Query 040870
Match_columns 215
No_of_seqs 154 out of 1589
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09501 potD spermidine/putre 100.0 1E-32 2.3E-37 245.9 15.7 189 3-204 145-347 (348)
2 COG0687 PotD Spermidine/putres 100.0 2.2E-30 4.8E-35 233.0 15.5 189 4-204 152-362 (363)
3 PRK10682 putrescine transporte 100.0 9.1E-30 2E-34 228.7 14.3 188 5-204 156-369 (370)
4 TIGR03261 phnS2 putative 2-ami 99.9 5.5E-23 1.2E-27 182.3 14.5 134 5-150 142-283 (334)
5 PF13343 SBP_bac_6: Bacterial 99.9 6.2E-23 1.3E-27 173.6 8.5 131 6-149 72-209 (242)
6 TIGR03227 PhnS 2-aminoethylpho 99.8 2.9E-20 6.4E-25 167.4 11.3 134 4-149 152-301 (367)
7 TIGR01254 sfuA ABC transporter 99.8 7.6E-20 1.6E-24 160.1 13.6 137 4-152 118-264 (304)
8 TIGR01276 thiB thiamine ABC tr 99.8 1.5E-19 3.3E-24 158.4 14.2 134 4-150 118-261 (309)
9 PRK11622 hypothetical protein; 99.8 3.8E-19 8.2E-24 162.1 14.1 142 3-156 169-347 (401)
10 PRK11205 tbpA thiamine transpo 99.8 6.7E-19 1.5E-23 155.9 12.4 133 4-149 139-281 (330)
11 COG1840 AfuA ABC-type Fe3+ tra 99.7 4.5E-17 9.7E-22 143.0 12.9 130 5-146 103-242 (299)
12 PRK15046 2-aminoethylphosphona 99.7 7.5E-17 1.6E-21 144.0 13.3 136 4-151 147-296 (349)
13 TIGR01256 modA molybdenum ABC 99.6 3E-15 6.5E-20 124.5 5.2 128 4-147 84-213 (216)
14 COG4143 TbpA ABC-type thiamine 99.5 2.4E-14 5.3E-19 125.9 9.5 140 3-156 142-293 (336)
15 PRK10752 sulfate transporter s 99.5 1.4E-13 2.9E-18 123.1 10.7 133 2-148 124-276 (329)
16 TIGR00971 3a0106s03 sulfate/th 99.5 3.3E-13 7.2E-18 119.8 11.4 132 3-149 114-266 (315)
17 PF13416 SBP_bac_8: Bacterial 99.5 5.6E-13 1.2E-17 113.7 11.8 140 5-154 108-262 (281)
18 PRK10852 thiosulfate transport 99.4 1.8E-12 3.9E-17 116.3 13.1 132 2-148 130-282 (338)
19 PF13531 SBP_bac_11: Bacterial 99.2 1.5E-10 3.3E-15 96.9 10.5 128 3-145 90-223 (230)
20 PRK03537 molybdate ABC transpo 98.9 1.3E-08 2.8E-13 83.9 10.4 130 3-148 33-179 (188)
21 PRK10677 modA molybdate transp 98.9 7.4E-09 1.6E-13 89.4 7.7 117 6-146 127-249 (257)
22 COG4134 ABC-type uncharacteriz 98.8 5.8E-09 1.3E-13 92.6 5.9 130 3-144 162-322 (384)
23 COG1613 Sbp ABC-type sulfate t 98.6 4.2E-07 9E-12 79.7 11.4 135 2-148 141-293 (348)
24 COG0725 ModA ABC-type molybdat 97.9 4.2E-05 9.1E-10 66.4 8.1 122 5-145 123-248 (258)
25 PRK04168 molybdate ABC transpo 97.9 5.1E-05 1.1E-09 68.1 8.0 72 60-148 213-311 (334)
26 COG4150 CysP ABC-type sulfate 97.8 7.9E-05 1.7E-09 64.1 7.4 141 2-153 135-295 (341)
27 PF01547 SBP_bac_1: Bacterial 97.5 0.00022 4.7E-09 60.8 6.7 73 59-143 224-314 (315)
28 PRK09474 malE maltose ABC tran 97.5 0.00038 8.3E-09 62.6 8.3 96 41-148 216-321 (396)
29 TIGR03730 tungstate_WtpA tungs 97.2 0.00083 1.8E-08 58.8 5.8 65 60-137 186-273 (273)
30 COG4588 AcfC Accessory coloniz 97.1 0.002 4.4E-08 54.1 7.1 126 2-146 111-245 (252)
31 TIGR03850 bind_CPR_0540 carboh 97.1 0.0028 6.1E-08 57.7 8.7 75 60-146 269-354 (437)
32 TIGR03851 chitin_NgcE carbohyd 96.8 0.0035 7.7E-08 57.6 7.0 83 60-154 272-368 (450)
33 PF02030 Lipoprotein_8: Hypoth 96.1 0.0054 1.2E-07 57.5 3.8 71 57-139 251-335 (493)
34 COG1653 UgpB ABC-type sugar tr 95.8 0.023 5E-07 50.6 6.5 82 59-152 256-350 (433)
35 PRK10974 glycerol-3-phosphate 94.3 0.071 1.5E-06 48.8 5.1 96 41-148 233-343 (438)
36 PRK11063 metQ DL-methionine tr 88.9 5.6 0.00012 34.7 10.4 82 52-146 176-259 (271)
37 PF12727 PBP_like: PBP superfa 86.3 3.2 6.9E-05 34.3 7.0 105 2-137 79-192 (193)
38 TIGR00363 lipoprotein, YaeC fa 85.7 11 0.00023 32.7 10.3 77 57-146 170-246 (258)
39 PRK09861 cytoplasmic membrane 84.2 15 0.00032 32.1 10.5 127 4-146 120-260 (272)
40 TIGR01098 3A0109s03R phosphate 71.9 20 0.00044 29.7 7.4 51 59-111 184-238 (254)
41 cd00134 PBPb Bacterial peripla 67.0 20 0.00043 27.6 6.0 71 55-139 131-203 (218)
42 COG1910 Periplasmic molybdate- 64.1 25 0.00054 30.0 6.2 117 2-147 85-207 (223)
43 smart00062 PBPb Bacterial peri 63.0 54 0.0012 24.9 7.8 60 52-112 129-191 (219)
44 COG2182 MalE Maltose-binding p 60.7 16 0.00034 34.1 4.9 94 41-148 231-336 (420)
45 COG2998 TupB ABC-type tungstat 58.3 17 0.00036 31.5 4.2 51 88-148 208-260 (280)
46 PF13379 NMT1_2: NMT1-like fam 54.2 32 0.0007 28.8 5.5 114 4-140 104-232 (252)
47 PF09084 NMT1: NMT1/THI5 like; 52.2 29 0.00063 28.0 4.7 85 53-140 25-114 (216)
48 TIGR03431 PhnD phosphonate ABC 48.7 58 0.0013 27.8 6.3 29 59-87 178-206 (288)
49 PRK11553 alkanesulfonate trans 45.0 42 0.00091 29.0 4.9 69 59-140 166-236 (314)
50 COG3221 PhnD ABC-type phosphat 44.3 96 0.0021 27.5 7.0 77 39-115 54-137 (299)
51 TIGR01729 taurine_ABC_bnd taur 43.3 43 0.00093 28.8 4.6 68 58-140 136-209 (300)
52 PF03202 Lipoprotein_10: Putat 42.6 26 0.00057 27.6 2.8 29 103-143 6-34 (135)
53 TIGR03871 ABC_peri_MoxJ_2 quin 41.7 1.5E+02 0.0033 23.8 7.6 67 59-139 144-215 (232)
54 smart00079 PBPe Eukaryotic hom 41.3 1.4E+02 0.0031 21.9 7.4 58 52-112 47-105 (134)
55 COG4521 TauA ABC-type taurine 40.9 37 0.0008 29.9 3.7 79 43-122 51-132 (334)
56 TIGR01728 SsuA_fam ABC transpo 38.0 67 0.0014 26.7 4.9 68 59-139 138-209 (288)
57 PF12974 Phosphonate-bd: ABC t 36.1 1.6E+02 0.0035 24.2 7.0 76 39-114 16-97 (243)
58 PF00497 SBP_bac_3: Bacterial 34.0 1.3E+02 0.0028 23.5 5.8 37 52-88 134-171 (225)
59 TIGR01729 taurine_ABC_bnd taur 33.4 70 0.0015 27.4 4.4 42 53-94 31-73 (300)
60 PF12849 PBP_like_2: PBP super 32.7 43 0.00093 28.4 2.9 35 96-141 246-281 (281)
61 PRK11553 alkanesulfonate trans 31.7 1.5E+02 0.0033 25.5 6.2 35 59-93 67-101 (314)
62 PF00123 Hormone_2: Peptide ho 28.7 37 0.0008 19.3 1.2 11 129-139 18-28 (28)
63 PF13379 NMT1_2: NMT1-like fam 28.6 1E+02 0.0023 25.7 4.6 43 45-88 29-74 (252)
64 TIGR03427 ABC_peri_uca ABC tra 28.1 1.1E+02 0.0025 27.2 4.9 68 59-139 143-213 (328)
65 TIGR01728 SsuA_fam ABC transpo 26.6 1.2E+02 0.0026 25.1 4.6 35 59-93 40-74 (288)
66 TIGR03414 ABC_choline_bnd chol 22.8 3.1E+02 0.0067 23.9 6.6 24 61-84 164-187 (290)
67 TIGR01098 3A0109s03R phosphate 21.7 4.5E+02 0.0097 21.4 8.5 25 59-83 75-99 (254)
No 1
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=100.00 E-value=1e-32 Score=245.93 Aligned_cols=189 Identities=24% Similarity=0.359 Sum_probs=165.3
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHHHHH-Hc----------cHHHHHHHHHHhccccceeccchhhhhhhcCcEE
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQA-AA----------GRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVW 71 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al-~~----------g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~ 71 (215)
+.+|+||+|||+|+|+|+|+|.++..+.+.+++ .. +.+++.+.|.++++++..|+.+...+.|.+||++
T Consensus 145 ~~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~ 224 (348)
T PRK09501 145 PKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVN 224 (348)
T ss_pred CCCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEE
Confidence 457899999999999999999998888777664 22 3567899999999999888776677899999999
Q ss_pred EEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 72 IAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 72 ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
++++|+++...++..+.++++++|+||+..|+|+++|+++++|++ +|++||||++|||.|..++...+
T Consensus 225 i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~e------------~A~~Fi~~llspe~q~~~~~~~~ 292 (348)
T PRK09501 225 LGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAETIG 292 (348)
T ss_pred EEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHHhC
Confidence 999999999888888899999999999999999999999999998 99999999999999988877777
Q ss_pred ChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 152 LPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
+++.+..+.+.+++++ +.++|+++.+.+++++.++++ ..+.|+++|++||+.
T Consensus 293 ~~~~n~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~ 347 (348)
T PRK09501 293 YPTPNLAARKLLSPEVANDKSLYPDAETIKKGEWQNDVGA-ASSIYEEYYQKLKAG 347 (348)
T ss_pred CCChhHHHHHhCCHHHhcCCCcCcCHHHHhccEEecCCCH-HHHHHHHHHHHHhcc
Confidence 7777776666666665 248999999999999999986 468899999999974
No 2
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=233.04 Aligned_cols=189 Identities=28% Similarity=0.382 Sum_probs=163.0
Q ss_pred CCCCChhhhcCcc----CCCc-eeeecChhHHHHHHHH-c----------cHHHHHHHHHHhcc-ccceeccchhhhhhh
Q 040870 4 NGFKDWKDLWLPE----LAGR-ISMVNSPREVIGTQAA-A----------GRIAVQQNLALLGN-QVRLFDRTHYLKVFG 66 (215)
Q Consensus 4 ~~p~sW~dL~dp~----~~Gr-i~~~d~~~~~~~~al~-~----------g~~~a~~~L~~l~~-~v~~~~~~~~~~~~~ 66 (215)
.+|+||+|||||+ ++|+ +.+.|++++++++++. . .++++.+.|.++++ ++..++++++.+.|+
T Consensus 152 ~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp~~~~~~~~~~~~~~l~ 231 (363)
T COG0687 152 PPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLA 231 (363)
T ss_pred CCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhCcccEEEecchHHHHHHh
Confidence 5689999999998 8998 9999999999988752 1 35689999999999 666667788999999
Q ss_pred cCcEEEEEechhcHHHHH--HcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 67 IGDVWIAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~--~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
+||++++++|+|++..++ +.+.+++|++|+||+.+|+|+|+|||+++|++ +||+||||+++||+|+
T Consensus 232 ~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~------------~A~~fInf~~~pe~~a 299 (363)
T COG0687 232 NGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVD------------AAYKFINFLLDPEVAA 299 (363)
T ss_pred cCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceeeeEeeeeeCCCCCHH------------HHHHHHHHhhCHHHHH
Confidence 999999999999999995 57778999999999999999999999999998 8999999999999999
Q ss_pred CCCCCCCChhhhhcCCCCCchh---hhcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 145 PFNTRVKLPEELLKGKPSLDTK---LIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~---l~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
.++..++|++.+..+.+.++.+ .+..+|+.+.+.+......+.++..+.|.+.|+++++.
T Consensus 300 ~~~~~~~y~~~n~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (363)
T COG0687 300 KLAEFVGYAPPNKAARKLLPKEIKDDPAIYPTAEILKKLFGQKDLGPEALRLYTKAWQEIKAW 362 (363)
T ss_pred HHHHhccCCCCCHHHHHhCcHhhhcCcccCCCHHHhhcccchhhccHHHHHHHHHHHHHHhcc
Confidence 9999888888887644443322 24589998888888888888766789999999999864
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.96 E-value=9.1e-30 Score=228.74 Aligned_cols=188 Identities=22% Similarity=0.348 Sum_probs=158.8
Q ss_pred CCCChhhhcCccCCCc-----eeeecChhHHHHHHH-Hcc----------H-HHHHHHHHHhccccceeccchhhhhhhc
Q 040870 5 GFKDWKDLWLPELAGR-----ISMVNSPREVIGTQA-AAG----------R-IAVQQNLALLGNQVRLFDRTHYLKVFGI 67 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gr-----i~~~d~~~~~~~~al-~~g----------~-~~a~~~L~~l~~~v~~~~~~~~~~~~~~ 67 (215)
+|+||++||+|+++++ +++.+.+.++++.++ ..| + +++.++|.+++++++.|++++..+.|.+
T Consensus 156 pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~ 235 (370)
T PRK10682 156 PVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLAN 235 (370)
T ss_pred CCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhchhhEEEcCcHHHHHHhc
Confidence 5799999999987665 788888888777664 222 2 4788999999999887766667789999
Q ss_pred CcEEEEEechhcHHHHH------HcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHH
Q 040870 68 GDVWIAVGWSSDVLPAV------KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTA 141 (215)
Q Consensus 68 Gev~ia~~w~~~~~~~~------~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe 141 (215)
||++++++|++++..++ +.+.++++++|+||+.+|.|+++|+++++|++ +|++||||+++||
T Consensus 236 Gev~~~~~w~~~~~~~~~~~~~~~~~~~i~~v~P~eG~~~~~d~~~I~k~a~~~e------------~A~~Fi~f~lspe 303 (370)
T PRK10682 236 GDICVAIGWAGDVWQASNRAKEAKNGVNVSYSIPKEGALAFFDVFAMPADAKNKD------------EAYQFLNYLLRPD 303 (370)
T ss_pred CCEEEEEeecHHHHHHHHHHHhcccCCceEEEECCCcchhheeeeEEECCCCCHH------------HHHHHHHHHhCHH
Confidence 99999999999987654 34678999999999999999999999999998 9999999999999
Q ss_pred HhCCCCCCCCChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 142 RALPFNTRVKLPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
+|+.++...+|.+.+..+.+.+++.+ +.++|+.+.+.+++++..++++..+.|+++|+++|+.
T Consensus 304 ~qa~~a~~~~y~p~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 369 (370)
T PRK10682 304 VIAHISDHVFYANANKAATPLVSAEVRDNPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG 369 (370)
T ss_pred HHHHHHHHhCCCCccHHHHHhcCHHHhcCCCcCCCHHHHhCcEEecCCCHHHHHHHHHHHHHHHcc
Confidence 99988888887777666655565544 3578999999999999999988888999999999974
No 4
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=5.5e-23 Score=182.25 Aligned_cols=134 Identities=19% Similarity=0.269 Sum_probs=115.6
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhccccceecc--chhhhhhhcCcEEEEEec
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVGW 76 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~w 76 (215)
+|+||+||+||+|+|||+|.|+.....+.. + ..|.++++++|.++++|+..|++ ++..+.+.+||++++++|
T Consensus 142 ~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G~~~~~~~l~~l~~n~~~~~~s~~~~~~~v~~Ge~~i~~~~ 221 (334)
T TIGR03261 142 KPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMGEDKGWDYMDKLHKNIAVYTHSGSKPCKLAGMGEFPIGISM 221 (334)
T ss_pred CCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhChHHHHHHHHHHHhccCccCCCChHHHHHHhCCCceEEEEe
Confidence 589999999999999999998654332221 1 35778899999999999888754 356688999999999999
Q ss_pred hhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870 77 SSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV 150 (215)
Q Consensus 77 ~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~ 150 (215)
++++.....+|.++++++|+||+..++++++|+|+++|++ +|++||||++|||.|..++...
T Consensus 222 ~~~~~~~~~~g~~v~~~~P~eG~~~~~~~~ai~k~a~~~e------------~A~~fidfllS~e~Q~~~~~~~ 283 (334)
T TIGR03261 222 AYRALKEKKKGAPIDVVFPKEGLGWDIEATAIIKGSKNND------------AAKKLVDWSISDEAMELYAKNY 283 (334)
T ss_pred cHHHHHHHhCCCCeEEEecCCCCeeeeeeeEEEcCCCCHH------------HHHHHHHHHcCHHHHHHHHhcC
Confidence 9999888888899999999999999999999999999998 8999999999999998775543
No 5
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.88 E-value=6.2e-23 Score=173.64 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=111.3
Q ss_pred CCChhhhcCccCCCceeeecChhHHHHH---HH--HccHHHHHHHHHHhccccceeccchhhhhhhcCc--EEEEEechh
Q 040870 6 FKDWKDLWLPELAGRISMVNSPREVIGT---QA--AAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGD--VWIAVGWSS 78 (215)
Q Consensus 6 p~sW~dL~dp~~~Gri~~~d~~~~~~~~---al--~~g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Ge--v~ia~~w~~ 78 (215)
|+||+||++|+|+|+|++.++......+ ++ ..|.+.+.++|++++.+...+.+.+..+.+.+|| +.+++.|.+
T Consensus 72 P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~l~~n~~~~~~~~~~~~~~~Ge~~~~i~~~~~~ 151 (242)
T PF13343_consen 72 PTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAEAYGEDAGWEWLRELKANGATFSSSQAAQAVASGEGAVAIGISWYS 151 (242)
T ss_dssp TSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSCHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccchhhhhHhhCCCceEEEEEehHH
Confidence 7999999999999999999976432222 22 2468889999999999887777667889999999 999999998
Q ss_pred cHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCC
Q 040870 79 DVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTR 149 (215)
Q Consensus 79 ~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~ 149 (215)
........+ ++++++|+||+.+|+++++|+++++|++ +|++||||+|||+.|..++..
T Consensus 152 ~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~------------~A~~fi~~lls~e~q~~~~~~ 209 (242)
T PF13343_consen 152 RAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPE------------AAKKFINFLLSPEAQKILAQA 209 (242)
T ss_dssp HHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHH------------HHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHH------------HHHHHHHHHCCHHHHHHHHHh
Confidence 888888777 9999999999999999999999999998 999999999999998765443
No 6
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.83 E-value=2.9e-20 Score=167.37 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=103.6
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHH-----H-Hcc-HHHHHHHHHHhccccceeccc--hhhhhhhcCcEEEEE
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAG-RIAVQQNLALLGNQVRLFDRT--HYLKVFGIGDVWIAV 74 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g-~~~a~~~L~~l~~~v~~~~~~--~~~~~~~~Gev~ia~ 74 (215)
.+|+||+|||+|+|+|||++.++.....+.. + ..| .++++++|.++++|+..+.++ ...+.+.+||++++.
T Consensus 152 ~~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~~d~a~~~l~~l~~n~~~~~~~~~~~~~~~~~Gev~i~~ 231 (367)
T TIGR03227 152 SAPASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEANNKFHSAGTGKLNALLNKGEIAVAN 231 (367)
T ss_pred CCCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCCchHHHHHHHHHHhcCCccCCCchhHHHHHhcCceEEEc
Confidence 4689999999999999999998654433221 1 134 678999999999998776542 445778999999986
Q ss_pred echhcHH-HHHHcCCCeEEEecCCC------ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 75 GWSSDVL-PAVKRMSNVAVVVPKSG------ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 75 ~w~~~~~-~~~~~~~~v~~v~P~eG------~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
++..... ...+.+.++++++|++| +..+.++++|+++++|++ +|++||||++|||.|..++
T Consensus 232 g~~~~~~~~~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e------------~A~~Fidfllspe~Q~~~a 299 (367)
T TIGR03227 232 GDLQMDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQD------------AGKKLIDFLLSADAQAKVP 299 (367)
T ss_pred cHHHHHHHHHHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHH------------HHHHHHHHHcCHHHHHHHH
Confidence 5443222 23445679999999985 446688999999999998 8999999999999998765
Q ss_pred CC
Q 040870 148 TR 149 (215)
Q Consensus 148 ~~ 149 (215)
..
T Consensus 300 ~~ 301 (367)
T TIGR03227 300 DL 301 (367)
T ss_pred hc
Confidence 54
No 7
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.83 E-value=7.6e-20 Score=160.08 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=107.4
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH------HccHHHHHHHHHHhcccc-ceecc-chhhhhhhcCcEEEEEe
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA------AAGRIAVQQNLALLGNQV-RLFDR-THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al------~~g~~~a~~~L~~l~~~v-~~~~~-~~~~~~~~~Gev~ia~~ 75 (215)
.+|+||+||++|+|+|||+|.++....++.++ ..|.+.+.+++++++++. ..+.+ ++....+.+||++++++
T Consensus 118 ~~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~~~ 197 (304)
T TIGR01254 118 NPPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVYGEDDAPQAWKQLRKKTVTVTKGWSEAYGTFLGGEYDLVLS 197 (304)
T ss_pred CCCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhcChHHHHHHHHHHHhCCeecCCCCHHHHHHHhcCCccEEEE
Confidence 46899999999999999999986555444432 135556677888777653 33322 35567899999999999
Q ss_pred chhcH-H-HHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCCC
Q 040870 76 WSSDV-L-PAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKL 152 (215)
Q Consensus 76 w~~~~-~-~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~~ 152 (215)
|+++. . ....++.++.+++|++|+.+|+++++|+++++|++ +|++|||||+|||.|..+++....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ai~k~a~n~e------------~A~~fi~fllspe~q~~~a~~~~~ 264 (304)
T TIGR01254 198 YATSPAYHVLFEKKDNYAALNFSEGHYLQVEGAARLKGAKQPE------------LADKFVQFLLSPAVQNAIPTGNWM 264 (304)
T ss_pred eccchhhhhhhccCCceeEEecCCCCEEEEEEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhcCee
Confidence 99874 3 23345678999999999999999999999999998 899999999999999887765433
No 8
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.82 E-value=1.5e-19 Score=158.37 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=100.1
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH------HccHHHHHHHHHHhcccccee-cc-chhhhhhhcCcEEEEEe
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA------AAGRIAVQQNLALLGNQVRLF-DR-THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al------~~g~~~a~~~L~~l~~~v~~~-~~-~~~~~~~~~Gev~ia~~ 75 (215)
.+|+||+||++|+++|||+|.++..+.++.++ ..|. .+.+.+..++.+...+ .+ ++....+++||++++++
T Consensus 118 ~~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~g~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~i~i~ 196 (309)
T TIGR01276 118 NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGD-DAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLS 196 (309)
T ss_pred CCCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHcCc-cHHHHHHHHHHcCceeCCChHHHHHHHHcCCcCEEEe
Confidence 46899999999999999999986655544432 1221 1223344443433332 22 35567899999999999
Q ss_pred chhcHHHH--HHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870 76 WSSDVLPA--VKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV 150 (215)
Q Consensus 76 w~~~~~~~--~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~ 150 (215)
|+++.... ...+.++.+++|+||+..|+++++|+++++|++ +|++||||++|||.|..++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------~A~~Fidflls~e~Q~~~~~~~ 261 (309)
T TIGR01276 197 YTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------LAQKFLQFLVSPAFQNAIPTGN 261 (309)
T ss_pred cCCcHHHHhhcccCcccceEecCCCCEeEEEEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHhhC
Confidence 98876432 233457888999999999999999999999998 8999999999999998776543
No 9
>PRK11622 hypothetical protein; Provisional
Probab=99.81 E-value=3.8e-19 Score=162.06 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=109.0
Q ss_pred CCCCCChhhhcC--ccCCCceeeecChh---HHHHH-HH--H-cc----------------HHHHHHHHHHhcccc----
Q 040870 3 ENGFKDWKDLWL--PELAGRISMVNSPR---EVIGT-QA--A-AG----------------RIAVQQNLALLGNQV---- 53 (215)
Q Consensus 3 ~~~p~sW~dL~d--p~~~Gri~~~d~~~---~~~~~-al--~-~g----------------~~~a~~~L~~l~~~v---- 53 (215)
+++|+||+||++ ++|+||+++.+++. ..+.. ++ . ++ .++++++|.++++++
T Consensus 169 ~~~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~g 248 (401)
T PRK11622 169 PQPPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKATFARVTAPLWDYLDELHPYLWREG 248 (401)
T ss_pred CCCCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHHHHHHhhhHHHHHHHHhCHHHHhcc
Confidence 457999999998 89999999986531 11111 11 1 11 256789999999876
Q ss_pred ceeccc--hhhhhhhcCcEEEEEechhc-HHHHHHcCC---CeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCCh
Q 040870 54 RLFDRT--HYLKVFGIGDVWIAVGWSSD-VLPAVKRMS---NVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPF 127 (215)
Q Consensus 54 ~~~~~~--~~~~~~~~Gev~ia~~w~~~-~~~~~~~~~---~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~ 127 (215)
..|..+ +..++|.+||+++++.|++. +...+.+|. ++++++|++|+..++++++||++++|++
T Consensus 249 ~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~n~~----------- 317 (401)
T PRK11622 249 KTFPASPAELDQLLADGELDLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIGNTHFVAIPFNANAKA----------- 317 (401)
T ss_pred ccCCCChHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCCCceeEEcCCCCeeccceeEEeeCCCCCHH-----------
Confidence 455433 56789999999999999974 444455553 6899999999999999999999999998
Q ss_pred HHHHHHHHHHHcHHHhCCCCCC--CCChhhh
Q 040870 128 PLIHQWIEFCLQTARALPFNTR--VKLPEEL 156 (215)
Q Consensus 128 ~~A~~FInf~lspe~~~~~~~~--~~~~~~~ 156 (215)
+|++||||++|||.|..+... .++++.+
T Consensus 318 -~A~~finfllS~e~Q~~~~~~~~~g~~P~~ 347 (401)
T PRK11622 318 -GAKVVANFLLSPEAQLRKADPAVWGDPSVL 347 (401)
T ss_pred -HHHHHHHHHcCHHHHHHhcchhhcCCCCcC
Confidence 899999999999999887763 3554443
No 10
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.79 E-value=6.7e-19 Score=155.88 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=102.6
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH------HccHHHHHHHHHHhccccceecc--chhhhhhhcCcEEEEEe
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA------AAGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al------~~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~ 75 (215)
.+|+||+||++|+|+|||++.|+.....+..+ ..| +.+.+.+.++++++..+.. ++..+.+.+||++++++
T Consensus 139 ~~P~sw~DL~~~~~~g~i~~~dp~~s~~~~~~~~~~~~~~g-~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~i~ 217 (330)
T PRK11205 139 NPPKSLKELVESDQNWKVIYQDPRTSTPGLGLLLWMKKVYG-DDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGEADLVLS 217 (330)
T ss_pred CCCCCHHHHhChhhcCCEEecCCCCCcHHHHHHHHHHHhcC-chHHHHHHHHHhCCeeeCCChHHHHHHHHcCCccEEEe
Confidence 46899999999999999999875543333321 122 2334566777777655432 35668899999999999
Q ss_pred chhc-HHHHHHc-CCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCC
Q 040870 76 WSSD-VLPAVKR-MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTR 149 (215)
Q Consensus 76 w~~~-~~~~~~~-~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~ 149 (215)
|+++ +.....+ +.++.+++|+||+..|+++++|+++++|++ +|++||||++|||.|..++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ai~k~a~n~e------------~A~~Fi~fllS~e~Q~~~~~~ 281 (330)
T PRK11205 218 YTTSPAYHIIAEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTG 281 (330)
T ss_pred CCCcHHHHHhhccCCceeEEEcCCCCeEEEEEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHhhhh
Confidence 9875 3444444 447888899999999999999999999998 899999999999999988664
No 11
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.5e-17 Score=143.02 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHH---HH--HccHHHHHHHHHHhcccccee--ccc-hhhhhhhcCcEEEEEec
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGT---QA--AAGRIAVQQNLALLGNQVRLF--DRT-HYLKVFGIGDVWIAVGW 76 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~---al--~~g~~~a~~~L~~l~~~v~~~--~~~-~~~~~~~~Gev~ia~~w 76 (215)
.|+||.||.+|+|+|+|.+.++....... .. ..|.+.++++|..++.|...+ .++ ...+.+++||+.++++|
T Consensus 103 ~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~~~~G~~~~~~~l~~l~~n~~~~~~~~~~~~~~~va~Ge~~vg~~~ 182 (299)
T COG1840 103 VPKSWADLAKPEYKGKVQMADPTSSGTAYAALLALQAYGEEKGWAYLKGLAANLATYTGGSSSVVAKVVAGGEAAVGLGN 182 (299)
T ss_pred CCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHHHhcChHHHHHHHHHHHHhcccccCCCcHHHHHHhhcCCceEEEEe
Confidence 48999999999999999888765443222 22 467889999999999987653 333 45568999999999999
Q ss_pred hhc--HHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 77 SSD--VLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 77 ~~~--~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
.+. ......++.++.+++|+||+.+.+..++|.++++|++ +|++||+|++|+|.|..+
T Consensus 183 ~~~~~~~~~~~~~~~v~iv~P~~G~~v~~~~vaiik~a~~~e------------~Ak~fid~llS~egQ~~~ 242 (299)
T COG1840 183 LYYGAYAKDKAKGAPVEVVYPEEGTGVNPSGVALLKKAKNPE------------AAKLFIDFLLSKEGQEIL 242 (299)
T ss_pred eccHHHHHhhccCCceEEEecCCCceeeeeeeeeecCCCCHH------------HHHHHHHHHcCHHHHHHH
Confidence 995 3334445678999999999999999999999999998 899999999999999633
No 12
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.72 E-value=7.5e-17 Score=144.04 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=102.6
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhccccceeccc--hhhhhhhcCcEEEEEe
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLFDRT--HYLKVFGIGDVWIAVG 75 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~~~~--~~~~~~~~Gev~ia~~ 75 (215)
.+|+||+||++|+|+|||++.++.....+.. + ..|.++++++|+++++++..+.++ ...+.+.+|++.++.+
T Consensus 147 ~~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~G~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~Ge~~~~~g 226 (349)
T PRK15046 147 TAPATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLMGKDKAFDYLAKLQANNVGPSKSTGKLTPLVSKGEIYVANG 226 (349)
T ss_pred CCCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCCCCCCcchhhHHhhcCceEEecc
Confidence 4689999999999999999987543322221 1 356778899999999887665432 4457899999998865
Q ss_pred chhcH-HHHHHcCCCeEEEecCC--C---ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCC
Q 040870 76 WSSDV-LPAVKRMSNVAVVVPKS--G---ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTR 149 (215)
Q Consensus 76 w~~~~-~~~~~~~~~v~~v~P~e--G---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~ 149 (215)
+.... ...++.+.++++++|++ | +....++++|+++++|++ +|++||||++||++|..++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~aI~~~s~n~~------------~A~~Fi~fllS~e~Q~~~a~~ 294 (349)
T PRK15046 227 DLQMNLAQAEHGGPNVKIFFPAKDGGERSTFALPYVIGLVKGAPNSE------------NGKKLIDFLLSKEAQTKVSDM 294 (349)
T ss_pred HHHHHHHHHhcCCCceEEEecCCCCCCcceeeccceeEEecCCCCHH------------HHHHHHHHHhCHHHHHHHHhh
Confidence 43222 22344578899999987 3 445668899999999998 899999999999999877665
Q ss_pred CC
Q 040870 150 VK 151 (215)
Q Consensus 150 ~~ 151 (215)
..
T Consensus 295 ~~ 296 (349)
T PRK15046 295 AW 296 (349)
T ss_pred cc
Confidence 33
No 13
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=99.56 E-value=3e-15 Score=124.55 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=95.6
Q ss_pred CCCCChhhhcCccC-CCceeeecChhHHHHHHHHccHHHHHHHHHHhccccceecc-chhhhhhhcCcEEEEEechhcHH
Q 040870 4 NGFKDWKDLWLPEL-AGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSDVL 81 (215)
Q Consensus 4 ~~p~sW~dL~dp~~-~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~ 81 (215)
..|+||+||. +.+ ++||++.|+.....|.....-.. ....+.++++|+....+ .+..+.+.+||++++++|.+++.
T Consensus 84 ~~~~s~~dL~-~~~~~~~i~~~~P~~~~~g~~~~~~~~-~~g~~~~l~~n~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~ 161 (216)
T TIGR01256 84 RVVDDLDILK-KWVADKRVAIGDPKHAPYGAAAKEVLQ-KLGLWETLKKKLVYGEDVRQALQFVETGNAPAGIVALSDVI 161 (216)
T ss_pred CCcCcHHHHh-hcccCCeEEecCCCcCcChHHHHHHHH-HCCChhhhhhheeecCcHHHHHHHHHcCCCCEEeeehhhhc
Confidence 3578999997 777 79999998655544443211111 12345567777643333 35678899999999999998876
Q ss_pred HHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 82 PAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 82 ~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
... +....+++|++|...+.++++|+++++|++ +|++||||++||+.|..+.
T Consensus 162 ~~~--~~~~~~~~P~~~~~~~~~~~ai~k~a~~~~------------~A~~fi~fl~s~e~q~~~~ 213 (216)
T TIGR01256 162 PSK--KVGSVATFPEDLYKPIRYPAVIVKGGKNNA------------AAKAFIDYLKSPEAKEILR 213 (216)
T ss_pred ccC--CccEEEEeCccccCCccccEEEEECCCChH------------HHHHHHHHHcCHHHHHHHH
Confidence 553 334668899999988889999999999998 8999999999999986543
No 14
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.54 E-value=2.4e-14 Score=125.87 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHHHHH------HccHHHHHHHHHHhccc-ccee--ccchhhhhhhcCcEEEE
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQA------AAGRIAVQQNLALLGNQ-VRLF--DRTHYLKVFGIGDVWIA 73 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al------~~g~~~a~~~L~~l~~~-v~~~--~~~~~~~~~~~Gev~ia 73 (215)
.+||+|.+||..|+|+|+|.+.|+..+.-|.++ ..|.+.+.+++++|++| +.+. |++.|. +|..||+.+.
T Consensus 142 ~~ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~-aFt~GEap~V 220 (336)
T COG4143 142 KNPPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYG-AFTKGEAPLV 220 (336)
T ss_pred cCCcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhccccHHHHHHHHHhCCeEecCcHHHHHH-HHhCCccceE
Confidence 457899999999999999999998777766654 25677889999999988 4444 444554 9999999999
Q ss_pred EechhcHHHHHH-cC-CCe-EEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870 74 VGWSSDVLPAVK-RM-SNV-AVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV 150 (215)
Q Consensus 74 ~~w~~~~~~~~~-~~-~~v-~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~ 150 (215)
++|+.+.....- ++ .+. ...+| ||..+.+++.++.|+++|++ +|.+|++||+|||.|..+.+.+
T Consensus 221 LSYtTspay~~~~~~~~~~~a~~f~-eG~ylqiEgaa~~k~~knpe------------LA~~F~~FmlS~e~Q~~ip~~n 287 (336)
T COG4143 221 LSYTTSPAYHVYPEKKDRYAAALFP-EGHYLQVEGAAVLKGAKNPE------------LADKFLQFMLSPEFQDAIPTTN 287 (336)
T ss_pred EEeccCcchhcccccccccchhcCC-CCceeEEEeeeeecCCCCHH------------HHHHHHHHHhCHHHHhhCCccc
Confidence 999887765442 22 233 44555 68999999999999999998 9999999999999999988876
Q ss_pred CChhhh
Q 040870 151 KLPEEL 156 (215)
Q Consensus 151 ~~~~~~ 156 (215)
-.-+..
T Consensus 288 wm~Pa~ 293 (336)
T COG4143 288 WMYPAV 293 (336)
T ss_pred eeeecC
Confidence 543333
No 15
>PRK10752 sulfate transporter subunit; Provisional
Probab=99.50 E-value=1.4e-13 Score=123.09 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCCCCCChhhhcCccCCCceeeecChhHHHHH-----H----HH---ccHHHHHHHHHHhccccceeccc--h-hhhhhh
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSPREVIGT-----Q----AA---AGRIAVQQNLALLGNQVRLFDRT--H-YLKVFG 66 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~-----a----l~---~g~~~a~~~L~~l~~~v~~~~~~--~-~~~~~~ 66 (215)
||..|+||+||++|.+ +|+|.|+..+..+. + +. ++.+++++++.++.+|+..+.++ . ....+.
T Consensus 124 np~~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~~~l~~~~g~~~~a~~~l~kL~~Nv~~~~~~~~~a~~~~v~ 201 (329)
T PRK10752 124 NPKQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVKALYKNVEVLDSGARGSTNTFVE 201 (329)
T ss_pred CCCCCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCcccCCCcchhhHHHH
Confidence 4567899999999986 79999865432221 1 11 12567999999999998876432 2 234466
Q ss_pred cCcEEEEEechhcHHHHHHc--CCCeEEEecCCCceeeeceEEE---eCCCCCcccccCCCCCCChHHHHHHHHHHHcHH
Q 040870 67 IGDVWIAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAI---PAASRLETKQIGGRVRGPFPLIHQWIEFCLQTA 141 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~~~--~~~v~~v~P~eG~~~~~d~~~I---~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe 141 (215)
+|+.+++++|..++.....+ +.++++|+|++|.........| .++++|++ .|++||||++|||
T Consensus 202 ~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~~~~va~v~~~~k~~~~~e------------~Ak~FidfllS~e 269 (329)
T PRK10752 202 RGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVDKKGTRE------------VAEAYLKYLYSPE 269 (329)
T ss_pred cCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccccceeEEEEeccccCCCHH------------HHHHHHHHhcCHH
Confidence 89999999999988776554 6899999999986544433223 45678887 8999999999999
Q ss_pred HhCCCCC
Q 040870 142 RALPFNT 148 (215)
Q Consensus 142 ~~~~~~~ 148 (215)
.|..++.
T Consensus 270 aQ~i~a~ 276 (329)
T PRK10752 270 GQEIAAK 276 (329)
T ss_pred HHHHHHH
Confidence 9987644
No 16
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=99.47 E-value=3.3e-13 Score=119.80 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=95.7
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHH-HH-H-----H-----ccHHHHHHHHHHhccccceeccc---hhhhhhhc
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIG-TQ-A-----A-----AGRIAVQQNLALLGNQVRLFDRT---HYLKVFGI 67 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~-~a-l-----~-----~g~~~a~~~L~~l~~~v~~~~~~---~~~~~~~~ 67 (215)
+..++||+||++|++ ||+|.|+.....+ .. + . ++.++++++|.++.+|+..|..+ .....+.+
T Consensus 114 ~~~i~sw~dL~~~~~--kiai~dp~~sg~~~~~~L~~~g~~~~~~~g~~~~a~~~l~~l~~nv~~~~~~~~~~~~~~v~~ 191 (315)
T TIGR00971 114 PKQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNGDQAKAQQFVTALLKNVEVLDSGARGATNTFVER 191 (315)
T ss_pred CCCCCCHHHHhCCCc--EEEeCChhhHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhccccCCCchHHHHHHHHc
Confidence 345789999999976 6888764332222 11 1 0 12466789999999999887554 24455779
Q ss_pred CcEEEEEechhcHHHHHHc--CCCeEEEecCCCceeeeceEEEeC----CCCCcccccCCCCCCChHHHHHHHHHHHcHH
Q 040870 68 GDVWIAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPA----ASRLETKQIGGRVRGPFPLIHQWIEFCLQTA 141 (215)
Q Consensus 68 Gev~ia~~w~~~~~~~~~~--~~~v~~v~P~eG~~~~~d~~~I~k----~a~~~~~~~~~~~~~~~~~A~~FInf~lspe 141 (215)
|++++++.|.+++...... +.++++++|++|.+.... +++.+ .+++++ +|++|||||+|||
T Consensus 192 Ge~dagivy~sda~~~~~~~~~~~i~iviP~e~~~i~~~-iavv~~~~~~~~~~e------------~A~~FidfLlS~e 258 (315)
T TIGR00971 192 GIGDVLIAWENEALLARKELGKDKFEIVTPSESILAEPT-VSVVDKVVEKKGTKK------------VAEAYLKYLYSPE 258 (315)
T ss_pred CceeEEEEEcHHHHHHHHhcCCCCeEEEECCCCcccccc-EEEEEcccCCCCCHH------------HHHHHHHHhcCHH
Confidence 9999999999998866543 458999999998776554 55554 345665 8999999999999
Q ss_pred HhCCCCCC
Q 040870 142 RALPFNTR 149 (215)
Q Consensus 142 ~~~~~~~~ 149 (215)
.|..+...
T Consensus 259 aq~i~ak~ 266 (315)
T TIGR00971 259 GQEIAAKN 266 (315)
T ss_pred HHHHHHHc
Confidence 99776553
No 17
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.46 E-value=5.6e-13 Score=113.74 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=113.9
Q ss_pred CCCChhhhcC--ccCCCceeeecChhHHHHHHH-Hc-----------cHHHHHHHHHHhccccceecc-chhhhhhhcCc
Q 040870 5 GFKDWKDLWL--PELAGRISMVNSPREVIGTQA-AA-----------GRIAVQQNLALLGNQVRLFDR-THYLKVFGIGD 69 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~Gri~~~d~~~~~~~~al-~~-----------g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Ge 69 (215)
.|+||++|++ ++++|++++.++........+ .. +..++.++|+++.++...+.+ ++..+.|.+|+
T Consensus 108 ~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~G~ 187 (281)
T PF13416_consen 108 PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSENFVEALEFLKELYDNGYFYGSGDDARQLFASGK 187 (281)
T ss_dssp GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSHHHHHHHHHHHHHHHTTSEETSHHHHHHHHHTTS
T ss_pred CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCHHHHHHHHHHHHHHHhcccccchhHHHHHhcCCC
Confidence 6899999999 899999999887654332222 21 146788999999887666644 36778999999
Q ss_pred EEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCC
Q 040870 70 VWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTR 149 (215)
Q Consensus 70 v~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~ 149 (215)
+.+.++|+.....+++.+.++++++|++|+..+.++++|+++++|++ .++|.+||+|+++|+.|..+...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~~~~~~----------~~aA~~fl~~l~s~e~q~~~~~~ 257 (281)
T PF13416_consen 188 VAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNGFAIPKNSKNPE----------AEAAWEFLKFLTSPEGQAEWAEA 257 (281)
T ss_dssp ESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEEEEEBTTSSTHH----------HHHHHHHHHHHTSHHHHHHHHHH
T ss_pred eeeecccHhHHHHHHHhCCCeeEecCccccccCcceEEEeCCCChHH----------HHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999888888889999999999999999999999999997 12399999999999999876664
Q ss_pred CCChh
Q 040870 150 VKLPE 154 (215)
Q Consensus 150 ~~~~~ 154 (215)
.++.+
T Consensus 258 ~g~~p 262 (281)
T PF13416_consen 258 TGYLP 262 (281)
T ss_dssp HTSEE
T ss_pred hCCCC
Confidence 44433
No 18
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=99.43 E-value=1.8e-12 Score=116.31 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=97.4
Q ss_pred CCCCCCChhhhcCccCCCceeeecChhHHHH----HHH---H---cc--HHHHHHHHHHhccccceeccc---hhhhhhh
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSPREVIG----TQA---A---AG--RIAVQQNLALLGNQVRLFDRT---HYLKVFG 66 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~----~al---~---~g--~~~a~~~L~~l~~~v~~~~~~---~~~~~~~ 66 (215)
||..|+||+||++|.+ +|.|.|+...-.| ++. . .| ...+++++.++..|+..+..+ .....+.
T Consensus 130 npk~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~~~~G~d~~~a~~~l~~l~~Nv~v~~~~~~~a~~~~v~ 207 (338)
T PRK10852 130 NPKNIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAE 207 (338)
T ss_pred CCCCCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcCCEecCCCcHHHHHHHH
Confidence 5677899999999986 6999885433222 111 1 12 234789999999999887543 4455678
Q ss_pred cCcEEEEEechhcHHHHHHc--CCCeEEEecCCCceeeeceEEEe-CC---CCCcccccCCCCCCChHHHHHHHHHHHcH
Q 040870 67 IGDVWIAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIP-AA---SRLETKQIGGRVRGPFPLIHQWIEFCLQT 140 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~~~--~~~v~~v~P~eG~~~~~d~~~I~-k~---a~~~~~~~~~~~~~~~~~A~~FInf~lsp 140 (215)
+|+++++++|..++....++ ..++.+++|++|..... .++|. ++ ++|++ +|++||||++|+
T Consensus 208 ~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~P~~~~~~~~-pvAvv~k~~~~~~~~e------------~AkaFidfL~S~ 274 (338)
T PRK10852 208 RGLGDVLISFESEVNNIRKQYEAQGYEVVVPKTNILAEF-PVAWVDKNVQANGTEK------------AAKAYLNYLYSP 274 (338)
T ss_pred cCCccEEEEechHHHHHHHhcCCCCeEEEeCCCCceeee-eEEEEEeccccCCCHH------------HHHHHHHHhcCH
Confidence 99999999999988766543 36789999998886555 66666 54 45555 899999999999
Q ss_pred HHhCCCCC
Q 040870 141 ARALPFNT 148 (215)
Q Consensus 141 e~~~~~~~ 148 (215)
|.|..+..
T Consensus 275 eaQ~i~ak 282 (338)
T PRK10852 275 QAQTIITD 282 (338)
T ss_pred HHHHHHHH
Confidence 99876554
No 19
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=99.19 E-value=1.5e-10 Score=96.91 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=93.6
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHHHHHHccHHH--HHHHHHHhccccceecc--chhhhhhhcCcEEEEEechh
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIA--VQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVGWSS 78 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~--a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~w~~ 78 (215)
+..++||+||.+|++ ||++.|+..+..|.....-+.. ..+.+.++..++..+.+ .+..+.+.+|+++++++|..
T Consensus 90 ~~~~~~~~dL~~~~~--~i~~~dP~~s~~g~~~~~~l~~~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~g~~d~~~~~~s 167 (230)
T PF13531_consen 90 PKGIRSWADLAQPGL--RIAIPDPSTSPSGLAALQVLAAAGGQELLDALQKNIVQYVPSTSQVLSAVASGEADAGIVYES 167 (230)
T ss_dssp TTSTTCHHHHCSTT----EEEE-TTTTHHHHHHHHHHHHHTHCHHHHHHHHTEEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred ccccCCHHHHhhccC--EEEecCcccChhhHHHHHHHHHcccHHHHHHHHHhCcccccchHHHHHHHHcCCCcceeeHHH
Confidence 346899999999987 8999997665555542111111 14577778877766643 36677899999999999988
Q ss_pred cHHHHHHcCCCeEEEecCCCcee-e-eceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 79 DVLPAVKRMSNVAVVVPKSGASL-W-ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 79 ~~~~~~~~~~~v~~v~P~eG~~~-~-~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
.+... ..+.++.+++|.++... . ...++|.++++|++ +|++|++||+|++.|.-
T Consensus 168 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~a~~f~~~L~s~~~q~~ 223 (230)
T PF13531_consen 168 QAIFA-RQGDPLSYVYPPDGVNSPPIDYPIAILKNAPHPE------------AARAFIDFLLSPEGQQI 223 (230)
T ss_dssp HHHHC-TSHTTEEEEE-STTTSSSEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHH
T ss_pred HHHHh-hcCCCeEEEECCchhcCCCEEEEEEEecCCCCHH------------HHHHHHHHHCCHHHHHH
Confidence 77544 45678999999888875 4 45689999999998 89999999999998854
No 20
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=83.90 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=83.9
Q ss_pred CCCCCChhh-hcCccCCCceeeecChhHHHHHH----H--Hc-----cHHHHHHHHHHh--ccccceecc-chhhh-hhh
Q 040870 3 ENGFKDWKD-LWLPELAGRISMVNSPREVIGTQ----A--AA-----GRIAVQQNLALL--GNQVRLFDR-THYLK-VFG 66 (215)
Q Consensus 3 ~~~p~sW~d-L~dp~~~Gri~~~d~~~~~~~~a----l--~~-----g~~~a~~~L~~l--~~~v~~~~~-~~~~~-~~~ 66 (215)
+..++||.| |++|.+ ||++.|+...-.|.+ + .+ ..+...+.+..+ ..++..+.. .+... .+.
T Consensus 33 ~~~~~~~~d~L~~~~~--~iai~~P~~~P~G~~a~~~l~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~v~ 110 (188)
T PRK03537 33 MLTSDNLLDLLLDPDI--RLGTSTPGADPSGDYAWQLFDRAEALHAGAGEALRTKALQLVGGPNSAPIPAGRNAAEWLIE 110 (188)
T ss_pred CCCccCHHHHhcCCCc--EEEcCCCCCCcchHHHHHHHHHHHhhccCcchHHHHHHHHHhCCCCCCcCCCcchHHHHHHH
Confidence 345678987 668875 799987544333332 1 11 122222222221 234433322 23344 789
Q ss_pred cCcEEEEEechhcHHHHHHcCCCeEEE-ecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 67 IGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
+|++++|+.|..++.....++.++.++ +|.+....-...++++++++ + +|++|+||++|+|.|.-
T Consensus 111 ~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~~~--~------------~A~~F~~fl~s~eaq~i 176 (188)
T PRK03537 111 NKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKDAS--P------------QAKRLADFLLSPKGQAI 176 (188)
T ss_pred CCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecCCh--H------------HHHHHHHHHhCHHHHHH
Confidence 999999999998877654333456654 89988877777889998754 4 89999999999999865
Q ss_pred CCC
Q 040870 146 FNT 148 (215)
Q Consensus 146 ~~~ 148 (215)
+..
T Consensus 177 ~~~ 179 (188)
T PRK03537 177 LAQ 179 (188)
T ss_pred HHH
Confidence 544
No 21
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=98.86 E-value=7.4e-09 Score=89.45 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=80.3
Q ss_pred CCChhhhcCccCCCceeeecChhHHHHHH---H---HccHHHHHHHHHHhccccceeccchhhhhhhcCcEEEEEechhc
Q 040870 6 FKDWKDLWLPELAGRISMVNSPREVIGTQ---A---AAGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSD 79 (215)
Q Consensus 6 p~sW~dL~dp~~~Gri~~~d~~~~~~~~a---l---~~g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~ia~~w~~~ 79 (215)
+++|+||.++ +||+|.|+...-.|.. + .+.++...+.+. ...++ .+..+.+.+|++++++.|..+
T Consensus 127 ~~~~~dLl~~---~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~k~~-~~~~v-----~~~~~~v~~G~ad~gi~~~s~ 197 (257)
T PRK10677 127 KTDWKSLLNG---GRLAVGDPDHVPAGIYAKEALQKLGAWDTLSPKLA-RAEDV-----RGALALVERNEAPLGIVYGSD 197 (257)
T ss_pred ccCHHHhcCC---CeEEEcCCCCChHHHHHHHHHHHcCCHHHHHhhhc-ccccH-----HHHHHHHHcCCCCEEEEEeee
Confidence 5799999874 7999998654444432 1 122332222110 00111 245678899999999999887
Q ss_pred HHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 80 VLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 80 ~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
+.. .++.++..++|+|+...-...++|+++++|+ .|++||||++|+|.|.-+
T Consensus 198 a~~--~~~~~~~~~~P~e~~~~i~~~~avlk~~~~~-------------~Ak~Fi~fl~S~eaq~i~ 249 (257)
T PRK10677 198 AVA--SKKVKVVGTFPEDSHKPVEYPMAIVKGHNNA-------------TVKAFYDYLKGPQAAAIF 249 (257)
T ss_pred eec--cCCCeEEEECCcccCCcceeeEEEEcCCCCH-------------HHHHHHHHHcCHHHHHHH
Confidence 642 3345666778999877777788999998874 699999999999998644
No 22
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=98.82 E-value=5.8e-09 Score=92.56 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=105.9
Q ss_pred CCCCCChhhhcC--ccCCCceeeecChhHHHHH----HH---H-----------------ccHHHHHHHHHHhcccccee
Q 040870 3 ENGFKDWKDLWL--PELAGRISMVNSPREVIGT----QA---A-----------------AGRIAVQQNLALLGNQVRLF 56 (215)
Q Consensus 3 ~~~p~sW~dL~d--p~~~Gri~~~d~~~~~~~~----al---~-----------------~g~~~a~~~L~~l~~~v~~~ 56 (215)
+..|.|.++|+- .+..+|++...++...-|- .+ . .+.+..+++|.++.+.+-..
T Consensus 162 ~~~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~d~~~l~~avDpat~~k~~~p~WqYl~~L~~~i~r~ 241 (384)
T COG4134 162 PQVPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTGDAAALQQAVDPATFAKVWAPLWQYLDELHPYIWRT 241 (384)
T ss_pred CCCCcCHHHHHHHHHhCcCccccCCCCCCCccHhHHHHHHHHhcCchHhhcCCCChHHHHhhccHHHHHHHHhhhhhhhc
Confidence 567999999975 6888999998876622221 11 1 13457899999999987666
Q ss_pred c-c-chhhhhhhcCcEEEEEechhcHHHHHHcCC---CeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHH
Q 040870 57 D-R-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIH 131 (215)
Q Consensus 57 ~-~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~---~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 131 (215)
. + .+..+.+..|+..++++|.+.+..++..|. .+++..++.|.+...+.++||++++++. .|.
T Consensus 242 ~kg~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIPaNa~~~A------------~al 309 (384)
T COG4134 242 GKGPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALEKGMVGNGHFMAIPANANAKA------------AAL 309 (384)
T ss_pred CCCHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhccccccCcceEEecCCCCCch------------HHH
Confidence 5 3 367889999999999999888888887763 5888889999999999999999999997 899
Q ss_pred HHHHHHHcHHHhC
Q 040870 132 QWIEFCLQTARAL 144 (215)
Q Consensus 132 ~FInf~lspe~~~ 144 (215)
-||||+||||.|.
T Consensus 310 vl~n~lls~EaQl 322 (384)
T COG4134 310 VLANFLLSPEAQL 322 (384)
T ss_pred HHHHHhcCHHHHH
Confidence 9999999999994
No 23
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=4.2e-07 Score=79.74 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCCCCCChhhhcCccCCCceeeecCh-----hHHH----HHHHH--c-cHHHHHHHHHHhccccceeccc--hhhhhhh-
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSP-----REVI----GTQAA--A-GRIAVQQNLALLGNQVRLFDRT--HYLKVFG- 66 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~-----~~~~----~~al~--~-g~~~a~~~L~~l~~~v~~~~~~--~~~~~~~- 66 (215)
||..+++|+||..|.-+ |..+|+- |..+ +.++. + +..++.++..++-.||.+++++ ...+.|.
T Consensus 141 NPK~I~DW~DL~k~gV~--VItpNPKTSGgARWN~Laawa~a~~~~~gdeaka~~fV~~L~~nvpvld~gaRgAT~tF~q 218 (348)
T COG1613 141 NPKQIRDWDDLVKPGVQ--VITPNPKTSGGARWNYLAAWAYALKTNGGDEAKAKDFVGKLYKNVPVLDTGARGATTTFVQ 218 (348)
T ss_pred CccccCchHHhccCCcE--EEcCCCCCCcchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCccccCCcchhhHHHHh
Confidence 78899999999998653 4445432 2222 11222 2 3456999999999999998764 5566664
Q ss_pred cCcEEEEEechhcHHHHH--HcCCCeEEEecCCCceeeece-EEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 67 IGDVWIAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADL-WAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~--~~~~~v~~v~P~eG~~~~~d~-~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
+|--|+-++|..+++.+. ..+.++++|+|. ..+-.+. +++... +.+ ++|+.+.|++|++|+.||+.|
T Consensus 219 rgiGDVLi~wENEA~la~~e~g~~~feiV~Ps--~si~aEpPVAVVd~--~vd------kkgtr~vAeAyl~yLys~~gQ 288 (348)
T COG1613 219 RGIGDVLIAWENEALLALNELGGDKFEIVTPS--VSILAEPPVAVVDK--NVD------KKGTRKVAEAYLKYLYSPEGQ 288 (348)
T ss_pred cCcccEEEEechHHHHHHHHhCCCCccEECCc--eeeeecCCeEEEee--ecc------ccccHHHHHHHHHHhcChHHH
Confidence 588899999999999883 346789999997 3333443 444433 333 468899999999999999998
Q ss_pred CCCCC
Q 040870 144 LPFNT 148 (215)
Q Consensus 144 ~~~~~ 148 (215)
.-+++
T Consensus 289 ~i~Ak 293 (348)
T COG1613 289 EIAAK 293 (348)
T ss_pred HHHHH
Confidence 54433
No 24
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=4.2e-05 Score=66.41 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHH---HHhccccceecc-chhhhhhhcCcEEEEEechhcH
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNL---ALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSDV 80 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L---~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~ 80 (215)
.+.+|.++.++. .+|+++-|+...-.|... .++.+.+ ..+.+.+..-.+ .+....+.+|++++++.|.+++
T Consensus 123 ~~~~~~~l~~~~-~~~lai~~p~~~P~G~ya----~~~l~~~g~~~~~~~k~v~~~~v~~~l~~V~~G~ad~g~vy~sd~ 197 (258)
T COG0725 123 KIESLEDLLERP-DVRLAIGDPKTVPAGKYA----KEALELLGLWYTLKDKLVLATNVRQALAYVETGEADAGFVYVSDA 197 (258)
T ss_pred CcccHHHHhcCc-CcEEEecCCCCCCchHHH----HHHHHHhchhhhccccEEecCcHHHHHHHHHcCCCCeEEEEEEhh
Confidence 455588888875 457888775433222211 0111111 112222211111 2667789999999999999876
Q ss_pred HHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 81 LPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 81 ~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
.... +..+...+|.+...--...++|+++++|++ .|.+|++|++|++.+.-
T Consensus 198 ~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~------------~A~~f~~fl~s~~a~~i 248 (258)
T COG0725 198 LLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAKNPE------------LAKEFVDFLLSPEAQEI 248 (258)
T ss_pred hccC--CceEEEEcccccCCCeEEEEEEEcCCCCHH------------HHHHHHHHHhCHHHHHH
Confidence 6544 445666778766555677899999999987 89999999999987743
No 25
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=97.87 E-value=5.1e-05 Score=68.13 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=54.1
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeE-EEecCC--------------------------CceeeeceEEEeCCC
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVA-VVVPKS--------------------------GASLWADLWAIPAAS 112 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~-~v~P~e--------------------------G~~~~~d~~~I~k~a 112 (215)
+....+.+|++|+|+.|..++... .+. +.+|.+ ...-....++|++++
T Consensus 213 ~~~~~v~~G~aDagivy~S~a~~~-----~~~~i~lP~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~s 287 (334)
T PRK04168 213 ELLSLLETGNMDYAFIYKSVAVQH-----NLKYIELPDEINLGNYKYADFYKKVSVTVTGTGKTITAKPIVYGITVPKNA 287 (334)
T ss_pred hhHHHHhcCCccEEEEEeeehhhC-----CCCeeECchhhcCCChhhhhhhhEEEEEecCCCccccCceeeeeeeeecCC
Confidence 567889999999999999987632 222 224442 112255678999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 113 RLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 113 ~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+|++ +|.+|++|++|++.|..+..
T Consensus 288 ~n~e------------~A~~Fi~fl~S~e~q~il~~ 311 (334)
T PRK04168 288 PNRE------------AAIEFLKYLLSEPGGEVLEN 311 (334)
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 9998 89999999999999876644
No 26
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.79 E-value=7.9e-05 Score=64.10 Aligned_cols=141 Identities=19% Similarity=0.214 Sum_probs=89.2
Q ss_pred CCCCCCChhhhcCccCCCceeeecC-----hhHHHHHHH-------HccHHHHHHHHHHhccccceeccc--hhh-hhhh
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNS-----PREVIGTQA-------AAGRIAVQQNLALLGNQVRLFDRT--HYL-KVFG 66 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~-----~~~~~~~al-------~~g~~~a~~~L~~l~~~v~~~~~~--~~~-~~~~ 66 (215)
||..+++|+||.....+ +.++++ .|..+-++. .++..+..+++.++-.||.+|+.. ... .-+.
T Consensus 135 NPK~IkdW~DLvRdDVk--~iFPNPKTSGNaRYTYLAA~~~a~~af~gD~~k~~ef~~k~~~Nv~VFDTGGRgATTtFve 212 (341)
T COG4150 135 NPKNIKDWDDLVRDDVK--LIFPNPKTSGNARYTYLAAWGAADEAFGGDKAKTEEFMTKFLKNVEVFDTGGRGATTTFVE 212 (341)
T ss_pred CcccCccHHHHhhhcce--EecCCCCCCCchhhhHHHHHHHHHHhhcCcHHHHHHHHHHHhcCCceeccCCccccchhhh
Confidence 78899999999976543 555553 232322221 144567899999999999999763 233 3456
Q ss_pred cCcEEEEEechhcHHHHHHc-C-CCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 67 IGDVWIAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~~~-~-~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
.|--++-+++.+.+...+++ | ..++.|+|+- +++---..++.. ++.+ +||+-++|..++||+.||+.|.
T Consensus 213 RglGDVLItFEsE~~~irkqyg~d~~evVvP~~-siLAEFPVa~Vd--kvv~------k~Gt~~~AkaYl~~LYsp~~Q~ 283 (341)
T COG4150 213 RGLGDVLITFESEVNNIRKQYGADKFEVVVPKT-SILAEFPVAWVD--KVVD------KNGTEKAAKAYLNYLYSPQAQT 283 (341)
T ss_pred hccccEEEEeehhhccHHHHhCcccceEeccch-hhhhhcchhHHh--hhhh------hcccHHHHHHHHHHhcCcHHHH
Confidence 66666777777777655544 3 4699999973 222111111111 2223 4677789999999999999884
Q ss_pred ---CCCCCCCCh
Q 040870 145 ---PFNTRVKLP 153 (215)
Q Consensus 145 ---~~~~~~~~~ 153 (215)
.|..++.-+
T Consensus 284 i~a~~~~RV~d~ 295 (341)
T COG4150 284 IIAEFYYRVHDP 295 (341)
T ss_pred HHHHhccccCCH
Confidence 444444433
No 27
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=97.55 E-value=0.00022 Score=60.77 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=53.3
Q ss_pred chhhhhhhcCcEEEEEechhcH---------HHH--H--HcCCCeEEE-ecCC--Cc--eeeeceEEEeCCCCCcccccC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDV---------LPA--V--KRMSNVAVV-VPKS--GA--SLWADLWAIPAASRLETKQIG 120 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~---------~~~--~--~~~~~v~~v-~P~e--G~--~~~~d~~~I~k~a~~~~~~~~ 120 (215)
....+.|.+|++.+.+.++... ... . ....++.+. +|.. |. ....++++|+++++|++
T Consensus 224 ~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~sk~~e---- 299 (315)
T PF01547_consen 224 DQAQQAFASGKVAMIIDGSWYALNWMKVEPQSAFNQNSPPVKFDWGFAPFPAGPGGGPPIGGGDGIAISKNSKNPE---- 299 (315)
T ss_dssp HHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTTTTEEEECEEBETTEETCSEEEEEEEEBTTSSTHH----
T ss_pred HHHHHHHhCCCceEEEeccccccccccccccccccccccccccccceeccCccCCCCCccccceEEEEECCCCCHH----
Confidence 3566889999999999988762 111 1 123356655 3432 11 15788899999999998
Q ss_pred CCCCCChHHHHHHHHHHHcHHHh
Q 040870 121 GRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 121 ~~~~~~~~~A~~FInf~lspe~~ 143 (215)
+|.+||+||+|++.|
T Consensus 300 --------~A~~fl~~l~s~e~Q 314 (315)
T PF01547_consen 300 --------AAWKFLDFLTSPEGQ 314 (315)
T ss_dssp --------HHHHHHHHHTSHHHH
T ss_pred --------HHHHHHHHhCChhhC
Confidence 899999999999987
No 28
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=97.53 E-value=0.00038 Score=62.59 Aligned_cols=96 Identities=21% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHHHHhccc-ccee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-C----ceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-G----~~~~~d~~~I~k~ 111 (215)
++.+++.++.++ +..- +.+...+.|.+|++.+.++.+.........+.++.++ +|.. | ......+++|+++
T Consensus 216 ~a~~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~ 295 (396)
T PRK09474 216 AGLQFLVDLVKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSGINYGVTVLPTFNGKPSKPFVGVLSAGINAA 295 (396)
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHhcCCeeEEEcCCcchHHHHhcCCceEEEeCCCCCCCCCCceeeeeEEEEeCC
Confidence 456666666543 2111 1123457899999999887554444444455667765 5642 2 2344567889999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++|+.+..+..
T Consensus 296 s~~~e------------aA~~fi~~~l~s~~~~~~~~~ 321 (396)
T PRK09474 296 SPNKE------------LAKEFLENYLLTDEGLETVNK 321 (396)
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 99998 8999995 9999999876654
No 29
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=97.15 E-value=0.00083 Score=58.79 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=44.7
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHH------------------cCCCeEEEecC-----CCceeeeceEEEeCCCCCcc
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVK------------------RMSNVAVVVPK-----SGASLWADLWAIPAASRLET 116 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~------------------~~~~v~~v~P~-----eG~~~~~d~~~I~k~a~~~~ 116 (215)
+....+.+|++|+|+.|.+++..... .-..+.++.+- .|.+ -....+|+++++|++
T Consensus 186 ~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y~~v~~~~~~~~~~~~~~p-i~y~~ai~~~~~~~~ 264 (273)
T TIGR03730 186 ELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFYKKVSVELGGGKKTITGKP-IVYGITVPKNAPNRE 264 (273)
T ss_pred hHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhcccceEEEEecCCCceEecCC-EEEEEeccCCCCCHH
Confidence 56788999999999999887653200 00223444321 1233 346788999999998
Q ss_pred cccCCCCCCChHHHHHHHHHH
Q 040870 117 KQIGGRVRGPFPLIHQWIEFC 137 (215)
Q Consensus 117 ~~~~~~~~~~~~~A~~FInf~ 137 (215)
+|.+|++|+
T Consensus 265 ------------~a~~F~~fl 273 (273)
T TIGR03730 265 ------------EAIEFLKFL 273 (273)
T ss_pred ------------HHHHHHhhC
Confidence 899999995
No 30
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=97.08 E-value=0.002 Score=54.10 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=88.3
Q ss_pred CCCCCCChhhhcCccCCCceeeecChh--HHHHHHHH---ccHHHHHHHHHHhccccceecc--chhhhhhhc-CcEEEE
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSPR--EVIGTQAA---AGRIAVQQNLALLGNQVRLFDR--THYLKVFGI-GDVWIA 73 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~--~~~~~al~---~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~-Gev~ia 73 (215)
||..+++++||+.|.- +|.+.|... .+.|..+. .|...-.+.+..++.|+..|.. ....+.|.+ -++|+=
T Consensus 111 NPknIk~~eDll~~gi--~ivV~dGaG~sntsgtgvwED~agr~~~ie~v~afR~NI~~fapnSgaArkaf~~~~~aDaw 188 (252)
T COG4588 111 NPKNIKGFEDLLKPGI--GIVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAAFRKNIVAFAPNSGAARKAFENQPDADAW 188 (252)
T ss_pred CccccccHHHHhcCCc--eEEEeCCCcccCCCCceehHhhhcccccHHHHHHHHhceEEEccCCchHHHHHhcCCCCceE
Confidence 7888999999999864 466666432 12233332 2333335788899999999944 456788877 688888
Q ss_pred EechhcHHHHHHcCCCeEEEecCC-CceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 74 VGWSSDVLPAVKRMSNVAVVVPKS-GASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 74 ~~w~~~~~~~~~~~~~v~~v~P~e-G~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
++|..-. ..++++.-+++.| -..+|-|.-++++.-.+++ |..|++|+.|-|.|.-|
T Consensus 189 ItW~dWa----~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~e-------------a~~F~dyl~S~EAq~if 245 (252)
T COG4588 189 ITWADWA----KSNPDIGDAVEIEKDYVIYRDFNVALAKDANKE-------------ARDFADYLQSDEAQKIF 245 (252)
T ss_pred EEecchh----hhCCchhceeecccceEEeeecceeecCCCCHH-------------HHHHHHHHhhHHHHHHH
Confidence 9996533 3456665555544 5677888877787767775 99999999999988544
No 31
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=97.06 E-value=0.0028 Score=57.73 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHc----CCCeEEE-ecC--CC----ceeeeceEEEeCCCCCcccccCCCCCCChH
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKR----MSNVAVV-VPK--SG----ASLWADLWAIPAASRLETKQIGGRVRGPFP 128 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~----~~~v~~v-~P~--eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 128 (215)
+..+.|.+|++.+.+..+-..-..... +.++.++ +|. +| +..+..+++|+++++|++
T Consensus 269 ~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~v~~~s~~~~------------ 336 (437)
T TIGR03850 269 KNQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTALPAVKEGGDRYSYTFFEQMWIPAAAKNKD------------ 336 (437)
T ss_pred HHHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeeeCCccCCCCCcccccCcceeEEECCCCCHH------------
Confidence 345789999988766543322222222 2245543 463 22 234667899999999998
Q ss_pred HHHHHHHHHHcHHHhCCC
Q 040870 129 LIHQWIEFCLQTARALPF 146 (215)
Q Consensus 129 ~A~~FInf~lspe~~~~~ 146 (215)
+|.+||+|+.+++.+..+
T Consensus 337 aA~~Fi~~l~s~e~~~~~ 354 (437)
T TIGR03850 337 LAKEFIAFLYSDEAAKIF 354 (437)
T ss_pred HHHHHHHHHhCHHHHHHH
Confidence 899999999999987543
No 32
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=96.80 E-value=0.0035 Score=57.57 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=53.0
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcC---CCeEEE-ecC-CCc-----e-ee---eceEEEeCCCCCcccccCCCCCC
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRM---SNVAVV-VPK-SGA-----S-LW---ADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~---~~v~~v-~P~-eG~-----~-~~---~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
+..+.|.+|++.+.+..+-......... .++.++ +|. .|. . ++ ..+++|+++++|++
T Consensus 272 ~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~~~~~~~~~g~~~~I~~~s~~~~--------- 342 (450)
T TIGR03851 272 QSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAPTPSLTASDKLPYGALHAAAGEPFIVPAKAKNPA--------- 342 (450)
T ss_pred HHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeeecCCCCCcccCCcccccccCCceeEEECCCCCHH---------
Confidence 4567899999888765432222222222 233332 453 111 1 11 46789999999998
Q ss_pred ChHHHHHHHHHHHcHHHhCCCCCCCCChh
Q 040870 126 PFPLIHQWIEFCLQTARALPFNTRVKLPE 154 (215)
Q Consensus 126 ~~~~A~~FInf~lspe~~~~~~~~~~~~~ 154 (215)
+|.+||+|+.+++.+..+....+..+
T Consensus 343 ---aA~~fl~~l~s~e~~~~~~~~~g~ip 368 (450)
T TIGR03851 343 ---GGLEYLRIMLSKEGAANFTELTKSLT 368 (450)
T ss_pred ---HHHHHHHHHhCHHHHHHHHHhcCCCc
Confidence 89999999999999987765444433
No 33
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=96.13 E-value=0.0054 Score=57.52 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=55.4
Q ss_pred ccchhhhhhhcCcEEEEEechhcHHHHHHcC--------------CCeEEEecCCCceeeeceEEEeCCCCCcccccCCC
Q 040870 57 DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRM--------------SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 122 (215)
Q Consensus 57 ~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~--------------~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~ 122 (215)
+++..++.+++|+.+.|++|+||+..+...| .++.++=|+. ++...|+++|.|-+++.++
T Consensus 251 dS~~lln~la~~~~~~aimYNGDalyA~~gGd~~~E~~~~~~~~~~nf~~vr~~~-tl~~LD~iVinK~~~e~ed----- 324 (493)
T PF02030_consen 251 DSNDLLNNLANGQFDGAIMYNGDALYAANGGDYFEEKDENKLPDSNNFHIVRPKN-TLSLLDFIVINKISSENED----- 324 (493)
T ss_pred ChHHHHHHHhccccceEEEEccHHHHHhcCCCcccccccccCCCCCceeeeccCC-CceehhhhhhcccCHHHHH-----
Confidence 3457889999999999999999999885322 3577777864 7888998888874444442
Q ss_pred CCCChHHHHHHHHHHHc
Q 040870 123 VRGPFPLIHQWIEFCLQ 139 (215)
Q Consensus 123 ~~~~~~~A~~FInf~ls 139 (215)
.||+||++++-
T Consensus 325 ------~AYe~I~~l~~ 335 (493)
T PF02030_consen 325 ------KAYEFINKLAF 335 (493)
T ss_pred ------HHHHHHHHHHH
Confidence 89999999984
No 34
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=95.84 E-value=0.023 Score=50.56 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred chhhh-hhhcCcEEEEEechhcHHHHHHcCC---CeEEE-ecCC----C--ceeeeceEEEeCCCCC-cccccCCCCCCC
Q 040870 59 THYLK-VFGIGDVWIAVGWSSDVLPAVKRMS---NVAVV-VPKS----G--ASLWADLWAIPAASRL-ETKQIGGRVRGP 126 (215)
Q Consensus 59 ~~~~~-~~~~Gev~ia~~w~~~~~~~~~~~~---~v~~v-~P~e----G--~~~~~d~~~I~k~a~~-~~~~~~~~~~~~ 126 (215)
.+..+ .|.+|++.+.+.+............ ++.+. +|.. + ......+++|++.+++ ++
T Consensus 256 ~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------- 325 (433)
T COG1653 256 DDAGALAFGSGKVAMTIDGTWAIGYFKKAAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSKKSKKHKE---------- 325 (433)
T ss_pred hhhhhHHHhcCceeeEeeccchhcccccccccccceeEEeCCCCCCCCCcceeeccceEEeecCCccchH----------
Confidence 35566 5999999999888766655544432 35555 4531 2 2344456888998888 44
Q ss_pred hHHHHHHHHHHHcHHHhCC-CCCCCCC
Q 040870 127 FPLIHQWIEFCLQTARALP-FNTRVKL 152 (215)
Q Consensus 127 ~~~A~~FInf~lspe~~~~-~~~~~~~ 152 (215)
+|.+||+|+.+|+.|.. +....+.
T Consensus 326 --aA~~f~~~l~s~e~q~~~~~~~~g~ 350 (433)
T COG1653 326 --AAWKFLEFLTSPEAQAELLAKVTGG 350 (433)
T ss_pred --HHHHHHHHhcCCchhhhhhhccCCC
Confidence 89999999999998886 5544443
No 35
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=94.33 E-value=0.071 Score=48.82 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=54.7
Q ss_pred HHHHHHHHhcc-ccceecc--chhhhhhhcCcEEEEEechhcHHHHHHc-CCCeEEE-ecCC----C----ceeeeceEE
Q 040870 41 AVQQNLALLGN-QVRLFDR--THYLKVFGIGDVWIAVGWSSDVLPAVKR-MSNVAVV-VPKS----G----ASLWADLWA 107 (215)
Q Consensus 41 ~a~~~L~~l~~-~v~~~~~--~~~~~~~~~Gev~ia~~w~~~~~~~~~~-~~~v~~v-~P~e----G----~~~~~d~~~ 107 (215)
++.+++.++.. ....+.+ ++..+.|.+|++.+.+.++......... +.++.+. +|.. | +.....++.
T Consensus 233 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~a~~~~gsw~~~~~~~~~~~~~~v~~~P~~~~~~g~~~~~~~gg~~~~ 312 (438)
T PRK10974 233 KHIALLEEMNKKGDFTYVGRKDESTEKFYNGDCAITTASSGSLANIRKYAKFNYGVGMMPYDADVKGAPQNAIIGGASLW 312 (438)
T ss_pred HHHHHHHHHHHCCCcccCCCcchHhhHhhcCcceEEecChHHHHHHHhcCCceeeEEeeccCCCcCCCCCCCCCCCceEE
Confidence 34455555532 2222211 2456789999998888877655444332 2244443 4531 2 223334455
Q ss_pred EeCC--CCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 108 IPAA--SRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 108 I~k~--a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
|++. +.|++ +|.+||+|+.+++.+..+..
T Consensus 313 ~~~~~~~~~~e------------aA~~fi~fl~s~e~~~~~~~ 343 (438)
T PRK10974 313 VMQGKDKETYK------------GVAKFLDFLAKPENAAEWHQ 343 (438)
T ss_pred EECCCCHHHHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 5553 23444 89999999999999866543
No 36
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=88.89 E-value=5.6 Score=34.66 Aligned_cols=82 Identities=5% Similarity=0.037 Sum_probs=55.7
Q ss_pred cccee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHH
Q 040870 52 QVRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPL 129 (215)
Q Consensus 52 ~v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 129 (215)
++... ...+....|.+|++++++.|...+..+..+...=.+++-.... -+.+.+++.+.-.|++ .
T Consensus 176 ~v~~v~~~~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~~-~~~~~~~v~~~~~~~~------------~ 242 (271)
T PRK11063 176 NLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKDS-PYVNLIVAREDNKDAE------------N 242 (271)
T ss_pred CCEEEECcHHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCCC-CeEEEEEECCcccCCH------------H
Confidence 45554 3346678899999999999988877765332111233322222 3567777777766666 8
Q ss_pred HHHHHHHHHcHHHhCCC
Q 040870 130 IHQWIEFCLQTARALPF 146 (215)
Q Consensus 130 A~~FInf~lspe~~~~~ 146 (215)
.+++++-+.|+++...+
T Consensus 243 ~~~l~~a~~s~~v~~~i 259 (271)
T PRK11063 243 VKKFVQAYQSDEVYEAA 259 (271)
T ss_pred HHHHHHHHcCHHHHHHH
Confidence 99999999999987544
No 37
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=86.33 E-value=3.2 Score=34.30 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=57.2
Q ss_pred CCCCCCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHH-HHHh--c-cccceecc-----chhhhhhhcCcEEE
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQN-LALL--G-NQVRLFDR-----THYLKVFGIGDVWI 72 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~-L~~l--~-~~v~~~~~-----~~~~~~~~~Gev~i 72 (215)
||..++||+||.++. +.+.+-.. .-|.. ..++. |.+. . ..+..|.. ......+++|.+|+
T Consensus 79 np~~i~~~~dL~~~~----~r~vnR~~-GSGtR------~l~d~~l~~~gi~~~~i~gy~~~~~th~~vA~aVa~G~AD~ 147 (193)
T PF12727_consen 79 NPKGITSLEDLADPG----LRFVNRQP-GSGTR------ILFDQLLAEEGIDPEDIPGYAQEANTHLAVAAAVASGKADA 147 (193)
T ss_pred CCccCCCHHHhccCC----cEEEECCC-CCHHH------HHHHHHHHHcCCChhhCCCccccccChHHHHHHHHcCCCCE
Confidence 566789999996554 33554332 11111 11111 2111 1 23444422 25678899999999
Q ss_pred EEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHH
Q 040870 73 AVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFC 137 (215)
Q Consensus 73 a~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~ 137 (215)
|++....+. +-..+.|+==.+ -.-.++|++..-..+ ..++||+|+
T Consensus 148 G~g~~~~A~----~~~gL~Fvpl~~----E~~dlv~~~~~~~~~------------~vq~ll~~l 192 (193)
T PF12727_consen 148 GIGIRAAAE----EFYGLDFVPLAE----ERYDLVIRREDLEDP------------AVQALLDFL 192 (193)
T ss_pred EeehHHHHH----hhcCCCcEEccc----cceEEEEEhhHcCCH------------HHHHHHHHh
Confidence 997533221 112455542111 223456777776554 799999986
No 38
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=85.73 E-value=11 Score=32.69 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=50.5
Q ss_pred ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 040870 57 DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 57 ~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
...+....|.+|++++++.|......+...-..=...+..... -+.+.+++.++-.+.+ ..++|+.-
T Consensus 170 ~~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~~-~~~n~l~~r~~~~~~~------------~~~~lv~~ 236 (258)
T TIGR00363 170 ETSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKDS-PYVNIIVSREDNKDAE------------NVKDFIQS 236 (258)
T ss_pred CHHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCCC-CeeEEEEEcCCccCCH------------HHHHHHHH
Confidence 3346678899999999999998777764331111122221112 2446667666655554 89999999
Q ss_pred HHcHHHhCCC
Q 040870 137 CLQTARALPF 146 (215)
Q Consensus 137 ~lspe~~~~~ 146 (215)
+-|++++..+
T Consensus 237 ~~s~~v~~~i 246 (258)
T TIGR00363 237 YQSEEVYQAA 246 (258)
T ss_pred HcCHHHHHHH
Confidence 9999987544
No 39
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=84.22 E-value=15 Score=32.10 Aligned_cols=127 Identities=7% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHH-H--Hcc---------HHHHHHHHHHhcccccee--ccchhhhhhhcCc
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQ-A--AAG---------RIAVQQNLALLGNQVRLF--DRTHYLKVFGIGD 69 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-l--~~g---------~~~a~~~L~~l~~~v~~~--~~~~~~~~~~~Ge 69 (215)
.+.+|.+||=+. .+|++++++...--.. + ..| .....+-..+-..++... ...+....+.+|+
T Consensus 120 ~~iksl~DL~~G---a~IAipnd~~n~~ral~lL~~agli~l~~~~g~~~t~~di~~np~~l~~ve~~~~q~~~al~dg~ 196 (272)
T PRK09861 120 KKIKTVAQIKEG---ATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196 (272)
T ss_pred cCCCCHHHcCCC---CEEEEeCCCccHHHHHHHHHHCCCEEEcCCCCCCCCHhHHhcCCCCCEEEEcCHHHhHhhccCcc
Confidence 357788887322 3899997664322221 1 111 111111122222345443 3346778899999
Q ss_pred EEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 70 VWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 70 v~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
+++++.|...+..+-.+...=....... ..-+...+++..+-.+.+ ..++|+..+-|+|+...+
T Consensus 197 vD~a~i~~~~~~~ag~~~~~~~l~~e~~-~~~~~n~~~~r~~~~~~~------------~~~~lv~~~~s~~v~~~i 260 (272)
T PRK09861 197 VDVAIISTTYIQQTGLSPVHDSVFIEDK-NSPYVNILVAREDNKNAE------------NVKEFLQSYQSPEVAKAA 260 (272)
T ss_pred cCEEEEchhHHHHcCCCcccceeEEcCC-CCCeEEEEEEcCCccCCH------------HHHHHHHHHcCHHHHHHH
Confidence 9999999887765332211111222111 112445555555444443 899999999999986544
No 40
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=71.94 E-value=20 Score=29.70 Aligned_cols=51 Identities=22% Similarity=0.008 Sum_probs=34.8
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCC----CeEEEecCCCceeeeceEEEeCC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMS----NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~----~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
.+..+++.+|++++++.+......+..+++ ++.++...+.. ...++++.++
T Consensus 184 ~~~~~al~~G~~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 238 (254)
T TIGR01098 184 DASALAVANGKVDAATNNSSAIGRLKKRGPSDMKKVRVIWKSPLI--PNDPIAVRKD 238 (254)
T ss_pred HHHHHHHHcCCCCeEEecHHHHHHHHHhCccchhheEEEEecCCC--CCCCEEEECC
Confidence 456789999999999999887776666653 46666644332 2345666555
No 41
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=66.98 E-value=20 Score=27.57 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=47.3
Q ss_pred eecc-chhhhhhhcCcEEEEEechhcHHHHHHcC-CCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHH
Q 040870 55 LFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRM-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQ 132 (215)
Q Consensus 55 ~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~-~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~ 132 (215)
.+.+ ++..+++.+|++++++.+...+.....+. .++.++.+. .......+++.....+++ +..+
T Consensus 131 ~~~~~~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~------------l~~~ 196 (218)
T cd00134 131 SYDDNAEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPS--IDLEPLGFGVAVGKDNKE------------LLDA 196 (218)
T ss_pred EeCCHHHHHHHHHcCCccEEEeccHHHHHHHHhcCCCcEEeccc--cCCCccceEEEEcCCCHH------------HHHH
Confidence 3434 46788999999999999988777665554 456655443 122344556666666655 7888
Q ss_pred HHHHHHc
Q 040870 133 WIEFCLQ 139 (215)
Q Consensus 133 FInf~ls 139 (215)
|-+++.+
T Consensus 197 ~~~~l~~ 203 (218)
T cd00134 197 VNKALKE 203 (218)
T ss_pred HHHHHHH
Confidence 8887773
No 42
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=64.10 E-value=25 Score=30.00 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCCCCCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHHHHhccccceecc-----chhhhhhhcCcEEEEEec
Q 040870 2 NENGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDR-----THYLKVFGIGDVWIAVGW 76 (215)
Q Consensus 2 ~~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~v~~~~~-----~~~~~~~~~Gev~ia~~w 76 (215)
||..++||+||.+... .+.|-.+. .|.-.. +|.....+..+...+..|.. +.....+++|.+|+|++-
T Consensus 85 npk~i~~~edl~~~d~----~fVNR~rG-SGTR~L--lD~~L~~~~~~~~~I~GY~~e~~th~avA~aVa~G~AD~GvGl 157 (223)
T COG1910 85 NPKNISSLEDLLRKDL----RFVNRNRG-SGTRIL--LDELLGELNILPDSIKGYSDEATTHDAVASAVASGRADAGVGL 157 (223)
T ss_pred CCCccccHHHHhhcCc----EEEecCCC-ccHHHH--HHHHHHHcCcCchhcCCccccccccHHHHHHHHcCCCCccccH
Confidence 4566799999988753 36665542 111111 11111223344456777743 235678999999999882
Q ss_pred hhcHHHHHHcCCCeEEEec-CCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 77 SSDVLPAVKRMSNVAVVVP-KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 77 ~~~~~~~~~~~~~v~~v~P-~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
+..++.-.+.|+=- +| - .-++|.++--.++ .-++||.-+-|.+....+.
T Consensus 158 -----r~~A~~~gL~Fipl~~E----~-YD~virke~~~~~------------~vr~fi~~L~s~~~~~~l~ 207 (223)
T COG1910 158 -----RHAAEKYGLDFIPLGDE----E-YDFVIRKERLDKP------------VVRAFIKALKSEGFAANLP 207 (223)
T ss_pred -----HHHHHHcCCceEEcccc----e-EEEEEehhHccCH------------HHHHHHHHhccccccccCc
Confidence 22222234666522 22 1 2345666544544 7899999888844444443
No 43
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=62.99 E-value=54 Score=24.92 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=35.8
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcC--CCeEEEecCCCceeeeceEEEeCCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~--~~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
++..+.+ .+...++.+|++++++.+..........+ ..+.++ +........-.+++.++.
T Consensus 129 ~~~~~~~~~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 191 (219)
T smart00062 129 KIVSYDSQAEALAALKAGRADAAVADAPALAALVKQHGLPELKIV-GDPLDTPEGYAFAVRKGD 191 (219)
T ss_pred eEEEcCCHHHHHHHhhcCcccEEEeccHHHHHHHHhcCCCceeec-cCCCCCCcceEEEEECCC
Confidence 3434433 45678999999999999988776665544 345443 322222133445555553
No 44
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=60.72 E-value=16 Score=34.12 Aligned_cols=94 Identities=13% Similarity=0.107 Sum_probs=58.2
Q ss_pred HHHHHHHHhccc-cceeccc--hhhhhhhcCcEEEEEe--chhcHHHHHHcCCCeEEE-ecCCC------ceeeeceEEE
Q 040870 41 AVQQNLALLGNQ-VRLFDRT--HYLKVFGIGDVWIAVG--WSSDVLPAVKRMSNVAVV-VPKSG------ASLWADLWAI 108 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~~~~~--~~~~~~~~Gev~ia~~--w~~~~~~~~~~~~~v~~v-~P~eG------~~~~~d~~~I 108 (215)
.+..++...... +.--..+ -...+|..|+..+.+. |+-+... ..+.++.+. +|+=. ..+-+-+++|
T Consensus 231 ~g~~~~~~~~~~g~~~~~~~~~~~~slF~~G~aa~~i~GPW~~~~~~--~~g~n~GvaplP~~~~g~~~~pf~Gv~~~~V 308 (420)
T COG2182 231 EGANFLKSWYKKGLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYK--DAGINYGVAPLPTLNNGKKPKPFSGVKGYVV 308 (420)
T ss_pred HHHHHHHHHHHcCCCCcccccHHHHHHHhcCCceEEecCCCccchhh--hcCcccceeecCCCCCCCCcCCcccceEEEe
Confidence 455666655433 1111112 2567899999655544 4433333 445565444 44321 2334567889
Q ss_pred eCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 109 PAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 109 ~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
++.++|++ +|.+|+.|+..++.+..+..
T Consensus 309 sa~skn~~------------~A~~f~~~~t~~~~~~~~~~ 336 (420)
T COG2182 309 SAASKNKE------------AAAKFVKYFTNPKNQKLLYD 336 (420)
T ss_pred cCCCCcHH------------HHHHHHHHhhhHHHHHHHHH
Confidence 99999998 99999999999998876433
No 45
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=58.25 E-value=17 Score=31.51 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=36.3
Q ss_pred CCeEEEecCCCceeeeceEEEe--CCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 88 SNVAVVVPKSGASLWADLWAIP--AASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 88 ~~v~~v~P~eG~~~~~d~~~I~--k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+.+.+++-.+-..+.+.++.+. +..++.. ...|.+||+|+++++.|.-++.
T Consensus 208 ~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vn----------y~~A~kfi~w~~s~~gq~~Ia~ 260 (280)
T COG2998 208 PTLVIVLEGDPSLFNPYSVIAVNPKRVKGVN----------YTAATKFIEWLMSEKGQNLIAE 260 (280)
T ss_pred cceEEEecCCccccCceeEEEEchhcCCCcC----------chHHHHHHHHHhhHHHHHHHhh
Confidence 5677777666677777777664 5555533 3489999999999998855443
No 46
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=54.23 E-value=32 Score=28.82 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=61.2
Q ss_pred CCCCChhhhcCccC--CCc-eeeec--ChhHHHHH-HH-HccHHHHHHHHHHhccccc--eeccchhhhhhhcCcEEEEE
Q 040870 4 NGFKDWKDLWLPEL--AGR-ISMVN--SPREVIGT-QA-AAGRIAVQQNLALLGNQVR--LFDRTHYLKVFGIGDVWIAV 74 (215)
Q Consensus 4 ~~p~sW~dL~dp~~--~Gr-i~~~d--~~~~~~~~-al-~~g~~~a~~~L~~l~~~v~--~~~~~~~~~~~~~Gev~ia~ 74 (215)
..++||+||+.... +|+ |++.. +..+++.. .+ ..|++. ...|. .+...+..++|.+|+++.++
T Consensus 104 ~~~~~~~dl~~~~~~~kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~--------~~dv~~~~~~~~~~~~al~~g~iDa~~ 175 (252)
T PF13379_consen 104 SDIKSLADLIKKRKAQKGKKIAVPFPGSTHDMLLRYLLKKAGLDP--------KDDVTLVNVPPPEMVAALRAGEIDAAV 175 (252)
T ss_dssp STTCCGHHHHHTCCSCSTEEEEESSTTSHHHHHHHHHHHHTT--T--------TTSSEEEE--GHHHHHHHHTTS-SEEE
T ss_pred CCccCHHHHHhhhcccCCcEEEEcCCCCHHHHHHHHHHHhCCCCc--------ccceEEEecCHHHHHHHHhCCCcCEEE
Confidence 56899999976432 674 45432 22222211 22 234432 22333 34446788999999999999
Q ss_pred echhcHHHHHHcCCCeEEEecCCCceeee---ceE-EEeCC--CCCcccccCCCCCCChHHHHHHHHHHHcH
Q 040870 75 GWSSDVLPAVKRMSNVAVVVPKSGASLWA---DLW-AIPAA--SRLETKQIGGRVRGPFPLIHQWIEFCLQT 140 (215)
Q Consensus 75 ~w~~~~~~~~~~~~~v~~v~P~eG~~~~~---d~~-~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf~lsp 140 (215)
.|......+..++.-..+.... .+|. .++ +..++ ..|++ .+.+|++-+.+.
T Consensus 176 ~~eP~~~~~~~~g~g~~v~~~~---~~~~~~p~~~~~~~~~~~~~~p~------------~v~~~~~a~~~A 232 (252)
T PF13379_consen 176 LWEPFASQAEAKGIGKIVADSG---DVWGNHPCCVIVARRDFLEENPE------------AVKAFLEALQEA 232 (252)
T ss_dssp EETTHHHHHHHTTS-EEEEEHH---HCSTT-B-EEEEEEHHHHHH-HH------------HHHHHHHHHHHH
T ss_pred ecCCHHHHHHhccCCeEEEEec---cccCCCCeEEEEECHHHHHHCHH------------HHHHHHHHHHHH
Confidence 9999988888776532222221 1232 222 22221 24666 888998866654
No 47
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=52.15 E-value=29 Score=27.95 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=51.3
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCC--cccccCCCCCCChH-
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRL--ETKQIGGRVRGPFP- 128 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~--~~~~~~~~~~~~~~- 128 (215)
+..+.+ .+..+++.+|+++++++....+..++.+|.+++.+..-- ......+++++++.- .. .+-|++=|...
T Consensus 25 ~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~~~l~~~~~s~i~~~~-DLkGK~i~v~~~ 101 (216)
T PF09084_consen 25 IVFFGGGGDVLEALASGKADIAVAGPDAVLFARAKGADIKIIAASY--QSSPNALVVRKDSGIKSPA-DLKGKKIGVSRG 101 (216)
T ss_dssp EEEESSHHHHHHHHHTTSHSEEEEECHHHHHHHHTTSTEEEEEEEE--EECCEEEEEETTTS-SSGG-GGTTSEEEESTT
T ss_pred EEEecChhHHHHHHhcCCceEEeccchHHHHHHhcCCeeEEEEEec--CCCceEEEEeccCCCCCHH-HhCCCEEEEecC
Confidence 334433 467789999999999999888888888999887764210 011233445554332 22 12333322222
Q ss_pred -HHHHHHHHHHcH
Q 040870 129 -LIHQWIEFCLQT 140 (215)
Q Consensus 129 -~A~~FInf~lsp 140 (215)
..+.++..+|..
T Consensus 102 s~~~~~~~~~l~~ 114 (216)
T PF09084_consen 102 SSSEYFLRALLKK 114 (216)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 467788888864
No 48
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=48.74 E-value=58 Score=27.77 Aligned_cols=29 Identities=10% Similarity=0.018 Sum_probs=23.2
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRM 87 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~ 87 (215)
.+..+.+.+|++++++.+...+....+++
T Consensus 178 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~ 206 (288)
T TIGR03431 178 EAAILAVANGTVDAATTNDENLDRMIRKG 206 (288)
T ss_pred HHHHHHHHcCCCCeEeccHHHHHHHHHcC
Confidence 35678899999999999988777766543
No 49
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=45.00 E-value=42 Score=29.04 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=42.1
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCC--CCCcccccCCCCCCChHHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
.+...+|.+|++++++.|......+..++ ...+.+..++.....+.++.... ..|++ ...+|+.-
T Consensus 166 ~~~~~al~~G~vDa~~~~ep~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~v~~~l~a 232 (314)
T PRK11553 166 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQQVLAT 232 (314)
T ss_pred HHHHHHHHcCCCCEEEEcCcHHHHHHhcC-CcEEeecCcccCcCceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 45678999999999999987766665543 34444443332222223333221 35666 78888876
Q ss_pred HHcH
Q 040870 137 CLQT 140 (215)
Q Consensus 137 ~lsp 140 (215)
+...
T Consensus 233 ~~~A 236 (314)
T PRK11553 233 LTEA 236 (314)
T ss_pred HHHH
Confidence 6654
No 50
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=44.31 E-value=96 Score=27.52 Aligned_cols=77 Identities=25% Similarity=0.255 Sum_probs=50.2
Q ss_pred HHHHHHHHHH-hccccceecc---chhhhhhhcCcEEEEEechhcHHHHHHcC---CCeEEEecCCCceeeeceEEEeCC
Q 040870 39 RIAVQQNLAL-LGNQVRLFDR---THYLKVFGIGDVWIAVGWSSDVLPAVKRM---SNVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 39 ~~~a~~~L~~-l~~~v~~~~~---~~~~~~~~~Gev~ia~~w~~~~~~~~~~~---~~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
.+...++|.+ +.-.|..|-. ...++.+..|+++++..-.+....+..+. ..+....=++|+..+...+.+.++
T Consensus 54 ~~pl~~~L~~~lG~~V~~~~a~dy~~vieal~~g~~D~A~~~~~a~~~a~~~~~~~e~~~~~~~~dg~~~Y~S~~i~~~d 133 (299)
T COG3221 54 WAPLADYLEKELGIPVEFFVATDYAAVIEALRAGQVDIAWLGPSAYVEAVDRALAGEPLAQTVQKDGSPGYYSVIIVRAD 133 (299)
T ss_pred HHHHHHHHHHHhCCceEEEecccHHHHHHHHhCCCeeEEecCchhHHHHHhhcccccceeeeeccCCCcceeEEEEEeCC
Confidence 3445566653 4555666633 35679999999998877666555555444 334444346788888888888888
Q ss_pred CCCc
Q 040870 112 SRLE 115 (215)
Q Consensus 112 a~~~ 115 (215)
++-+
T Consensus 134 s~i~ 137 (299)
T COG3221 134 SPIK 137 (299)
T ss_pred CCcc
Confidence 7764
No 51
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=43.26 E-value=43 Score=28.78 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=42.6
Q ss_pred cchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceee----eceEEEeCC--CCCcccccCCCCCCChHHHH
Q 040870 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLW----ADLWAIPAA--SRLETKQIGGRVRGPFPLIH 131 (215)
Q Consensus 58 ~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~----~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~ 131 (215)
..+...+|.+|++++++.|......+.+.+..+. ...+ ...| .+.+++..+ ..|++ .+.
T Consensus 136 ~~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~p~------------~~~ 200 (300)
T TIGR01729 136 PPQIVAAWQRGDIDAAYVWPPALSELLKSGKVIS--DSEQ-VGAWGAPTFDGWVVRKDFAEKNPE------------FVA 200 (300)
T ss_pred cHHHHHHHHcCCcCEEEEecHHHHHHHhcCcEEe--cchh-ccccCCCceeEEEECHHHHHHCHH------------HHH
Confidence 3467789999999999999988777776663221 1111 1112 234443322 13776 899
Q ss_pred HHHHHHHcH
Q 040870 132 QWIEFCLQT 140 (215)
Q Consensus 132 ~FInf~lsp 140 (215)
+|+.-+...
T Consensus 201 ~~~~a~~~a 209 (300)
T TIGR01729 201 AFTKVLADA 209 (300)
T ss_pred HHHHHHHHH
Confidence 999887764
No 52
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=42.56 E-value=26 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=21.9
Q ss_pred eceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 103 ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 103 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
++.++|-++.+.-. ++.+|++|+|+....
T Consensus 6 PsLIGIhaNekeD~------------aTkkFv~Wll~~~~~ 34 (135)
T PF03202_consen 6 PSLIGIHANEKEDK------------ATKKFVNWLLNSKET 34 (135)
T ss_pred CceeeeccCccccH------------HHHHHHHHHHcCccc
Confidence 35677888777644 899999999986443
No 53
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=41.70 E-value=1.5e+02 Score=23.85 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=38.6
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHH-cCCCeEEEe-cC--CCc-eeeeceEEEeCCCCCcccccCCCCCCChHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVK-RMSNVAVVV-PK--SGA-SLWADLWAIPAASRLETKQIGGRVRGPFPLIHQW 133 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~-~~~~v~~v~-P~--eG~-~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~F 133 (215)
.+..+++.+|++++++.+........+ .+.++++.. +. .+. ..+.-+++++++ +.+ ++..|
T Consensus 144 ~~~~~~l~~G~~Da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------l~~~~ 209 (232)
T TIGR03871 144 GRMVEDLAAGEIDVAIVWGPIAGYFAKQAGPPLVVVPLLPEDGGIPFDYRIAMGVRKG--DKA------------WKDEL 209 (232)
T ss_pred HHHHHHHHcCCcCEEEeccHHHHHHHHhCCCCceeeccccCCCCCCccceEEEEEecC--CHH------------HHHHH
Confidence 467789999999999998665543333 333454432 11 111 122335556654 334 77777
Q ss_pred HHHHHc
Q 040870 134 IEFCLQ 139 (215)
Q Consensus 134 Inf~ls 139 (215)
-.++-+
T Consensus 210 n~~l~~ 215 (232)
T TIGR03871 210 NAVLDR 215 (232)
T ss_pred HHHHHH
Confidence 777743
No 54
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=41.31 E-value=1.4e+02 Score=21.85 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=34.3
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
++..|.+ ++....+.+|+ ++.+..........++..++.++-+ ....-..++++++++
T Consensus 47 ~~~~~~~~~~~~~~l~~g~-da~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~ia~~k~~ 105 (134)
T smart00079 47 PSVFVKSYAEGVQRVRVSN-YAFLMESTYLDYELSQNCDLMTVGE--NFGRKGYGIAFPKGS 105 (134)
T ss_pred CCCCCCCHHHHHHHHHcCC-CEEEeehHhHHHHHhCCCCeEEcCc--ccCCCceEEEecCCC
Confidence 4556655 57788999999 9888876666555555444443311 111112367777653
No 55
>COG4521 TauA ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=40.88 E-value=37 Score=29.86 Aligned_cols=79 Identities=20% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHHhccccceeccc-hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCC--Cccccc
Q 040870 43 QQNLALLGNQVRLFDRT-HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR--LETKQI 119 (215)
Q Consensus 43 ~~~L~~l~~~v~~~~~~-~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~--~~~~~~ 119 (215)
.++.....-..|.|++. +...++++|++.||..-|+....+..++-+++..+-. +.+.-.+.+++-+++. .+++-|
T Consensus 51 ~aK~~gatiDWRkFdSG~~vv~AlASGdvqiG~iGSsplaaAaSr~vpie~f~~~-~~ig~sEALVvr~gsgI~kpeDL~ 129 (334)
T COG4521 51 FAKESGATIDWRKFDSGASIVRALASGDVQIGNIGSSPLAAAASRQVPIEVFLLA-SQIGNSEALVVRKGSGIEKPEDLI 129 (334)
T ss_pred hHHhcCCccchhhcCchhHHHHHHhcCCccccccCCchhhHHhhcCCceEEeehh-hhcCccceeeeecCCCcCChHHhc
Confidence 34444444457788774 6788999999999999888888888888888777643 3444556677666433 344334
Q ss_pred CCC
Q 040870 120 GGR 122 (215)
Q Consensus 120 ~~~ 122 (215)
|.|
T Consensus 130 GK~ 132 (334)
T COG4521 130 GKR 132 (334)
T ss_pred cCe
Confidence 443
No 56
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=38.03 E-value=67 Score=26.71 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=40.9
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCcee-e-eceEEEeCC--CCCcccccCCCCCCChHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASL-W-ADLWAIPAA--SRLETKQIGGRVRGPFPLIHQWI 134 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~-~-~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FI 134 (215)
.+..+++.+|++++++.|......+..++. ...++..++... + .+.++..++ ..|++ ++.+|+
T Consensus 138 ~~~~~al~~g~vda~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~ 204 (288)
T TIGR01728 138 SDARAAFAAGQVDAWAIWEPWGSALVEEGG-ARVLANGEGIGLPGQPGFLVVRREFAEAHPE------------QVQRVL 204 (288)
T ss_pred HHHHHHHHCCCCCEEEeccchHhHHhhccC-CEEEEcCCccCCCCcceEEEECHHHHHHCHH------------HHHHHH
Confidence 466789999999999999887766655442 333432222211 1 233443332 34665 788888
Q ss_pred HHHHc
Q 040870 135 EFCLQ 139 (215)
Q Consensus 135 nf~ls 139 (215)
+=+..
T Consensus 205 ~a~~~ 209 (288)
T TIGR01728 205 KVLVK 209 (288)
T ss_pred HHHHH
Confidence 76654
No 57
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=36.14 E-value=1.6e+02 Score=24.25 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=44.4
Q ss_pred HHHHHHHHHHh-cccccee--cc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCCC
Q 040870 39 RIAVQQNLALL-GNQVRLF--DR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 39 ~~~a~~~L~~l-~~~v~~~--~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
+....++|.+. .-.|... .+ .+..+.+.+|++++++.-......+.++.. ++....+..|...+-..+.+.+++
T Consensus 16 ~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~~~ivv~~ds 95 (243)
T PF12974_consen 16 WAPLADYLSKQLGVPVELVPADDYAEFIEALRSGEIDLAFMGPLPYVQARQRAGVEPLATPVGPDGSPSYRSVIVVRADS 95 (243)
T ss_dssp HHHHHHHHHHHHTSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHSSEEEEEEEEETTT-SCEEEEEEEETTS
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHcCCccEEEECcHHHHHHhhcCcEEEEEEecccCCCcceeEEEEEECCC
Confidence 34445666553 3334433 22 467789999999999988777777765532 333334445776676777777777
Q ss_pred CC
Q 040870 113 RL 114 (215)
Q Consensus 113 ~~ 114 (215)
+-
T Consensus 96 ~i 97 (243)
T PF12974_consen 96 PI 97 (243)
T ss_dssp S-
T ss_pred CC
Confidence 54
No 58
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=33.97 E-value=1.3e+02 Score=23.54 Aligned_cols=37 Identities=16% Similarity=0.027 Sum_probs=27.3
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS 88 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~ 88 (215)
++..+.+ .+..+++.+|++++.+.....+.....+..
T Consensus 134 ~~~~~~~~~~~~~~l~~g~~d~~i~~~~~~~~~~~~~~ 171 (225)
T PF00497_consen 134 NIVEVDSPEEALEALLSGRIDAFIVDESTAEYLLKRHP 171 (225)
T ss_dssp EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTT
T ss_pred hhcccccHHHHHHHHhcCCeeeeeccchhhhhhhhhcc
Confidence 3444544 467899999999999998887776665544
No 59
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=33.42 E-value=70 Score=27.41 Aligned_cols=42 Identities=26% Similarity=0.209 Sum_probs=29.8
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV 94 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~ 94 (215)
+..|.+ ....+++.+|++|+++.....+..+..++.++.++.
T Consensus 31 ~~~~~~~~~~~~al~~G~iD~~~~~~~~~~~a~~~g~~~~~v~ 73 (300)
T TIGR01729 31 WRKFDSGADISTALASGNVPIGVIGSSPLAAAASRGVPIELFW 73 (300)
T ss_pred EEecCcHHHHHHHHHcCCCCEeccCCCHHHHHHHCCCCeEEEE
Confidence 334544 356799999999999876666666667787776543
No 60
>PF12849 PBP_like_2: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.; PDB: 1QUL_A 1OIB_A 1A54_A 1IXH_A 1A40_A 1QUJ_A 1A55_A 1IXI_A 2ABH_A 1QUK_A ....
Probab=32.70 E-value=43 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=25.0
Q ss_pred CCCceeeeceEEEeCCCCCc-ccccCCCCCCChHHHHHHHHHHHcHH
Q 040870 96 KSGASLWADLWAIPAASRLE-TKQIGGRVRGPFPLIHQWIEFCLQTA 141 (215)
Q Consensus 96 ~eG~~~~~d~~~I~k~a~~~-~~~~~~~~~~~~~~A~~FInf~lspe 141 (215)
....++.-..+++.+..+.. . +.+.+|++|++|+|
T Consensus 246 ~g~YPl~r~~y~~~~~~~~~~~-----------~~~~~Fl~~~lS~e 281 (281)
T PF12849_consen 246 SGSYPLSRPLYLYTNKDPLQPD-----------PLVRAFLDFVLSEE 281 (281)
T ss_dssp TTSSSCEEEEEEEEESTTSSHH-----------HHHHHHHHHHHSHH
T ss_pred CCCCCeEeEEEEEEECCCCCCc-----------HHHHHHHHHHcCCC
Confidence 34457777777777765522 2 38999999999986
No 61
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=31.67 E-value=1.5e+02 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=24.3
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV 93 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v 93 (215)
.+..+.+.+|++|+++........++..+.++.++
T Consensus 67 ~~~~~aL~~G~iDia~~~~~~~~~~~~~g~~~~~v 101 (314)
T PRK11553 67 PQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYV 101 (314)
T ss_pred HHHHHHHHcCCCCEEccCCHHHHHHHhCCCCEEEE
Confidence 46778999999999987644444455556665554
No 62
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=28.67 E-value=37 Score=19.35 Aligned_cols=11 Identities=0% Similarity=0.419 Sum_probs=9.2
Q ss_pred HHHHHHHHHHc
Q 040870 129 LIHQWIEFCLQ 139 (215)
Q Consensus 129 ~A~~FInf~ls 139 (215)
.|++||+|++.
T Consensus 18 aak~fl~~L~~ 28 (28)
T PF00123_consen 18 AAKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHHhC
Confidence 78999999863
No 63
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=28.57 E-value=1e+02 Score=25.67 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC
Q 040870 45 NLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS 88 (215)
Q Consensus 45 ~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~ 88 (215)
++.+..-. +..|.+ .+..+.|.+|++|++.. ......+...|.
T Consensus 29 ~f~~~G~~ve~~~~~~g~~~~~al~~G~iD~a~~-~~~~~~~~~~g~ 74 (252)
T PF13379_consen 29 LFEKEGLDVEWVQFASGADILEALAAGEIDIAFV-LAPALIAIAKGA 74 (252)
T ss_dssp HHHHTTSCEEEEEESSHHHHHHHHHCTSSSEEEE-CTHHHHHHHTTT
T ss_pred hHHHcCCEEEEEEcCCHHHHHHHHHcCCCCEEEe-chHHHHHHHcCC
Confidence 44444333 445554 46789999999999999 777777777766
No 64
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=28.09 E-value=1.1e+02 Score=27.25 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=42.1
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCce-eeeceEEEeC--CCCCcccccCCCCCCChHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWADLWAIPA--ASRLETKQIGGRVRGPFPLIHQWIE 135 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~-~~~d~~~I~k--~a~~~~~~~~~~~~~~~~~A~~FIn 135 (215)
.+...+|.+|+||++..|......+..++. ...++-.++.+ ...+.++... -..|++ ...+|+.
T Consensus 143 ~d~~aAl~~G~VDAa~~~eP~~s~~~~~~g-~~~l~~~~~~~~~~~~~lv~~~~~l~~~pe------------~v~~~~~ 209 (328)
T TIGR03427 143 ADIVAAFITKDVTAVVTWNPQLSEIKAQPG-ANEVFDSSQIPGEILDLMVVNTQTLKANPN------------LGKALTG 209 (328)
T ss_pred HHHHHHHhcCCCcEEEEcCchHHHHHhCCC-cEEecccccCCCcceEEEEECHHHHHHCHH------------HHHHHHH
Confidence 467789999999999999998777765522 23333222221 1234554433 124666 7888887
Q ss_pred HHHc
Q 040870 136 FCLQ 139 (215)
Q Consensus 136 f~ls 139 (215)
-..+
T Consensus 210 a~~k 213 (328)
T TIGR03427 210 AWYE 213 (328)
T ss_pred HHHH
Confidence 6654
No 65
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=26.56 E-value=1.2e+02 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=25.7
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV 93 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v 93 (215)
....+.+.+|++++++...........++.++..+
T Consensus 40 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~i 74 (288)
T TIGR01728 40 PPALEALGAGSLDFGYIGPGPALFAYAAGADIKAV 74 (288)
T ss_pred cHHHHHHhcCCccccccCCcHHHHHHhcCCCEEEE
Confidence 45678999999999977555555566667676655
No 66
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PubMed:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=22.75 E-value=3.1e+02 Score=23.85 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=20.2
Q ss_pred hhhhhhcCcEEEEEechhcHHHHH
Q 040870 61 YLKVFGIGDVWIAVGWSSDVLPAV 84 (215)
Q Consensus 61 ~~~~~~~Gev~ia~~w~~~~~~~~ 84 (215)
..+++.+|+.++...|+.+.....
T Consensus 164 ~~~A~~~~e~~v~~~w~P~w~~~~ 187 (290)
T TIGR03414 164 VARAVKRKEWVVFLGWEPHPMNTN 187 (290)
T ss_pred HHHHHHCCCCEEEEEecCchhhhc
Confidence 357899999999999999887654
No 67
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=21.74 E-value=4.5e+02 Score=21.44 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=18.2
Q ss_pred chhhhhhhcCcEEEEEechhcHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPA 83 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~ 83 (215)
++..+.+.+|++|+++.-.......
T Consensus 75 ~~~~~~l~~g~~Di~~~~~~~~~~~ 99 (254)
T TIGR01098 75 SAVIEAMRFGRVDIAWFGPSSYVLA 99 (254)
T ss_pred HHHHHHHHcCCccEEEECcHHHHHH
Confidence 3567889999999998655544433
Done!