BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040870
(215 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 26/198 (13%)
Query: 6 FKDWKDLWLPELAGRISMVNSPREVIG-----------TQAAAGRIAVQQNLALLGNQVR 54
F W DLW PE A ++ +++ REV TQ A + L L V
Sbjct: 160 FTSWADLWKPEFANKVQLLDDAREVFNIALLKIGQDPNTQDPAIIKQAYEELLKLRPNVL 219
Query: 55 LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRL 114
F+ + F G+V + W+ V A K + + +V PK G LW D AIPA ++
Sbjct: 220 SFNSDNPANSFISGEVEVGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAK- 278
Query: 115 ETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKPSLDTKLI---AGV 171
G H+ I + L A + P ++ K +L ++ A
Sbjct: 279 -------NSEG----AHKLINYMLGKKTAEKLTLAIGYPTSNIEAKKALPKEITEDPAIY 327
Query: 172 PPAEILARCEFLEPLSEA 189
P A+IL + + + +A
Sbjct: 328 PSADILKNSHWQDDVGDA 345
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 9 WKDLWLPELAGRISMVNSPREVIG------------TQAAAGRIAVQQNLALLGNQVRLF 56
W DLW PE G++ M + REV T + A ++ LL N V F
Sbjct: 154 WADLWKPEFKGKVLMTSDAREVFHVALLLDGKSPNTTNEEDIKTAYERLEKLLPN-VATF 212
Query: 57 DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLET 116
+ + G+V I + W+ A K ++ V PK GA W D +AIP ++
Sbjct: 213 NSDSPEVPYVQGEVAIGMIWNGSAYLAQKENQSLQFVYPKEGAIFWMDNYAIPTTAK--- 269
Query: 117 KQIGGRVRGPFPLIHQWIEFCLQTARA------LPFNTRVKLPEELLKGKPSLDTKLIAG 170
V G H++I+F L+ A + F+ + LL + + D KL
Sbjct: 270 -----NVEGA----HKFIDFLLRPENAKIVIERMGFSMPNNGAKTLLSAEVANDPKLF-- 318
Query: 171 VPPAEILAR 179
PPAE + +
Sbjct: 319 -PPAEEVEK 326
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 52 QVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADL 105
+R F + Y+ GD+ +A+GW+ DV A R NV+ +PK GA + D+
Sbjct: 220 NIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDV 279
Query: 106 WAIPAASR 113
+A+PA ++
Sbjct: 280 FAMPADAK 287
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 9 WKDLWLPELAGRISMVNSPREVI----------GTQAAAGRIAVQQN-LALLGNQVRLFD 57
W DLW PE G + + + REV G I N L L V F+
Sbjct: 151 WADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN 210
Query: 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 113
+ + G+V + + W+ A + + + VV PK G W D AIPA ++
Sbjct: 211 SDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 9 WKDLWLPELAGRISMVNSPREVI----------GTQAAAGRIAVQQN-LALLGNQVRLFD 57
W DLW PE G + + + REV G I N L L V F+
Sbjct: 151 WADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN 210
Query: 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 113
+ + G+V + + W+ A + + + VV PK G W D AIPA ++
Sbjct: 211 SDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 9 WKDLWLPELAGRISMVNSPREVI----------GTQAAAGRI-AVQQNLALLGNQVRLFD 57
W DLW PE + + + REV G I A + L L V F+
Sbjct: 151 WADLWKPEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFN 210
Query: 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 113
+ + G+V + + W+ A + + + VV PK G W D AIPA ++
Sbjct: 211 SDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 9 WKDLWLPELAGRISMVNSPREVI----------GTQAAAGRI-AVQQNLALLGNQVRLFD 57
W DLW PE + + + REV G I A + L L V F+
Sbjct: 151 WADLWKPEYKNSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFN 210
Query: 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 113
+ + G+V + + W+ A + + + VV PK G W D AIPA ++
Sbjct: 211 SDNPANPYMEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 75 GWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWI 134
G +SD+ + +SN + L+A+L P L KQI + +I+ I
Sbjct: 72 GNNSDIDACI--VSNSTITRDDFYDGLYAELLNNPDVKEL--KQIPSKRSPHLSMIYLNI 127
Query: 135 EFCLQTAR----ALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEIL 177
EF L +R +LP N + L E +LK LDT+ I GV +I+
Sbjct: 128 EFDLNFSRTAYTSLPDNLDI-LNENILKNMDELDTRAINGVRNTDII 173
>sp|O27190|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1
Length = 684
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 47 ALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA 103
L +V++ H L IGD+ + V + D++PA+KR S ++ + G + A
Sbjct: 371 GLASGRVKIIREIHELDKIQIGDILVTVMTTPDMVPAMKRAS--GIITDEGGVTCHA 425
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1
PE=2 SV=1
Length = 1151
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 21 ISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGW 76
IS V S E I A ++ ++ N+ L NQ+ ++TH+++ I D W
Sbjct: 1018 ISQVTSSEEAIKKLQLAAQLGMKGNIQKLNNQITPLNQTHFIEELEINDYSQQARW 1073
>sp|Q5FRY8|ILVC_GLUOX Ketol-acid reductoisomerase OS=Gluconobacter oxydans (strain 621H)
GN=ilvC PE=3 SV=1
Length = 339
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 43 QQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSG-ASL 101
+ +A++G + + LK G+ D+ I + +S AVK+ V + G A+
Sbjct: 16 SKKVAIIGYGSQGHAHANNLKDSGVSDIVIGLRPTS---SAVKKAEEAGFKVMEPGEAAA 72
Query: 102 WADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPEELLKGKP 161
WAD+ + G L + +E L+ AL F + + +++ +P
Sbjct: 73 WADVVMVLTPDE-----------GQGALYKESLEKNLKPGAALAFAHGLSIHFRIIEARP 121
Query: 162 SLDTKLIAGVPPAEILARCEFL 183
LD LIA P + R E+L
Sbjct: 122 DLDVFLIAPKGPGHTV-RSEYL 142
>sp|P44838|CLPX_HAEIN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=clpX PE=3 SV=1
Length = 411
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 113 RLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLPE------ELLKGKPSLDTK 166
+L+T +I G F + + I+ QT+ ++ FN +V+ E EL + D
Sbjct: 235 KLDTSKILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLM 294
Query: 167 LIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKPAPVLMKRVQ 213
+P E + R + PLSE D + L+ L KP L+K+ Q
Sbjct: 295 KFGLIP--EFIGRLPMIAPLSEL---DEDALIQILTKPKNALIKQYQ 336
>sp|Q1MFK3|COBS_RHIL3 Cobalamin synthase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=cobS PE=3 SV=1
Length = 260
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 135 EFCLQTARALPFNTRVKLPEELLKGKPSLDTKLIAGVPPAEIL 177
++ + TARA+ F +R+ +P+ L KG +L+ P A I+
Sbjct: 5 DYAVDTARAVAFLSRIPMPQSLFKGYDGRLGRLVRAFPFAGIV 47
>sp|P87024|SKN1_CANAX Beta-glucan synthesis-associated protein SKN1 OS=Candida albicans
GN=SKN1 PE=2 SV=1
Length = 737
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 65 FGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP 109
FGI + W + W S V P+ R+ V V PK ++ D P
Sbjct: 658 FGISNNWAYIDWPSLVFPSTMRVDYVRVYQPKDQINVGCDPTDFP 702
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,560,045
Number of Sequences: 539616
Number of extensions: 3229688
Number of successful extensions: 6759
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6740
Number of HSP's gapped (non-prelim): 19
length of query: 215
length of database: 191,569,459
effective HSP length: 113
effective length of query: 102
effective length of database: 130,592,851
effective search space: 13320470802
effective search space used: 13320470802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)