceEEEE
Confidence 35778887 589999999999999 8899999999999999999876
No 239
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=87.14 E-value=0.87 Score=28.68 Aligned_cols=42 Identities=7% Similarity=0.190 Sum_probs=32.1
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+.+.|... ..++|+++||+.+|+ ++..|.|+++......+-.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~---S~~~l~r~fk~~~G~s~~~ 54 (113)
T 3oio_A 12 AVSLMEANIEEPLSTDDIAYYVGV---SRRQLERLFKQYLGTVPSK 54 (113)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHTS---CHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHhhhcCCCCHHHHHHHHCc---CHHHHHHHHHHHHCcCHHH
Confidence 34455533 367999999999999 9999999998876665443
No 240
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=87.03 E-value=0.78 Score=33.38 Aligned_cols=46 Identities=9% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
|..+ |-.+||++.|+ +...+++-|+.|+..|++.. . |.|.|-..+.
T Consensus 33 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~-~---g~Gt~V~~~~ 79 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEV---ARETVRQALRELLIDGRVER-R---GRTTVVARPK 79 (248)
T ss_dssp TCBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEE-E---TTEEEECCCC
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEe-C---CCEEEEccCc
Confidence 5567 99999999999 99999999999999999999 6 2677766543
No 241
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=86.92 E-value=0.44 Score=30.55 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred HhChHHHHHhCC---CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCce
Q 040869 37 ELGIADIIHSHG---RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCF 83 (131)
Q Consensus 37 ~L~ifd~l~~~~---~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~ 83 (131)
+-.|.+.|-++. ..+|+.|||+++++ ++..+.|+.|.|--.|+-
T Consensus 19 e~~ia~yil~~~~~~~~~si~elA~~~~v---S~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEIANQLET---SSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHHHHHHTS---CHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHhCHHHHHHCCHHHHHHHHCC---CHHHHHHHHHHhCCCCHH
Confidence 344555554322 46999999999999 999999999998766643
No 242
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=86.82 E-value=0.65 Score=30.06 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.-+|+..|++++++ .-+..+++||.|...|++....
T Consensus 58 KlITpsvlseRlkI---~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKI---GGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp SSBSHHHHHHTTCC---CTTHHHHHHHHHSSSSSCEEEE
T ss_pred eEEeHHHhhhhhhh---hHHHHHHHHHHHHHCCCEEEEe
Confidence 56999999999999 9999999999999999998764
No 243
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=86.75 E-value=0.57 Score=33.70 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=32.4
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-.+||..+|+ .+..+.|+|+.|...|+++..
T Consensus 217 ~lt~~~lA~~lG~---sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999976
No 244
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=86.49 E-value=0.028 Score=43.33 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=45.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+..+.-.|-+ .++.|+.|||+.+|+ +...+++.|+.|...|++..... .+..|...|...
T Consensus 20 ea~vY~~Ll~-~g~~t~~eia~~~gv---~~~~Vy~~L~~L~~~GlV~~~~g--~p~~y~av~p~~ 79 (342)
T 3qph_A 20 EILTYWTLLV-YGPSTAKEISTKSGI---PYNRVYDTISSLKLRGFVTEIEG--TPKVYAAYSPRI 79 (342)
T ss_dssp TTSCSHHHHH-HHHHHHSCCSSSTTS---SSCSCCHHHHHHHHHTSEEEECC--TTCEEEECCHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC--ceeEEEEcCHHH
Confidence 3344445543 368999999999999 99999999999999999987641 256777766543
No 245
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=86.46 E-value=0.88 Score=32.87 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
|..+ |-.+||++.|+ +...+++-++.|...|++.... |.|.|-..+
T Consensus 30 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---g~G~~V~~~ 76 (236)
T 3edp_A 30 GMLMPNETALQEIYSS---SRTTIRRAVDLLVEEGLVVRKN---GVGLYVQPK 76 (236)
T ss_dssp CC--CCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEECCC
T ss_pred cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC---CceEEEccC
Confidence 4567 89999999999 9999999999999999999875 256665543
No 246
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=86.26 E-value=0.66 Score=33.06 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
|..+ |-.+||+++|+ +...++.-|+.|...|++.... |.|.|-..
T Consensus 28 G~~LPsE~eLa~~~gV---SR~tVReAL~~L~~eGlv~~~~---g~G~~V~~ 73 (239)
T 1hw1_A 28 GTILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH---GKPTKVNN 73 (239)
T ss_dssp TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---TEEEEECC
T ss_pred CCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEec---CCCcEeeC
Confidence 4567 89999999999 9999999999999999999875 25666654
No 247
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=86.19 E-value=0.94 Score=32.81 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=37.9
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
|..+ |-.+||++.|+ +...+++-++.|...|++.... |.|.|-..
T Consensus 31 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---g~G~~V~~ 76 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGI---SRMTVRQALSNLVNEGLLYRLK---GRGTFVSK 76 (243)
T ss_dssp TCBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT---TSCEEECC
T ss_pred cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEeC---CCeEEEeC
Confidence 4566 89999999999 9999999999999999999765 25666544
No 248
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=86.16 E-value=0.49 Score=33.45 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
|..++-.+||+.+|+ +...++.-|+.|...|++...+
T Consensus 33 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 33 GEKLNVRELSEKLGI---SFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp TCEECHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEET
T ss_pred CCEeCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 567899999999999 9999999999999999999765
No 249
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=86.08 E-value=0.52 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.-+|+..|++++++ .-+..+++||.|...|++....
T Consensus 62 KlITpsvlseRlkI---~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 62 KVLTVSTVVEKLKV---NGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp SEECHHHHHHHHCB---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred eeecHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 46899999999999 9999999999999999998763
No 250
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=85.82 E-value=0.23 Score=32.60 Aligned_cols=46 Identities=11% Similarity=0.191 Sum_probs=36.7
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
|..+ |..+||+.+|+ +...+++-++.|...|++.... +.|.|-..+
T Consensus 32 G~~lPs~~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---~~G~~V~~~ 78 (126)
T 3ic7_A 32 EGRIPSVREYASIVEV---NANTVMRSYEYLQSQEVIYNKR---GIGFFVASG 78 (126)
T ss_dssp TSEECCTTTTTTCC-C---CSGGGHHHHHHHHTTTSEEEET---TTEEEECTT
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEEc---CCccEEccC
Confidence 3456 89999999999 9999999999999999998765 256565444
No 251
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=85.67 E-value=1 Score=32.50 Aligned_cols=45 Identities=11% Similarity=0.296 Sum_probs=37.7
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
|..+ |-.+||++.|+ +...+++-|+.|...|++.... |.|.|-..
T Consensus 26 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~g~i~~~~---g~G~~V~~ 71 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEV---SKSTITKSLELLEQKGAIFQVR---GSGIFVRK 71 (239)
T ss_dssp TCBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEET---TTEEEECC
T ss_pred CCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEeC---CceEEEec
Confidence 4567 89999999999 9999999999999999999865 25666543
No 252
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=85.27 E-value=1 Score=28.09 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
..++|+++||+.+|+ ++..|.|+.+......+-.
T Consensus 16 ~~~~~~~~lA~~~~~---s~~~l~r~fk~~~G~s~~~ 49 (108)
T 3mn2_A 16 MRPITIEKLTALTGI---SSRGIFKAFQRSRGYSPMA 49 (108)
T ss_dssp TSCCCHHHHHHHHTC---CHHHHHHHHHHHTSSCHHH
T ss_pred cCCCCHHHHHHHHCC---CHHHHHHHHHHHhCcCHHH
Confidence 367999999999999 9999999998776655443
No 253
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=85.07 E-value=0.56 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 51 ITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
.|..+||+.+|+ +...++|.++
T Consensus 22 ~s~~~ia~~lgv---s~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGI---GVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSC---CHHHHHHHSC
T ss_pred CCHHHHHHHHCC---CHHHHHHHHH
Confidence 899999999999 9999998765
No 254
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=84.81 E-value=0.74 Score=33.18 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
|..++-.+||+.+|+ +...++.-|+.|...|++...+
T Consensus 49 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 49 GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCEeCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 567899999999999 9999999999999999999775
No 255
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=84.78 E-value=0.8 Score=30.63 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=45.3
Q ss_pred hHHHHHhCCCCCCHHHHHhhc-------CCCCCCcchHHHHHHHhhcCCceeecccC---CCC--cceecchhcccccc
Q 040869 40 IADIIHSHGRAITLSELVSAL-------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN---GQE--EAYGLTAASTLLIK 106 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~-------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~---~~~--~~y~~t~~s~~L~~ 106 (131)
|..+|. .+|.+--+|++.+ ++ ++..|+++|+-|...|++...... .++ ..|++|+.++....
T Consensus 39 IL~lL~--~~~~~Gyei~k~l~~~~~~~~i---s~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~ 112 (138)
T 2e1n_A 39 VLAVLR--HEDSYGTELIQHLETHWPNYRL---SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSR 112 (138)
T ss_dssp HHHHHT--TSCEEHHHHHHHHHHHSTTEEC---CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHH
T ss_pred HHHHHH--hCCCcHHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHH
Confidence 556665 3688888887766 36 888999999999999999875321 111 34999999985543
No 256
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=84.33 E-value=1.2 Score=27.79 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
.++|+++||+.+|+ ++..|.|+.+......+-.
T Consensus 20 ~~~~~~~lA~~~~~---S~~~l~r~fk~~~G~s~~~ 52 (108)
T 3oou_A 20 EGMSLKTLGNDFHI---NAVYLGQLFQKEMGEHFTD 52 (108)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHCcCHHH
Confidence 58999999999999 9999999999877665544
No 257
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=84.31 E-value=0.99 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
...|..|||+.+|+ ++..+++.++
T Consensus 30 ~g~s~~eIA~~lgi---s~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGV---SERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 35799999999999 9999998874
No 258
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=83.84 E-value=2.2 Score=27.86 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=44.4
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC---CCCcceecchhc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN---GQEEAYGLTAAS 101 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~---~~~~~y~~t~~s 101 (131)
+|=|.-+|.. +.| |+..|.+.+|. +.+.+.+.+.+|...|+--+-..+ ...|.|..+.-+
T Consensus 22 RLyla~lId~-~~~-nvp~L~~~TGm---PRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~dWG 84 (117)
T 3ke2_A 22 KLYLAHLMDD-ARH-NLLSLGKLTGM---PRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRTWG 84 (117)
T ss_dssp HHHHHHHHHH-SCC-CHHHHHHHHCC---CHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEECT
T ss_pred HHHHHHHHhc-CCC-CHHHHHHHHCC---CHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEEeecC
Confidence 4555666765 555 99999999999 999999999999999976653211 113778887554
No 259
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=83.82 E-value=1.8 Score=26.83 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=31.5
Q ss_pred hHHHHHhC-C-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 40 IADIIHSH-G-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 40 ifd~l~~~-~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+.+.|.+. . .++|+++||+.+|+ ++..+.|+.+......+-.
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~---S~~~l~r~fk~~~G~s~~~ 51 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCL---SPSRLSHLFRQQLGISVLS 51 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTS---CHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCC---CHHHHHHHHHHHHCcCHHH
Confidence 34445432 2 68999999999999 9999999998776655443
No 260
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=83.53 E-value=1.3 Score=28.67 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=31.1
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+.+.|... ..++|+++||+.+|+ ++..|.|+++......+-+
T Consensus 16 ~~~~i~~~~~~~~sl~~lA~~~~~---S~~~l~r~fk~~~G~s~~~ 58 (129)
T 1bl0_A 16 ILDWIEDNLESPLSLEKVSERSGY---SKWHLQRMFKKETGHSLGQ 58 (129)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHSSS---CHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCc---CHHHHHHHHHHHHCcCHHH
Confidence 34445432 367999999999999 9999999998776554433
No 261
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=83.41 E-value=0.99 Score=31.92 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=34.2
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
|..++-.+||+.+|+ +...++.-|+.|.+.|+++..+
T Consensus 37 G~~L~E~~La~~lgV---SRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 37 GQRLVETDLVAHFGV---GRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECS
T ss_pred CCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 567889999999999 9999999999999999999765
No 262
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=82.55 E-value=0.9 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=18.6
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 51 ITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
+|..|||+++|+ ++..+.|+|+
T Consensus 1 ~T~~diA~~aGV---S~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGV---SRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTS---CHHHHHHHHH
T ss_pred CCHHHHHHHHCc---CHHHHHHHHc
Confidence 478899999999 8888888876
No 263
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=82.42 E-value=1.4 Score=32.54 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
|..+ |-.+||++.|+ +...+++-|+.|+..|++.... |.|.|-..+.
T Consensus 50 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---g~G~~V~~~~ 97 (272)
T 3eet_A 50 HTRLPSQARIREEYGV---SDTVALEARKVLMAEGLVEGRS---GSGTYVRERP 97 (272)
T ss_dssp TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECC---C--EEECCCC
T ss_pred cCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec---CceEEEecCC
Confidence 4556 99999999999 9999999999999999998775 2566665543
No 264
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=82.39 E-value=0.99 Score=32.76 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=43.2
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC--CCCcceecchhc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN--GQEEAYGLTAAS 101 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~--~~~~~y~~t~~s 101 (131)
|.+..+|+- .+|+|-.||++..|+ +. ..++|.|...|++.+.+.. .|+-.|..|+..
T Consensus 103 LEtLaiIAy-~QPITR~eI~~irGv---~~---~~~v~~Lle~gLI~e~Gr~~~~Gp~ly~tT~~F 161 (219)
T 2z99_A 103 LETLAVVAY-RQPVTRARVSAVRGV---NV---DAVMRTLLARGLITEVGTDADTGAVTFATTELF 161 (219)
T ss_dssp HHHHHHHHH-HCSEEHHHHHHHHTS---CC---HHHHHHHHHTTSEEEEEECTTTCCEEEEECHHH
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHCC---CH---HHHHHHHHHCCCEEEccccCCCCCeEEEECHHH
Confidence 346667764 489999999999999 65 6899999999999987432 224457777754
No 265
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=82.16 E-value=1.4 Score=27.12 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+++++++||+.+|+ ++..|.|+++......+-.
T Consensus 18 ~~~~~~~lA~~~~~---S~~~l~r~fk~~~g~s~~~ 50 (103)
T 3lsg_A 18 SQFTLSVLSEKLDL---SSGYLSIMFKKNFGIPFQD 50 (103)
T ss_dssp TTCCHHHHHHHTTC---CHHHHHHHHHHHHSSCHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHCcCHHH
Confidence 48999999999999 9999999998877665443
No 266
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=81.99 E-value=1.4 Score=24.37 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=23.3
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..|+..+. .+.|..|||+.+|+ ++..+...++
T Consensus 4 ~~vl~l~~---~g~s~~eIA~~l~i---s~~tV~~~~~ 35 (61)
T 2jpc_A 4 RQVLKLID---EGYTNHGISEKLHI---SIKTVETHRM 35 (61)
T ss_dssp HHHHHHHH---TSCCSHHHHHHTCS---CHHHHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHhCC---CHHHHHHHHH
Confidence 34565554 46899999999999 8887665443
No 267
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=81.90 E-value=0.99 Score=31.54 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSC 82 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl 82 (131)
-|+|-.+||..+|+ .+..+.|+++.|...|+
T Consensus 177 l~~t~~~iA~~lg~---sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 177 LPYDKMLIAGRLGM---KPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CCSCTHHHHHHTTC---CHHHHHHHHHHHGGGTE
T ss_pred ecCCHHHHHHHhCC---CHHHHHHHHHHHHHCCe
Confidence 36889999999999 99999999999999996
No 268
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=81.66 E-value=0.29 Score=39.85 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCC-ceeecccCCCCcceecchhcc-ccccCcc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSS-CFNKTKVNGQEEAYGLTAAST-LLIKDKP 109 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~g-l~~~~~~~~~~~~y~~t~~s~-~L~~~~~ 109 (131)
++..|...|.+.+.+++..+||+.+|+ +...+.+.+..|.+.| +++-.... ...|.+|.-++ ++..+.|
T Consensus 6 ~~~~iL~~l~~~~~~~~~~~~a~~~~~---~~~~v~~~~~~L~~~~~~v~~~~~~--~~~~~Lt~eg~~~~~~G~p 76 (508)
T 3l4g_A 6 VAELLLRRLEASDGGLDSAELAAELGM---EHQAVVGAVKSLQALGEVIEAELRS--TKHWELTAEGEEIAREGSH 76 (508)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHcCC---CHHHHHHHHHHHHhCCCeEEEEEEE--EEEEEECHHHHHHHHcCCH
Confidence 445666777643327899999999999 9999999999999998 87754321 57799999987 4555555
No 269
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=80.96 E-value=1.4 Score=31.52 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee--cc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK--TK 87 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~--~~ 87 (131)
|..+ +-.+||+++|+ +...++.-|+.|...|+++. .+
T Consensus 25 G~~LpsE~~La~~lgV---SRtpVREAL~~L~~~GlV~~~~~~ 64 (239)
T 2di3_A 25 GDHLPSERALSETLGV---SRSSLREALRVLEALGTISTATGS 64 (239)
T ss_dssp TCBCCCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEECCSTT
T ss_pred CCcCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeeccc
Confidence 4567 57799999999 99999999999999999997 64
No 270
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=80.76 E-value=2.2 Score=27.02 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.0
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
|.+.|... ..++++++||+.+|+ ++..|.|+++.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~---S~~~l~r~fk~ 46 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLM---SPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTC---CHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCc---CHHHHHHHHHH
Confidence 44455433 368999999999999 99999999876
No 271
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=80.70 E-value=0.32 Score=40.06 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchh
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAA 100 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~ 100 (131)
.|.+.|.+ .+.+|.+||++.+|+ ++..++|+|+-|+..|++...+. +...+|..|.+
T Consensus 520 ~I~~~l~~-~g~it~~di~~l~~l---s~~qa~~~L~~Lv~~G~l~~~G~-gr~t~Y~~~~~ 576 (583)
T 3lmm_A 520 AAMLWLSE-VGDLATSDLMAMCGV---SRGTAKACVDGLVDEERVVAVGG-GRSRRYRLVEL 576 (583)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEeCC-CCceEEEEeec
Confidence 46677764 468999999999999 89999999999999999987641 01234655543
No 272
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=80.10 E-value=0.35 Score=33.60 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
++|-++||..+|+ .+..+.|+++.|...|+++..
T Consensus 164 ~~t~~~lA~~lg~---sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFGC---ARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp -------------------------------------
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCeEEEc
Confidence 7899999999999 999999999999999999865
No 273
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=80.08 E-value=1.9 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=24.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
+..|+..+. .+.|..|||+.+|+ ++..+++.++.
T Consensus 16 e~~il~~~~---~g~s~~eIA~~l~i---s~~tV~~~~~~ 49 (74)
T 1fse_A 16 EREVFELLV---QDKTTKEIASELFI---SEKTVRNHISN 49 (74)
T ss_dssp HHHHHHHHT---TTCCHHHHHHHHTS---CHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCC---CHHHHHHHHHH
Confidence 334555553 45799999999999 88877665544
No 274
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=79.68 E-value=1.6 Score=32.44 Aligned_cols=60 Identities=7% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHhCCCCCCHHH---HHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcccccc
Q 040869 43 IIHSHGRAITLSE---LVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 43 ~l~~~~~~~s~~e---LA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.+...++.+++.+ +.+.+|+ ++..++--|.-|+..|.+..... +....|++|+.++....
T Consensus 35 ~~~~~g~~i~~~~Li~l~~~~Gi---~~~avR~Al~RL~~~G~l~~~~~-Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 35 VSRDGVIEVSGVALSSFVERMGL---QPQAMRVALHRLKRDGWVESRRL-GRVGFHRLSDSALTQTR 97 (266)
T ss_dssp HHHTTCCCEEHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHH
T ss_pred HhccCCCcccHHHHHHHHHHcCC---CchHHHHHHHHHHHCCCeeeeec-CCcceEEECHHHHHHHH
Confidence 3444467788887 6778899 99999999999999999987651 00127999999885443
No 275
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=79.52 E-value=0.68 Score=32.02 Aligned_cols=43 Identities=9% Similarity=0.038 Sum_probs=35.3
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
|.+..+|+- .+|+|-.||++..|+ + ...+++.|...|++.+.+
T Consensus 97 LEtLaiIay-~qPiTR~eI~~irGv---~---~~~~v~~L~e~glI~e~g 139 (162)
T 1t6s_A 97 LEVLAVVAW-HQPVTKGEIQQIRGA---S---PDYSIDRLLARGLIEVRG 139 (162)
T ss_dssp HHHHHHHHH-HCSEEHHHHHHHHTC---C---CCSHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHCC---C---HHHHHHHHHHCCCEEEcc
Confidence 456677764 479999999999999 6 556899999999999864
No 276
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=78.97 E-value=1.4 Score=27.57 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=26.3
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
.|.+.|... .+|+.|||+.+|+ +...+.|.|+.
T Consensus 11 ~I~~~l~~~--~~ti~dlA~~~gV---S~~TVsR~L~~ 43 (93)
T 2l0k_A 11 KIGKYIVET--KKTVRVIAKEFGV---SKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHTS---CHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCHHHHHHHHCC---CHHHHHHHHcC
Confidence 366667642 3899999999999 99999998864
No 277
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=78.81 E-value=1.3 Score=29.63 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=45.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcC---CceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHS---SCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~---gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
++.+|..+.+ .-|...-|+++++ ..+.+.|.++.|... .+|.+.....+++.+.+|+.++.|..
T Consensus 28 ~L~~f~av~e---~gS~s~AA~~L~i---SqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~ 94 (135)
T 2ijl_A 28 KVELMQLIAE---TGSISAAGRAMDM---SYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLE 94 (135)
T ss_dssp HHHHHHHHHH---HSCHHHHHHHTTC---CHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHH
T ss_pred HHHHHHHHHH---hCCHHHHHHHHCc---CHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHH
Confidence 4667777874 3478889999999 999999999998754 68887740000147999999987654
No 278
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=78.38 E-value=1.9 Score=31.29 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
..-|+..|+ .|+|.|.++||+.+|. +.+.+.+.|..+.
T Consensus 24 ~~~llr~la-~Grpv~~~~LA~~~g~---~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELA-KGRPVSRTTLAGILDW---PAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHT-TTSCBCHHHHHHHHTC---CHHHHHHHHHHCT
T ss_pred HHHHHHHHh-cCCCCCHHHHHHHhCc---CHHHHHHHHHhCC
Confidence 334556677 4899999999999999 8887777777764
No 279
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=77.99 E-value=2 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=19.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
.+.|..|||+.+|+ ++..+++.+
T Consensus 29 ~~~s~~eIA~~l~i---s~~tV~~~~ 51 (73)
T 1ku3_A 29 REHTLEEVGAYFGV---TRERIRQIE 51 (73)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHH
Confidence 57999999999999 888766544
No 280
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=77.76 E-value=3.8 Score=29.98 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=36.8
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeec
Q 040869 37 ELGIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
...|+..++. ++.+..+|++.+ ++ +...+.+.++.|...|++.+.
T Consensus 284 ~~~~l~~la~--g~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 284 YVDILRAIAL--GYNRWSLIRDYLAVKGTKI---PEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHHT--TCCSHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCEEec
Confidence 3456777774 468999998877 78 888899999999999999876
No 281
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=77.62 E-value=2.1 Score=30.09 Aligned_cols=47 Identities=17% Similarity=0.034 Sum_probs=38.5
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
-+-.|.+.|.+ .+.+|.+|||+.+++ ++.+++|=|..|.--++..+.
T Consensus 13 R~~~i~~~l~~-~~~~~~~~la~~~~v---s~~TiRrDl~eL~~~~l~~r~ 59 (190)
T 4a0z_A 13 RREAIRQQIDS-NPFITDHELSDLFQV---SIQTIRLDRTYLNIPELRKRI 59 (190)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHH-CCCEeHHHHHHHHCC---CHHHHHHHHHHhcCcchhhHh
Confidence 34457788876 467999999999999 999999999999877766553
No 282
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=77.43 E-value=0.62 Score=33.90 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=5.7
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecc
Q 040869 48 GRAI-TLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLT 98 (131)
Q Consensus 48 ~~~~-s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t 98 (131)
|..+ |-.+||++.|+ +...+++-++.|...|++.... |.|.|-..
T Consensus 37 g~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~---g~G~~V~~ 82 (247)
T 2ra5_A 37 GSLLGNEIELAARLGL---SRPTVRQAIQSLVDKGLLVRRR---GVGTQVVH 82 (247)
T ss_dssp ----------------------------------CEEEEEC-----------
T ss_pred CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc---CceeEEec
Confidence 4566 89999999999 9999999999999999998765 24555543
No 283
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=76.27 E-value=3.1 Score=25.45 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHH-hhcCCc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRL-LVHSSC 82 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~-L~~~gl 82 (131)
-+..|+..+. .++|..|||+.+|+ .+..+...++. +...|+
T Consensus 33 rE~~Vl~l~~---~G~s~~eIA~~L~i---S~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 33 RECLILQEVE---KGFTNQEIADALHL---SKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHCC
Confidence 4556777776 46999999999999 88876654433 333443
No 284
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=76.24 E-value=2.2 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=19.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
.+.|..|||+.+|+ ++..+.+.++
T Consensus 24 ~g~s~~eIA~~lgi---s~~tV~~~~~ 47 (68)
T 2p7v_B 24 TDYTLEEVGKQFDV---TRERIRQIEA 47 (68)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 57999999999999 8887766553
No 285
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=75.85 E-value=0.55 Score=34.84 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhChHHHHHhC--CCCCCHHHHHhhc-CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 36 IELGIADIIHSH--GRAITLSELVSAL-DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 36 ~~L~ifd~l~~~--~~~~s~~eLA~~~-~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
++-.|++.|... +.+++.++|++++ ++ ++..++..++.|...|.+-.+-. +.+|..|.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~---~~~~v~~al~~L~~eG~IYsTiD---d~h~k~t~ 268 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHM---SVSSIKQAVDFLSNEGHIYSTVD---DDHFKSTD 268 (270)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCC---CHHHHHHHHHHHHhCCEEecccc---ccceeecc
Confidence 455688888743 2689999999999 68 88999999999999998876541 57887764
No 286
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=75.64 E-value=2.8 Score=28.71 Aligned_cols=30 Identities=7% Similarity=0.408 Sum_probs=24.2
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
||+... .+.|+.+||+.+|+ +...++|+++
T Consensus 151 i~~~~~---~G~s~~~Ia~~l~i---s~~tv~r~l~ 180 (183)
T 1gdt_A 151 VLNMWQ---QGLGASHISKTMNI---ARSTVYKVIN 180 (183)
T ss_dssp HHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred HHHHHH---CCCCHHHHHHHHCc---CHHHHHHHHh
Confidence 455444 35799999999999 9999999886
No 287
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=75.45 E-value=2.7 Score=27.64 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHHhChHHHHHhCCCCCCHHHHHhhc-------CCCCCCcchHHHHHHHhhcCCceeecccC-CCC-----cceecch
Q 040869 33 KCAIELGIADIIHSHGRAITLSELVSAL-------DIQPTKTTGLFRLMRLLVHSSCFNKTKVN-GQE-----EAYGLTA 99 (131)
Q Consensus 33 ~~a~~L~ifd~l~~~~~~~s~~eLA~~~-------~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-~~~-----~~y~~t~ 99 (131)
...+++-|..++.+ +|+---||.+.+ +..+ ++..++.+|.-|...|++...... .+. ..|.+|+
T Consensus 16 ~~fl~l~IL~ll~~--~p~YGYeI~~~L~e~~~~~~~~i-s~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~ 92 (122)
T 1bm9_A 16 RAFLKLYMITMTEQ--ERLYGLKLLEVLRSEFKEIGFKP-NHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKD 92 (122)
T ss_dssp HHHHHHHHHHHHHT--TCCBSTTHHHHHHHHHTTTTCCC-CHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESC
T ss_pred HHHHHHHHHHHHcc--CCchHHHHHHHHHHhhccCcccC-CcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEECh
Confidence 45677777888874 666666666655 2333 777899999999999999875431 122 3499999
Q ss_pred hccc
Q 040869 100 ASTL 103 (131)
Q Consensus 100 ~s~~ 103 (131)
.++.
T Consensus 93 ~G~~ 96 (122)
T 1bm9_A 93 YEAA 96 (122)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7765
No 288
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=75.27 E-value=3 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.0
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..|+..+. ..+|..|||+.+|+ .+..++..++
T Consensus 27 ~~vl~l~~---~g~s~~eIA~~l~i---s~~tV~~~l~ 58 (82)
T 1je8_A 27 RDILKLIA---QGLPNKMIARRLDI---TESTVKVHVK 58 (82)
T ss_dssp HHHHHHHT---TTCCHHHHHHHHTS---CHHHHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 34555543 45999999999999 8887665443
No 289
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=75.27 E-value=4.8 Score=29.50 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCCCCHHHHHh---hcCCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhccc
Q 040869 48 GRAITLSELVS---ALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAASTL 103 (131)
Q Consensus 48 ~~~~s~~eLA~---~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~~ 103 (131)
++.+++.+|.+ .+|+ ++..++--+.-|+..|.+.... .| |++|+-++.
T Consensus 18 g~~i~~~~Li~l~~~~Gi---~e~avRtAlsRL~~~G~L~~~~----~G-Y~LT~~~~~ 68 (247)
T 3kfw_X 18 PAWATASELIQLTADFGI---KETTLRVALTRMVGAGDLVRSA----DG-YRLSDRLLA 68 (247)
T ss_dssp TSCBCHHHHHHHHTTTTC---CHHHHHHHHHHHHHTTSEEEET----TE-EEECHHHHH
T ss_pred CCcccHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCeeccC----Cc-eeeCHHHHH
Confidence 57788877665 5677 9999999999999999999875 45 999998763
No 290
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=74.91 E-value=2.5 Score=27.29 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCC
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSS 81 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~g 81 (131)
..++|+++||..+|+ ++..+.|+.+......
T Consensus 91 ~~~~sl~~lA~~~g~---S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 91 ETPVTLEALADQVAM---SPFHLHRLFKATTGMT 121 (133)
T ss_dssp SSCCCHHHHHHHHTS---CHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHCc---CHHHHHHHHHHHHCcC
Confidence 468999999999999 9999999988665443
No 291
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=74.67 E-value=5.1 Score=26.44 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=38.8
Q ss_pred hHHHHHhCCCCCCHHHHHhh---cCC-CCCCcchHHHHHHHhhcCCceeecccCC-CCcceecchhccccc
Q 040869 40 IADIIHSHGRAITLSELVSA---LDI-QPTKTTGLFRLMRLLVHSSCFNKTKVNG-QEEAYGLTAASTLLI 105 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~---~~~-~~~~~~~l~RlLr~L~~~gl~~~~~~~~-~~~~y~~t~~s~~L~ 105 (131)
|.|+|.........+. -.+ -|+ +..+.....+++|.|.+.|++.++.... -+..+.+|+.++.+.
T Consensus 37 iidvLrGs~~~ki~~~-~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL 106 (134)
T 3aaf_A 37 PILFLRGSNSQRLADQ-YRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWL 106 (134)
T ss_dssp HHHHHTTCCCTTSCGG-GGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHH
T ss_pred hhhhhcCCcHHHHHHH-hCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHH
Confidence 7777763222222221 222 243 3347778999999999999999874100 001388899888443
No 292
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=74.46 E-value=3.3 Score=25.76 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=31.8
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
..|...+. ...|..+||+.+|+ +...++|.++.....|.+.
T Consensus 24 ~~i~~~~~---~g~s~~~ia~~lgi---s~~Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 24 LKIVEMAA---DGIRPCVISRQLRV---SHGCVSKILNRYQETGSIR 64 (128)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHHHhhCCcc
Confidence 34444443 35899999999999 9999999999887777554
No 293
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=73.60 E-value=0.59 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.-+|+..|++++++ .-+..+++||.|...|++....
T Consensus 59 KlITpsvlseRlkI---~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 59 KQITPSVLSERLRI---NGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp SSEEEHHHHHHHHT---CCHHHHHHHHHHHHHHTSCEEC
T ss_pred eEEeHHHHHhhhcc---cHHHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999 9999999999999999998763
No 294
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=73.20 E-value=2.9 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=26.1
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSC 82 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl 82 (131)
..|+.+||..+|+ ++..++|.++.....|.
T Consensus 23 g~s~~~ia~~~gI---s~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGI---NRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTS---CHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCc---CHHHHHHHHHHHhhcCc
Confidence 5899999999999 99999999987766554
No 295
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=73.16 E-value=3 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=19.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
.++|..|||+.+|+ ++..++..+
T Consensus 37 ~~~s~~EIA~~lgi---s~~tV~~~~ 59 (87)
T 1tty_A 37 KPKTLEEVGQYFNV---TRERIRQIE 59 (87)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHH
Confidence 67999999999999 888766544
No 296
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=72.72 E-value=2.7 Score=26.98 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcc-----hHHHHHHHhhcCC
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTT-----GLFRLMRLLVHSS 81 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~-----~l~RlLr~L~~~g 81 (131)
++=.|++.|. ++|+|+.|||+.+|+.|..+. .|..|-+.+-..|
T Consensus 12 ~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g 60 (105)
T 2gmg_A 12 RREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREG 60 (105)
T ss_dssp HHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 3456788886 589999999999999322222 2455556665555
No 297
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=71.22 E-value=4.9 Score=23.12 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=23.7
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
+..|+..+. ...|..|||+.+|+ ++..+++.++
T Consensus 21 e~~vl~l~~---~g~s~~eIA~~l~i---s~~tV~~~~~ 53 (79)
T 1x3u_A 21 ERQVLSAVV---AGLPNKSIAYDLDI---SPRTVEVHRA 53 (79)
T ss_dssp HHHHHHHHT---TTCCHHHHHHHTTS---CHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 344555542 46999999999999 8887765553
No 298
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=71.21 E-value=4.7 Score=24.61 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHH-HHhhcCCce
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLM-RLLVHSSCF 83 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlL-r~L~~~gl~ 83 (131)
.+..|+..+. ..+|..|||+.+|+ .+..++..+ |.+...+.-
T Consensus 31 ~e~~vl~l~~---~g~s~~eIA~~l~i---s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 31 QERTLLGLLS---EGLTNKQIADRMFL---AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHHHHHHcCC
Confidence 3445666654 46999999999999 877766433 333444433
No 299
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=71.13 E-value=3.2 Score=29.05 Aligned_cols=30 Identities=10% Similarity=0.454 Sum_probs=23.3
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
||+.+. .+.|..+||+.+|+ +...++|+++
T Consensus 168 i~~~~~---~G~s~~~Ia~~l~i---s~~tv~r~l~ 197 (209)
T 2r0q_C 168 VVEMLE---EGQAISKIAKEVNI---TRQTVYRIKH 197 (209)
T ss_dssp HHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred HHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHh
Confidence 444444 34899999999999 8889998876
No 300
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.13 E-value=5.5 Score=29.05 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=36.7
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHH-HhhcCCceeecccCCCCcceecchhcc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMR-LLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr-~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+.+.+..++|+.+|+ +...++|.|+ ++...|++.... ..+..|..+.
T Consensus 262 g~~~~~~~~a~~lgi---~~~tl~~~l~~~~i~~~li~~~~-----~g~~~~~~~~ 309 (324)
T 1hqc_A 262 GGPVGLATLATALSE---DPGTLEEVHEPYLIRQGLLKRTP-----RGRVPTELAY 309 (324)
T ss_dssp SSCCCHHHHHHHTTS---CHHHHHHHTHHHHHHTTSEEEET-----TEEEECHHHH
T ss_pred CCCchHHHHHHHhCC---CHHHHHHHHhHHHHHhcchhcCC-----ccceecHHHH
Confidence 468899999999999 9999999555 588999998764 3356666554
No 301
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=71.09 E-value=2.5 Score=28.71 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=36.2
Q ss_pred CCCHHHHHhhcC--------------CCCCCcchHHHHHHHhhcCCceeecccCCCCcceecchhcc
Q 040869 50 AITLSELVSALD--------------IQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTAAST 102 (131)
Q Consensus 50 ~~s~~eLA~~~~--------------~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~~s~ 102 (131)
+....+||+..| + +...+++.|+.|...|++.... ++.+..++.+.
T Consensus 67 ~~G~~~La~~~gg~k~~g~~p~~~~~v---Sr~tVR~AL~~Le~~GlV~~~~----~~G~~Vt~~~~ 126 (150)
T 2v7f_A 67 PVGIERLRTYYGGRKNRGHAPERFYKA---GGSIIRKALQQLEAAGFVEKVP----GKGRVITPKGR 126 (150)
T ss_dssp SBCHHHHHHHHCC----CCCTTSCCCH---HHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHH
T ss_pred CCCHHHHHHHHCCCccCCcCCcccccc---chHHHHHHHHHHHHCCCEEEeC----CCceEECCCCH
Confidence 555699999999 7 7788999999999999999865 33344555554
No 302
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=70.89 E-value=3.4 Score=23.14 Aligned_cols=24 Identities=0% Similarity=-0.006 Sum_probs=19.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
...|..|||+.+|+ ++..+++.+.
T Consensus 30 ~g~s~~eIA~~lgi---s~~tv~~~~~ 53 (70)
T 2o8x_A 30 LGLSYADAAAVCGC---PVGTIRSRVA 53 (70)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 46999999999999 8887665543
No 303
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=69.37 E-value=5 Score=26.18 Aligned_cols=42 Identities=7% Similarity=0.241 Sum_probs=32.9
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
+..|...+. ...|..+||+.+|+ +...++|.++.....|.+.
T Consensus 38 r~~iv~~~~---~G~s~~~iA~~lgi---s~~TV~rw~~~~~~~G~~~ 79 (149)
T 1k78_A 38 RQRIVELAH---QGVRPCDISRQLRV---SHGCVSKILGRYYETGSIK 79 (149)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHTC---CHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCCC
Confidence 344555554 34899999999999 9999999999887777654
No 304
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=69.02 E-value=4.2 Score=28.94 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=47.7
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh---cCCceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV---HSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~---~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|. ..-+|.+. +..+.+|+.++.|..
T Consensus 7 ~l~~f~~v~~---~gs~t~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~ 68 (306)
T 3hhg_A 7 ELTVFVQVVE---SGSFSRAAEQLAM---ANSAVSRIVKRLEEKLGVNLLNRT-----TRQLSLTEEGAQYFR 68 (306)
T ss_dssp HHHHHHHHHH---SSSHHHHHHHHTC---CHHHHHHHHHHHHHHHTSCCEETT-----SSSCEECHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHhCC---CHHHHHHHHHHHHHHhCCeeEeec-----CCCeeECHhHHHHHH
Confidence 4677888885 4589999999999 8899998888885 45688876 577999999987654
No 305
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=68.92 E-value=6.1 Score=21.92 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=25.5
Q ss_pred ChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 39 GIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
.|+..+.+ .. |..++|+++|+ .+..+.+++|
T Consensus 5 ~l~~~~~~--~g-s~~~~A~~lgi---s~~~vs~~~~ 35 (67)
T 2pij_A 5 PLSKYLEE--HG-TQSALAAALGV---NQSAISQMVR 35 (67)
T ss_dssp EHHHHHHH--TC-CHHHHHHHHTS---CHHHHHHHHH
T ss_pred HHHHHHHH--cC-CHHHHHHHHCc---CHHHHHHHHc
Confidence 46666764 34 99999999999 9999999985
No 306
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=68.91 E-value=2.2 Score=30.26 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=44.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|.. .-+|.+. +....+|+.++.|..
T Consensus 5 ~l~~f~~v~~---~gs~s~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~ 66 (294)
T 1ixc_A 5 QLKYFIAVAE---AGNMAAAAKRLHV---SQPPITRQMQALEADLGVVLLERS-----HRGIELTAAGHAFLE 66 (294)
T ss_dssp HHHHHHHHHH---HSSHHHHHHHHTC---CHHHHHHHHHHHHHHHTSCCBC----------CCBCHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHhCC---CcchHHHHHHHHHHHHCCEEEEeC-----CCCeeECHhHHHHHH
Confidence 4677888874 3589999999999 89999999988864 4688887 467899999987654
No 307
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=68.87 E-value=4.6 Score=26.35 Aligned_cols=27 Identities=7% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|..+||++.|+ ++..+|+
T Consensus 20 l~~~~G~~~~ti~~Ia~~agv---s~~t~Y~ 47 (188)
T 3qkx_A 20 LMAREGLNQLSMLKLAKEANV---AAGTIYL 47 (188)
T ss_dssp HHHHSCSTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCC---CcchHHH
Confidence 344445 57999999999999 7776663
No 308
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=68.62 E-value=9.4 Score=27.36 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+++|+.+||..+|+ +.......|..+...|++-.+.
T Consensus 166 ~g~vt~~~la~~l~w---s~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGM---SVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCEEEEC
Confidence 378999999999999 9999999999999999998874
No 309
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=67.90 E-value=7.8 Score=26.69 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCHHHHHhhcCCCCCC-cchHHHHHHHhhcCCceeec
Q 040869 51 ITLSELVSALDIQPTK-TTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~-~~~l~RlLr~L~~~gl~~~~ 86 (131)
.|..|||+++|+ . +..+.+.++.|...|.+...
T Consensus 26 ps~~elA~~lgi---ss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 26 PTRAEIAQRLGF---RSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp CCHHHHHHHTTC---SSHHHHHHHHHHHHHTTSEEEC
T ss_pred ccHHHHHHHhCC---CChHHHHHHHHHHHHCCCceeC
Confidence 499999999999 8 88999999999988877754
No 310
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=67.73 E-value=5.7 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=39.8
Q ss_pred hHHHHHhC--CCCCCHHHHHhhcCCCCCCcchHHHHHH-HhhcCCceeecccCCCCccee
Q 040869 40 IADIIHSH--GRAITLSELVSALDIQPTKTTGLFRLMR-LLVHSSCFNKTKVNGQEEAYG 96 (131)
Q Consensus 40 ifd~l~~~--~~~~s~~eLA~~~~~~~~~~~~l~RlLr-~L~~~gl~~~~~~~~~~~~y~ 96 (131)
+...+.+. ++|.++.+||+.+|. ++..+.++.. +|...|++.... .|+..
T Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~~~~---~~~t~~~~~~~~l~~~g~i~~~~----~gr~~ 316 (334)
T 1in4_A 264 ILKTIIEIYRGGPVGLNALAASLGV---EADTLSEVYEPYLLQAGFLARTP----RGRIV 316 (334)
T ss_dssp HHHHHHHHSTTCCBCHHHHHHHHTS---CHHHHHHHTHHHHHHTTSEEEET----TEEEE
T ss_pred HHHHHHHHhCCCcchHHHHHHHhCC---CcchHHHHHHHHHHHcCCeeccc----ccHHh
Confidence 44545432 678999999999999 8888888887 899999999886 56654
No 311
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=67.42 E-value=10 Score=25.99 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHhhcC--CCCCCcchHHHHHHHhh
Q 040869 47 HGRAITLSELVSALD--IQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 47 ~~~~~s~~eLA~~~~--~~~~~~~~l~RlLr~L~ 78 (131)
++.|+|.++||+.++ + ++..+..+|..|.
T Consensus 19 ~~~pvs~~~La~~~~~~~---~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKF---TPSELQEAVDELN 49 (162)
T ss_dssp CSSCBCHHHHHHHTTCCC---CHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCC---CHHHHHHHHHHHH
Confidence 368999999999999 8 8888888887775
No 312
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=67.21 E-value=3.2 Score=29.75 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=47.2
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+-|-++.|.. .-+|.+. +....+|+.++.|..
T Consensus 14 ~L~~f~~v~~---~gs~s~AA~~L~i---sq~avS~~I~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~ 75 (310)
T 2esn_A 14 LLLVFDALYR---HRNVGTAASELAI---SASAFSHALGRLRQGLDDELFLRQ-----GNRMQPTQRAEHLAA 75 (310)
T ss_dssp HHHHHHHHHH---HSSHHHHHHHHTC---CHHHHHHHHHHHHHHHTSCCEEEE-----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHhCC---ChHHHHHHHHHHHHhhCCcceeec-----CCCccccHHHHHHHH
Confidence 4567777774 3588899999999 89999999988865 4689887 477999999987654
No 313
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=67.13 E-value=4.7 Score=29.15 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=30.4
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSC 82 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl 82 (131)
+.+.|.++ ..++|+++||+.+|+ ++..|.|+.+..+...+
T Consensus 8 ~~~~i~~~~~~~~~~~~la~~~~~---s~~~l~r~f~~~~g~s~ 48 (292)
T 1d5y_A 8 LLIWLEGHLDQPLSLDNVAAKAGY---SKWHLQRMFKDVTGHAI 48 (292)
T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSS---CHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHCcCH
Confidence 34555533 368999999999999 99999998877655443
No 314
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=67.09 E-value=3.5 Score=22.50 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 13 ~g~s~~~lA~~~gi---s~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEV---SRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 56999999999999 8888887765
No 315
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=67.00 E-value=2.1 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=17.0
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
.+|..|||+.+|+ +...+.|+|
T Consensus 9 ~~t~~diA~~aGV---S~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKV---STATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTC---CHHHHHHTT
T ss_pred CCCHHHHHHHHCC---CHHHHHHHH
Confidence 4799999999998 666666554
No 316
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=66.99 E-value=8.2 Score=24.03 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=32.4
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSC 82 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl 82 (131)
++.|....- .+.+|+.|+|++-++ ++..+++-.+.....|.
T Consensus 38 Kl~VV~~~~--~g~~s~~e~arry~I---s~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 38 KAAVVKAVI--HGLITEREALDRYSL---SEEEFALWRSAVAAHGE 78 (95)
T ss_dssp HHHHHHHHH--TTSSCHHHHHHHTTC---CHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHH--cCCCCHHHHHHHhCC---CHHHHHHHHHHHHHHhH
Confidence 444444443 478999999999999 99999999999877664
No 317
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=66.99 E-value=5 Score=28.73 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh---cCCceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV---HSSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~---~~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|. ..-+|.+. ++...+|+.++.|..
T Consensus 6 ~L~~f~~v~~---~gs~t~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~-----~r~~~lT~~G~~l~~ 67 (305)
T 3fxq_A 6 TLQALICIEE---VGSLRAAAQLLHL---SQPALSAAIQQLEDELKAPLLVRT-----KRGVSLTSFGQAFMK 67 (305)
T ss_dssp HHHHHHHHHH---HSCHHHHHHHTTC---CHHHHHHHHHHHHHHHTSCSEEEC-----SSSEEECHHHHHHHH
T ss_pred HHHHHHHHHH---cCCHHHHHHHhCC---CHHHHHHHHHHHHHHhCCeeEEec-----CCCccCCHhHHHHHH
Confidence 5677888874 4589999999999 8889888888885 45689887 577999999987654
No 318
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=66.97 E-value=3.1 Score=23.79 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=22.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
.-++..|+|+.+|+ +...++|+++.
T Consensus 9 ~~l~~~eva~~lgv---srstiy~~~~~ 33 (66)
T 1z4h_A 9 SLVDLKFIMADTGF---GKTFIYDRIKS 33 (66)
T ss_dssp SEECHHHHHHHHSS---CHHHHHHHHHH
T ss_pred cccCHHHHHHHHCc---CHHHHHHHHHC
Confidence 56899999999999 99999999885
No 319
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.93 E-value=4.5 Score=25.20 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=23.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
+..|+..+. ..+|..|||+.+|+ .+..++..+
T Consensus 39 e~~Vl~l~~---~G~s~~EIA~~L~i---S~~TV~~~l 70 (99)
T 1p4w_A 39 ESEVLRLFA---EGFLVTEIAKKLNR---SIKTISSQK 70 (99)
T ss_dssp HHHHHHHHH---HTCCHHHHHHHHTS---CHHHHHHHH
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHH
Confidence 444565555 36899999999999 777765444
No 320
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=66.65 E-value=5.2 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.5
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|+.+||++.|+ ++..+|+
T Consensus 21 l~~~~G~~~~tv~~Ia~~agv---s~~t~Y~ 48 (195)
T 3ppb_A 21 LFVSQGFHGTSTATIAREAGV---ATGTLFH 48 (195)
T ss_dssp HHHHTCSTTSCHHHHHHHHTC---CHHHHHH
T ss_pred HHHhcCcccCCHHHHHHHhCC---ChhHHHH
Confidence 345445 67999999999999 7776663
No 321
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=66.43 E-value=4.5 Score=24.38 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=18.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
..+|..|||+.+|+ ++..+++.+
T Consensus 52 ~g~s~~eIA~~lgi---s~~tV~~~l 74 (92)
T 3hug_A 52 RGWSTAQIATDLGI---AEGTVKSRL 74 (92)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHH
Confidence 56999999999999 777765443
No 322
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=65.98 E-value=5 Score=26.26 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.0
Q ss_pred HHhCC-CCCCHHHHHhhcCC
Q 040869 44 IHSHG-RAITLSELVSALDI 62 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~ 62 (131)
+.+.| ..+|..+||++.|+
T Consensus 19 ~~~~G~~~~t~~~Ia~~agv 38 (191)
T 1sgm_A 19 SQLQGYHATGLNQIVKESGA 38 (191)
T ss_dssp HHHHCTTTCCHHHHHHHHCC
T ss_pred HHHcCccccCHHHHHHHHCC
Confidence 43334 57999999999999
No 323
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=65.73 E-value=3.6 Score=24.21 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRL 73 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~Rl 73 (131)
..+|..+||+++|+ ++..+.++
T Consensus 21 ~glT~~~LA~~~Gv---s~stls~~ 42 (74)
T 1neq_A 21 RKLSLSALSRQFGY---APTTLANA 42 (74)
T ss_dssp TSCCHHHHHHHHSS---CHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHH
Confidence 56999999999999 88887765
No 324
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=65.67 E-value=4.1 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ ++..+.++.+
T Consensus 20 ~glsq~~lA~~~gi---s~~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLDK---NKTTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 46899999999999 7777777665
No 325
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=65.58 E-value=8.8 Score=25.90 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=36.7
Q ss_pred ChHHHHHhCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHhhcCCceeecccCCCCcceecch
Q 040869 39 GIADIIHSHGRAITLSELVSAL-----DIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQEEAYGLTA 99 (131)
Q Consensus 39 ~ifd~l~~~~~~~s~~eLA~~~-----~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~~~~y~~t~ 99 (131)
.|.++|.+ .+-.|.+||++.+ ++ ...++.|-|+-|-...+-... |.-+|.+.+
T Consensus 9 ~I~~li~~-~~~~tq~eL~~~L~~~G~~V---tqaTisRDL~eL~~vKv~~~~----g~~~Y~lp~ 66 (149)
T 1b4a_A 9 KIREIIMS-NDIETQDELVDRLREAGFNV---TQATVSRDIKEMQLVKVPMAN----GRYKYSLPS 66 (149)
T ss_dssp HHHHHHHH-SCCCSHHHHHHHHHHTTCCC---CHHHHHHHHHHTTCEEEECSS----SCEEEECTT
T ss_pred HHHHHHHH-CCCccHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCeEEECCC----CCEEEEeCC
Confidence 46667765 4689999999999 78 888999999877444433322 134577743
No 326
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=65.29 E-value=4.7 Score=24.18 Aligned_cols=28 Identities=4% Similarity=-0.041 Sum_probs=23.8
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcC
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHS 80 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~ 80 (131)
..|+.+||+.+|+ ++..++|.++.....
T Consensus 38 g~s~~~iA~~~gI---s~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 38 GESKASVARDIGV---PESTLRGWCKNEDKL 65 (87)
T ss_dssp TCCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHhc
Confidence 3799999999999 999999999765543
No 327
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=65.07 E-value=4.3 Score=28.46 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=47.5
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhcccccc
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
.|.+|..+.+ ..|...-|+++++ ..+.+-|-++.|.. .-+|.+. ++...+|+.++.|..
T Consensus 5 ~l~~f~~v~~---~~s~t~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~ 66 (291)
T 3szp_A 5 DLNLFRLVVE---NGSYTSTSKKTMI---PVATITRRIQALEDSLNLRLLNRH-----ARKLTLTEAGERFYK 66 (291)
T ss_dssp HHHHHHHHHH---HSSHHHHHHHHTC---CHHHHHHHHHHHHHHHTCCCEEEE-----TTEEEECHHHHHHHH
T ss_pred HHHHHHHHHh---cCCHHHHHHHhCC---CHHHHHHHHHHHHHHhCCceEeec-----CCCcccCHhHHHHHH
Confidence 4667777874 4689999999999 88999988888854 5689987 577999999987764
No 328
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=64.90 E-value=6.2 Score=25.11 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCce
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCF 83 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~ 83 (131)
+.|..+||+.+|+ +...++|.++.....|..
T Consensus 22 G~s~~~ia~~lgi---s~~Tv~r~~~~~~~~g~~ 52 (141)
T 1u78_A 22 NVSLHEMSRKISR---SRHCIRVYLKDPVSYGTS 52 (141)
T ss_dssp TCCHHHHHHHHTC---CHHHHHHHHHSGGGTTCC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHcccccCCc
Confidence 4899999999999 999999999877666643
No 329
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=64.76 E-value=6.2 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=20.2
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|..+||++.|+ ++..+|+
T Consensus 16 l~~~~G~~~~t~~~Ia~~agv---s~~t~Y~ 43 (185)
T 2yve_A 16 YIGEYSLETLSYDSLAEATGL---SKSGLIY 43 (185)
T ss_dssp HHHHSCSTTCCHHHHHHHHCC---CHHHHHH
T ss_pred HHHHcChhhccHHHHHHHhCC---ChHHHHH
Confidence 345445 57999999999999 6666553
No 330
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=64.65 E-value=5.2 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=24.2
Q ss_pred HHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 29 SMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.|.+|.+ .+.+.| ...|..+||++.|+ ....+|+
T Consensus 10 ~~Il~aA~~-----lf~~~G~~~~t~~~IA~~agv---s~~tlY~ 46 (192)
T 2zcm_A 10 DKIIDNAIT-----LFSEKGYDGTTLDDISKSVNI---KKASLYY 46 (192)
T ss_dssp HHHHHHHHH-----HHHHHCTTTCCHHHHHHHTTC---CHHHHHH
T ss_pred HHHHHHHHH-----HHHHcCcccCCHHHHHHHhCC---ChHHHHH
Confidence 344555544 234334 57999999999999 6666663
No 331
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=64.49 E-value=3.2 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
.-+|++|.|+-+|+ ....+++|.+.
T Consensus 15 ~~LTi~EaAeylgI---g~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRI---GENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCS---CHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCc---CHHHHHHHHHc
Confidence 45899999999999 99999999864
No 332
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=63.91 E-value=5 Score=24.14 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
..|+..+. .+.|..|||+.+|+ ++..++..+
T Consensus 35 ~~vl~l~~---~g~s~~eIA~~l~i---s~~tV~~~l 65 (91)
T 2rnj_A 35 MEILLLIA---KGYSNQEIASASHI---TIKTVKTHV 65 (91)
T ss_dssp HHHHHHHH---TTCCTTHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHH
Confidence 34555543 46999999999999 877766444
No 333
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=63.67 E-value=5.5 Score=24.90 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
.++|..|||+.+|+ +...+..++
T Consensus 38 e~~s~~EIA~~lgi---S~~tVr~~~ 60 (99)
T 3t72_q 38 TDYTLEEVGKQFDV---TRERIRQIE 60 (99)
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHH
Confidence 68999999999999 777766544
No 334
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=63.22 E-value=5.7 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||+++|+ +...+|
T Consensus 15 ~~~~G~~~~ti~~Ia~~agv---s~~t~Y 40 (194)
T 3bqz_B 15 FIKNGYNATTTGEIVKLSES---SKGNLY 40 (194)
T ss_dssp HHHHTTTTCCHHHHHHHTTC---CHHHHH
T ss_pred HHHcCCccCCHHHHHHHhCC---CchhHH
Confidence 33334 57999999999999 666655
No 335
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=63.02 E-value=5.2 Score=26.63 Aligned_cols=26 Identities=12% Similarity=0.474 Sum_probs=19.4
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ...|.++||++.|+ +...+|+
T Consensus 25 f~e~G~~~~t~~~IA~~agv---sk~tlY~ 51 (192)
T 2fq4_A 25 LLESGFKAVTVDKIAERAKV---SKATIYK 51 (192)
T ss_dssp HHHHCTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHcCcccccHHHHHHHcCC---CHHHHHH
Confidence 33334 57999999999999 6666653
No 336
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=62.51 E-value=4.6 Score=22.17 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 17 ~g~s~~~lA~~~gi---s~~~i~~~e~ 40 (68)
T 2r1j_L 17 LKIRQAALGKMVGV---SNVAISQWER 40 (68)
T ss_dssp HTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHHc
Confidence 46899999999999 8888877764
No 337
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=62.42 E-value=7.1 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|..+||+++|+ +...+++
T Consensus 25 ~~~~G~~~~ti~~Ia~~agv---s~~t~Y~ 51 (189)
T 3vp5_A 25 FQTHSFHEAKIMHIVKALDI---PRGSFYQ 51 (189)
T ss_dssp HHHSCTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHCCcccccHHHHHHHhCC---ChHHHHH
Confidence 44444 57999999999999 7776664
No 338
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=61.81 E-value=5 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+.+|+ ++..+.++.+
T Consensus 15 ~glsq~~lA~~~gi---s~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGV---KQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHc
Confidence 56999999999999 8888888775
No 339
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=61.80 E-value=9.2 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=28.0
Q ss_pred hHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhc
Q 040869 40 IADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVH 79 (131)
Q Consensus 40 ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~ 79 (131)
|.+.|...| =..+.++||..+|+ +...+.++|+.+-.
T Consensus 37 iI~~LD~~GYL~~~l~eia~~l~~---~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 37 LLNYLNEKGFLSKSVEEISDVLRC---SVEELEKVRQKVLR 74 (76)
T ss_dssp HHHHCTTSSTTCCCHHHHHHHHTS---CHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCCCHHHHHHHcCC---CHHHHHHHHHHHhc
Confidence 445555433 24789999999999 99999999987754
No 340
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=61.75 E-value=5.3 Score=22.03 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCCCCcchHHHHHHHh
Q 040869 53 LSELVSALDIQPTKTTGLFRLMRLL 77 (131)
Q Consensus 53 ~~eLA~~~~~~~~~~~~l~RlLr~L 77 (131)
+.++|.+.|+ ++..|++.++..
T Consensus 28 ~~~vA~~~gI---s~~tl~~W~~~~ 49 (59)
T 2glo_A 28 QRATARKYNI---HRRQIQKWLQCE 49 (59)
T ss_dssp HHHHHHHTTS---CHHHHHHHHTTH
T ss_pred HHHHHHHHCc---CHHHHHHHHHHH
Confidence 9999999999 999999887643
No 341
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=61.58 E-value=8.5 Score=25.93 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=24.1
Q ss_pred HHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 29 SMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
-..+.+|.+ .+.+.| ..+|+.+||++.|+ ....+|+
T Consensus 31 ~~Il~aa~~-----lf~~~G~~~~tv~~IA~~agv---s~~t~Y~ 67 (215)
T 2qko_A 31 AALVNAAIE-----VLAREGARGLTFRAVDVEANV---PKGTASN 67 (215)
T ss_dssp HHHHHHHHH-----HHHHTCTTTCCHHHHHHHSSS---TTTCHHH
T ss_pred HHHHHHHHH-----HHHHhChhhccHHHHHHHcCC---CcchHHH
Confidence 344555543 344444 57999999999999 6666553
No 342
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=61.51 E-value=6.3 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFRL 73 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~Rl 73 (131)
+.+.| ..+|+.+||++.|+ +...+|+-
T Consensus 20 ~~~~G~~~~t~~~Ia~~agv---s~~t~Y~~ 47 (195)
T 2dg7_A 20 YSEHGYDNVTVTDIAERAGL---TRRSYFRY 47 (195)
T ss_dssp HHHSCGGGCCHHHHHHHTTC---CHHHHHHH
T ss_pred HHhcCccccCHHHHHHHhCC---CHHHHHHH
Confidence 44434 46999999999999 77777653
No 343
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=61.45 E-value=5.9 Score=25.98 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=18.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ...|.++||++.|+ .+..+|
T Consensus 15 f~~~Gy~~~s~~~Ia~~agv---skgtlY 40 (179)
T 2eh3_A 15 FFEKGYQGTSVEEIVKRANL---SKGAFY 40 (179)
T ss_dssp HHHHCSTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHcCCccCCHHHHHHHhCC---CcHHHH
Confidence 34335 57999999999999 555554
No 344
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=61.34 E-value=5.8 Score=26.30 Aligned_cols=21 Identities=5% Similarity=0.322 Sum_probs=18.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ ++..+|+
T Consensus 31 ~~~t~~~Ia~~agv---s~~t~Y~ 51 (202)
T 3lwj_A 31 YNTSIRDIIALSEV---GTGTFYN 51 (202)
T ss_dssp TTCCHHHHHHHHCS---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CchhHHH
Confidence 57999999999999 7777764
No 345
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=61.28 E-value=5.9 Score=26.12 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|..+||++.|+ ++..+|+
T Consensus 21 ~~~~G~~~~t~~~IA~~Agv---s~~tly~ 47 (194)
T 3dpj_A 21 FYRQGFAQTSFVDISAAVGI---SRGNFYY 47 (194)
T ss_dssp HHHHCTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHcCcccCCHHHHHHHHCC---ChHHHHH
Confidence 33334 57999999999999 6666663
No 346
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=61.18 E-value=6.4 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|+.+||++.|+ ++..+|+
T Consensus 27 ~~~~G~~~~ti~~Ia~~agv---s~~t~Y~ 53 (203)
T 3f1b_A 27 FSDRGFHETSMDAIAAKAEI---SKPMLYL 53 (203)
T ss_dssp HHHHCTTTCCHHHHHHHTTS---CHHHHHH
T ss_pred HHHcCcccccHHHHHHHhCC---chHHHHH
Confidence 44334 57999999999999 7776664
No 347
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=61.06 E-value=4.7 Score=22.90 Aligned_cols=24 Identities=4% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ ++..+.++.+
T Consensus 19 ~g~sq~~lA~~~gi---s~~~i~~~e~ 42 (78)
T 3b7h_A 19 QNLTINRVATLAGL---NQSTVNAMFE 42 (78)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHC
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 56999999999999 8888877764
No 348
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=61.04 E-value=7.7 Score=25.90 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 28 SSMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.-..+.+|.+ .+.+.| ..+|+.+||++.|+ +...+|+
T Consensus 33 r~~Il~aa~~-----l~~~~G~~~~tv~~Ia~~agv---s~~t~Y~ 70 (218)
T 3dcf_A 33 RTQIIKVATE-----LFREKGYYATSLDDIADRIGF---TKPAIYY 70 (218)
T ss_dssp HHHHHHHHHH-----HHHHTCTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHHHHHHHH-----HHHHcCcccCcHHHHHHHhCC---CHHHHHH
Confidence 3444555544 344445 57999999999999 6666663
No 349
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=60.85 E-value=5.4 Score=25.83 Aligned_cols=27 Identities=7% Similarity=0.274 Sum_probs=20.3
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|..+||++.|+ +...+|+
T Consensus 16 l~~~~G~~~~t~~~Ia~~agv---s~~t~Y~ 43 (170)
T 3egq_A 16 LYMKKPPHEVSIEEIAREAKV---SKSLIFY 43 (170)
T ss_dssp HHTTSCGGGCCHHHHHHHHTS---CHHHHHH
T ss_pred HHHhcCCccCcHHHHHHHhCC---CchhHHH
Confidence 455444 46999999999999 7776664
No 350
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.70 E-value=5 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=20.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 17 ~gls~~~lA~~~gi---s~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGV---SNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 46899999999999 8888877765
No 351
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=60.66 E-value=6.1 Score=26.11 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=23.0
Q ss_pred HHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 31 SLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+|.++ +.+.| ...|.++||++.|+ ....+|+
T Consensus 8 Il~aA~~l-----f~~~G~~~~s~~~IA~~agv---sk~t~Y~ 42 (190)
T 3vpr_A 8 ILEEAAKL-----FTEKGYEATSVQDLAQALGL---SKAALYH 42 (190)
T ss_dssp HHHHHHHH-----HHHHCSTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHHHHHH-----HHHhCcccCCHHHHHHHhCC---CHHHHHH
Confidence 44555442 33334 57999999999999 6666654
No 352
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=60.65 E-value=6.9 Score=22.77 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ ++..+.++.+
T Consensus 24 ~glsq~~lA~~~gi---s~~~i~~~e~ 47 (88)
T 2wiu_B 24 NGWTQSELAKKIGI---KQATISNFEN 47 (88)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHc
Confidence 56999999999999 8888887776
No 353
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=60.55 E-value=5.6 Score=22.25 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=20.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 25 ~g~s~~~lA~~~gi---s~~~i~~~e~ 48 (74)
T 1y7y_A 25 KGLSQETLAFLSGL---DRSYVGGVER 48 (74)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHC
Confidence 56999999999999 8888877764
No 354
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=60.40 E-value=5.6 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 22 ~glsq~~lA~~~gi---s~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGL---HRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHHC
Confidence 56999999999999 8888888764
No 355
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=60.14 E-value=8.1 Score=25.96 Aligned_cols=26 Identities=12% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
++.+.| ..+|..+||++.|+ ....+|
T Consensus 42 l~~~~G~~~~t~~~IA~~aGv---s~~t~Y 68 (222)
T 3bru_A 42 HLTEKGYSSVGVDEILKAARV---PKGSFY 68 (222)
T ss_dssp HHHHSCTTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHHcCCCcCcHHHHHHHhCC---Ccchhh
Confidence 345445 57999999999999 666655
No 356
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=60.07 E-value=7.9 Score=25.49 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=19.2
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||++.|+ +...+|
T Consensus 30 ~~~~G~~~~s~~~Ia~~agv---s~~t~Y 55 (206)
T 3kz9_A 30 FARRGIGRGGHADIAEIAQV---SVATVF 55 (206)
T ss_dssp HHHSCCSSCCHHHHHHHHTS---CHHHHH
T ss_pred HHhcCcccccHHHHHHHhCC---CHHHHH
Confidence 44445 57999999999999 666665
No 357
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=60.07 E-value=5.7 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+.+|+ ++..+.++.+
T Consensus 13 ~glsq~~lA~~~gi---s~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGT---TQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 56999999999999 8888888765
No 358
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=59.87 E-value=5.8 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 22 ~g~s~~~lA~~~gi---s~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGK---SENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 56999999999999 8888877764
No 359
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=59.84 E-value=9 Score=22.72 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=37.3
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcch-HHHHHHHhhcCCceeec
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTG-LFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~-l~RlLr~L~~~gl~~~~ 86 (131)
+-.|.+.|.. .||.++-.||+.+|. .... +.+-|=.+...|++.-+
T Consensus 12 ee~I~~fL~~-~Gp~~AL~IAK~LGl---ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKD-NGPQRALVIAQALGM---RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHH-HCSEEHHHHHHHTTC---CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHH-cCCchHHHHHHHhCc---chhhhcCHHHHHHHHccCcCCC
Confidence 4457888875 479999999999999 5555 88888889999999654
No 360
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=59.79 E-value=9.1 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ ++..+.++.+
T Consensus 30 ~glsq~elA~~~gi---s~~~is~~e~ 53 (83)
T 2a6c_A 30 SGLTQFKAAELLGV---TQPRVSDLMR 53 (83)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 57999999999999 7777777665
No 361
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=59.60 E-value=7 Score=26.03 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=24.2
Q ss_pred HHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 29 SMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
-..+.+|.++ +.+.| ..+|..+||++.|+ +...+|+
T Consensus 21 ~~Il~aa~~l-----~~~~G~~~~s~~~Ia~~agv---s~~t~Y~ 57 (212)
T 1pb6_A 21 KAILSAALDT-----FSQFGFHGTRLEQIAELAGV---SKTNLLY 57 (212)
T ss_dssp HHHHHHHHHH-----HHHHCTTTCCHHHHHHHTTS---CHHHHHH
T ss_pred HHHHHHHHHH-----HHHcCcchhhHHHHHHHHCC---ChhHHHH
Confidence 3445555443 33334 57999999999999 7777664
No 362
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=59.26 E-value=6.6 Score=27.86 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=40.4
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
-.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|.. .-+|.+.. +....+|+.++.|..
T Consensus 7 ~~l~~f~~v~~---~~s~s~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~~----~~~~~lT~~G~~l~~ 70 (306)
T 3fzv_A 7 RQLKYFVTTVE---CGSVAEASRKLYI---AQPSISTAVKGLEESFGVQLFIRHH----AQGVSLTPAGARFYR 70 (306)
T ss_dssp HHHHHHHHHHH---SSSHHHHHHHHTC---CC-CHHHHHHHHHHHC-CCCC-------------CCHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCHHHHHHHhCC---CchHHHHHHHHHHHHhCCeeEeecC----CCCceECHhHHHHHH
Confidence 35677888884 4689999999999 88888888888854 45888752 366899999987654
No 363
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=59.13 E-value=8.8 Score=25.71 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=20.3
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
++.+.| ...|..+||++.|+ +...+|+
T Consensus 29 l~~~~G~~~~t~~~IA~~agv---s~~t~Y~ 56 (218)
T 3gzi_A 29 LFIERPYAQVSIREIASLAGT---DPGLIRY 56 (218)
T ss_dssp HHHTSCCSCCCHHHHHHHHTS---CTHHHHH
T ss_pred HHHHCCCCcCCHHHHHHHhCC---CHHHHHH
Confidence 345445 57999999999999 7776664
No 364
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=59.11 E-value=8.8 Score=21.27 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.0
Q ss_pred CCCCHHHHHhhcC--CCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALD--IQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~--~~~~~~~~l~RlLr 75 (131)
..+|..++|+++| + ++..+.++.+
T Consensus 20 ~glsq~~lA~~~g~~i---s~~~i~~~e~ 45 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRW---KAVVVGSYER 45 (71)
T ss_dssp TTCCHHHHHHHTTTSS---CHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcC---CHHHHHHHHC
Confidence 5699999999999 8 7777777665
No 365
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.00 E-value=1.6 Score=32.63 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhh------cCCceeecccCCCCcceecchhccccccCc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLV------HSSCFNKTKVNGQEEAYGLTAASTLLIKDK 108 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~------~~gl~~~~~~~~~~~~y~~t~~s~~L~~~~ 108 (131)
....|..|||++.|+ +..++.|.|+--- ...+...-. .-.|..++..+.|....
T Consensus 10 ~~~~ti~diA~~agV---S~~TVSr~Ln~~~~vs~~tr~rV~~~a~----~lgY~pn~~a~~l~~~~ 69 (355)
T 3e3m_A 10 HRPVTMRDVAKAAGV---SRMTVSRALKKDSPISSETRERILKVVK----DMNYVPDQVAGSLTTKR 69 (355)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCcHHHHHHHhCC---CHHHHHHHHCCCCCCCHHHHHHHHHHHH----HhCCCcCHHHHhhhcCC
Confidence 357899999999999 8899999887431 111222111 34588887777665443
No 366
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.89 E-value=5.6 Score=22.78 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ +...+.++.+
T Consensus 14 ~glsq~~lA~~~gi---s~~~i~~~e~ 37 (77)
T 2k9q_A 14 LSLTAKSVAEEMGI---SRQQLCNIEQ 37 (77)
T ss_dssp HTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHc
Confidence 46999999999999 7777777654
No 367
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=58.82 E-value=7.2 Score=25.98 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|..+||++.|+ +...+|+
T Consensus 30 ~~~~G~~~~ti~~Ia~~agv---s~~t~Y~ 56 (207)
T 2rae_A 30 FTEQGFDATSVDEVAEASGI---ARRTLFR 56 (207)
T ss_dssp HHHHCTTTSCHHHHHHHTTS---CHHHHHH
T ss_pred HHHcCcccCCHHHHHHHhCC---CcchHhh
Confidence 44334 57999999999999 6666553
No 368
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=58.81 E-value=7.6 Score=24.55 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=24.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVH 79 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~ 79 (131)
..+|-+|||+++|+ +...+.|+|+....
T Consensus 33 ~g~tQ~eIA~~lGi---SR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 33 DGKPQATFATSLGL---TRGAVSQAVHRVWA 60 (101)
T ss_dssp TCCCHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 57999999999999 99999999987654
No 369
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=58.72 E-value=0.93 Score=33.59 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhh------cCCceeecccCCCCcceecchhccccccC
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLV------HSSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~------~~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
+..|..|||++.|+ +..++.|.|+--- ...+...-. .-.|..++..+.|...
T Consensus 3 ~~~ti~diA~~agV---S~~TVSr~Ln~~~~vs~~tr~rV~~~~~----~lgY~pn~~a~~l~~~ 60 (339)
T 3h5o_A 3 LGVTMHDVAKAAGV---SAITVSRVLNQPQQVSEQLREKVMQAVD----ALAYVPSRSASTLASA 60 (339)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHcCCCCCCHHHHHHHHHHHH----HhCCCcCHHHHhhhcC
Confidence 35799999999999 8889998887421 111222111 3458777777666544
No 370
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=58.67 E-value=7.8 Score=26.03 Aligned_cols=20 Identities=10% Similarity=0.328 Sum_probs=16.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 30 ~~~s~~~IA~~aGv---skgtlY 49 (210)
T 2xdn_A 30 ARTTLADIAELAGV---TRGAIY 49 (210)
T ss_dssp TTCCHHHHHHHHTC---CTTHHH
T ss_pred ccCcHHHHHHHHCC---ChHHHH
Confidence 57999999999999 666655
No 371
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.42 E-value=4 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=23.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
+.-+|+.|+|+.+|+ +...+++++|.
T Consensus 29 ~~~LTv~EVAe~LgV---s~srV~~LIr~ 54 (148)
T 2kfs_A 29 EPTYDLPRVAELLGV---PVSKVAQQLRE 54 (148)
T ss_dssp SCEEEHHHHHHHHTC---CHHHHHHHHHT
T ss_pred CceEcHHHHHHHhCC---CHHHHHHHHHC
Confidence 357999999999999 99999998874
No 372
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=58.28 E-value=15 Score=26.71 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=33.7
Q ss_pred hChHHHHHhCCCCCCHHHHHh----hcC--CCCCCcchHHHHHHHhhcCCceeec
Q 040869 38 LGIADIIHSHGRAITLSELVS----ALD--IQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~----~~~--~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
..++..++. ++ +..+|++ .+| + +...+.+.|+.|...|++...
T Consensus 293 ~~~l~~la~--g~-~~~~l~~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 293 LNIMRTLSK--CG-KWSDVKRALELEEGIEI---SDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp HHHHHHHTT--CB-CHHHHHHHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHc--CC-CHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEec
Confidence 346666664 45 8999984 457 7 778899999999999999876
No 373
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=58.25 E-value=5.5 Score=26.48 Aligned_cols=20 Identities=0% Similarity=0.072 Sum_probs=16.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 28 ~~~ti~~IA~~agv---s~~t~Y 47 (193)
T 2dg8_A 28 ARVSHRRIAQRAGV---PLGSMT 47 (193)
T ss_dssp GGCCHHHHHHHHTS---CTHHHH
T ss_pred hhccHHHHHHHhCC---Cchhhh
Confidence 46999999999999 666665
No 374
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=58.24 E-value=6.3 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+++|+ +...+.++.+
T Consensus 22 ~gltq~elA~~~gi---s~~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAGV---AKSYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 56999999999999 8888887765
No 375
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=58.07 E-value=25 Score=22.27 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=42.2
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.-++..++=.|.+...... ..+|..+....+.- |...+.|+.++|...|++...
T Consensus 46 pe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g---Dv~~i~RVh~FLe~wGLIN~~ 100 (104)
T 2fq3_A 46 PEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG---DAAALFRLHKFLTKWGLINYQ 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS---CHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc---cHHHHHHHHHHHHHcCeeccC
Confidence 4455556656666665443 67999999999877 999999999999999998753
No 376
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=57.89 E-value=7.2 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 33 ~~~ti~~IA~~agv---s~~t~Y~ 53 (212)
T 3knw_A 33 VGVGLQEILKTSGV---PKGSFYH 53 (212)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---ChHHHHH
Confidence 57999999999999 7776663
No 377
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=57.87 E-value=7.2 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 33 ~~~ti~~Ia~~agv---s~~t~Y~ 53 (220)
T 3lhq_A 33 SATSLAEIANAAGV---TRGAIYW 53 (220)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---Cceeehh
Confidence 56999999999999 6666653
No 378
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=57.72 E-value=4.8 Score=32.09 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=39.3
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
.+.+++.|.=++|..|+-|||+++|+ +-..+.-..+.|...|++.
T Consensus 389 ~~~~l~~L~~~dG~~slldia~~~~~---~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 389 EFAMFWVLNMSDGKNSLLDIAYKSGM---EFRRIKYAADALYRVELLK 433 (435)
T ss_dssp HHHHHHHHHHCEEEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhccCCccHHHHHHHhCc---CHHHHHHHHHHHHHccCcc
Confidence 34577777766789999999999999 9999999999999999986
No 379
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=57.58 E-value=15 Score=28.04 Aligned_cols=42 Identities=7% Similarity=0.021 Sum_probs=35.6
Q ss_pred HHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeec
Q 040869 42 DIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKT 86 (131)
Q Consensus 42 d~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~ 86 (131)
.+++--++..|.+||.+.+++ ++..+..++..|...|++...
T Consensus 43 ~l~p~ldG~~tl~ei~~~l~~---~~~~v~~~i~~L~~~g~l~~~ 84 (353)
T 3h5n_A 43 KTAYCFITPSSYTAALETANI---PEKDFSNCFRFLKENFFIIPG 84 (353)
T ss_dssp HHHHTTSSCBCHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEG
T ss_pred HHHHHhcCCCCHHHHHHHcCC---CHHHHHHHHHHHHHCCCEeeC
Confidence 334434588999999999998 999999999999999988854
No 380
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=57.48 E-value=6.9 Score=26.17 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=15.9
Q ss_pred HHHhCC-CCCCHHHHHhhcCC
Q 040869 43 IIHSHG-RAITLSELVSALDI 62 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~ 62 (131)
.+.+.| ...|.++||++.|+
T Consensus 26 lf~~~G~~~~s~~~Ia~~agv 46 (203)
T 3ccy_A 26 MFARQGYSETSIGDIARACEC 46 (203)
T ss_dssp HHHHTCTTTSCHHHHHHHTTC
T ss_pred HHHHcCcccCCHHHHHHHhCC
Confidence 344445 67999999999999
No 381
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=57.47 E-value=5.7 Score=25.94 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ ++..+|+
T Consensus 29 ~~~t~~~IA~~agv---s~~t~Y~ 49 (191)
T 3on4_A 29 NAFSFKDIATAINI---KTASIHY 49 (191)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---Ccchhhh
Confidence 46999999999999 7776664
No 382
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=57.40 E-value=5.8 Score=25.92 Aligned_cols=20 Identities=5% Similarity=0.378 Sum_probs=16.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ ++..++
T Consensus 27 ~~~ti~~Ia~~agv---s~~t~Y 46 (194)
T 2g7s_A 27 NSFSYADISQVVGI---RNASIH 46 (194)
T ss_dssp GGCCHHHHHHHHCC---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CchHHH
Confidence 56999999999999 666655
No 383
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=57.28 E-value=5.9 Score=26.05 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=18.7
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|+.+||++.|+ ++..+|
T Consensus 24 f~~~G~~~~tv~~Ia~~agv---s~~t~Y 49 (196)
T 3he0_A 24 IAESGFQGLSMQKLANEAGV---AAGTIY 49 (196)
T ss_dssp HHHHCTTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHhCcccCCHHHHHHHhCC---CcchHH
Confidence 44334 57999999999999 666655
No 384
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=57.14 E-value=7.4 Score=26.34 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=19.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ...|.++||++.|+ ....+|+
T Consensus 35 f~e~G~~~~s~~~IA~~AGV---sk~tlY~ 61 (207)
T 3bjb_A 35 ATEKELARVQMHEVAKRAGV---AIGTLYR 61 (207)
T ss_dssp HHHSCGGGCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHcCcccCCHHHHHHHhCC---CHHHHHH
Confidence 44444 56999999999999 7777664
No 385
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=56.99 E-value=11 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..|||+++|+ ++..+.++.+
T Consensus 36 ~glTq~eLA~~~Gi---S~~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVGV---SKSTFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 57999999999999 8888877765
No 386
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=56.98 E-value=7.3 Score=26.70 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|+.+||++.|+ ++..+|+
T Consensus 51 lf~e~G~~~~tv~~IA~~AGv---s~~tlY~ 78 (214)
T 2guh_A 51 AFATRPYREITLKDIAEDAGV---SAPLIIK 78 (214)
T ss_dssp HHHHSCGGGCCHHHHHHHHTS---CHHHHHH
T ss_pred HHHHcChhhcCHHHHHHHhCC---CHHHHHH
Confidence 455445 56999999999999 7777775
No 387
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=56.81 E-value=9.8 Score=25.63 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ...|.++||++.|+ ....+|
T Consensus 24 f~~~G~~~~s~~~IA~~aGv---skgtlY 49 (210)
T 2wui_A 24 FLEKGVGTTAMADLADAAGV---SRGAVY 49 (210)
T ss_dssp HHHSCTTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHcCccccCHHHHHHHhCC---CHHHHH
Confidence 44445 57999999999999 555555
No 388
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=56.78 E-value=23 Score=26.65 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=41.0
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcc--hHHHHHHHhhcCCceeecccC-CCCcce
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTT--GLFRLMRLLVHSSCFNKTKVN-GQEEAY 95 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~--~l~RlLr~L~~~gl~~~~~~~-~~~~~y 95 (131)
+++.+.+.+++.|..||-..-.. ..- .+..+|+.|+..|++++.... .|.+.|
T Consensus 227 Ll~~m~ek~~~wS~~Ei~~~p~~---~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~ 282 (290)
T 3c18_A 227 LFEVMRERDRPWTMHELMEESRL---TELKVDLGSLVDFFIRKGLIRISYQRTKGLGVE 282 (290)
T ss_dssp HHHHHTTSSSCEEHHHHHHCGGG---GGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEE
T ss_pred HHHHHHhcCCCCCHHHHhcCccc---ccccCCHHHHHHHHHHcCCeEEecccCCCCcEE
Confidence 68888876789999999998777 333 488999999999999987543 234444
No 389
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=56.69 E-value=7.1 Score=33.02 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK 85 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~ 85 (131)
...+|++||++.+|+ +...|.|.|..|+..|++..
T Consensus 601 ~~~~t~~ei~~~t~i---~~~~l~r~L~~l~k~~iL~~ 635 (760)
T 1ldj_A 601 EDAYTVQQLTDSTQI---KMDILAQVLQILLKSKLLVL 635 (760)
T ss_dssp SSEEEHHHHHHHTCC---CHHHHHHHHHHHHHTTTEEC
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCccee
Confidence 357999999999999 99999999999999999983
No 390
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=56.67 E-value=8.4 Score=25.69 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
...|.++||++.|+ .+..+|+
T Consensus 31 ~~~s~~~IA~~aGv---s~~tlY~ 51 (197)
T 2hyt_A 31 ADTSMDDLTAQASL---TRGALYH 51 (197)
T ss_dssp TTCCHHHHHHHHTC---CTTHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHHH
Confidence 57999999999999 6676664
No 391
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=56.62 E-value=17 Score=26.23 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 47 HGRAITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 47 ~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
++.|+|..+||+.+++ +...+..+|..|.
T Consensus 27 a~epvs~~~La~~l~~---~~~~v~~~l~~L~ 55 (219)
T 2z99_A 27 IDTPVTADALAAATEQ---PVYRVAAKLQLMA 55 (219)
T ss_dssp CSSCBCHHHHHHHHTS---CHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 3689999999999999 8888888888775
No 392
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=56.59 E-value=6.3 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=18.5
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||++.|+ +...+|
T Consensus 24 f~~~G~~~~s~~~Ia~~agv---s~~t~Y 49 (203)
T 3b81_A 24 FIANGYENTTLAFIINKLGI---SKGALY 49 (203)
T ss_dssp HHHHCSTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHcCcccCcHHHHHHHhCC---CchhHH
Confidence 43334 57999999999999 666555
No 393
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=56.47 E-value=6.3 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||++.|+ ++..++
T Consensus 20 ~~~~G~~~~t~~~IA~~agv---s~~t~Y 45 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGL---EKGGIY 45 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHhCcCcCCHHHHHHHhCC---CccHHH
Confidence 44334 57999999999999 666655
No 394
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=56.42 E-value=8.5 Score=25.76 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 29 SMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 29 ~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
-..|.+|.++ +.+.| ...|.++||++.|+ ....+|
T Consensus 17 ~~Il~aA~~l-----f~~~G~~~~s~~~IA~~agv---s~~tlY 52 (204)
T 2ibd_A 17 TELLDIAATL-----FAERGLRATTVRDIADAAGI---LSGSLY 52 (204)
T ss_dssp HHHHHHHHHH-----HHHHCSTTCCHHHHHHHTTS---CHHHHH
T ss_pred HHHHHHHHHH-----HHHcCchhcCHHHHHHHhCC---CchhHH
Confidence 3445555442 33334 57999999999999 555544
No 395
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=56.37 E-value=1.9 Score=31.94 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-----CCCcceecchhccccccCc
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-----GQEEAYGLTAASTLLIKDK 108 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-----~~~~~y~~t~~s~~L~~~~ 108 (131)
+..|..|||++.|+ +..++.|.|+- .+-+.+.... -..-.|..++..+.|....
T Consensus 5 ~~~ti~diA~~agV---S~~TVSr~Ln~---~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~ 63 (333)
T 3jvd_A 5 AKSSLKEVAELAGV---GYATASRALSG---KGYVSPQTREKVQAAAKELNYVPNQLAKALREHR 63 (333)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHcC---CCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhcCC
Confidence 46799999999999 88999988873 2222222110 0134588777776665443
No 396
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=56.34 E-value=6.1 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.547 Sum_probs=19.6
Q ss_pred HHhCCCCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHGRAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| .+|..+||+++|+ .+..+|+
T Consensus 24 ~~~~G-~~s~~~IA~~aGv---s~~tlY~ 48 (213)
T 2g7g_A 24 VDRDG-DFRMPDLARHLNV---QVSSIYH 48 (213)
T ss_dssp HHHHS-SCCHHHHHHHTTS---CHHHHHT
T ss_pred HHHcC-CCCHHHHHHHhCC---CHhHHHH
Confidence 33335 8999999999999 7777664
No 397
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=56.31 E-value=4.8 Score=26.13 Aligned_cols=25 Identities=8% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||++.|+ +...+|
T Consensus 25 ~~~~G~~~~tv~~Ia~~agv---s~~t~Y 50 (177)
T 3kkc_A 25 LQENDYSKITVQDVIGLANV---GRSTFY 50 (177)
T ss_dssp TTTSCTTTCCHHHHHHHHCC---CHHHHT
T ss_pred HHhCChhHhhHHHHHHHhCC---cHhhHH
Confidence 44434 57999999999999 555443
No 398
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=56.17 E-value=3.3 Score=23.70 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccCCC---Ccceecchhcccccc
Q 040869 51 ITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVNGQ---EEAYGLTAASTLLIK 106 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~~~---~~~y~~t~~s~~L~~ 106 (131)
+|..|+|+.+|+ ++.+|+|..+. |.-.... .| .-.|....+-+++..
T Consensus 3 lt~~e~a~~Lgv---S~~Tl~rw~~~----G~P~~~~--~g~~~~~~y~~~dv~~wl~~ 52 (68)
T 1j9i_A 3 VNKKQLADIFGA---SIRTIQNWQEQ----GMPVLRG--GGKGNEVLYDSAAVIKWYAE 52 (68)
T ss_dssp EEHHHHHHHTTC---CHHHHHHHTTT----TCCCSSC--CCSSSCCEEEHHHHHHHHTT
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHC----CCCeEee--CCCcceEEECHHHHHHHHHH
Confidence 578999999999 99999998764 5511111 11 224777776666653
No 399
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=56.13 E-value=2.4 Score=30.73 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|.. .-+|.+. ++...+|+.++.|...
T Consensus 5 ~L~~F~~va~---~gs~s~AA~~L~i---sq~avS~~I~~LE~~lg~~Lf~R~-----~r~~~lT~~G~~l~~~ 67 (312)
T 2h9b_A 5 HLRYFVAVVE---EQSFTKAADKLCI---AQPPLSRQIQNLEEELGIQLLERG-----SRPVKTTPEGHFFYQY 67 (312)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHH---hCCHHHHHHHhcC---CccHHHHHHHHHHHHhCCEeEeeC-----CCCceECHHHHHHHHH
Confidence 4677877874 4578888999999 88888888888865 3588876 4678999999876543
No 400
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=55.94 E-value=8.1 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=19.9
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|..+||++.|+ +...+|+
T Consensus 20 lf~~~G~~~~t~~~IA~~agv---s~~tlY~ 47 (199)
T 2o7t_A 20 LYRTHHHDSLTMENIAEQAGV---GVATLYR 47 (199)
T ss_dssp HHHHSCGGGCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHHCCCccCCHHHHHHHhCC---CHHHHHH
Confidence 344444 56999999999999 6666653
No 401
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=55.88 E-value=6.5 Score=25.67 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|..+||++.|+ ++..++
T Consensus 26 ~~~s~~~IA~~agv---s~~tly 45 (180)
T 2fd5_A 26 VEPSVGEVMGAAGL---TVGGFY 45 (180)
T ss_dssp TSCCHHHHHHHTTC---CGGGGG
T ss_pred ccCCHHHHHHHhCC---CccHHH
Confidence 57999999999999 555443
No 402
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=55.70 E-value=8.7 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 20 ~gltq~~lA~~~gi---s~~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEI---APSTASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHc
Confidence 45899999999999 8888888776
No 403
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=55.53 E-value=8.2 Score=25.80 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 28 ~~~t~~~Ia~~Agv---s~gt~Y 47 (204)
T 3anp_C 28 QETTATEIAKAAHV---SRGTFF 47 (204)
T ss_dssp TTCCHHHHHHHHTS---CHHHHH
T ss_pred ccccHHHHHHHcCC---chHHHH
Confidence 57999999999999 555544
No 404
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=55.53 E-value=12 Score=23.64 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=27.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
+..|.+.+.+ .+..+..+||+.+|+ ++..|+++++.-.
T Consensus 13 K~~iv~~~~~-~g~~~~~~~A~~~gv---s~stl~~~~~~~~ 50 (131)
T 1hlv_A 13 KSRIIQEVEE-NPDLRKGEIARRFNI---PPSTLSTILKNKR 50 (131)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTC---CHHHHHHHHHTHH
T ss_pred HHHHHHHHHH-CCCCcHHHHHHHhCC---CHHHHHHHHhchh
Confidence 3445555533 344566799999999 9999999987543
No 405
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=55.46 E-value=8.2 Score=25.97 Aligned_cols=21 Identities=0% Similarity=0.131 Sum_probs=17.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
...|..+||++.|+ ....+|+
T Consensus 27 ~~~s~~~IA~~aGv---s~~tiY~ 47 (202)
T 2d6y_A 27 AGARIDRIAAEARA---NKQLIYA 47 (202)
T ss_dssp TSCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHHH
Confidence 57999999999999 7777664
No 406
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=55.43 E-value=6.8 Score=22.61 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..|+|+++|+ ++..+.++.+
T Consensus 26 ~gltq~elA~~~gi---s~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGR---PQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHC
Confidence 46999999999999 8887777765
No 407
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=55.30 E-value=8.2 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 30 ~~~ti~~Ia~~agv---s~~t~Y 49 (216)
T 3f0c_A 30 CKTTMNEIASDVGM---GKASLY 49 (216)
T ss_dssp SSCCHHHHHHHHTC---CHHHHH
T ss_pred CcCCHHHHHHHhCC---CHHHHH
Confidence 57999999999999 666655
No 408
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=55.29 E-value=6.5 Score=25.89 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 27 ~~~t~~~Ia~~agv---s~~t~Y~ 47 (206)
T 3dew_A 27 YGVSIRELAQAAGA---SISMISY 47 (206)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCcHHHHHHHhCC---CHHHHHH
Confidence 47999999999999 7777664
No 409
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=55.26 E-value=23 Score=22.77 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=36.4
Q ss_pred HHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCc
Q 040869 31 SLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSC 82 (131)
Q Consensus 31 aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl 82 (131)
+-+.......++.+. .++|++|||+.-|+ ....+..-|-.++..|.
T Consensus 16 ~~k~~t~~~t~~l~~---~G~sleeIA~~R~L---~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 16 ANKSKMKVSIVQQID---RKVALDDIAVSHGL---DFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHHHHHHHHHHHHH---TTCCHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred cCCCccHHHHHHHHH---cCCCHHHHHHHcCC---CHHHHHHHHHHHHHcCC
Confidence 334445566677676 57999999999999 99999888888888885
No 410
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=55.23 E-value=8.7 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=18.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
..+|..|||+.+|+ ++..+++.+
T Consensus 123 ~g~s~~EIA~~lgi---s~~tV~~~~ 145 (164)
T 3mzy_A 123 RGYSYREIATILSK---NLKSIDNTI 145 (164)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHH
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHH
Confidence 57999999999999 877765444
No 411
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=55.13 E-value=2.1 Score=31.52 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=0.4
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-----CCCcceecchhccccccCc
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-----GQEEAYGLTAASTLLIKDK 108 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-----~~~~~y~~t~~s~~L~~~~ 108 (131)
..|..|||++.|+ +..++.|.|+-- +-+.+.... -..-.|..++..+.|....
T Consensus 3 ~~ti~diA~~agV---S~~TVSrvln~~---~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~ 60 (338)
T 3dbi_A 3 LTTMLEVAKRAGV---SKATVSRVLSGN---GYVSQETKDRVFQAVEESGYRPNLLARNLSAKS 60 (338)
T ss_dssp ---------------------------------------------------------------C
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHCCC---CCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCC
Confidence 3689999999999 889999988752 222222110 0134588888777666543
No 412
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=55.08 E-value=6 Score=26.32 Aligned_cols=26 Identities=15% Similarity=0.514 Sum_probs=18.4
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
.+.+.| ..+|.++||++.|+ ....+|
T Consensus 25 lf~~~G~~~~tv~~Ia~~agv---s~~t~Y 51 (195)
T 2iu5_A 25 LMQSNAYHQISVSDIMQTAKI---RRQTFY 51 (195)
T ss_dssp HHHHSCGGGCCHHHHHHHHTS---CGGGGG
T ss_pred HHHhCCCCeeCHHHHHHHhCC---CHHHHH
Confidence 344434 46999999999999 555544
No 413
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=54.84 E-value=8 Score=22.31 Aligned_cols=24 Identities=4% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|-.++|+++|+ +...+.++.+
T Consensus 24 ~gltq~~lA~~~gv---s~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGM---GQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHhCc---CHHHHHHHHc
Confidence 46899999999999 7777777664
No 414
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=54.78 E-value=7.8 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 23 ~glsq~~lA~~~gi---s~~~i~~~e~ 46 (82)
T 3s8q_A 23 KGMTQEDLAYKSNL---DRTYISGIER 46 (82)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHhCc---CHHHHHHHHC
Confidence 56999999999999 8888777754
No 415
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=54.77 E-value=5.1 Score=26.54 Aligned_cols=41 Identities=10% Similarity=0.255 Sum_probs=31.4
Q ss_pred hChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCcee
Q 040869 38 LGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFN 84 (131)
Q Consensus 38 L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~ 84 (131)
..|...+. ...|..+||+.+|+ +...++|.++.....|.+.
T Consensus 32 ~~ii~l~~---~G~s~~~IA~~lgi---s~~TV~rwl~r~~~~G~~~ 72 (159)
T 2k27_A 32 QRIVDLAH---QGVRPCDISRQLRV---SHGCVSKILGRYYETGSIR 72 (159)
T ss_dssp HHHHHHHH---HTCCHHHHHHHHTC---CSHHHHHHHCCSSTTSCCC
T ss_pred HHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHHHhcCCcc
Confidence 34444443 24899999999999 9999999998877767654
No 416
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=54.75 E-value=8.4 Score=25.30 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=18.7
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| . .|..+||++.|+ ++..+|+
T Consensus 22 f~~~G~~-~t~~~IA~~aGv---s~~tly~ 47 (190)
T 3jsj_A 22 TYRDGVG-IGVEALCKAAGV---SKRSMYQ 47 (190)
T ss_dssp HHHHCTT-CCHHHHHHHHTC---CHHHHHH
T ss_pred HHHhCcc-ccHHHHHHHhCC---CHHHHHH
Confidence 44335 7 999999999999 6666653
No 417
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=54.74 E-value=9.2 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| . .|..+||++.|+ ....+|+
T Consensus 28 f~~~G~~-~s~~~IA~~agv---s~~tlY~ 53 (194)
T 2q24_A 28 FSEEGLD-AHLERIAREAGV---GSGTLYR 53 (194)
T ss_dssp HHHHCTT-CCHHHHHHHTTC---CHHHHHH
T ss_pred HHhcCcC-CCHHHHHHHhCC---ChHHHHH
Confidence 33334 5 999999999999 6666653
No 418
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=54.52 E-value=11 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhhc-----CCceeec
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLVH-----SSCFNKT 86 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~-----~gl~~~~ 86 (131)
..+|++||++.+|+ +...|.|.|..|+. .+++...
T Consensus 214 ~~lt~~ei~~~t~i---~~~~L~r~L~sL~~~~k~k~~iL~~~ 253 (382)
T 3dpl_C 214 EKISFENLKLATEL---PDAELRRTLWSLVAFPKLKRQVLLYE 253 (382)
T ss_dssp CCEEHHHHHHHHCC---CHHHHHHHHHHHHCCTTCSSCSEEES
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHhcccchhcceeeec
Confidence 57999999999999 99999999999986 3677654
No 419
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=54.48 E-value=8.8 Score=25.81 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=23.9
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..|.+|.++ +.+.| ...|.++||++.|+ .+..+|+
T Consensus 15 ~Il~aA~~l-----F~~~Gy~~ts~~~IA~~aGv---sk~tlY~ 50 (202)
T 2i10_A 15 VALQTAMEL-----FWRQGYEGTSITDLTKALGI---NPPSLYA 50 (202)
T ss_dssp HHHHHHHHH-----HHHHTTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHHHHHHH-----HHHhCcccCCHHHHHHHhCC---ChHHHHH
Confidence 345555542 33334 57999999999999 7777664
No 420
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=54.34 E-value=9 Score=25.43 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 35 ~~~t~~~Ia~~agv---s~~t~Y~ 55 (213)
T 2qtq_A 35 VDISLSELSLRSGL---NSALVKY 55 (213)
T ss_dssp SCCCHHHHHHHHCC---CHHHHHH
T ss_pred ccccHHHHHHHhCC---ChhhHhH
Confidence 57999999999999 7766663
No 421
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=54.28 E-value=28 Score=21.21 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=35.0
Q ss_pred HHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCce
Q 040869 33 KCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCF 83 (131)
Q Consensus 33 ~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~ 83 (131)
+..++--++....+.+++++..+.-..+++ |+....||-.+++..|.+
T Consensus 41 YL~~K~~Li~E~~k~g~~lkk~da~~~~ki---D~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 41 YLVLKEVMFRELLKTGGNLSKSACRELLNI---DPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHcc---cHHHHHHHHHHHHHcCCC
Confidence 333433334334433667888888888999 999999999999998864
No 422
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=54.23 E-value=11 Score=23.89 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
...|..|||+.+|+ ++..+++
T Consensus 40 ~g~s~~EIA~~lgi---S~~tV~~ 60 (113)
T 1xsv_A 40 EDYSLSEIADTFNV---SRQAVYD 60 (113)
T ss_dssp SCCCHHHHHHHTTC---CHHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHHH
Confidence 46999999999999 7776553
No 423
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=54.10 E-value=54 Score=23.02 Aligned_cols=35 Identities=14% Similarity=-0.037 Sum_probs=27.2
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
-+..|+..+. .++|..|||+.+|+ .+.++...++.
T Consensus 179 re~~vl~~~~---~G~s~~eIa~~l~i---s~~tV~~~~~~ 213 (237)
T 3szt_A 179 RETEMLKWTA---VGKTYGEIGLILSI---DQRTVKFHIVN 213 (237)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCC---CHHHHHHHHHH
Confidence 4566777776 46999999999999 88887765544
No 424
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=54.06 E-value=4.7 Score=26.17 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 33 ~~~ti~~Ia~~agv---s~~t~Y~ 53 (156)
T 3ljl_A 33 DKMSYTTLSQQTGV---SRTGISH 53 (156)
T ss_dssp HHCCHHHHHHHHTC---CHHHHHH
T ss_pred hhcCHHHHHHHHCC---CHHHHHH
Confidence 45999999999999 7777764
No 425
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=54.02 E-value=8.6 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
++.+.| ..+|+.+||++.|+ +...+|+
T Consensus 25 l~~~~G~~~~tv~~IA~~agv---s~~t~Y~ 52 (231)
T 2qib_A 25 LFSRRSPDEVSIDEIASAAGI---SRPLVYH 52 (231)
T ss_dssp HHHHSCGGGCCHHHHHHHHTS---CHHHHHH
T ss_pred HHHHcCchhcCHHHHHHHhCC---CHHHHHH
Confidence 344434 47999999999999 6666653
No 426
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=53.89 E-value=9.3 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ .+..+|
T Consensus 26 ~~ts~~~IA~~aGv---s~gtlY 45 (197)
T 2gen_A 26 DATTIEMIRDRSGA---SIGSLY 45 (197)
T ss_dssp TTCCHHHHHHHHCC---CHHHHH
T ss_pred ccCCHHHHHHHHCC---ChHHHH
Confidence 57999999999999 666655
No 427
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=53.79 E-value=9.1 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=17.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ...|.++||++.|+ ....+|
T Consensus 23 f~~~G~~~~s~~~Ia~~Agv---skgt~Y 48 (197)
T 2f07_A 23 ISEKGLDKASISDIVKKAGT---AQGTFY 48 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHhCcccCCHHHHHHHhCC---CchHHH
Confidence 33334 57999999999998 444444
No 428
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=53.74 E-value=13 Score=24.77 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=19.0
Q ss_pred HHhCCCCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHGRAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.|-.+|..+||++.|+ ....+|+
T Consensus 26 f~~~G~~~t~~~IA~~agv---s~~tlY~ 51 (196)
T 2qwt_A 26 FAAEGLGVPMDEIARRAGV---GAGTVYR 51 (196)
T ss_dssp HHHTCTTSCHHHHHHHTTS---CHHHHHH
T ss_pred HHhcCCCCCHHHHHHHhCC---CHHHHHH
Confidence 4433435899999999999 6666663
No 429
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=53.59 E-value=12 Score=27.89 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 25 SHLSSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 25 ~~~~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
+||....+....+ .+..+|+++|++.+|+ .+ .-++..|..+|++....
T Consensus 192 ~YW~~~i~~~L~~---------~~~~isi~~is~~Tgi---~~---~Dii~tL~~l~~l~~~k 239 (276)
T 3to7_A 192 AYWSDTLITLLVE---------HQKEITIDEISSMTSM---TT---TDILHTAKTLNILRYYK 239 (276)
T ss_dssp HHHHHHHHHHHHH---------TCSEEEHHHHHHHHCB---CH---HHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHh---------cCCceeHHHHHHHhCC---CH---HHHHHHHHHCCCEEEeC
Confidence 5777766665443 2467999999999999 43 45788899999998764
No 430
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=53.43 E-value=9.7 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 29 ~~~ti~~Ia~~agv---s~~t~Y~ 49 (216)
T 3s5r_A 29 AATTMAEIAASVGV---NPAMIHY 49 (216)
T ss_dssp TTCCHHHHHHTTTC---CHHHHHH
T ss_pred ccCCHHHHHHHHCC---CHHHHHH
Confidence 57999999999999 6666653
No 431
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=53.38 E-value=8.9 Score=32.40 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=37.2
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhh--cCCceeecccC---CCCcceecch
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLV--HSSCFNKTKVN---GQEEAYGLTA 99 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~--~~gl~~~~~~~---~~~~~y~~t~ 99 (131)
...+|++||++.+|+ ++..|.|.|..|+ ..+++.+.+.. ..++.|..+.
T Consensus 605 ~~~lt~~ei~~~t~i---~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~ 658 (759)
T 2hye_C 605 GDGFSFEEIKMATGI---EDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNG 658 (759)
T ss_dssp CCCEEHHHHHHHTCC---CHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECC
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeec
Confidence 467999999999999 9999999999998 47888864211 1245666554
No 432
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=53.37 E-value=15 Score=26.77 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+.+|+++|+..+|. ++......|..+...|++=.+.
T Consensus 166 ~g~vt~~~L~~~l~W---~~~Ra~~~L~~l~~~GllwvD~ 202 (234)
T 3cuq_A 166 NGYVTVSEIKASLKW---ETERARQVLEHLLKEGLAWLDL 202 (234)
T ss_dssp TSEECHHHHHHHHTC---CHHHHHHHHHHHHHHTSCEEES
T ss_pred cCcCcHHHHHHHhCC---CHHHHHHHHHHHHhCCCEEEeC
Confidence 478999999999999 9999999999999999988774
No 433
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=53.30 E-value=10 Score=24.06 Aligned_cols=23 Identities=9% Similarity=0.349 Sum_probs=18.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
...|..|||+.+|+ ++..+++.+
T Consensus 37 ~g~s~~EIA~~lgi---S~~tV~~~l 59 (113)
T 1s7o_A 37 DDYSLAEIADEFGV---SRQAVYDNI 59 (113)
T ss_dssp TCCCHHHHHHHHTC---CHHHHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHH
Confidence 46999999999999 777765433
No 434
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=53.26 E-value=9.6 Score=25.37 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=22.8
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..|.+|.+ .+.+.| ...|.++||++.|+ .+..+|
T Consensus 14 ~Il~aA~~-----lf~~~G~~~~s~~~IA~~aGv---s~gtlY 48 (194)
T 2nx4_A 14 SITAAAWR-----LIAARGIEAANMRDIATEAGY---TNGALS 48 (194)
T ss_dssp HHHHHHHH-----HHHHHCTTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHHHHHH-----HHHhcCcccCCHHHHHHHhCC---CcchHH
Confidence 44555544 233335 57999999999999 666555
No 435
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=53.26 E-value=8 Score=22.20 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 22 ~glsq~~lA~~~gi---s~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGL---SQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHHHHT
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHc
Confidence 56999999999999 8777777664
No 436
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=53.18 E-value=11 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..+||+.+|+ +...|+|-.+
T Consensus 47 ~~lTv~eIA~~LGI---S~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGI---NRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTC---CHHHHHHHHH
T ss_pred cCCCHHHHHHHhCC---CHHHHHHHHH
Confidence 47999999999999 9999999877
No 437
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=53.14 E-value=2.8 Score=28.92 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
||+.+. .+.|..+||+.+|+ +...++|.++.-.
T Consensus 151 i~~l~~---~G~s~~~Ia~~l~v---s~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 151 AGRLLA---QGIPRKQVALIYDV---ALSTLYKKHPAKR 183 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHHHhh
Confidence 555444 34899999999999 8899999886543
No 438
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=52.80 E-value=7.5 Score=25.67 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 36 ~~~ti~~Ia~~agv---s~~t~Y~ 56 (208)
T 3cwr_A 36 AAMTMEGVASEAGI---AKKTLYR 56 (208)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred HhccHHHHHHHhCC---CHHHHHH
Confidence 56999999999999 6666553
No 439
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=52.77 E-value=2.9 Score=30.35 Aligned_cols=60 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhcccccc
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIK 106 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~ 106 (131)
-.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|.. .-+|.+. +....+|+.++.|..
T Consensus 17 ~~L~~f~~v~~---~gs~t~AA~~L~i---sq~avS~~I~~LE~~lg~~Lf~R~-----~r~~~lT~~G~~l~~ 79 (315)
T 1uth_A 17 NLLVVFNQLLL---DRSVSTAGEKLGL---TQPAVSNSLKRLRTALNDDLFLRT-----SKGMEPTPYALHLAE 79 (315)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---cCCHHHHHHHhCC---CHHHHHHHHHHHHHHhCCcceeec-----CCCccCCHHHHHHHH
Confidence 34677877774 4578888999999 88888888888854 3688876 467889999887654
No 440
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=52.76 E-value=15 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=26.5
Q ss_pred hHHHHHhC-CCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 40 IADIIHSH-GRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 40 ifd~l~~~-~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
+.+.|.+. ..++|++++|+.+|+ ++..+.|+.+.
T Consensus 174 ~~~~i~~~~~~~~sl~~lA~~~~~---S~~~l~r~fk~ 208 (276)
T 3gbg_A 174 ISCLVKSDITRNWRWADICGELRT---NRMILKKELES 208 (276)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHTC---CHHHHHHHHHT
T ss_pred HHHHHHHhhcCCCCHHHHHHHHCc---CHHHHHHHHHH
Confidence 34445432 368999999999999 99999999874
No 441
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=52.61 E-value=14 Score=25.37 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=20.1
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
++.+.| ..+|+.+||++.|+ +...+|+
T Consensus 19 l~~~~G~~~~tv~~Ia~~agv---s~~t~y~ 46 (213)
T 3ni7_A 19 LAAHTSWEAVRLYDIAARLAV---SLDEIRL 46 (213)
T ss_dssp HHHHSCSTTCCHHHHHHHTTS---CHHHHHH
T ss_pred HHHHcCccccCHHHHHHHhCC---CHHHHHH
Confidence 344445 67999999999999 6666553
No 442
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=52.60 E-value=25 Score=21.42 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=30.4
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCC
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVHSS 81 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~g 81 (131)
|...|.. .++.|+.||++++++ +..-+..-+-=|+..+
T Consensus 13 VW~~L~~-~~~~s~~el~k~t~l---~d~el~lAIGWLaREd 50 (82)
T 2l02_A 13 VWHALNE-ADGISIPELARKVNL---SVESTALAVGWLAREN 50 (82)
T ss_dssp HHHHHHH-CCSBCHHHHHHHHTC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHhc-cCCCCHHHHHHHhCC---CHHHHHHHHHHHhccC
Confidence 6788876 368999999999999 7777777776666655
No 443
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=52.52 E-value=8.2 Score=23.06 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=19.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
...+|..+||+++|+ +...+.++.+
T Consensus 20 ~~glsq~~lA~~~gi---s~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGV---SPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTC---CHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCc---CHHHHHHHHh
Confidence 356999999999999 6666666554
No 444
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=52.31 E-value=8.7 Score=25.75 Aligned_cols=34 Identities=9% Similarity=0.292 Sum_probs=22.2
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..|.+|.+ .+.+.| ...|.++||++.|+ .+..+|
T Consensus 13 ~Il~aA~~-----lf~~~G~~~~s~~~IA~~aGv---sk~tlY 47 (203)
T 3cdl_A 13 SIVQAAIA-----EFGDRGFEITSMDRIAARAEV---SKRTVY 47 (203)
T ss_dssp HHHHHHHH-----HHHHHCTTTCCHHHHHHHTTS---CHHHHH
T ss_pred HHHHHHHH-----HHHHcCchhcCHHHHHHHhCC---CHHHHH
Confidence 34555544 233334 57999999999999 555554
No 445
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=52.30 E-value=9.7 Score=25.93 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 28 SSMSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
.-+.|.+|.++ +.+.| ...|..+||++.|+ ....+|
T Consensus 37 r~~Il~aA~~l-----f~~~G~~~~t~~~IA~~AGv---s~~tlY 73 (221)
T 3g7r_A 37 RARLLGTATRI-----FYAEGIHSVGIDRITAEAQV---TRATLY 73 (221)
T ss_dssp HHHHHHHHHHH-----HHHHCSTTSCHHHHHHHHTC---CHHHHH
T ss_pred HHHHHHHHHHH-----HHHhCcccCCHHHHHHHhCC---CHHHHH
Confidence 44455555443 33334 57999999999999 666655
No 446
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=52.20 E-value=12 Score=25.08 Aligned_cols=26 Identities=12% Similarity=0.423 Sum_probs=19.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|+.+||++.|+ +...+|+
T Consensus 33 ~~~~g~~~~tv~~Ia~~Agv---s~~t~Y~ 59 (185)
T 3o60_A 33 VEDRTFESISIKDLCEQARV---SRATFYR 59 (185)
T ss_dssp HTTCCTTTCCHHHHHHHHTC---CHHHHHH
T ss_pred HhcCCcccCCHHHHHHHhCC---CHHHHHH
Confidence 45444 57999999999999 6666553
No 447
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=52.19 E-value=9.9 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|+.+||++.|+ ....+|
T Consensus 56 ~~~~G~~~~tv~~IA~~AGv---s~~t~Y 81 (229)
T 3bni_A 56 LDEVGYDALSTRAVALRADV---PIGSVY 81 (229)
T ss_dssp HHHHCTTTCCHHHHHHHHTC---CHHHHH
T ss_pred HHhcChhhccHHHHHHHHCC---CchhHH
Confidence 33334 57999999999999 666665
No 448
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=52.16 E-value=6.5 Score=25.79 Aligned_cols=20 Identities=10% Similarity=0.411 Sum_probs=16.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 29 ~~~t~~~IA~~agv---s~~tlY 48 (197)
T 3rd3_A 29 SGVGLNEILQSAGV---PKGSFY 48 (197)
T ss_dssp TTCCHHHHHHHHTC---CHHHHT
T ss_pred ccCCHHHHHHHhCC---ChhhHH
Confidence 57999999999999 555544
No 449
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=52.05 E-value=10 Score=25.50 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
...|.++||++.|+ ....+|+
T Consensus 31 ~~ts~~~IA~~aGv---sk~tlY~ 51 (211)
T 3bhq_A 31 DGTSMEEIATKAGA---SKQTVYK 51 (211)
T ss_dssp TTCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHHH
Confidence 57999999999999 7666663
No 450
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=51.98 E-value=10 Score=25.46 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=17.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
...|..+||++.|+ ....+|+
T Consensus 29 ~~~s~~~IA~~aGv---s~~t~Y~ 49 (210)
T 3vib_A 29 ARTSLNEIAQAAGV---TRDALYW 49 (210)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHH
T ss_pred ccCCHHHHHHHHCc---CHHHHHH
Confidence 57999999999999 6666664
No 451
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=51.94 E-value=6.2 Score=25.83 Aligned_cols=20 Identities=5% Similarity=0.361 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 29 ~~~ti~~Ia~~agv---s~~t~Y 48 (196)
T 3col_A 29 AGVSTTKVAKRVGI---AQSNVY 48 (196)
T ss_dssp GGCCHHHHHHHHTS---CHHHHH
T ss_pred ccCCHHHHHHHhCC---cHHHHH
Confidence 46999999999999 555544
No 452
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=51.82 E-value=8 Score=25.95 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..|.+|.+ .+.+.| ...|.++||++.|+ +...+|
T Consensus 18 ~Il~aA~~-----lf~~~G~~~~s~~~IA~~agv---sk~tlY 52 (199)
T 3crj_A 18 EIMQATYR-----ALREHGYADLTIQRIADEYGK---STAAVH 52 (199)
T ss_dssp HHHHHHHH-----HHHHHTTTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHHHHHH-----HHHHcCcccCCHHHHHHHhCC---ChhHHh
Confidence 34555544 233334 67999999999999 555544
No 453
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=51.77 E-value=7.7 Score=26.19 Aligned_cols=20 Identities=5% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 27 ~~~s~~~IA~~AGv---s~gt~Y 46 (206)
T 1vi0_A 27 HQSQVSKIAKQAGV---ADGTIY 46 (206)
T ss_dssp GGCCHHHHHHHHTS---CHHHHH
T ss_pred ccCCHHHHHHHhCC---ChhHHH
Confidence 56999999999999 666655
No 454
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=51.70 E-value=7.9 Score=25.99 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=17.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 22 ~~~s~~~IA~~Agv---s~~t~Y~ 42 (212)
T 3rh2_A 22 RTITTNHIAAHLDI---SPGNLYY 42 (212)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHHH
Confidence 56999999999999 6666663
No 455
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=51.50 E-value=2.5 Score=31.49 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-----CCCcceecchhccccccC
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-----GQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-----~~~~~y~~t~~s~~L~~~ 107 (131)
..|..|||++.|+ +..++.|.|+-... +.+.... -..-.|..++..+.|...
T Consensus 3 ~~ti~diA~~aGV---S~~TVSrvLn~~~~---vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~ 59 (349)
T 1jye_A 3 PVTLYDVAEYAGV---SYQTVSRVVNQASH---VSAKTREKVEAAMAELNYIPNRVAQQLAGK 59 (349)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHcCCCC---CCHHHHHHHHHHHHHHCCCcCHHHHHhhcC
Confidence 3689999999999 88999999886531 2221100 013458887777666544
No 456
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=51.46 E-value=12 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHhCCCCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHGRAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+. ...|..+||++.|+ ....+|
T Consensus 27 f~~~-~~~t~~~Ia~~agv---s~~t~Y 50 (190)
T 2v57_A 27 LADH-PTAALGDIAAAAGV---GRSTVH 50 (190)
T ss_dssp HTTC-TTCCHHHHHHHHTC---CHHHHH
T ss_pred HHHc-CCCCHHHHHHHhCC---CHHHHH
Confidence 4443 67999999999999 666655
No 457
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=51.43 E-value=18 Score=26.24 Aligned_cols=37 Identities=11% Similarity=-0.062 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecc
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTK 87 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~ 87 (131)
.+.+|+++|+..+|. ++......|..+...|++=.+.
T Consensus 179 ~g~vt~~~L~~~lgW---~~~Ra~~~L~~l~~~G~lwvD~ 215 (233)
T 1u5t_A 179 LGYSSISLLKANLGW---EAVRSKSALDEMVANGLLWIDY 215 (233)
T ss_dssp TSCCBHHHHHHHHCC---CSHHHHHHHHHHHHTTSSEEEC
T ss_pred cCcCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 478999999999999 9999999999999999988764
No 458
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=51.37 E-value=11 Score=26.82 Aligned_cols=41 Identities=7% Similarity=0.187 Sum_probs=30.8
Q ss_pred ChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceee
Q 040869 39 GIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNK 85 (131)
Q Consensus 39 ~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~ 85 (131)
.++..|.+.| ..+|..|||+++|+ ++..+++=+-++ |.|-.
T Consensus 16 r~l~~l~~~g~~~iss~~l~~~~~~---~~~~iRkdls~~---g~~G~ 57 (211)
T 2dt5_A 16 RILEELEAQGVHRTSSEQLGGLAQV---TAFQVRKDLSYF---GSYGT 57 (211)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTS---CHHHHHHHHHHT---TCCCC
T ss_pred HHHHHHHHcCCcEECHHHHHHHhCC---CHHHeechHHHH---HHhcC
Confidence 4455566544 45899999999999 999988887777 55543
No 459
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=51.29 E-value=9.1 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ ++..+|
T Consensus 35 ~~~s~~~IA~~agv---s~~t~Y 54 (216)
T 2oi8_A 35 SALSLNAIAKRMGM---SGPALY 54 (216)
T ss_dssp TSCCHHHHHHHTTC---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHH
Confidence 57999999999999 666555
No 460
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=51.26 E-value=11 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=27.4
Q ss_pred hHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHh
Q 040869 40 IADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLL 77 (131)
Q Consensus 40 ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L 77 (131)
++..|.+.| ..+|..|||+++|+ ++..+++=+-++
T Consensus 22 ~l~~l~~~g~~~iss~~l~~~~~~---~~~~iRkdls~f 57 (215)
T 2vt3_A 22 FLKNLHASGKQRVSSAELSDAVKV---DSATIRRDFSYF 57 (215)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHCC---CHHHHHHHHHHT
T ss_pred HHHHHHHcCCcEECHHHHHHHhCC---CHHHeechHHHH
Confidence 344555444 45899999999999 999998888777
No 461
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=51.18 E-value=8.2 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=18.4
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ..+|..+||++.|+ ....+|
T Consensus 36 f~~~G~~~~t~~~IA~~agv---s~~t~Y 61 (214)
T 2zb9_A 36 LLTEGTAQLTFERVARVSGV---SKTTLY 61 (214)
T ss_dssp HHHHCGGGCCHHHHHHHHCC---CHHHHH
T ss_pred HHHhCcccCCHHHHHHHHCC---CHHHHH
Confidence 44334 46999999999999 665555
No 462
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=51.03 E-value=8.2 Score=25.98 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ ++..+|+
T Consensus 34 ~~~s~~~IA~~agv---s~~t~Y~ 54 (221)
T 3c2b_A 34 KALTTSGLARAANC---SKESLYK 54 (221)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHHH
Confidence 56999999999999 7777664
No 463
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=50.74 E-value=8.2 Score=25.92 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 31 ~~~s~~~IA~~agv---s~~t~Y 50 (198)
T 3cjd_A 31 ASLRARELARQADC---AVGAIY 50 (198)
T ss_dssp GGCCHHHHHHHHTS---CHHHHH
T ss_pred hhcCHHHHHHHhCC---CccHHH
Confidence 56999999999999 666665
No 464
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=50.68 E-value=24 Score=19.57 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=22.8
Q ss_pred HHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 040869 41 ADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRL 76 (131)
Q Consensus 41 fd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~ 76 (131)
-+.|... -+..+.|+.+|+ +...|+|-|+-
T Consensus 27 ~~aL~~~---gn~~~aA~~LGI---sr~tL~rklkk 56 (61)
T 1g2h_A 27 KLFYAEY---PSTRKLAQRLGV---SHTAIANKLKQ 56 (61)
T ss_dssp HHHHHHS---CSHHHHHHHTTS---CTHHHHHHHHT
T ss_pred HHHHHHh---CCHHHHHHHhCC---CHHHHHHHHHH
Confidence 3445543 367899999999 99999998874
No 465
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=50.63 E-value=5.3 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=15.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 27 ~~~t~~~Ia~~agv---s~~t~Y 46 (183)
T 1zk8_A 27 QEVTLASLAQTLGV---RSPSLY 46 (183)
T ss_dssp GGCCHHHHHHHHTS---CHHHHT
T ss_pred cccCHHHHHHHcCC---CchHHH
Confidence 46999999999999 555544
No 466
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=50.53 E-value=24 Score=21.19 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=24.5
Q ss_pred hHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHh
Q 040869 40 IADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLL 77 (131)
Q Consensus 40 ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L 77 (131)
|-..|...++ +..+.|+.+|+ +...|+|-|+-+
T Consensus 56 i~~aL~~~~g--n~~~aA~~LGI---sr~tL~rklkk~ 88 (91)
T 1ntc_A 56 LTTALRHTQG--HKQEAARLLGW---GAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHTTT--CTTHHHHHTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CHHHHHHHHCc---CHHHHHHHHHHh
Confidence 4556665444 45588999999 999999988754
No 467
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=50.48 E-value=8.3 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 45 ~~~t~~~Ia~~agv---s~~t~Y~ 65 (217)
T 3mvp_A 45 FNVTTNEIAKKADV---SVGTLYA 65 (217)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHH
T ss_pred cccCHHHHHHHhCC---ChhHHHH
Confidence 47999999999999 7777664
No 468
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=50.37 E-value=2.7 Score=30.88 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHhhcCCceeecccC-----CCCcceecchhccccccC
Q 040869 51 ITLSELVSALDIQPTKTTGLFRLMRLLVHSSCFNKTKVN-----GQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 51 ~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~gl~~~~~~~-----~~~~~y~~t~~s~~L~~~ 107 (131)
.|..|||++.|+ +..++.|.|+-. +-+.+.... -..-.|..++..+.|...
T Consensus 3 ~ti~diA~~agV---S~~TVSrvln~~---~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~ 58 (330)
T 3ctp_A 3 ANIREIAKRAGI---SIATVSRHLNNT---GYVSEDAREKIQKVVDELNYTPNALARAMFTK 58 (330)
T ss_dssp --------------------------------------------------------------
T ss_pred CCHHHHHHHHCC---CHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCcCHHHHHhhcC
Confidence 588999999999 889999988853 223322110 002348887777666543
No 469
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=50.35 E-value=6.5 Score=26.06 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=13.0
Q ss_pred CCCCHHHHHhhcCC
Q 040869 49 RAITLSELVSALDI 62 (131)
Q Consensus 49 ~~~s~~eLA~~~~~ 62 (131)
..+|..+||++.|+
T Consensus 35 ~~~t~~~Ia~~agv 48 (211)
T 3him_A 35 GATTTREIAASLDM 48 (211)
T ss_dssp TTCCHHHHHHHTTC
T ss_pred CcCCHHHHHHHhCC
Confidence 57999999999998
No 470
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=50.16 E-value=8.4 Score=26.75 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
..|..+||+++|. ++..+.+.||.+.
T Consensus 52 G~t~eeiA~~lG~---s~s~V~~~LrLl~ 77 (178)
T 1r71_A 52 GKKKGDIAKEIGK---SPAFITQHVTLLD 77 (178)
T ss_dssp TCCHHHHHHHHTC---CHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHc
Confidence 4799999999999 9999999999874
No 471
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=50.06 E-value=14 Score=26.50 Aligned_cols=27 Identities=7% Similarity=0.281 Sum_probs=20.3
Q ss_pred HHHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 43 IIHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 43 ~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.+.+.| ..+|..+||++.|+ +...+|+
T Consensus 53 lf~e~G~~~~S~~~IA~~AGV---s~~tlY~ 80 (273)
T 3c07_A 53 LFQERGYDRTTMRAIAQEAGV---SVGNAYY 80 (273)
T ss_dssp HHHHTCSTTCCHHHHHHHHTS---CHHHHHH
T ss_pred HHHhCCccccCHHHHHHHHCC---CHHHHHH
Confidence 344445 57999999999999 6666663
No 472
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=49.99 E-value=9 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..|.+|.+ .+.+.| ...|.++||++.|+ ....+|
T Consensus 16 ~Il~aA~~-----lf~~~Gy~~ts~~~IA~~agv---s~gtlY 50 (205)
T 1rkt_A 16 EILEAAKT-----VFKRKGFELTTMKDVVEESGF---SRGGVY 50 (205)
T ss_dssp HHHHHHHH-----HHHHHCSTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHHHHHH-----HHHHcCcccCCHHHHHHHHCC---Ccchhh
Confidence 34555544 233334 57999999999999 555554
No 473
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=49.79 E-value=3.4 Score=27.68 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHhh
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMRLLV 78 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~ 78 (131)
-++|-++||..+|+ .+..+.|+++-+.
T Consensus 167 ~~~t~~~iA~~lG~---sretlsR~l~~l~ 193 (194)
T 3dn7_A 167 QRVPQYLLASYLGF---TPEYLSEIRKKYI 193 (194)
T ss_dssp ------------------------------
T ss_pred HHCCHHHHHHHhCC---CHHHHHHHHHhhc
Confidence 57899999999999 9999999998764
No 474
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=49.76 E-value=8 Score=25.85 Aligned_cols=25 Identities=4% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.+.| ...|..+||++.|+ ++..+|
T Consensus 26 f~~~G~~~~t~~~IA~~agv---s~~tlY 51 (217)
T 3nrg_A 26 FAQNDYDSVSINRITERAGI---AKGSFY 51 (217)
T ss_dssp HHHSCGGGCCHHHHHHHHTC---CTTGGG
T ss_pred HHhcCcccCCHHHHHHHhCC---cHHHHH
Confidence 44434 46999999999999 555444
No 475
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=49.63 E-value=9.7 Score=27.20 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=28.8
Q ss_pred ChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHhhcCC
Q 040869 39 GIADIIHSHG-RAITLSELVSALDIQPTKTTGLFRLMRLLVHSS 81 (131)
Q Consensus 39 ~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~~g 81 (131)
..+..|.+.| ..+|..|||+++|+ ++..++|=|-++-..|
T Consensus 20 r~l~~l~~~g~~~isS~ela~~~gv---~~~qiRkDls~fg~~G 60 (212)
T 3keo_A 20 RIFKRFNTDGIEKASSKQIADALGI---DSATVRRDFSYFGELG 60 (212)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTS---CHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHCCCeEECHHHHHHHHCC---CHHHHHHHHHHHhhcC
Confidence 3445555444 56899999999999 9998887766654444
No 476
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=49.55 E-value=7.1 Score=25.75 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|..+||++.|+ .+..+|
T Consensus 26 ~~~s~~~IA~~aGv---s~~tlY 45 (178)
T 4hku_A 26 EKTTLYDIASNLNV---THAALY 45 (178)
T ss_dssp GGCCHHHHHHHTTS---CGGGGG
T ss_pred ccccHHHHHHHhCc---CHhHHH
Confidence 56999999999999 555443
No 477
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=49.49 E-value=12 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=19.7
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
+.+.| ..+|..+||++.|+ ....+|+
T Consensus 57 f~e~G~~~~t~~~IA~~aGv---s~~tlY~ 83 (236)
T 3q0w_A 57 LEDRPLADISVDDLAKGAGI---SRPTFYF 83 (236)
T ss_dssp HHHSCGGGCCHHHHHHHHTC---CHHHHHH
T ss_pred HHHcCcccCCHHHHHHHhCC---cHHHHHH
Confidence 44444 47999999999999 7776663
No 478
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=49.34 E-value=8.1 Score=26.07 Aligned_cols=20 Identities=5% Similarity=0.059 Sum_probs=17.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
. .|..+||++.|+ +...+|+
T Consensus 31 ~-~s~~~IA~~agv---s~~tiY~ 50 (224)
T 1t33_A 31 H-ATTRDIAALAGQ---NIAAITY 50 (224)
T ss_dssp G-SCHHHHHHHHTS---CHHHHHH
T ss_pred c-ccHHHHHHHhCC---CHHHHHH
Confidence 7 999999999999 7776664
No 479
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=49.25 E-value=9.7 Score=22.40 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..++|+++|+ ++..+.++.+
T Consensus 29 ~glsq~~lA~~~gi---s~~~is~~e~ 52 (92)
T 1lmb_3 29 LGLSQESVADKMGM---GQSGVGALFN 52 (92)
T ss_dssp HTCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 46899999999999 7777777765
No 480
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=49.14 E-value=3.6 Score=29.97 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhhc---CCceeecccCCCCcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLVH---SSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~~---~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
.|.+|..+.+ .-|...-|+++++ ..+.+.|-++.|.. .-+|.+. .+...+|+.++.|...
T Consensus 5 ~L~~F~~vae---~gS~s~AA~~L~i---sq~avS~~I~~LE~~lG~~Lf~R~-----~r~v~lT~~G~~l~~~ 67 (313)
T 2h98_A 5 HLRYFVTVVE---EQSISKAAEKLCI---AQPPLSRQIQKLEEELGIQLFERG-----FRPAKVTEAGMFFYQH 67 (313)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHH---hCCHHHHHHHhCC---CccHHHHHHHHHHHHhCCeeEEcC-----CCCeEECHhHHHHHHH
Confidence 4677877774 4578888999999 88888888888764 3688877 4678999999876543
No 481
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=48.62 E-value=13 Score=24.45 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=16.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..|||+.+|+ ++..+.
T Consensus 108 ~g~s~~EIA~~lgi---s~~tV~ 127 (157)
T 2lfw_A 108 EGFSPEDAAYLIEV---DTSEVE 127 (157)
T ss_dssp SCCCHHHHHHTTTS---CHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHH
Confidence 57999999999999 777654
No 482
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=48.61 E-value=9.5 Score=25.60 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=16.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 28 ~~~s~~~IA~~AGv---s~gtlY 47 (203)
T 2np5_A 28 EGASVREVAKRAGV---SIGAVQ 47 (203)
T ss_dssp GGCCHHHHHHHHTC---CHHHHH
T ss_pred hhccHHHHHHHhCC---CHHHHH
Confidence 56999999999999 555555
No 483
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=48.44 E-value=12 Score=25.34 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 28 ~~ts~~~IA~~AGv---skgtlY 47 (215)
T 1ui5_A 28 ESTTLSEIVAHAGV---TKGALY 47 (215)
T ss_dssp TTCCHHHHHHHHTC---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CchhhH
Confidence 57999999999999 655555
No 484
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=48.28 E-value=9.8 Score=25.70 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|.++||++.|+ ....+|
T Consensus 30 ~~~s~~~IA~~aGv---skgtlY 49 (219)
T 2w53_A 30 ARTTLEMIGARAGY---TRGAVY 49 (219)
T ss_dssp TTCCHHHHHHHHTS---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CchHHh
Confidence 57999999999999 555544
No 485
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=48.14 E-value=12 Score=25.77 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHhChHHHHHhCC-CCCCHHHHHhhcCCCCCCcchHH
Q 040869 30 MSLKCAIELGIADIIHSHG-RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 30 ~aL~~a~~L~ifd~l~~~~-~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
+.|.+|.+ .+.+.| ...|..+||++.|+ +...+|
T Consensus 11 ~Il~AA~~-----lF~e~G~~~ts~~~IA~~AGv---s~~tlY 45 (235)
T 2fbq_A 11 RILDAAEQ-----LFAEKGFAETSLRLITSKAGV---NLAAVN 45 (235)
T ss_dssp HHHHHHHH-----HHHHHCSTTCCHHHHHHHHTS---CHHHHH
T ss_pred HHHHHHHH-----HHHHcCccccCHHHHHHHhCC---CHHHHH
Confidence 34555544 233335 57999999999999 666655
No 486
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=48.11 E-value=14 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|-.|+|+.+|+ ++..+.++-+
T Consensus 23 ~gltq~elA~~~gv---s~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGG---GVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCS---CTTHHHHHHT
T ss_pred cCCCHHHHHHHhCc---CHHHHHHHHc
Confidence 56999999999999 7777777654
No 487
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=47.96 E-value=3.8 Score=28.79 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred HhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHHHhh---cCCceeecccCCCCcceecchhccccccC
Q 040869 37 ELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMRLLV---HSSCFNKTKVNGQEEAYGLTAASTLLIKD 107 (131)
Q Consensus 37 ~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr~L~---~~gl~~~~~~~~~~~~y~~t~~s~~L~~~ 107 (131)
+|.+|..+.+ .-|...-|+++++ ..+.+-|-++.|. ..-+|.+. ++...+|+.++.|...
T Consensus 2 ~L~~f~~v~~---~~s~s~AA~~L~i---sq~avS~~i~~LE~~lg~~Lf~R~-----~~~~~lT~~G~~l~~~ 64 (300)
T 3mz1_A 2 GMRAFLRVVE---TGNFTRASASLNM---PKATVTNLIQGLEAHLRTKLLNRT-----TRRVLVTPDGALYYER 64 (300)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cHHHHHHHHh---cCCHHHHHHHhCC---CHHHHHHHHHHHHHHhCCeeEecC-----CCceeeCHhHHHHHHH
Confidence 4667777773 4678888999999 7788888777775 45588876 4678999999876643
No 488
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=47.89 E-value=13 Score=25.34 Aligned_cols=20 Identities=0% Similarity=0.076 Sum_probs=16.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
...|..+||++.|+ .+..+|
T Consensus 33 ~~~s~~~IA~~AGv---s~~tlY 52 (208)
T 3v6g_A 33 GGLSHRRVAAEANV---PVGSTT 52 (208)
T ss_dssp TCCCHHHHHHHHTS---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CchhHH
Confidence 57999999999999 666655
No 489
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=47.81 E-value=14 Score=24.59 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=18.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLM 74 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlL 74 (131)
..+|..|||+.+|+ ++..++..+
T Consensus 155 ~g~s~~EIA~~lgi---s~~tV~~~l 177 (194)
T 1or7_A 155 DGLSYEEIAAIMDC---PVGTVRSRI 177 (194)
T ss_dssp TCCCHHHHHHHTTS---CHHHHHHHH
T ss_pred cCCCHHHHHHHHCC---CHHHHHHHH
Confidence 46999999999999 777755443
No 490
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=47.56 E-value=8.1 Score=25.88 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=16.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 30 ~~~s~~~IA~~agv---s~~t~Y 49 (212)
T 2ras_A 30 AGLTLSELAARAGI---SQANLS 49 (212)
T ss_dssp SCCCHHHHHHHHTS---CHHHHT
T ss_pred ccCcHHHHHHHhCC---CHHHHH
Confidence 57999999999999 555544
No 491
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=47.14 E-value=13 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=20.6
Q ss_pred HHhCC-CCCCHHHHHhhcCCCCCCcchHHHH
Q 040869 44 IHSHG-RAITLSELVSALDIQPTKTTGLFRL 73 (131)
Q Consensus 44 l~~~~-~~~s~~eLA~~~~~~~~~~~~l~Rl 73 (131)
+.+.| ..+|+.+||++.|+ +...+|+-
T Consensus 61 f~e~G~~~~Ti~~IA~~AGv---s~~t~Y~y 88 (260)
T 2of7_A 61 IRQQGYEATTVEQIAERAEV---SPSTVLRY 88 (260)
T ss_dssp HHHHCSTTCCHHHHHHHHTS---CHHHHHHH
T ss_pred HHHhCcccccHHHHHHHhCC---ChHHHHHH
Confidence 44334 57999999999999 77777754
No 492
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=47.12 E-value=10 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||++.|+ +...+|+
T Consensus 24 ~~~t~~~IA~~Agv---s~~t~Y~ 44 (228)
T 3nnr_A 24 RNITTNHIAAHLAI---SPGNLYY 44 (228)
T ss_dssp GGCCHHHHHHHHTC---CHHHHHH
T ss_pred hhcCHHHHHHHhCC---CCccchh
Confidence 56999999999999 7666663
No 493
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=46.77 E-value=19 Score=25.29 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=24.6
Q ss_pred HHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 36 IELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 36 ~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
-+..|+..+. .+.|..|||+.+|+ .+.+++..++
T Consensus 179 ~e~~vl~~~~---~g~s~~eIa~~l~i---s~~tV~~~~~ 212 (236)
T 2q0o_A 179 REMLCLVWAS---KGKTASVTANLTGI---NARTVQHYLD 212 (236)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHCC---CHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCc---CHHHHHHHHH
Confidence 3444665554 46999999999999 8887665443
No 494
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=46.74 E-value=15 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
..+|..|||+++|+ +...+.++.+
T Consensus 25 ~glsq~~lA~~~gi---s~~~is~~e~ 48 (91)
T 1x57_A 25 KGLTQKDLATKINE---KPQVIADYES 48 (91)
T ss_dssp TTCCHHHHHHHHTS---CHHHHHHHHH
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 57999999999999 7776666654
No 495
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=46.73 E-value=13 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|..+||++.|+ +...+|
T Consensus 42 ~~~s~~~IA~~agv---s~~tlY 61 (231)
T 2zcx_A 42 REITLTDIAATVGM---HKSALL 61 (231)
T ss_dssp TTCCHHHHHHHHTS---CHHHHH
T ss_pred ccCCHHHHHHHhCC---CHHHHH
Confidence 57999999999999 666665
No 496
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=46.64 E-value=14 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhChHHHHHhCCCCCCHHHHHhhcCCCCCCcchHHH
Q 040869 28 SSMSLKCAIELGIADIIHSHGRAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 28 ~~~aL~~a~~L~ifd~l~~~~~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
.-..|.+|.++ | ..+ |..+|..+||++.|+ +...+|+
T Consensus 22 r~~Il~aA~~l--f--~~~-G~~~s~~~IA~~aGv---s~~tlY~ 58 (215)
T 2hku_A 22 RDALFTAATEL--F--LEH-GEGVPITQICAAAGA---HPNQVTY 58 (215)
T ss_dssp HHHHHHHHHHH--H--HHH-CTTSCHHHHHHHHTC---CHHHHHH
T ss_pred HHHHHHHHHHH--H--HHh-CCCcCHHHHHHHhCC---CHHHHHH
Confidence 34455555443 2 123 367999999999999 7777664
No 497
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=46.60 E-value=10 Score=25.79 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=16.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLF 71 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~ 71 (131)
..+|+.+||++.|+ ....+|
T Consensus 47 ~~~t~~~IA~~aGv---s~~tlY 66 (217)
T 3hta_A 47 AGLSHRTVAAEADV---PLGSTT 66 (217)
T ss_dssp GGCCHHHHHHHHTC---CHHHHH
T ss_pred ccCCHHHHHHHcCC---Ccchhh
Confidence 46999999999999 666655
No 498
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=46.56 E-value=10 Score=26.08 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=18.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHH
Q 040869 49 RAITLSELVSALDIQPTKTTGLFR 72 (131)
Q Consensus 49 ~~~s~~eLA~~~~~~~~~~~~l~R 72 (131)
..+|..+||+++|+ .+..+|+
T Consensus 21 ~~~s~~~IA~~aGv---s~~tlY~ 41 (209)
T 3bqy_A 21 DTLTMRRLAQAMDV---QAGALYR 41 (209)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHH
T ss_pred ccCCHHHHHHHhCC---CcchHHh
Confidence 46999999999999 7777775
No 499
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=46.17 E-value=13 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 48 GRAITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 48 ~~~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
...+|..+||+++|+ ++..+.++.+
T Consensus 25 ~~gltq~eLA~~lGi---s~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAI---PTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTS---CHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCc---CHHHHHHHHc
Confidence 367999999999999 8888877775
No 500
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=46.15 E-value=12 Score=25.11 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=18.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHH
Q 040869 50 AITLSELVSALDIQPTKTTGLFRLMR 75 (131)
Q Consensus 50 ~~s~~eLA~~~~~~~~~~~~l~RlLr 75 (131)
.-|++|||+++|+ ++..|..-+.
T Consensus 95 adTleeLA~~~gi---d~~~L~~TV~ 117 (160)
T 2lfc_A 95 KGSLESAAEQAGI---VVDELVQTVK 117 (160)
T ss_dssp CSSHHHHHHHHTC---CHHHHHHHHH
T ss_pred cCCHHHHHHHhCC---CHHHHHHHHH
Confidence 4589999999999 8887665553
Done!