Query 040870
Match_columns 215
No_of_seqs 154 out of 1589
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 100.0 2.6E-34 8.9E-39 250.9 11.0 190 3-204 128-331 (333)
2 4eqb_A Spermidine/putrescine A 100.0 1.1E-29 3.6E-34 220.8 11.7 190 3-204 125-328 (330)
3 3ttm_A Polyamine transport pro 100.0 1.4E-28 4.9E-33 214.4 11.0 188 5-204 134-346 (346)
4 3ttn_A Polyamine transport pro 99.9 1.9E-27 6.5E-32 206.2 10.1 186 5-202 130-340 (340)
5 1pot_A POTD, spermidine/putres 99.9 1E-26 3.4E-31 201.3 14.0 188 4-204 123-324 (325)
6 2v84_A Spermidine/putrescine A 99.9 4.3E-23 1.5E-27 180.4 9.9 185 4-204 143-343 (343)
7 4i1d_A ABC transporter substra 99.9 1.7E-22 5.9E-27 174.3 13.5 183 5-202 120-322 (324)
8 4euo_A ABC transporter, substr 99.9 3.5E-23 1.2E-27 179.2 7.1 185 5-204 115-314 (320)
9 1a99_A POTF, putrescine-bindin 99.9 3.2E-22 1.1E-26 174.0 8.7 188 5-204 130-343 (344)
10 3rpw_A ABC transporter; struct 99.9 4.4E-22 1.5E-26 174.7 9.3 185 4-202 154-363 (365)
11 3pu5_A Extracellular solute-bi 99.8 8E-21 2.7E-25 164.5 7.8 182 4-204 124-325 (333)
12 3c9h_A ABC transporter, substr 99.7 2.6E-18 9E-23 150.6 9.7 136 5-152 151-299 (355)
13 4edp_A ABC transporter, substr 99.7 6.6E-18 2.2E-22 145.7 11.8 183 4-201 151-349 (351)
14 3e13_X Putative iron-uptake AB 99.7 2E-16 6.8E-21 135.3 12.6 139 4-155 117-275 (322)
15 2qry_A Thiamine-binding peripl 99.7 3.6E-16 1.2E-20 135.7 13.1 135 4-151 139-283 (330)
16 1xvx_A YFUA; periplasmic iron 99.6 4.5E-15 1.5E-19 127.1 13.4 134 5-150 120-266 (312)
17 1q35_A Iron binding protein FB 99.6 2.4E-15 8.1E-20 129.0 11.3 132 5-149 117-265 (320)
18 2voz_A FUTA2, periplasmic iron 99.6 1.5E-15 5.1E-20 131.7 10.1 135 5-152 144-300 (346)
19 1nnf_A Iron-utilization peripl 99.6 7.1E-15 2.4E-19 125.5 13.5 136 4-151 116-263 (309)
20 3cg1_A UPF0100 protein PF0080; 99.6 4E-15 1.4E-19 127.5 9.3 130 5-148 109-290 (296)
21 2pt1_A Iron transport protein; 99.6 6E-15 2E-19 127.5 8.3 131 5-148 134-284 (334)
22 1y9u_A Putative iron binding p 99.6 2.7E-14 9.3E-19 122.6 11.9 129 8-149 121-273 (323)
23 1sbp_A Sulfate-binding protein 99.5 1.4E-14 4.8E-19 123.7 8.4 130 4-148 107-257 (310)
24 2hxw_A Major antigenic peptide 99.4 1.2E-12 4.2E-17 107.6 8.5 122 3-147 92-225 (237)
25 3cfx_A UPF0100 protein MA_0280 99.3 1E-11 3.5E-16 106.6 11.2 123 5-146 102-288 (296)
26 3cij_A UPF0100 protein AF_0094 99.3 1.1E-11 3.6E-16 106.3 11.0 124 5-146 102-287 (295)
27 3r26_A Molybdate-binding perip 99.2 2E-11 7E-16 101.8 9.0 119 6-146 107-229 (237)
28 3cfz_A UPF0100 protein MJ1186; 99.1 4E-10 1.4E-14 96.4 10.1 119 5-144 102-282 (292)
29 3gzg_A Molybdate-binding perip 99.1 4.7E-10 1.6E-14 95.1 9.3 122 4-146 118-245 (253)
30 1atg_A MODA, periplasmic molyb 99.0 2.3E-10 7.8E-15 91.9 5.7 123 7-146 94-222 (231)
31 3quf_A Extracellular solute-bi 98.8 1.5E-08 5.1E-13 89.6 10.5 101 41-153 224-340 (414)
32 4dxb_A RG13, maltose-binding p 98.8 1.2E-08 4E-13 96.7 8.4 100 40-151 189-298 (637)
33 2gha_A Maltose ABC transporter 98.8 2.2E-08 7.4E-13 87.9 9.5 133 4-148 122-297 (382)
34 3osr_A Maltose-binding peripla 98.7 6E-08 2.1E-12 92.6 10.1 134 4-149 160-332 (653)
35 2xd3_A MALX, maltose/maltodext 98.7 9.6E-08 3.3E-12 84.8 10.8 96 41-148 224-332 (416)
36 3uor_A ABC transporter sugar b 98.7 1.4E-07 4.7E-12 85.1 11.5 132 4-147 161-334 (458)
37 1urs_A Maltose-binding protein 98.6 8.3E-08 2.8E-12 84.7 9.1 131 4-148 154-320 (402)
38 2zyo_A Solute-binding protein; 98.6 1.7E-07 5.8E-12 82.4 11.1 132 4-147 142-313 (397)
39 3k01_A Acarbose/maltose bindin 98.6 2.8E-08 9.5E-13 87.9 5.5 97 40-148 219-330 (412)
40 1hsj_A Fusion protein consisti 98.6 3.6E-08 1.2E-12 89.6 5.8 132 5-148 125-295 (487)
41 1mh3_A Maltose binding-A1 home 98.6 1.6E-07 5.3E-12 83.4 9.1 133 4-148 124-295 (421)
42 2xz3_A Maltose ABC transporter 98.6 3.3E-08 1.1E-12 90.1 4.8 132 5-148 126-296 (463)
43 1y4c_A Maltose binding protein 98.6 4.8E-08 1.6E-12 90.2 5.8 132 5-148 125-295 (494)
44 3csg_A MBP, maltose-binding pr 98.6 1.5E-07 5.1E-12 85.1 9.0 133 4-148 122-293 (461)
45 2vgq_A Maltose-binding peripla 98.6 4.8E-08 1.6E-12 89.0 5.6 132 5-148 140-310 (477)
46 3ob4_A Conglutin, maltose ABC 98.6 2.5E-07 8.6E-12 84.9 10.0 133 4-148 124-295 (500)
47 4hs7_A Bacterial extracellular 98.5 3.2E-07 1.1E-11 81.4 9.9 137 3-151 161-338 (420)
48 2zxt_A Maltose-binding peripla 98.5 5.1E-08 1.8E-12 88.8 3.7 132 5-148 125-295 (465)
49 3n94_A Fusion protein of malto 98.5 6.1E-07 2.1E-11 81.3 10.6 133 4-148 126-297 (475)
50 3py7_A Maltose-binding peripla 98.5 6E-07 2E-11 82.7 10.5 97 40-148 190-296 (523)
51 3oai_A Maltose-binding peripla 98.5 5.8E-07 2E-11 81.2 10.1 96 41-148 190-295 (507)
52 1r6z_P Chimera of maltose-bind 98.5 4.8E-07 1.6E-11 83.0 9.5 132 5-148 126-296 (509)
53 3iot_A Maltose-binding protein 98.5 3E-07 1E-11 82.8 7.9 96 41-148 190-295 (449)
54 3o3u_N Maltose-binding peripla 98.4 1.4E-06 4.8E-11 79.9 10.6 96 41-148 190-295 (581)
55 3f5f_A Maltose-binding peripla 98.4 1.5E-06 5.1E-11 82.4 10.9 133 4-148 124-295 (658)
56 3mq9_A Bone marrow stromal ant 98.4 1.8E-06 6.1E-11 78.7 10.8 95 41-147 204-308 (471)
57 4hw8_A Bacterial extracellular 98.4 5.4E-07 1.8E-11 79.9 7.1 96 41-148 230-335 (420)
58 3h4z_A Maltose-binding peripla 98.4 1.3E-06 4.5E-11 81.7 9.7 96 41-148 190-295 (568)
59 3h3g_A Fusion protein of malto 98.3 2.5E-06 8.5E-11 78.9 10.8 96 41-148 192-297 (539)
60 1elj_A Maltodextrin-binding pr 98.3 3.3E-06 1.1E-10 73.9 9.8 95 41-147 191-298 (381)
61 2gh9_A Maltose/maltodextrin-bi 98.2 5.5E-06 1.9E-10 72.5 10.3 132 5-148 127-301 (386)
62 3k6v_A Solute-binding protein 98.2 7.8E-06 2.7E-10 72.6 11.0 70 60-146 231-326 (354)
63 3thi_A Protein (thiaminase I); 98.2 6.6E-06 2.2E-10 71.3 9.0 76 61-148 216-297 (371)
64 3oo8_A ABC transporter binding 98.1 1E-05 3.4E-10 71.3 10.2 107 41-159 224-345 (415)
65 2heu_A Sugar ABC transporter, 98.1 2.8E-06 9.4E-11 74.9 6.1 95 41-147 216-325 (401)
66 4h1g_A Maltose binding protein 98.1 6.9E-06 2.4E-10 79.0 9.3 96 41-148 191-296 (715)
67 3mp6_A MBP, SGF29, maltose-bin 98.1 7.5E-06 2.6E-10 75.5 9.1 96 41-148 191-296 (522)
68 4b3n_A Maltose-binding peripla 98.1 4.6E-06 1.6E-10 78.4 7.7 96 41-148 204-309 (602)
69 2b3f_A Glucose-binding protein 98.0 7E-06 2.4E-10 72.3 7.0 95 41-147 203-309 (400)
70 3osq_A Maltose-binding peripla 98.0 1.9E-05 6.4E-10 75.5 8.7 96 41-148 472-577 (661)
71 3i3v_A Probable secreted solut 97.9 3.2E-06 1.1E-10 74.3 2.1 100 41-152 207-325 (405)
72 2w7y_A FCSSBP, probable sugar 97.7 1.4E-05 4.8E-10 70.9 3.0 95 41-148 241-343 (430)
73 4exk_A Maltose-binding peripla 97.7 5E-05 1.7E-09 69.6 6.5 99 40-150 193-301 (487)
74 4g68_A ABC transporter; transp 97.7 4.9E-05 1.7E-09 68.2 6.1 100 41-152 261-381 (456)
75 2z8f_A Galacto-N-biose/lacto-N 97.6 0.00013 4.6E-09 64.3 8.4 93 41-145 211-320 (412)
76 2nvu_B Maltose binding protein 97.6 3.4E-05 1.2E-09 74.9 4.3 96 41-148 194-299 (805)
77 1eu8_A Trehalose/maltose bindi 97.5 0.00048 1.7E-08 60.4 9.3 75 60-146 240-324 (409)
78 3omb_A Extracellular solute-bi 97.3 0.00039 1.3E-08 63.6 7.3 92 40-144 265-380 (535)
79 3a09_A ALGQ1; sugar binding pr 97.3 0.0011 3.7E-08 59.1 9.4 93 40-144 228-343 (490)
80 2uvj_A TOGB, ABC type periplas 97.1 0.001 3.5E-08 58.3 7.5 69 62-142 233-312 (408)
81 3dm0_A Maltose-binding peripla 96.7 0.0051 1.8E-07 57.4 9.3 94 41-146 190-293 (694)
82 4aq4_A SN-glycerol-3-phosphate 96.5 0.0079 2.7E-07 52.2 8.4 96 41-148 213-323 (419)
83 3vlv_A ALGQ1; sugar binding pr 96.4 0.0059 2E-07 55.4 7.3 31 102-144 313-343 (502)
84 4gqo_A LMO0859 protein; virule 95.9 0.012 4E-07 51.7 6.0 90 41-143 235-342 (433)
85 3muq_A Uncharacterized conserv 95.4 0.026 9.1E-07 47.1 6.3 59 78-145 173-231 (237)
86 4gd5_A Phosphate ABC transport 93.2 0.15 5.1E-06 42.5 6.0 120 4-144 138-268 (279)
87 3lr1_A Tungstate ABC transport 91.2 0.49 1.7E-05 39.3 6.8 52 86-145 181-232 (236)
88 3kn3_A Putative periplasmic pr 89.9 0.56 1.9E-05 39.2 6.0 53 86-146 185-237 (242)
89 1twy_A ABC transporter, peripl 82.6 13 0.00046 29.3 10.5 66 60-144 189-266 (290)
90 3qsl_A Putative exported prote 79.4 9.7 0.00033 31.3 8.9 68 60-140 178-256 (346)
91 3ksx_A Nitrate transport prote 76.1 13 0.00045 30.7 8.8 69 59-140 168-238 (324)
92 1ii5_A SLR1257 protein; membra 75.0 13 0.00044 28.2 7.9 79 46-138 131-212 (233)
93 3kbr_A Cyclohexadienyl dehydra 74.1 11 0.00036 29.1 7.2 67 44-110 138-207 (239)
94 3cvg_A Putative metal binding 69.9 4.4 0.00015 33.7 4.2 45 89-145 218-267 (294)
95 4ef1_A Pheromone COB1/lipoprot 67.7 17 0.0006 30.1 7.4 75 57-144 157-231 (246)
96 4h1x_A PBP 2, phosphate-bindin 67.3 5.2 0.00018 33.3 4.2 32 100-144 101-132 (265)
97 1xs5_A 29 kDa protein, membran 66.7 31 0.001 28.1 8.7 71 59-144 156-226 (241)
98 3qax_A Probable ABC transporte 66.1 14 0.00048 28.8 6.4 60 52-111 161-223 (268)
99 3ix1_A N-formyl-4-amino-5-amin 65.8 26 0.0009 28.4 8.3 69 60-140 143-217 (302)
100 3del_B Arginine binding protei 64.9 14 0.00048 28.4 6.1 60 52-111 140-202 (242)
101 2yjp_A Putative ABC transporte 64.2 25 0.00085 28.3 7.8 57 53-111 188-246 (291)
102 3k4u_A Binding component of AB 62.3 24 0.00083 27.2 7.1 91 4-111 103-198 (245)
103 2pyy_A Ionotropic glutamate re 61.5 16 0.00056 27.4 5.8 60 52-113 133-195 (228)
104 4i62_A Amino acid ABC transpor 61.1 23 0.00077 27.6 6.7 59 53-111 174-234 (269)
105 2yln_A Putative ABC transporte 59.2 22 0.00076 28.6 6.6 59 52-111 185-247 (283)
106 3mpk_A Virulence sensor protei 58.8 50 0.0017 26.0 8.6 66 45-111 153-223 (267)
107 3tql_A Arginine-binding protei 58.8 25 0.00085 26.3 6.5 59 53-111 134-198 (227)
108 2g29_A Nitrate transport prote 58.0 25 0.00087 30.6 7.1 33 56-88 191-223 (417)
109 2pvu_A ARTJ; basic amino acid 56.4 32 0.0011 27.1 7.0 60 52-111 171-233 (272)
110 2y7i_A STM4351; arginine-bindi 55.7 25 0.00086 26.5 6.0 41 53-93 136-177 (229)
111 4ecf_A ABC-type phosphate tran 55.7 6 0.00021 32.5 2.4 74 60-152 158-242 (264)
112 1wdn_A GLNBP, glutamine bindin 54.6 30 0.001 25.8 6.3 57 53-111 133-192 (226)
113 3c5t_B Exendin-4, exenatide; l 54.3 7.3 0.00025 22.0 1.9 14 128-141 9-22 (31)
114 2x26_A Periplasmic aliphatic s 53.9 13 0.00043 30.4 4.2 68 59-139 142-211 (308)
115 1zbm_A Hypothetical protein AF 53.4 20 0.00067 28.9 5.2 67 59-140 134-207 (280)
116 3tqw_A Methionine-binding prot 48.7 60 0.0021 26.7 7.5 64 68-144 164-227 (240)
117 3h7m_A Sensor protein; histidi 47.8 42 0.0014 25.2 6.2 86 6-111 109-200 (234)
118 1t5q_A Gastric inhibitory poly 46.6 10 0.00034 21.3 1.6 12 128-139 17-28 (30)
119 3i6v_A Periplasmic His/Glu/Gln 46.6 66 0.0023 24.6 7.2 50 45-94 120-171 (232)
120 2l63_A GLP-2, glucagon-like pe 45.6 11 0.00038 21.6 1.7 13 128-140 17-29 (33)
121 4esw_A Pyrimidine biosynthesis 45.6 15 0.00052 30.8 3.5 40 55-94 44-84 (342)
122 1xt8_A Putative amino-acid tra 45.5 64 0.0022 25.7 7.2 57 53-111 177-235 (292)
123 3un6_A Hypothetical protein sa 44.6 26 0.0009 29.1 4.8 72 57-140 190-264 (341)
124 3uif_A Sulfonate ABC transport 44.0 71 0.0024 26.5 7.5 29 59-88 156-184 (348)
125 2q88_A EHUB, putative ABC tran 44.0 43 0.0015 25.8 5.8 59 53-111 149-210 (257)
126 4exl_A PBP 1, phosphate-bindin 43.4 23 0.0008 28.9 4.2 18 129-146 219-236 (265)
127 1pc3_A Phosphate-binding prote 43.2 42 0.0014 28.6 6.0 75 60-143 209-320 (350)
128 4f3p_A Glutamine-binding perip 42.1 48 0.0016 25.5 5.8 67 45-113 144-215 (249)
129 3p7i_A PHND, subunit of alkylp 41.5 92 0.0032 26.0 7.8 73 42-114 36-114 (321)
130 2vha_A Periplasmic binding tra 41.2 97 0.0033 24.4 7.6 57 53-111 158-218 (287)
131 2g49_C Glucagon preproprotein; 40.9 16 0.00053 20.3 1.8 12 128-139 17-28 (29)
132 4h5g_A Amino acid ABC superfam 40.8 79 0.0027 24.4 6.9 69 43-111 135-207 (243)
133 3hv1_A Polar amino acid ABC up 40.6 55 0.0019 25.5 5.9 57 53-111 158-218 (268)
134 2iee_A ORF2, probable ABC tran 40.2 63 0.0022 25.4 6.3 58 52-111 153-216 (271)
135 3n5l_A Binding protein compone 40.0 1.1E+02 0.0038 25.2 8.0 56 59-114 47-104 (310)
136 1jrj_A Exendin-4; Trp-CAGE, GL 39.5 20 0.0007 21.2 2.3 14 128-141 17-30 (39)
137 3kzg_A Arginine 3RD transport 38.0 33 0.0011 26.2 4.1 59 52-111 133-200 (237)
138 2b4n_A Gastric inhibitory poly 36.9 17 0.00057 22.0 1.6 14 128-141 17-30 (42)
139 2de3_A Dibenzothiophene desulf 36.8 20 0.00067 30.8 2.8 66 61-140 210-279 (365)
140 2czl_A Hypothetical protein TT 36.4 35 0.0012 27.2 4.2 69 58-141 126-201 (272)
141 3iol_B Glucagon; receptor-liga 35.7 21 0.00072 20.0 1.8 12 128-139 17-28 (31)
142 2y7p_A LYSR-type regulatory pr 33.1 1E+02 0.0035 23.1 6.3 60 13-77 1-65 (218)
143 3un6_A Hypothetical protein sa 30.7 63 0.0022 26.7 5.0 37 59-95 93-129 (341)
144 1p99_A Hypothetical protein PG 30.2 56 0.0019 27.3 4.6 72 60-145 193-267 (295)
145 1pb7_A N-methyl-D-aspartate re 29.3 82 0.0028 25.4 5.3 61 53-115 200-261 (292)
146 3hn0_A Nitrate transport prote 28.4 48 0.0016 27.0 3.7 82 53-141 37-119 (283)
147 3n5l_A Binding protein compone 26.8 78 0.0027 26.2 4.8 52 60-113 159-214 (310)
148 3uif_A Sulfonate ABC transport 26.8 1E+02 0.0034 25.5 5.6 35 60-94 59-93 (348)
149 2x26_A Periplasmic aliphatic s 26.7 88 0.003 25.1 5.1 36 59-94 43-78 (308)
150 3ksx_A Nitrate transport prote 26.6 1E+02 0.0035 25.1 5.5 41 55-95 64-105 (324)
151 4got_A Methionine-binding lipo 26.1 52 0.0018 27.2 3.5 75 58-144 160-234 (249)
152 4dz1_A DALS D-alanine transpor 26.1 2E+02 0.0068 22.1 7.0 59 52-112 166-226 (259)
153 2rrh_A VIP peptides; peptide h 25.3 36 0.0012 18.7 1.6 11 129-139 18-28 (29)
154 1oef_A Apolipoprotein E; glyco 24.4 36 0.0012 17.9 1.5 24 182-205 2-25 (26)
155 3ix1_A N-formyl-4-amino-5-amin 23.2 65 0.0022 25.9 3.6 34 60-93 46-79 (302)
156 4eq9_A ABC transporter substra 23.0 1.4E+02 0.0047 22.4 5.4 53 59-112 152-206 (246)
157 4ib2_A Putative lipoprotein; p 22.9 2.3E+02 0.0077 23.3 6.9 72 59-144 164-238 (252)
158 2v25_A Major cell-binding fact 22.8 51 0.0017 25.2 2.7 57 52-112 175-232 (259)
159 1ixh_A Phosphate-binding prote 22.6 55 0.0019 27.3 3.1 15 128-143 271-285 (321)
160 3g3k_A Glutamate receptor, ion 22.0 2.6E+02 0.009 21.2 10.3 58 53-113 168-226 (259)
161 3hn0_A Nitrate transport prote 21.3 68 0.0023 26.1 3.3 36 59-94 133-168 (283)
162 3p7i_A PHND, subunit of alkylp 20.8 1.6E+02 0.0056 24.5 5.7 52 60-113 168-223 (321)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=100.00 E-value=2.6e-34 Score=250.85 Aligned_cols=190 Identities=23% Similarity=0.335 Sum_probs=165.5
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHHHHHH-----------ccHHHHHHHHHHhccccceeccchhhhhhhcCcEE
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQAA-----------AGRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVW 71 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~-----------~g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~ 71 (215)
..+|+||+|||||+|+|++++.++.++.+++++. .+...+.+.+..+++++..+++++..+.+++||++
T Consensus 128 ~~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~ 207 (333)
T 4gl0_A 128 DKNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAG 207 (333)
T ss_dssp TCCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CC
T ss_pred cCCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchh
Confidence 3578999999999999999999999998888752 13557788889999999888888888999999999
Q ss_pred EEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 72 IAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 72 ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
++++|++++..++.++.++.+++|+||+.+|+|+++|+|+|+|++ +|++||||++|||+|+.++..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a~n~e------------~A~~fi~fllspe~q~~~~~~~g 275 (333)
T 4gl0_A 208 VAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD------------GAHKFINFMLKPENAAINAEYVG 275 (333)
T ss_dssp EEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHHHC
T ss_pred eehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCCCCHH------------HHHHHHHHhcCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998 89999999999999988777666
Q ss_pred ChhhhhcCCCCCchhhh---cCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 152 LPEELLKGKPSLDTKLI---AGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~l~---~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
|++.+..+.+.+++++. .++|+.+.+.+++++.+++++..+.|+++|++||..
T Consensus 276 y~~~n~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~K~~ 331 (333)
T 4gl0_A 276 YATPNAKAVELLPKEISSDERFYPDMDELNNLEVYDNLGKRMLSYYNELFLEFKMY 331 (333)
T ss_dssp CBCCBHHHHHHSCHHHHTCTTTSCCGGGGTTEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHhCCHHHHhCcccCCCHHHHhhCeehhcCCHHHHHHHHHHHHHHHhh
Confidence 66655554444555442 478899999999999999999999999999999964
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=99.96 E-value=1.1e-29 Score=220.82 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=164.7
Q ss_pred CCCCCChhhhcCccCCCceeeecChhHHHHHHHH-c----------cHHHHHHHHHHhccccceeccchhhhhhhcCcEE
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPREVIGTQAA-A----------GRIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVW 71 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~-~----------g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~ 71 (215)
+.+|+||++|++++++|++++.++..+.+++++. . +.+++.++|.++++++..|++++..+.|.+|+++
T Consensus 125 ~~~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~ 204 (330)
T 4eqb_A 125 DEAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVA 204 (330)
T ss_dssp SSCCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEEEESTTHHHHHHTTCCS
T ss_pred CCCCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhHhheeCcHHHHHHHhcCCEE
Confidence 3579999999999999999999999888888752 2 2468889999999999888887888999999999
Q ss_pred EEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 72 IAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 72 ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
+++.|++++..+...+.++.+++|++|+.+|.++++|+++++|++ +|++||+|+++||.|..++...+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~~~~~~~~~g 272 (330)
T 4eqb_A 205 IGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQD------------SAYAFINFMLKPENALQNAEYVG 272 (330)
T ss_dssp EEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHHHC
T ss_pred EEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHhhC
Confidence 999999999999888999999999999999999999999999998 89999999999999987766556
Q ss_pred ChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 152 LPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 152 ~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
+.+.+..+.+.+++++ +.++|+.+.+.+++++++++++..+.|+++|+++|+.
T Consensus 273 ~~p~~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~k~~ 328 (330)
T 4eqb_A 273 YSTPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMY 328 (330)
T ss_dssp CBCSBHHHHHTSCHHHHTCTTTSCCHHHHHTEECCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHhCCHHHhhCcccCCCHHHHhhceEecCCCHHHHHHHHHHHHHHHhc
Confidence 5555544433444443 2478999999999999999988899999999999964
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=99.95 E-value=1.4e-28 Score=214.40 Aligned_cols=188 Identities=18% Similarity=0.314 Sum_probs=160.8
Q ss_pred CCCChhhhcCccCCCc-----eeeecChhHHHHHHHH-c----------cHHHHHHHHHHhccccceeccchhhhhhhcC
Q 040870 5 GFKDWKDLWLPELAGR-----ISMVNSPREVIGTQAA-A----------GRIAVQQNLALLGNQVRLFDRTHYLKVFGIG 68 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gr-----i~~~d~~~~~~~~al~-~----------g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~G 68 (215)
+|+||++|++++++|+ +++.+++..++++++. . +.+++.++|.++++++..|++++..+.|.+|
T Consensus 134 ~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G 213 (346)
T 3ttm_A 134 PVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANG 213 (346)
T ss_dssp CTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCEECSSTHHHHHHHT
T ss_pred CCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHhhheeCChhHHHHHhcC
Confidence 7999999999987766 6888888888887652 2 2468899999999999999887888999999
Q ss_pred cEEEEEechhcHHHHHH------cCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHH
Q 040870 69 DVWIAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTAR 142 (215)
Q Consensus 69 ev~ia~~w~~~~~~~~~------~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~ 142 (215)
++++++.|++++..++. .+.++.+++|++|+.+|.++++|+++++|++ +|++||+|+++||.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~------------~A~~fi~fl~s~e~ 281 (346)
T 3ttm_A 214 NICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTE------------GALAFVNFLMKPEI 281 (346)
T ss_dssp SCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTCEEEEEEEEECBTTCSCSH------------HHHHHHHHHTSHHH
T ss_pred CeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCCceEEEEEEEEECCCCCHH------------HHHHHHHHhcCHHH
Confidence 99999999999987764 3778999999999999999999999999998 89999999999999
Q ss_pred hCCCCCCCCChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 143 ALPFNTRVKLPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
|..++...++.+.+..+.+.+++++ +.++|+.+++.+++++.+++++..+.|+++|++||+.
T Consensus 282 q~~~~~~~g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~g 346 (346)
T 3ttm_A 282 MAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSG 346 (346)
T ss_dssp HHHHHHHHCCCBSBTTTGGGSCHHHHTCTTTSCCHHHHTTEEECCCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhCCCCccHHHHhhCCHHHhhCCCcCCCHHHHhhCeeecCCCHHHHHHHHHHHHHHhcC
Confidence 9877766666666655555555554 3478899999999999999988899999999999963
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=99.94 E-value=1.9e-27 Score=206.18 Aligned_cols=186 Identities=22% Similarity=0.376 Sum_probs=158.4
Q ss_pred CCCChhhhcCccCCCc-----eeeecChhHHHHHHHH-c----------cHHHHHHHHHHhccccceeccchhhhhhhcC
Q 040870 5 GFKDWKDLWLPELAGR-----ISMVNSPREVIGTQAA-A----------GRIAVQQNLALLGNQVRLFDRTHYLKVFGIG 68 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gr-----i~~~d~~~~~~~~al~-~----------g~~~a~~~L~~l~~~v~~~~~~~~~~~~~~G 68 (215)
+|+||+||++++++|+ +++.+++...+++++. . +.+++.++|.++++++..|++++..+.|.+|
T Consensus 130 ~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G 209 (340)
T 3ttn_A 130 PIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANG 209 (340)
T ss_dssp CCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCEECSSHHHHHHHHT
T ss_pred CCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHHhheeCCchHHHHHhcC
Confidence 7999999999988776 5788888888777652 2 2468899999999999888887888999999
Q ss_pred cEEEEEechhcHHHHHH------cCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHH
Q 040870 69 DVWIAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTAR 142 (215)
Q Consensus 69 ev~ia~~w~~~~~~~~~------~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~ 142 (215)
++.+++.|++++..+.. .+.++.+++|++|+.+|.++++|+++++|++ +|++||+|+++||.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~ 277 (340)
T 3ttn_A 210 NICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAAD------------NAYAFIDYLLRPEV 277 (340)
T ss_dssp SCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCCEEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHH
T ss_pred CeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCccceeEEEEEEECCCCCHH------------HHHHHHHHhcCHHH
Confidence 99999999999887754 3778999999999999999999999999998 89999999999999
Q ss_pred hCCCCCCCCChhhhhcCCCCCchhh---hcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHh
Q 040870 143 ALPFNTRVKLPEELLKGKPSLDTKL---IAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQ 202 (215)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk 202 (215)
|..++...++.+.+..+.+.+++++ +.++|+.+++.++.++++++++..+.|+++|++||
T Consensus 278 q~~~~~~~g~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~k 340 (340)
T 3ttn_A 278 IAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIK 340 (340)
T ss_dssp HHHHHHHHCCEESCGGGGGGSCHHHHTBTTTSCCHHHHTTCEECCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCccHHHHhhCCHHHHhCCCCCCCHHHHhhcccccCCCHHHHHHHHHHHHhcC
Confidence 9887776666665555544455554 24788999999999999999888999999999986
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.94 E-value=1e-26 Score=201.33 Aligned_cols=188 Identities=25% Similarity=0.376 Sum_probs=156.2
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH-Hcc----------HHHHHHHHHHhccccceeccchhhhhhhcCcEEE
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA-AAG----------RIAVQQNLALLGNQVRLFDRTHYLKVFGIGDVWI 72 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al-~~g----------~~~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~i 72 (215)
.+|+||+||++++++|++++.++..+.++.++ ..| ..++.++|.++++++..|++++..+.|.+|++.+
T Consensus 123 ~p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~~~ 202 (325)
T 1pot_A 123 KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNL 202 (325)
T ss_dssp TTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSE
T ss_pred CCCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCchHhHHHhcCCEEE
Confidence 45699999999999999999988777776654 222 4678899999999887776667788999999999
Q ss_pred EEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCCC
Q 040870 73 AVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKL 152 (215)
Q Consensus 73 a~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~~ 152 (215)
+++|++.......++.++.+++|++|+.+|.++++|+++++|++ +|++||+|+++|+.|..+....++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~~g~ 270 (325)
T 1pot_A 203 GMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAETIGY 270 (325)
T ss_dssp EEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHHHCC
T ss_pred EEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHhhCC
Confidence 99999998887777889999999999999999999999999998 899999999999998776655555
Q ss_pred hhhhhcCCCCCchhhh---cCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 153 PEELLKGKPSLDTKLI---AGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 153 ~~~~~~~~~~~~~~l~---~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
.+.+..+...+++++. .++|+.+.+.++.++.+++++ .+.|+++|++||+.
T Consensus 271 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~ 324 (325)
T 1pot_A 271 PTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAA-SSIYEEYYQKLKAG 324 (325)
T ss_dssp CCSBSTTTTTSCHHHHTCTTTSCCHHHHHHSEECCCCGGG-HHHHHHHHHHHTTC
T ss_pred CCccHHHHHhcCHHHHhCcccCCCHHHHhhcccccCCCHH-HHHHHHHHHHHhcc
Confidence 5555444444554442 357788999999999998765 89999999999975
No 6
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.88 E-value=4.3e-23 Score=180.44 Aligned_cols=185 Identities=20% Similarity=0.298 Sum_probs=144.1
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH-Hcc----------HHHHHHHHHH-hccccceeccchhhhhhhcCcEE
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA-AAG----------RIAVQQNLAL-LGNQVRLFDRTHYLKVFGIGDVW 71 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al-~~g----------~~~a~~~L~~-l~~~v~~~~~~~~~~~~~~Gev~ 71 (215)
++|+||+||++++++|++++.+.+...++.++ ..| ..++.++|.+ +++++..|+.++..+.|.+|++.
T Consensus 143 ~~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~f~~G~~a 222 (343)
T 2v84_A 143 SYARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFV 222 (343)
T ss_dssp SCCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHTGGGEEEECSSSHHHHHHHTSCS
T ss_pred CCCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhheeCchHHHHHHhcCCEE
Confidence 36899999999999999999887766666554 222 3578889999 88887777556778899999999
Q ss_pred EEEechhcHHH--HHHcCCCeEEEecC-CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 72 IAVGWSSDVLP--AVKRMSNVAVVVPK-SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 72 ia~~w~~~~~~--~~~~~~~v~~v~P~-eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+++.|++.... ....+.++.+++|+ +|+..+.++++|+++++|++ +|.+||+|+++|+.|..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~I~~~s~~~~------------aA~~Fi~~l~s~e~q~~~~~ 290 (343)
T 2v84_A 223 VAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRD------------LAHAFINFFLEPAHYAEFLD 290 (343)
T ss_dssp EEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEBEETTCSCHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 99999988876 55567789999999 99999999999999999998 89999999999999865543
Q ss_pred CCCChh-hhhcCCCCCchhhhcCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 149 RVKLPE-ELLKGKPSLDTKLIAGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~l~~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
..++.+ .+..+.+.++ +-+. + +.+.++++.++.++++ ..+.|+++|++||+.
T Consensus 291 ~~g~~P~~~~~a~~~~~-~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~ 343 (343)
T 2v84_A 291 TFGFPSTIHREAAAYQK-KTPY-Y-SEHDLERGTLKTDVGA-AIEHYNAHWNAVRFR 343 (343)
T ss_dssp HHTCCCSSBTTGGGGCC-SCCS-S-CGGGGSSSEECCCCGG-GHHHHHHHHHHHHHC
T ss_pred hhCCCCCcchhHHHhcc-cccc-C-CHHHHhhceeccCCCH-HHHHHHHHHHHHhcC
Confidence 333332 2222211111 1123 5 6788999999999875 489999999999863
No 7
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.88 E-value=1.7e-22 Score=174.34 Aligned_cols=183 Identities=13% Similarity=0.164 Sum_probs=146.7
Q ss_pred CCCChhhhcCc-cCCCceeeecChhHHHHHHHH-c----------cHHHHHHHHHHhccccceecc--chhhhhhhcCcE
Q 040870 5 GFKDWKDLWLP-ELAGRISMVNSPREVIGTQAA-A----------GRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDV 70 (215)
Q Consensus 5 ~p~sW~dL~dp-~~~Gri~~~d~~~~~~~~al~-~----------g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev 70 (215)
+|+||+||+++ +|+|++++.+++...++.++. . +.+++.++|.++++++..|+. ++..+.|.+|++
T Consensus 120 ~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~Ge~ 199 (324)
T 4i1d_A 120 APNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEV 199 (324)
T ss_dssp CCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHHHGGGCSEEECSHHHHHHHHHHTSC
T ss_pred CCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHHHHHHHHHHHHHHhhhhhhhccCcchHHHHHhCCCE
Confidence 69999999999 999999999987777777652 1 467899999999999977754 357789999999
Q ss_pred EEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870 71 WIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV 150 (215)
Q Consensus 71 ~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~ 150 (215)
++++.|++++......+.++.+++| |+..+.++++|+++++|++ +|++||+|++|||.|..++...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~i~k~s~~~~------------~A~~fi~fl~s~e~q~~~~~~~ 265 (324)
T 4i1d_A 200 DMEMAWNGRVSAVAKEGAKVSFTYN--QGILQSTSLCILKGAPNLE------------TAVKFLNEAVDPVHQANLPLHI 265 (324)
T ss_dssp SEEEEEHHHHHHHHHTTCSEEEEEE--EEEEEEEEEEEBTTCTTHH------------HHHHHHHHHTCHHHHHHGGGTS
T ss_pred EEEecccHHHHHHHhcCCCeEEEec--CeeeeccEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHhC
Confidence 9999999999988888999999995 8999999999999999998 8999999999999999998888
Q ss_pred CChhhhhcCCCC--CchhhhcCCCC-HHHhhcccccCC--CCHHHHH-HHHHHHHHHh
Q 040870 151 KLPEELLKGKPS--LDTKLIAGVPP-AEILARCEFLEP--LSEATLS-DYEWLVANLQ 202 (215)
Q Consensus 151 ~~~~~~~~~~~~--~~~~l~~~~p~-~e~~~~~~~~~~--~~~~~~~-~~~~~W~~vk 202 (215)
++.+.+..+.+. +++++...+|. ++.+.++..... .. +.++ .+.+.|+++.
T Consensus 266 ~~~p~~~~a~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~-~~~~~~~~~~w~~~~ 322 (324)
T 4i1d_A 266 DYGPGNPKAFETNVIKPERAAQLPSEPANAAKQALMSYAWWS-SPAGEAAEKRWASFM 322 (324)
T ss_dssp SCEESSGGGGGSSCSCHHHHTTSTTSHHHHTTSEECCHHHHT-SHHHHHHHHHHHHHC
T ss_pred CCCCCChhhhhhcCCCHHHHhhCCCChHHHhcccCCCHHHHH-hccchHHHHHHHHHH
Confidence 877766655433 56665445553 444544433211 11 3466 7888898864
No 8
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.88 E-value=3.5e-23 Score=179.17 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=141.5
Q ss_pred CCCChhhhcCcc-CCCceeeec-ChhHHHHHHHH-c----------cHHHHHHHHHHhccccceecc-chhhhhhhcCcE
Q 040870 5 GFKDWKDLWLPE-LAGRISMVN-SPREVIGTQAA-A----------GRIAVQQNLALLGNQVRLFDR-THYLKVFGIGDV 70 (215)
Q Consensus 5 ~p~sW~dL~dp~-~~Gri~~~d-~~~~~~~~al~-~----------g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Gev 70 (215)
+|+||+||++++ |+|++++.+ +....++.++. . +.++++++|.++++++..+.+ ++..+.|.+|++
T Consensus 115 ~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~G~~ 194 (320)
T 4euo_A 115 CPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEA 194 (320)
T ss_dssp CCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHTTGGGEEEECSHHHHHHHHHTTSS
T ss_pred CCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHHHHHHHHHHHHHhhhceeEeCCCchHHHHHHcCCE
Confidence 689999999984 999999999 66667777652 1 567899999999999966644 467789999999
Q ss_pred EEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCC
Q 040870 71 WIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRV 150 (215)
Q Consensus 71 ~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~ 150 (215)
++++.|++++..+.+.+.++.+++ +|+..|+++++|+++++|++ +|++||+|++|||.|..++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~k~s~~~e------------~A~~fi~fl~s~e~q~~~~~~~ 260 (320)
T 4euo_A 195 PFGSVWNGRMTALEQSGVKVETSW--AQNITAADSLVVPKGTKNKD------------AAMKFIALATSAQAQADMATAT 260 (320)
T ss_dssp CEEEEEHHHHHHHHHTTCCCEEEE--EEEEEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHHH
T ss_pred EEEEeecHHHHHHHhCCCCeEEEe--cCceeecceEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHhc
Confidence 999999999988888899999998 79999999999999999998 8999999999999998877666
Q ss_pred CChhhhhcCCCCCchhhhcCCCCHHHhhcccccCC-CCHHHHHHHHHHHHHHhCC
Q 040870 151 KLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEP-LSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~p~~e~~~~~~~~~~-~~~~~~~~~~~~W~~vk~~ 204 (215)
++.+.+..+...+++++...+|.. ...+...... .-.+..+.+.+.|++.++.
T Consensus 261 ~~~p~~~~a~~~l~~~~~~~~p~~-~~~~~~~~d~~~~~~~~~~~~~r~~~~~~~ 314 (320)
T 4euo_A 261 GYAPVNIESAKLMDPKIAKSLPDQ-QTESQVNADMNYWAQHRDEIGERWYAWQAK 314 (320)
T ss_dssp SCBCSBTTSGGGSCHHHHTTSGGG-CCTTEEECCHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHhhCCHHHHhhCCCc-chhhccCcCHHHHHHhHHHHHHHHHHHhhh
Confidence 665555554444455543344432 1112211110 0023568888899887753
No 9
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.86 E-value=3.2e-22 Score=173.98 Aligned_cols=188 Identities=21% Similarity=0.354 Sum_probs=147.2
Q ss_pred CCCChhhhcCccCCCcee-----eecChhHHHHHHH-Hcc----------HH-HHHHHHHHhccccceeccchhhhhhhc
Q 040870 5 GFKDWKDLWLPELAGRIS-----MVNSPREVIGTQA-AAG----------RI-AVQQNLALLGNQVRLFDRTHYLKVFGI 67 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~-----~~d~~~~~~~~al-~~g----------~~-~a~~~L~~l~~~v~~~~~~~~~~~~~~ 67 (215)
+|+||++|++++++|++. +.+.+...++..+ ..| .. ++.++|.++.+++..|++++..+.|.+
T Consensus 130 ~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~ 209 (344)
T 1a99_A 130 PVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLAN 209 (344)
T ss_dssp CTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCEECSSTHHHHHHT
T ss_pred CCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhccceeEecChhHHHHhhc
Confidence 689999999987877765 5566666666554 222 35 788899999998877776677889999
Q ss_pred CcEEEEEechhcHHHHHH------cCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHH
Q 040870 68 GDVWIAVGWSSDVLPAVK------RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTA 141 (215)
Q Consensus 68 Gev~ia~~w~~~~~~~~~------~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe 141 (215)
|++.+++.|++.+..... .+.++.+++|++|+..|.++++|+++++|++ +|.+||+|++||+
T Consensus 210 G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e 277 (344)
T 1a99_A 210 GDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKD------------EAYQFLNYLLRPD 277 (344)
T ss_dssp TSCSEEEEEHHHHHHHHHHHHHHTCSCCEEEECCTTCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHH
T ss_pred CCEEEEEEccHHHHHHHHhccccCCCCceEEEECCCCceeEEEeeEEECCCCCHH------------HHHHHHHHHcCHH
Confidence 999999999988876654 3668999999999999999999999999998 8999999999999
Q ss_pred HhCCCCCCCCChhhhhcCCCCCchhhh---cCCCCHHHhhcccccCCCCHHHHHHHHHHHHHHhCC
Q 040870 142 RALPFNTRVKLPEELLKGKPSLDTKLI---AGVPPAEILARCEFLEPLSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~p~~e~~~~~~~~~~~~~~~~~~~~~~W~~vk~~ 204 (215)
.|..+....++.+.+......+++++. ...|..+.++++.+.+.++++..+.+.++|++++..
T Consensus 278 ~q~~~~~~~g~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 343 (344)
T 1a99_A 278 VVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSG 343 (344)
T ss_dssp HHHHHHHHHCCEESBTTTGGGSCHHHHTCTTTSCCHHHHTTEECCCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCCCcchHHHhhCCHHHhhCccCCCCHHHHhhceecccCCHHHHHHHHHHHHHHhcc
Confidence 987665544444444333222333332 246678889999998888877889999999999864
No 10
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.86 E-value=4.4e-22 Score=174.70 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=141.0
Q ss_pred CCCCChhhhcCc-cCCCceeeecChhHHHHHHHH-----------ccHHHHHHHHHHhccccceecc--chhhhhhhcCc
Q 040870 4 NGFKDWKDLWLP-ELAGRISMVNSPREVIGTQAA-----------AGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGD 69 (215)
Q Consensus 4 ~~p~sW~dL~dp-~~~Gri~~~d~~~~~~~~al~-----------~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Ge 69 (215)
.+|+||+||+++ +|+|++++.++....++.++. .+.+++.++|.++++++..|+. ++..+.|.+|+
T Consensus 154 ~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~ 233 (365)
T 3rpw_A 154 KAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPIDMDRALKKLKEIKPHVVKWWTTAAQPPQLILDGE 233 (365)
T ss_dssp SSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSCCHHHHHHHHHHHGGGEEEEECSTTHHHHHHHTTS
T ss_pred CCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCchhHHHHHHHHHHHhhhcccccCCccHHHHHHHcCC
Confidence 379999999999 899999999988777777652 1567899999999999877744 46788999999
Q ss_pred EEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCC
Q 040870 70 VWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTR 149 (215)
Q Consensus 70 v~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~ 149 (215)
+++++.|++++..+.+++.++.+++| |+..+.++++|+++++|++ +|++||+|++|||.|..++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~~~~i~k~s~~~~------------~A~~fi~~l~s~e~q~~~~~~ 299 (365)
T 3rpw_A 234 ADMCLAYTGSMSKLALEGAPIDLTFN--QGFVYYDFFSIPKGAPNYD------------NALKLLSWRLDPKRAAQLTST 299 (365)
T ss_dssp CSEEEEEHHHHHHHHHHTCSEEEEEE--EEEEEEEEEECBTTCTTHH------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred eEEEEehhHHHHHHHhCCCCeEEeeC--CeeeeceEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh
Confidence 99999999999988888999999997 8999999999999999998 899999999999999877665
Q ss_pred CCChhhhhcCCCC-CchhhhcCCCC-HHHhhcccccCC-CCHH--------HHHHHHHHHHHHh
Q 040870 150 VKLPEELLKGKPS-LDTKLIAGVPP-AEILARCEFLEP-LSEA--------TLSDYEWLVANLQ 202 (215)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~l~~~~p~-~e~~~~~~~~~~-~~~~--------~~~~~~~~W~~vk 202 (215)
.++.+.+..+.+. +++++...+|. ++...++..... .-.+ ..+.+.+.|+++.
T Consensus 300 ~~~~P~~~~a~~~~l~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~w~~~~ 363 (365)
T 3rpw_A 300 FPVALPSKVVFDAATDKNIARYWANNPENVAKAIEWSPDFWGAPSPAGNSTNEEYGQEKLNAML 363 (365)
T ss_dssp SCCBCSCHHHHHHCSCGGGGGGSTTSHHHHHHSCCCCHHHHHSBCTTSSSBHHHHHHHHHHHHC
T ss_pred cCCCCCChhHHhcCCCHHHHhhCCCChHHHhcccCcCHHHHhccccccccccHHHHHHHHHHHH
Confidence 5554444332111 33333333443 444444332211 0013 5678888888764
No 11
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.82 E-value=8e-21 Score=164.46 Aligned_cols=182 Identities=19% Similarity=0.225 Sum_probs=134.1
Q ss_pred CCCCChhhhcCccCCCce----eeecChhHHHHH-----HH--Hc----cHHHHHHHHHHhcccccee-cc-chhhhhhh
Q 040870 4 NGFKDWKDLWLPELAGRI----SMVNSPREVIGT-----QA--AA----GRIAVQQNLALLGNQVRLF-DR-THYLKVFG 66 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri----~~~d~~~~~~~~-----al--~~----g~~~a~~~L~~l~~~v~~~-~~-~~~~~~~~ 66 (215)
.+|+||+||++++++|++ ++.+......+. .+ .+ +.+++.++|.++++++..+ .+ .+..+.|.
T Consensus 124 ~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 203 (333)
T 3pu5_A 124 GGVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGYGDIEASIATLERMKPHIFKFFTAFNDPVVLLT 203 (333)
T ss_dssp TCCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSSTTCHHHHHHHHHHHGGGEEEEECSTTHHHHHHH
T ss_pred CCCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcccccccCChHHHHHHHH
Confidence 479999999999999999 998754321111 11 22 3578899999999998544 33 36778999
Q ss_pred cCcEEEEEechhcHHHHHHcCCC-eEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 67 IGDVWIAVGWSSDVLPAVKRMSN-VAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 67 ~Gev~ia~~w~~~~~~~~~~~~~-v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
+|++++++.|++.+..+...+.+ +.+++|++|+..+.++++|++++ |++ +|++||+|++|||.|..
T Consensus 204 ~G~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~------------~A~~Fi~~l~s~e~q~~ 270 (333)
T 3pu5_A 204 SGEGAIGPGWDGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KED------------LAKAFMNYALGEEAQKA 270 (333)
T ss_dssp HTSCSEEEEEHHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHH------------HHHHHHHHHTSHHHHHH
T ss_pred cCCEEEEecccHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHH------------HHHHHHHHHcCHHHHHH
Confidence 99999999999999888888887 99999999999999999999999 998 89999999999999987
Q ss_pred CCCCCCChhhhhcCCCCCchhhhcCCCCHHHhhcccccCC--CCHHHHHHHHHHHHHHhCC
Q 040870 146 FNTRVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEP--LSEATLSDYEWLVANLQKP 204 (215)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~e~~~~~~~~~~--~~~~~~~~~~~~W~~vk~~ 204 (215)
++...++.+.+.... .++++...+|. +.++..... + .+..+.+.+.|++....
T Consensus 271 ~~~~~g~~P~~~~~~--~~~~~~~~~p~---~~~~~~~d~~~~-~~~~~~~~~~w~~~~~~ 325 (333)
T 3pu5_A 271 FCEAMYYGAVNRKVQ--YSEKLKHRLPS---IDSVQLVDTALL-IKNMSALLDLWNKRIAS 325 (333)
T ss_dssp HHHHHTCBCSCTTCC--CCTTTTTTSCC---TTTCBCCCHHHH-HHHHHHHHHHHHHHTC-
T ss_pred HHHhcCCCCCCCCcC--CCHHHHhcCcc---HhhccccCHHHH-HHHHHHHHHHHHHHhhh
Confidence 766555544443332 33333233333 233322211 1 24678889999987653
No 12
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=2.6e-18 Score=150.62 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=107.6
Q ss_pred CCCChhhhcC------ccCCCceeeecChhHHHHHHHH----ccHHHHHHHHHHhccc-cceecc-chhhhhhhcCcEEE
Q 040870 5 GFKDWKDLWL------PELAGRISMVNSPREVIGTQAA----AGRIAVQQNLALLGNQ-VRLFDR-THYLKVFGIGDVWI 72 (215)
Q Consensus 5 ~p~sW~dL~d------p~~~Gri~~~d~~~~~~~~al~----~g~~~a~~~L~~l~~~-v~~~~~-~~~~~~~~~Gev~i 72 (215)
+|+||+||++ ++|+|++++.+......+..+. .+.+++.++|.+++++ +..+.+ ++..+.|.+|++++
T Consensus 151 ~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~a~ 230 (355)
T 3c9h_A 151 PPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVL 230 (355)
T ss_dssp CCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHHHHHCTTHHHHHHHHHHTTCEEESCHHHHHHHHHTTSCSE
T ss_pred CCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcchhccHHHHHHHHHHHhcCCeecCCcHHHHHHHHCCCeEE
Confidence 6899999999 8999999998865544443321 1223678899988875 555543 46678899999999
Q ss_pred EEechhcHHHH-HHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 73 AVGWSSDVLPA-VKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 73 a~~w~~~~~~~-~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
++.|+++.... ...+.++.+++|++|+..+.++++|+++++|++ +|++||+|++|++.|..+....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~I~k~s~~~e------------aA~~Fi~fl~s~e~q~~~~~~~~ 298 (355)
T 3c9h_A 231 GYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPE------------LGRRYLEFFMSKEGQTIMARQLQ 298 (355)
T ss_dssp EEEEEHHHHHHHHHHCTTEEEECCSSCEEEECCEEEEETTBSCHH------------HHHHHHHHHHSHHHHHHHHHHSC
T ss_pred EEecchhHHHHHHhcCCCeeEEecCCCceeeeeEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhcCC
Confidence 99998887654 356788999999999999999999999999998 89999999999999876554333
Q ss_pred C
Q 040870 152 L 152 (215)
Q Consensus 152 ~ 152 (215)
+
T Consensus 299 ~ 299 (355)
T 3c9h_A 299 I 299 (355)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.75 E-value=6.6e-18 Score=145.70 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=131.9
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHH-----H-H-c------cHHHHHHHHHHhccccceecc--chhhhhhhcC
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-A-A------GRIAVQQNLALLGNQVRLFDR--THYLKVFGIG 68 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~-~------g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~G 68 (215)
.+|+||+||++++++|++++.+... ..+.. + . + +..++.+++.++.+++..+.. ++..+.|.+|
T Consensus 151 ~~p~tw~el~~~~~~g~~~~~~~~~-~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~G 229 (351)
T 4edp_A 151 IEINSWEDLWKPELKNKIAIPDITT-TNGPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNG 229 (351)
T ss_dssp CCCCSGGGGGCGGGTTCEEEECTTS-TTHHHHHHHHHHHHTCCHHHHTTHHHHHHHHHHGGGEEEEECCHHHHHHHHHTT
T ss_pred CCCCCHHHHhChHhcCCeeecCccc-ccchHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhhcccCChHHHHHHHHcC
Confidence 5799999999999999999987532 22221 1 1 1 236788999999988765533 4677899999
Q ss_pred cEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 69 DVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 69 ev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
++++++.|+..+......+.++.+++|++|+..+.++++|+++++|++ +|.+||+|+++||.|..+..
T Consensus 230 ~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~ 297 (351)
T 4edp_A 230 EIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD------------LAYEFINYALSKEVQEKTAK 297 (351)
T ss_dssp SCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHH
Confidence 999999999999888888999999999999999999999999999998 89999999999999977655
Q ss_pred CCCChhhhhcCCCCCchhhhcCCCCHHHhhcccccCCC-CHHHHHHHHHHHHHH
Q 040870 149 RVKLPEELLKGKPSLDTKLIAGVPPAEILARCEFLEPL-SEATLSDYEWLVANL 201 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~p~~e~~~~~~~~~~~-~~~~~~~~~~~W~~v 201 (215)
..++.+..... ..++++....|-++...++.....- -.+..+.+.+.|+++
T Consensus 298 ~~g~~P~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~ 349 (351)
T 4edp_A 298 ALNESPVNKEV--KLSEEETKNLTYGPVVDNAKVIDFKFVNSVMDQWVNNWNRI 349 (351)
T ss_dssp HHCCBCCBTTC--CCCTTTTTTSCCSHHHHTCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcCCc--cCCHHHHhccCCchhhhhccCCCHHHHhhhHHHHHHHHHhh
Confidence 44443333322 2233332222223444554432210 024567777888775
No 14
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.69 E-value=2e-16 Score=135.29 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=107.4
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhccccceecc--c-hhhhhhhcCcEEEEE
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLFDR--T-HYLKVFGIGDVWIAV 74 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~~~--~-~~~~~~~~Gev~ia~ 74 (215)
.+|+||+||++++++|++++.++... ++.. + ..|.+++.++|.++++++..+.. + ...+.|.+|++++++
T Consensus 117 ~~p~tw~dl~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~ 195 (322)
T 3e13_X 117 SKMKNYEDLAKAEFKGEIVMRSATAP-YSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAV 195 (322)
T ss_dssp TTCCSGGGGGSGGGTTCEECCCTTSH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHBSSSCCSSHHHHHHHHHHTSCSEEE
T ss_pred CCCCCHHHHhhhhhcCeEeecCCCCc-hhHHHHHHHHHhcCHHHHHHHHHHHHHhcCcCCCCCcHHHHHHHHCCCCcEEe
Confidence 47899999999999999999876432 2211 1 35778899999999988765532 2 346889999999999
Q ss_pred ec---hhcHHH-----HHHcCCCeEEEecC---CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 75 GW---SSDVLP-----AVKRMSNVAVVVPK---SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 75 ~w---~~~~~~-----~~~~~~~v~~v~P~---eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
++ .+.... ....+.++.+++|+ +|+..+.++++|+++++|++ +|++||+|++|||.|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q 263 (322)
T 3e13_X 196 MNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQD------------AAKKFMEFMLSPEIQ 263 (322)
T ss_dssp EEHHHHHHHHTCSSHHHHHHHHTEEEECTTTTTTCBCEEEEEEEEETTCSCHH------------HHHHHHHHHTSHHHH
T ss_pred echHHHHHHHhccccchhccccceeEecCCCCCCCceeeeeeeEEecCCCCHH------------HHHHHHHHHhCHHHH
Confidence 83 333321 22335689999999 89999999999999999998 899999999999999
Q ss_pred CCCCCCCCChhh
Q 040870 144 LPFNTRVKLPEE 155 (215)
Q Consensus 144 ~~~~~~~~~~~~ 155 (215)
..++....+.+.
T Consensus 264 ~~~~~~~~~~P~ 275 (322)
T 3e13_X 264 KILTDSNYEFPI 275 (322)
T ss_dssp HHHHHTTCCEES
T ss_pred HHHHhcCcccCC
Confidence 877665444333
No 15
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.68 E-value=3.6e-16 Score=135.70 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=106.3
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHH------HccHHHHHHHHHHhccccceecc--chhhhhhhcCcEEEEEe
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQA------AAGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al------~~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~ 75 (215)
++|+||+||++++++|++++.+.....++.++ ..| +++.+++.++.+++..+.. ++..+.|.+|++++++.
T Consensus 139 ~~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~a~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~ 217 (330)
T 2qry_A 139 NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYG-DDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLS 217 (330)
T ss_dssp SCCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHHG-GGHHHHHHHHHTTEEEEESSHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhhC-hHHHHHHHHHHhcCceeccChHHHHHHHhCCCEEEEEe
Confidence 36899999999999999999875544444322 112 4678888888888765533 35667899999999999
Q ss_pred chhcHH-HHH-HcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 76 WSSDVL-PAV-KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 76 w~~~~~-~~~-~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
|++... ... ..+.++.+++|++|+..+.++++|+++++|++ +|.+||+|+++|+.|..+....+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~~g 283 (330)
T 2qry_A 218 YTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTGNW 283 (330)
T ss_dssp ETTHHHHHHHHHCCCCEEECCCTTCEEEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHTTHHHHTC
T ss_pred cccHHHHHhhhccCCceeEEeCCCCCeeeeeEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhhcc
Confidence 998763 232 34568999999999999999999999999998 89999999999999988765333
No 16
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.62 E-value=4.5e-15 Score=127.05 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCCChhhhcCccCCCceeeecChhHH--HHHHH--HccHHHHHHHHHHhccccceecc-chhhhhhhcCcEEEEEechhc
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREV--IGTQA--AAGRIAVQQNLALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSD 79 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~--~~~al--~~g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~ 79 (215)
+|+||+||++++++|++++....... +...+ ..|.+++.+++.++.++...+.+ ++..+.|.+|++++++.|++.
T Consensus 120 ~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~ 199 (312)
T 1xvx_A 120 LPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKGEKATLEWLKAMKTNFTAYKGNSTVMKAVNAGQIDGGVIYHYY 199 (312)
T ss_dssp SCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSSSEEEEETHH
T ss_pred CCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhCcHHHHHHHHHHHHhCcccCCchHHHHHHHcCceEEEEecchh
Confidence 58999999999999999987321111 11111 24667788899988877644443 356788999999999999987
Q ss_pred HHHHHH----cCCCeEEEecCC---CceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC-CCCC
Q 040870 80 VLPAVK----RMSNVAVVVPKS---GASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF-NTRV 150 (215)
Q Consensus 80 ~~~~~~----~~~~v~~v~P~e---G~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~-~~~~ 150 (215)
...... .+.++.+++|.+ |+..+.++++|+++++|++ +|.+||+|++||+.|..+ ....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~~~ 266 (312)
T 1xvx_A 200 RFVDQAKTGENSGKTQLHYFKHQDPGAFVSISGGGVLASSKHPK------------EAQEFVKWITGKSGQDILRTNNA 266 (312)
T ss_dssp HHHHHTTTCTTTTTCEEECCCTTCGGGCEEEEEEEEBTTCSSHH------------HHHHHHHHHHSHHHHHHHHHSSS
T ss_pred HHHHHhhcccCCCceEEEccCCCCCcceeeeeeEEEecCCCCHH------------HHHHHHHHHhCHHHHHHHhhccC
Confidence 765332 345788889986 6778899999999999998 899999999999998777 5533
No 17
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.61 E-value=2.4e-15 Score=129.04 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=102.2
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhcccccee--ccc-hhhhhhhcCcEEEEEe
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLF--DRT-HYLKVFGIGDVWIAVG 75 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~--~~~-~~~~~~~~Gev~ia~~ 75 (215)
+|+||+||++++++|++++.+.. ..++.. + ..|.+++.+++.++.+++..+ ..+ +..+.|.+|++++++.
T Consensus 117 ~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~ 195 (320)
T 1q35_A 117 AGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIG 195 (320)
T ss_dssp TTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEE
T ss_pred CCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHCCCccEEec
Confidence 68999999999999999987643 223321 1 245677888999888775432 222 5678899999999999
Q ss_pred chhcHHHHHH--c----CCCeEEEec--CCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 76 WSSDVLPAVK--R----MSNVAVVVP--KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 76 w~~~~~~~~~--~----~~~v~~v~P--~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
|+........ . +.++.+++| ++|+..+.++++|+++++|++ +|.+||+|++||+.|..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~ 263 (320)
T 1q35_A 196 NSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKA------------NAVKLIEYLSGEKAQGLYA 263 (320)
T ss_dssp ETHHHHHHHHSTTTHHHHHTEEEECCCSTTCBEEEEEEEEEBTTCTTHH------------HHHHHHHHHHSHHHHHHHH
T ss_pred cHHHHHHhhhcccccCCCcceEEecCCCCCCccccceeEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHh
Confidence 9876655442 1 246899999 689999999999999999998 8999999999999987665
Q ss_pred CC
Q 040870 148 TR 149 (215)
Q Consensus 148 ~~ 149 (215)
..
T Consensus 264 ~~ 265 (320)
T 1q35_A 264 EL 265 (320)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 18
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.61 E-value=1.5e-15 Score=131.66 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhcccccee-c-c-chhhhhhhcCcEEEEEe
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLF-D-R-THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~-~-~-~~~~~~~~~Gev~ia~~ 75 (215)
+|+||+||++++++|++++.+... .++.. + ..|.+++.+++.++.+++..+ . + .+..+.|.+|++++++.
T Consensus 144 ~P~tw~dl~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~ 222 (346)
T 2voz_A 144 DLSTYEALADPQWRGKILVRPSSN-VYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIA 222 (346)
T ss_dssp GCCCSGGGGSGGGTTTEECCCTTS-HHHHHHHHHHHHHHCHHHHHHHHHHHHHTBSSSCCSCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHhhHHhcCcEEecCCCC-cchHHHHHHHHHhhchHHHHHHHHHHHHhcCccccCCcHHHHHHHHCCCceEEec
Confidence 689999999999999999876432 22211 1 246677888999888775422 2 2 35678899999999999
Q ss_pred chhcHHHHHH------c--CCCeEEEec-----CCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHH
Q 040870 76 WSSDVLPAVK------R--MSNVAVVVP-----KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTAR 142 (215)
Q Consensus 76 w~~~~~~~~~------~--~~~v~~v~P-----~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~ 142 (215)
|+........ . +.++.+++| ++|+..+.++++|+++++|++ +|.+||+|+++||.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~ 290 (346)
T 2voz_A 223 NSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRD------------AAIAFLEYLASDDA 290 (346)
T ss_dssp EHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHH
T ss_pred ccHHHHHHhhcccccccCCCCceeEecCCCCCCCCCceecceeEEEeCCCCCHH------------HHHHHHHHHcCHHH
Confidence 8765544332 1 246888899 688999999999999999998 89999999999999
Q ss_pred hCCCCCCCCC
Q 040870 143 ALPFNTRVKL 152 (215)
Q Consensus 143 ~~~~~~~~~~ 152 (215)
|..+....++
T Consensus 291 q~~~~~~~g~ 300 (346)
T 2voz_A 291 QRYFAEGNNE 300 (346)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhccCc
Confidence 8766554343
No 19
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.61 E-value=7.1e-15 Score=125.48 Aligned_cols=136 Identities=15% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCCCChhhhcCccCCCceeeecChhH--HHHHHH--HccHHHHHHHHHHhccccceecc-chhhhhhhcCcEEEEEechh
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPRE--VIGTQA--AAGRIAVQQNLALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSS 78 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~--~~~~al--~~g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~ 78 (215)
.+|+||+||++++++|++++.+.... .+...+ ..|.+++.++|.++.++...+.+ ++..+.|.+|++++++.|+.
T Consensus 116 ~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~ 195 (309)
T 1nnf_A 116 DMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNY 195 (309)
T ss_dssp GSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSCSEEEEEHH
T ss_pred CCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCCchHHHHHhcCCccEEEccHH
Confidence 36899999999999999998753221 111122 35667788999998877655533 35678899999999999988
Q ss_pred cHHHH-HH---cCCCeEEEecC---CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 79 DVLPA-VK---RMSNVAVVVPK---SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 79 ~~~~~-~~---~~~~v~~v~P~---eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
.+... .. .+.++.+++|. +|+..+.++++|+++++|++ +|.+||+|++|++.|..+....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~~~ 263 (309)
T 1nnf_A 196 YWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQA------------EAQKFVDFLASKKGQEALVAARA 263 (309)
T ss_dssp HHHHHHHHHCGGGCSEEEECCCTTCGGGCEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHHSC
T ss_pred HHHHHHhcccCCCCceEEeCCCCCCCceeeccccEEEEcCCCCHH------------HHHHHHHHHhCHHHHHHHHhcCC
Confidence 77665 33 35678887653 37778899999999999998 89999999999999876654333
No 20
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.58 E-value=4e-15 Score=127.53 Aligned_cols=130 Identities=11% Similarity=0.115 Sum_probs=91.3
Q ss_pred CCCChhhhc-CccCCCceeeecChhHHHHHH----H-Hcc--HH-HHHHHHHHh------------c-------ccccee
Q 040870 5 GFKDWKDLW-LPELAGRISMVNSPREVIGTQ----A-AAG--RI-AVQQNLALL------------G-------NQVRLF 56 (215)
Q Consensus 5 ~p~sW~dL~-dp~~~Gri~~~d~~~~~~~~a----l-~~g--~~-~a~~~L~~l------------~-------~~v~~~ 56 (215)
.|+||.||| +|+ +||++.|+..+..|.+ + ..+ .. ..++.|... . ++...+
T Consensus 109 ~p~sw~dll~~p~--~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~l~~~~~~~~~~~~~~ 186 (296)
T 3cg1_A 109 NPDKWYEILARED--VRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEENTNIYSNGTQIYAPKEITVNPGKIVI 186 (296)
T ss_dssp CGGGHHHHHTSTT--CCEEEECTTTCHHHHHHHHHHHHHHHHHTSCHHHHHTTTTBSCEEETTEEEECSSCCBCTTTEEE
T ss_pred CCCCHHHHhcCCC--cEEEeCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHhcccccccCcccccccccccccccccee
Confidence 469999988 575 7999998654444432 1 110 00 223334321 0 111233
Q ss_pred c-c-chhhhhhhcCcEEEEEechhcHHHHH------------------HcCCCeEEEecCCC----ceeeeceEEEeCCC
Q 040870 57 D-R-THYLKVFGIGDVWIAVGWSSDVLPAV------------------KRMSNVAVVVPKSG----ASLWADLWAIPAAS 112 (215)
Q Consensus 57 ~-~-~~~~~~~~~Gev~ia~~w~~~~~~~~------------------~~~~~v~~v~P~eG----~~~~~d~~~I~k~a 112 (215)
. + .+..+.+.+|++++++.|++++.... +.+.++.+++|++| ...+.++++|++++
T Consensus 187 ~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~~v~~~~p~~g~~~~~~~~~~~~~i~k~a 266 (296)
T 3cg1_A 187 RPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQISITLGSTGKTIKAKPIVYGVTVLKDA 266 (296)
T ss_dssp ESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHTTCEEEETTTCCEEECCCCEEEEEECTTC
T ss_pred cCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccccceeEEecCCcccccCceeeeeEEEeCCC
Confidence 2 2 46778899999999999999987542 24567999999999 56678899999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 113 RLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 113 ~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+|++ +|++|||||+||+.|..+..
T Consensus 267 ~~~~------------~A~~Fi~fl~s~e~q~~~~~ 290 (296)
T 3cg1_A 267 PNRE------------VAIEFLRYLLSENGKRIFEK 290 (296)
T ss_dssp TTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred CCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 9998 89999999999999865543
No 21
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.56 E-value=6e-15 Score=127.45 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=100.0
Q ss_pred CCCChhhhcCccCCCceeeecChhHHHHHH-----H-HccHHHHHHHHHHhcccccee--cc-chhhhhhhcCcEEEEEe
Q 040870 5 GFKDWKDLWLPELAGRISMVNSPREVIGTQ-----A-AAGRIAVQQNLALLGNQVRLF--DR-THYLKVFGIGDVWIAVG 75 (215)
Q Consensus 5 ~p~sW~dL~dp~~~Gri~~~d~~~~~~~~a-----l-~~g~~~a~~~L~~l~~~v~~~--~~-~~~~~~~~~Gev~ia~~ 75 (215)
+|+||+||++++++|++++.+.. ..++.. + ..|..++.+++.++.+++..+ .. .+..+.|.+|++.+++.
T Consensus 134 ~p~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~ 212 (334)
T 2pt1_A 134 ELSTYEELADPKWKGRVIIRSSS-NEYNQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLA 212 (334)
T ss_dssp GCCCSGGGGSGGGTTCBCCCCTT-SHHHHHHHHHHHHHHCHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEE
T ss_pred CCCCHHHHhhhhhcCeeEecCCC-CchHHHHHHHHHHccChHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhcCceeEEec
Confidence 68999999999999999987643 233322 1 246677888998887765322 22 24668899999999999
Q ss_pred chhcHHHHHH--------cCCCeEEEecC---CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 76 WSSDVLPAVK--------RMSNVAVVVPK---SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 76 w~~~~~~~~~--------~~~~v~~v~P~---eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
|+........ .+.++.+++|. +|+..+.++++|+++++|++ +|.+||+|++|||.|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~ 280 (334)
T 2pt1_A 213 NTYYMGRLLESEDPAQKAIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNRE------------GAVKFIEFLVSEPAQA 280 (334)
T ss_dssp EHHHHHHHHTCSCHHHHHHHHTEEEECCCTTTTCBCEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHH
T ss_pred cchhhHhhhhcccccccccccceeEEecCCCCCCCEeceeEEEEECCCCCHH------------HHHHHHHHHhCHHHHH
Confidence 8765443332 12468999998 68889999999999999998 8999999999999987
Q ss_pred CCCC
Q 040870 145 PFNT 148 (215)
Q Consensus 145 ~~~~ 148 (215)
.+..
T Consensus 281 ~~~~ 284 (334)
T 2pt1_A 281 FLAQ 284 (334)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 22
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.55 E-value=2.7e-14 Score=122.57 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=97.9
Q ss_pred ChhhhcCccCCCceeeecChhHHHHH-----HH-HccHHHHHHHHHHhcccccee--cc-chhhhhhhcCcEEEEEechh
Q 040870 8 DWKDLWLPELAGRISMVNSPREVIGT-----QA-AAGRIAVQQNLALLGNQVRLF--DR-THYLKVFGIGDVWIAVGWSS 78 (215)
Q Consensus 8 sW~dL~dp~~~Gri~~~d~~~~~~~~-----al-~~g~~~a~~~L~~l~~~v~~~--~~-~~~~~~~~~Gev~ia~~w~~ 78 (215)
||+||++++++|++++.+... .++. .+ ..|.+++.+++.++.++...+ .+ .+..+.|.+|++++++.|+.
T Consensus 121 tw~dl~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~ 199 (323)
T 1y9u_A 121 RYGDLADPKWKGKVCIRSGQH-PYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAY 199 (323)
T ss_dssp BGGGGGCGGGTTCEECCCTTS-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHBSSCSCSCHHHHHHHHHTTSCSEEEEEHH
T ss_pred CHHHHhhHHhCCcEeecCCCc-HhHHHHHHHHHHHhChHHHHHHHHHHHHccCcccCCCchHHHHHHhCCcceEEEecHH
Confidence 999999999999999875432 2211 11 246667888888888765432 22 25678899999999999987
Q ss_pred cHHHHHH-------cC--CCeEEEec------CCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 79 DVLPAVK-------RM--SNVAVVVP------KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 79 ~~~~~~~-------~~--~~v~~v~P------~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
....+.. .+ .++.+++| ++|+..+.++++|+++++|++ +|++||+|++|++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q 267 (323)
T 1y9u_A 200 YVGHMKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKA------------NAVKLLEYLVSEPAQ 267 (323)
T ss_dssp HHHHHHHSCTTSHHHHHHHTEEEECCBCC----CCBCEEEEEEEEETTCTTHH------------HHHHHHHHHTSHHHH
T ss_pred HHHHHhhccccccccCCCCceeEecCCCCCCCCCCeeeccceEEEEcCCCCHH------------HHHHHHHHHcCHHHH
Confidence 7655443 22 35888899 678888999999999999998 899999999999998
Q ss_pred CCCCCC
Q 040870 144 LPFNTR 149 (215)
Q Consensus 144 ~~~~~~ 149 (215)
..+...
T Consensus 268 ~~~~~~ 273 (323)
T 1y9u_A 268 TLYAQA 273 (323)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766543
No 23
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.53 E-value=1.4e-14 Score=123.66 Aligned_cols=130 Identities=12% Similarity=0.165 Sum_probs=99.2
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHH-----HH-----Hcc--HHHHHHHHHHhccccceeccch---hhhhhhcC
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGT-----QA-----AAG--RIAVQQNLALLGNQVRLFDRTH---YLKVFGIG 68 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~-----al-----~~g--~~~a~~~L~~l~~~v~~~~~~~---~~~~~~~G 68 (215)
.+|+||+||+++++ ||++.++.....+. .+ ..| .+++.++|.++++++..+.++. ..+.+.+|
T Consensus 107 ~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~G 184 (310)
T 1sbp_A 107 KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAEDFVKALFKNVEVLDSGARGSTNTFVERG 184 (310)
T ss_dssp TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTEEECCSSHHHHHHHHHTSC
T ss_pred CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccCCccHHHHHHHHhCC
Confidence 46899999999987 78887643222211 11 122 5678899999988876665432 45678999
Q ss_pred cEEEEEechhcHHHHHHc-C-CCeEEEecCCCceeeeceEEEeCCC----CCcccccCCCCCCChHHHHHHHHHHHcHHH
Q 040870 69 DVWIAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAAS----RLETKQIGGRVRGPFPLIHQWIEFCLQTAR 142 (215)
Q Consensus 69 ev~ia~~w~~~~~~~~~~-~-~~v~~v~P~eG~~~~~d~~~I~k~a----~~~~~~~~~~~~~~~~~A~~FInf~lspe~ 142 (215)
+++++++|++++.....+ + .++.+++|++|. .+.++++|++++ +|++ +|++||+|++||+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~-~~~~~~~i~~~~~~~s~~~~------------~A~~fi~fl~s~e~ 251 (310)
T 1sbp_A 185 IGDVLIAWENEALLATNELGKDKFEIVTPSESI-LAEPTVSVVDKVVEKKDTKA------------VAEAYLKYLYSPEG 251 (310)
T ss_dssp CCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEE-CBCCEEEECHHHHHHHTCHH------------HHHHHHHGGGSHHH
T ss_pred CccEEEeechHHHHHHHhcCCCceEEEccCCce-eccCCeEEeccccccccCHH------------HHHHHHHHHcChHH
Confidence 999999999988776655 5 789999998776 466789999977 8987 89999999999999
Q ss_pred hCCCCC
Q 040870 143 ALPFNT 148 (215)
Q Consensus 143 ~~~~~~ 148 (215)
|..+..
T Consensus 252 q~~~~~ 257 (310)
T 1sbp_A 252 QEIAAK 257 (310)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865543
No 24
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.37 E-value=1.2e-12 Score=107.57 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=83.4
Q ss_pred CCCCCChhhhcCccCCCceeeecChh-------HHHHHHHH-ccHHHHHHHHHHhccccceeccc--hhhhhhhcCcEEE
Q 040870 3 ENGFKDWKDLWLPELAGRISMVNSPR-------EVIGTQAA-AGRIAVQQNLALLGNQVRLFDRT--HYLKVFGIGDVWI 72 (215)
Q Consensus 3 ~~~p~sW~dL~dp~~~Gri~~~d~~~-------~~~~~al~-~g~~~a~~~L~~l~~~v~~~~~~--~~~~~~~~Gev~i 72 (215)
+..|+||+||++|++ ||++.|+.. ..+...+. .+ ..+.+.++++++..+..+ +..+.+.+|++++
T Consensus 92 ~~~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 166 (237)
T 2hxw_A 92 PLKIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIGRTQ---DIKTIQNFRNNIVAFVPNSGSARKLFAQDQADA 166 (237)
T ss_dssp TTCCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHHTTC---CHHHHHHHHHTEEEECCCCTTC--CTTTTTCSE
T ss_pred CCCCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHHHcc---CHHHHHHHhhceEEEcCCHHHHHHHHHcCCeeE
Confidence 446799999999987 799987521 11111111 12 245677888888656443 4455689999999
Q ss_pred EEechhcHHHHHHcCCCeEEEecCCCce-eeec-eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 73 AVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWAD-LWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 73 a~~w~~~~~~~~~~~~~v~~v~P~eG~~-~~~d-~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
|+.|++++.. +.+..+++|.+|.. .+.+ +++|++++ ++ +|++||||++||+.|..+.
T Consensus 167 g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~------------~A~~Fi~fl~s~e~q~~~~ 225 (237)
T 2hxw_A 167 WITWIDWSKS----NPDIGTAVAIEKDLVVYRTFNVIAKEGA--SK------------ETQDFIAYLSSKEAKEIFK 225 (237)
T ss_dssp EEEEHHHHHH----STTSSEEEECCTTTCCEEEEEEEECTTC--CH------------HHHHHHHHTTSHHHHHHHH
T ss_pred EEEechhhhc----CCCceEEEecCCceeEEeeeeEEEccCC--hH------------HHHHHHHHHcCHHHHHHHH
Confidence 9999987643 23455677766653 3443 78999988 55 8999999999999986543
No 25
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=99.31 E-value=1e-11 Score=106.60 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCCChhhhc-CccCCCceeeecChhHHHHHHH-----Hcc----HHHHHHHHHHh------------------------c
Q 040870 5 GFKDWKDLW-LPELAGRISMVNSPREVIGTQA-----AAG----RIAVQQNLALL------------------------G 50 (215)
Q Consensus 5 ~p~sW~dL~-dp~~~Gri~~~d~~~~~~~~al-----~~g----~~~a~~~L~~l------------------------~ 50 (215)
+|+||.||+ +| ++||++.|+..+..|... ..+ ....++.|... +
T Consensus 102 ~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 179 (296)
T 3cfx_A 102 NTDNWYEILRRP--DVRYGFSNPNDDPAGYRSQMVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEIS 179 (296)
T ss_dssp CTTTHHHHHHST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGGGSSCEEEECTTSCEEEECCCGGGCC
T ss_pred CcccHHHHhCCC--CeEEEEeCCCCCCCcHHHHHHHHHHHHhhcCccHHHHHhhcccccccccccCCccccccccccccc
Confidence 468999955 67 579999987655555321 111 11223444322 1
Q ss_pred cc---cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeE-EEecCCCc-------------------------e
Q 040870 51 NQ---VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVA-VVVPKSGA-------------------------S 100 (215)
Q Consensus 51 ~~---v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~-~v~P~eG~-------------------------~ 100 (215)
++ +....+ .+..+.+.+|++++++.|.+++... + +. +.+|+++. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~--~~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~ 254 (296)
T 3cfx_A 180 PNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGS 254 (296)
T ss_dssp CCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHHHHHH---T--CEEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECC
T ss_pred ccccceeecccHHHHHHHHHcCCCCEEEeehhhHhhC---C--CCEEECChhhcccCccccccccceeeeccCCccccCC
Confidence 11 222222 4677889999999999999888653 2 33 34788862 2
Q ss_pred eeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 101 LWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 101 ~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
.+.++++|+++++|++ +|++|||||+||+.|.-+
T Consensus 255 ~i~~~~~i~k~a~~~~------------~A~~Fi~fllS~e~q~i~ 288 (296)
T 3cfx_A 255 PIVYGVTIPNNAENSE------------LATEFVALLLGETGQQIF 288 (296)
T ss_dssp CCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHH
T ss_pred ceEEEEEeecCCCCHH------------HHHHHHHHHhChHHHHHH
Confidence 2468999999999998 899999999999998543
No 26
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=99.31 E-value=1.1e-11 Score=106.32 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCChhhhc-CccCCCceeeecChhHHHHHH----H-Hcc----HHHHHHHHHHh-----------------------cc
Q 040870 5 GFKDWKDLW-LPELAGRISMVNSPREVIGTQ----A-AAG----RIAVQQNLALL-----------------------GN 51 (215)
Q Consensus 5 ~p~sW~dL~-dp~~~Gri~~~d~~~~~~~~a----l-~~g----~~~a~~~L~~l-----------------------~~ 51 (215)
+|+||.||+ +| ++||++.|+.....|.. + ..+ ....++.|... ++
T Consensus 102 ~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 179 (295)
T 3cij_A 102 NSQNWYEILKRP--DVRFGFSNPNDDPCGYRSLMAIQLAELYYNDPTIFDELVAKNSNLRFSEDNGSYVLRMPSSERIEI 179 (295)
T ss_dssp CTTTHHHHHTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTCTTHHHHHTGGGBSCCEEEETTEEEEECCCGGGCCB
T ss_pred CcccHHHHhcCC--CcEEEEeCCCcCCccHHHHHHHHHHHHhccCCcHHHHHhhccccccccccCCcccccccccccccc
Confidence 468999965 66 58999998765444432 1 111 11123444322 11
Q ss_pred ---ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCce-------------------------ee
Q 040870 52 ---QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGAS-------------------------LW 102 (215)
Q Consensus 52 ---~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~-------------------------~~ 102 (215)
++....+ .+..+.+.+||+++++.|.+++... +.++ +.+|+++.. ..
T Consensus 180 ~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~---~~~~-~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i 255 (295)
T 3cij_A 180 NKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH---GFNF-VELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPI 255 (295)
T ss_dssp CTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHHHHT---TCEE-EECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCC
T ss_pred cccceeecccHHHHHHHHhCCCCCEEEEEeehhhhC---CCCE-EECchhhccCCccccccccceEEeccCCccccCCce
Confidence 1222223 3677889999999999999888652 3222 468998731 24
Q ss_pred eceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 103 ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 103 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
.++++|+++++|++ +|++|||||+||+.|.-+
T Consensus 256 ~~~~~i~k~a~~~~------------~A~~Fi~fl~S~e~q~i~ 287 (295)
T 3cij_A 256 VYGITIPKNAENRE------------LAVEFVKLVISEEGQEIL 287 (295)
T ss_dssp EEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHHH
T ss_pred EEEEEeecCCCCHH------------HHHHHHHHHhChhHHHHH
Confidence 68999999999998 899999999999998543
No 27
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.24 E-value=2e-11 Score=101.84 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHHHHhccccceecc--chhhhhhhcCcEEEEEechhcHHHH
Q 040870 6 FKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVGWSSDVLPA 83 (215)
Q Consensus 6 p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~w~~~~~~~ 83 (215)
+++|.+|+++ +||++.|+...-.|.....-++. ...+.++++++. +.. .+..+.+.+||+++++.|.+++..
T Consensus 107 ~~~l~~l~~~---~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~-~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~- 180 (237)
T 3r26_A 107 KTNWTSLLNG---GRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLA-PAEDVRGALALVERNEAPLGIVYGSDAVA- 180 (237)
T ss_dssp TCCHHHHHTT---CCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEE-EESSHHHHHHHHHTTSSSEEEEEHHHHHH-
T ss_pred hHhHHHhcCC---CeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEE-ecCCHHHHHHHHHcCCCCEEEEEeccccc-
Confidence 5689998874 79999987554455431100000 012345567763 433 356788999999999999988764
Q ss_pred HHcCCCeEE--EecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 84 VKRMSNVAV--VVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 84 ~~~~~~v~~--v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
..++.+ .+|+++...+...++|+++++| + .|++||+|++||+.|.-+
T Consensus 181 ---~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~------------~A~~Fi~fl~S~eaq~i~ 229 (237)
T 3r26_A 181 ---SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-A------------TVKAFYDYLKGPQAAEIF 229 (237)
T ss_dssp ---CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-H------------HHHHHHHHHTSHHHHHHH
T ss_pred ---CCCCeEEEECCcccCCeeeeeEEEEcCCCC-H------------HHHHHHHHHcCHHHHHHH
Confidence 234555 5999999888899999999999 5 799999999999987543
No 28
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=99.09 E-value=4e-10 Score=96.43 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=78.1
Q ss_pred CCCChhhhc-CccCCCceeeecChhHHHHHH----H-Hcc----HHHHHHHHHHhcc-----------------------
Q 040870 5 GFKDWKDLW-LPELAGRISMVNSPREVIGTQ----A-AAG----RIAVQQNLALLGN----------------------- 51 (215)
Q Consensus 5 ~p~sW~dL~-dp~~~Gri~~~d~~~~~~~~a----l-~~g----~~~a~~~L~~l~~----------------------- 51 (215)
.|+||.||+ +| ++||++.|+..+..|.. + ..+ ....++.|.....
T Consensus 102 ~~~~w~dll~~p--~~~I~~~dp~~~~~G~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~g~~~~~~~~~l~~~~ 179 (292)
T 3cfz_A 102 NSTNWYKILQRP--DVKIGFSNPNDDPCGYRTQMVLQLAELYYKDPTIYDNLVLKHSNIKVEENNGTYLILVPKELDVDT 179 (292)
T ss_dssp CTTTHHHHTTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHHTCTTHHHHHTGGGBSCEEEEETTEEEEEECSSCCBCT
T ss_pred CcccHHHHhcCC--CcEEEeCCCCCCCCcHHHHHHHHHHHHhccCCcHHHHHhcccccccccccCCcccccccccccccc
Confidence 468999966 66 58999998765555532 1 111 0113344432200
Q ss_pred -ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEE-EecCCCc--------------------------eee
Q 040870 52 -QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAV-VVPKSGA--------------------------SLW 102 (215)
Q Consensus 52 -~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~-v~P~eG~--------------------------~~~ 102 (215)
++....+ .+..+.+.+|++++++.|.+++.. .+ +.+ .+|+++. ..+
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (292)
T 3cfz_A 180 NKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ---HH--LKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPI 254 (292)
T ss_dssp TTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH---TT--CEEECCCTTTSSCCGGGHHHHTTEEEEEGGGTEEEECCCC
T ss_pred cceeecccHHHHHHHHHCCCCCEEEEEehhhhh---CC--CCEEECChhhcccCccccchhhceeeeeccccccccCCce
Confidence 2222222 366788999999999999988764 22 333 3677642 125
Q ss_pred eceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 103 ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 103 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
.++++|+++++|++ +|++||+||+ +.|.
T Consensus 255 ~~~~~i~k~a~~~~------------~A~~Fi~fl~--e~q~ 282 (292)
T 3cfz_A 255 VYGMTVPTNAPHKK------------EAIEFVKFVL--GHPE 282 (292)
T ss_dssp EEEEECCTTCTTHH------------HHHHHHHHHH--HCTH
T ss_pred eEEEEeecCCCCHH------------HHHHHHHHHH--HHHH
Confidence 78999999999998 8999999999 6654
No 29
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=99.06 E-value=4.7e-10 Score=95.08 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=83.6
Q ss_pred CCCCC--hhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHHHHhccccceecc--chhhhhhhcCcEEEEEechhc
Q 040870 4 NGFKD--WKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRLFDR--THYLKVFGIGDVWIAVGWSSD 79 (215)
Q Consensus 4 ~~p~s--W~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~v~~~~~--~~~~~~~~~Gev~ia~~w~~~ 79 (215)
..++| |.++..+ .+||++.|+...-.|.+...-++. ...+.++++++ .+.. .+..+.+.+||+++++.|..+
T Consensus 118 ~~i~~~dl~~l~~~--~~~iai~dP~~~p~G~~a~~~l~~-~g~~~~l~~~~-v~~~~~~~~~~~v~~Gead~giv~~s~ 193 (253)
T 3gzg_A 118 DPRAPGAIAKALGE--NGRLAVGQTASVPAGSYAAAALRK-LGQWDSVSNRL-AESESVRAALMLVSRGEAPLGIVYGSD 193 (253)
T ss_dssp CTTSTTHHHHHTTT--TCCEEEECTTTSHHHHHHHHHHHH-TTCHHHHTTSE-EEESSHHHHHHHHHTTSSSEEEEEHHH
T ss_pred CCCCHHHHHHhhcC--CCEEEEeCCCCCchHHHHHHHHHH-cCcHHHHhhce-eecCCHHHHHHHHHcCCCCEEEEEhhc
Confidence 34677 5555433 489999986544444431100000 01234556676 3433 356678999999999999988
Q ss_pred HHHHHHcCCCeEEE--ecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 80 VLPAVKRMSNVAVV--VPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 80 ~~~~~~~~~~v~~v--~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
+.. ..++.++ +|+++.......++|++++ |++ +|++||+|++||+.|.-+
T Consensus 194 a~~----~~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~------------~A~~Fi~fl~S~eaq~i~ 245 (253)
T 3gzg_A 194 ARA----DAKVRVVATFPDDSHDAIVYPVAALKNS-NNP------------ATAAFVSWLGSKPAKAIF 245 (253)
T ss_dssp HHH----CTTEEEEEECCGGGSCCEEEEEEECTTC-CCT------------THHHHHHHTTSHHHHHHH
T ss_pred ccc----CCCceEEEECCcccCceeEEEEEEECCC-ChH------------HHHHHHHHHcCHHHHHHH
Confidence 762 3446665 8999998888999999998 666 799999999999987543
No 30
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.03 E-value=2.3e-10 Score=91.87 Aligned_cols=123 Identities=10% Similarity=0.021 Sum_probs=84.3
Q ss_pred CChhhhcCccCCCceeeecChhHHHHHHH-----HccHHHHHHHHHHhccccceecc-chhhhhhhcCcEEEEEechhcH
Q 040870 7 KDWKDLWLPELAGRISMVNSPREVIGTQA-----AAGRIAVQQNLALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSDV 80 (215)
Q Consensus 7 ~sW~dL~dp~~~Gri~~~d~~~~~~~~al-----~~g~~~a~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~ 80 (215)
.||+||.++.+ |++.+.+......+... ..|+. ..+ ++++++....+ ....+.+++|++++++.|.+.+
T Consensus 94 ~~~~dL~~~~~-~~i~~~~~~~~~~~~~~~~~l~~~g~~---~~~-~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~~~~ 168 (231)
T 1atg_A 94 NQGKVLAGNGW-RHIAISNPQIAPYGLAGTQVLTHLGLL---DKL-TAQERIVEANSVGQAHSQTASGAADLGFVALAQI 168 (231)
T ss_dssp TTSGGGGSSSC-SCEEEECTTTCHHHHHHHHHHHHTTCH---HHH-HHTTCEEEESSHHHHHHHHHTTSSSEEEEEGGGT
T ss_pred cchhhhccCCC-CEEEecCCCCCchhHHHHHHHHHCCCc---ccc-cccceEEecCCHHHHHHHHHcCCCCEEEEEHHHh
Confidence 58999999886 79999875423333321 12211 110 14555543333 3567889999999999998865
Q ss_pred HHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 81 LPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 81 ~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
......+..+.+.+|.+|.......++|++++++++ .|++||+|+++++.|..+
T Consensus 169 ~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~------------~a~~fi~~l~s~~~q~~~ 222 (231)
T 1atg_A 169 IQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKA------------NAEQFMSWMKGPKAVAII 222 (231)
T ss_dssp CCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHH
T ss_pred hhccccccCeEEEeCcccCccceEeEEEecCCCChH------------HHHHHHHHHcCHHHHHHH
Confidence 422222235778899988766667899999999987 899999999999987543
No 31
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=98.83 E-value=1.5e-08 Score=89.59 Aligned_cols=101 Identities=10% Similarity=0.039 Sum_probs=73.6
Q ss_pred HHHHHHHHhccc------cceeccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC--CC-----ceeeeceE
Q 040870 41 AVQQNLALLGNQ------VRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK--SG-----ASLWADLW 106 (215)
Q Consensus 41 ~a~~~L~~l~~~------v~~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~--eG-----~~~~~d~~ 106 (215)
++.+++.++... ...++.++..+.|.+|++.+.+.|+.........+.++.++ +|. +| ...+..++
T Consensus 224 ~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 303 (414)
T 3quf_A 224 PVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSGNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGF 303 (414)
T ss_dssp HHHHHHHHHHHTTSSCGGGTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECBCBSSCTTCCBEEEEESCEE
T ss_pred HHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHcCCceEEEcCcccHHHHhhhccceeEEecCCcCCCCccceecccCccE
Confidence 455666665432 11222235678899999999999988887777777888888 674 34 23456789
Q ss_pred EEeCCCC--CcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCCCh
Q 040870 107 AIPAASR--LETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKLP 153 (215)
Q Consensus 107 ~I~k~a~--~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~~~ 153 (215)
+|+++++ |++ +|.+||+|+++||.|..+....++.
T Consensus 304 ~I~~~s~~~~~e------------~A~~fl~~l~s~e~~~~~~~~~g~~ 340 (414)
T 3quf_A 304 AIASRASDKEKA------------AAKKFLAYLNSEEGLEAFTSAAGTL 340 (414)
T ss_dssp EEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHHHHTCE
T ss_pred EEECCCCccCHH------------HHHHHHHHHcCHHHHHHHHHhcCCC
Confidence 9999999 988 8999999999999987665433333
No 32
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=98.78 E-value=1.2e-08 Score=96.75 Aligned_cols=100 Identities=18% Similarity=0.037 Sum_probs=75.2
Q ss_pred HHHHHHHHHhccc-cceec--cchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeC
Q 040870 40 IAVQQNLALLGNQ-VRLFD--RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 110 (215)
Q Consensus 40 ~~a~~~L~~l~~~-v~~~~--~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k 110 (215)
.++.+++.++..+ ....+ .++..+.|.+|++.+.+.|+.........+.++.++ +|. .++..+.++++|++
T Consensus 189 ~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~ 268 (637)
T 4dxb_A 189 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 268 (637)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEcCCCCCCCCceEeeeeEEEEEC
Confidence 3566777766543 21111 135667899999999999988877777778888877 663 35567889999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCCCCC
Q 040870 111 ASRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNTRVK 151 (215)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~~~~ 151 (215)
+|+|++ +|.+||+ ||+|||+|..+....+
T Consensus 269 ~Skn~e------------aA~~Fl~~fl~s~E~q~~~~~~~g 298 (637)
T 4dxb_A 269 ASPNKE------------LAKEFLENYLLTDEGLEAVNKDKP 298 (637)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHHHSC
T ss_pred CCCCHH------------HHHHHHHHHhCCHHHHHHHHHhCC
Confidence 999998 8999995 8999999976655444
No 33
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=98.77 E-value=2.2e-08 Score=87.88 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=91.5
Q ss_pred CCCCChhhhcC--ccCC-----CceeeecChhHHHH---HHH-Hcc---------------------HHHHHHHHHHhcc
Q 040870 4 NGFKDWKDLWL--PELA-----GRISMVNSPREVIG---TQA-AAG---------------------RIAVQQNLALLGN 51 (215)
Q Consensus 4 ~~p~sW~dL~d--p~~~-----Gri~~~d~~~~~~~---~al-~~g---------------------~~~a~~~L~~l~~ 51 (215)
++|+||++|++ .+++ |++.+..+....+. +.. .+| ..++.+++.++.+
T Consensus 122 ~~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~ 201 (382)
T 2gha_A 122 EPPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVD 201 (382)
T ss_dssp SCCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCCCeeeccCCCCccccccccCCHHHHHHHHHHHHHHH
Confidence 36899999998 4554 77776644332221 111 111 1356677777754
Q ss_pred c-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC--CCc----eeeeceEEEeCCCCCcccccCC
Q 040870 52 Q-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK--SGA----SLWADLWAIPAASRLETKQIGG 121 (215)
Q Consensus 52 ~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~--eG~----~~~~d~~~I~k~a~~~~~~~~~ 121 (215)
+ +.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +|. ..+.++++|+++++|++
T Consensus 202 ~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e----- 276 (382)
T 2gha_A 202 EGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKL----- 276 (382)
T ss_dssp TTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBSBTTBCCCCEEEEEEEEEBTTCTTHH-----
T ss_pred cCCCCCCCCHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEEeCCCCCCCCCCcccccceEEEEeCCCCCHH-----
Confidence 3 211 12235667899999999998776665555556789988 887 563 45778999999999998
Q ss_pred CCCCChHHHHHHH-HHHHcHHHhCCCCC
Q 040870 122 RVRGPFPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 122 ~~~~~~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 277 -------~A~~fi~~~l~s~e~~~~~~~ 297 (382)
T 2gha_A 277 -------LAIEFLTSFIAKKETMYRIYL 297 (382)
T ss_dssp -------HHHHHHHHTTTSHHHHHHHHH
T ss_pred -------HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999866543
No 34
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=98.68 E-value=6e-08 Score=92.57 Aligned_cols=134 Identities=21% Similarity=0.128 Sum_probs=95.1
Q ss_pred CCCCChhhhcCc--cC--CCceeeecChhHH---HHHHHH-c---------------------cHHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWLP--EL--AGRISMVNSPREV---IGTQAA-A---------------------GRIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~dp--~~--~Gri~~~d~~~~~---~~~al~-~---------------------g~~~a~~~L~~l~~~-v 53 (215)
.+|+||++|++. ++ +|+..+.-..... +.+... + ...++.+++.++..+ +
T Consensus 160 e~P~TWdEL~~~akklk~~G~~~~~~~~~~~~~~~~~l~~~Gg~~~~~~~~~~d~~~~~~d~~~~~~ale~l~~L~~~g~ 239 (653)
T 3osr_A 160 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 239 (653)
T ss_dssp SCCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCceeEeccCchHHHHHHHHHcCCeeeeccCcccccCccccCCHHHHHHHHHHHHHHHcCC
Confidence 478999999985 22 4666554322221 112111 1 123567777777543 2
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|. .++..+.++++|+++++|++
T Consensus 240 ~~~~~~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~~aI~k~Skn~e--------- 310 (653)
T 3osr_A 240 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 310 (653)
T ss_dssp SCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH---------
T ss_pred CCCCCChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEEEEEECCCCCHH---------
Confidence 11 12235678899999999999999888887778889998 786 46678889999999999998
Q ss_pred ChHHHHHHHH-HHHcHHHhCCCCCC
Q 040870 126 PFPLIHQWIE-FCLQTARALPFNTR 149 (215)
Q Consensus 126 ~~~~A~~FIn-f~lspe~~~~~~~~ 149 (215)
+|.+||+ |+++||.|..++..
T Consensus 311 ---aA~~FI~nfl~S~E~q~~~a~~ 332 (653)
T 3osr_A 311 ---LAKEFLENYLLTDEGLEAVNKD 332 (653)
T ss_dssp ---HHHHHHHHTTSSHHHHHHHHHH
T ss_pred ---HHHHHHHHHccCHHHHHHHHHh
Confidence 8999996 99999998766543
No 35
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=98.68 E-value=9.6e-08 Score=84.77 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=70.6
Q ss_pred HHHHHHHHhc----cccce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC--C----ceeeeceEE
Q 040870 41 AVQQNLALLG----NQVRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS--G----ASLWADLWA 107 (215)
Q Consensus 41 ~a~~~L~~l~----~~v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e--G----~~~~~d~~~ 107 (215)
++.+++.++. +.+.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|.. | +.....+++
T Consensus 224 ~al~~~~~l~~g~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~ 303 (416)
T 2xd3_A 224 VGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQAFKDAKVNYGVATIPTLPNGKEYAAFGGGKAWV 303 (416)
T ss_dssp HHHHHHHHHHTTSCGGGGCSSCHHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCBCTTSCCCCCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCccccccccHHHHHHHHhcCCeEEEecCcchhhhHHhcCCceEEEeCCCCCCCCcccccccceEEE
Confidence 5666777764 22222 12235567899999999998877666555557789988 7863 4 345677899
Q ss_pred EeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 108 IPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 108 I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
|+++++|++ +|.+||+|+++++.|..+..
T Consensus 304 I~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~ 332 (416)
T 2xd3_A 304 IPQAVKNLE------------ASQKFVDFLVATEQQKVLYD 332 (416)
T ss_dssp CBTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred EeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 999999998 89999999999998865543
No 36
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=98.67 E-value=1.4e-07 Score=85.11 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=89.6
Q ss_pred CCCCChhhhcCc--cC-----CCceeeec---ChhHHHHHHHH-c----------------cHHHHHHHHHHhccc-cce
Q 040870 4 NGFKDWKDLWLP--EL-----AGRISMVN---SPREVIGTQAA-A----------------GRIAVQQNLALLGNQ-VRL 55 (215)
Q Consensus 4 ~~p~sW~dL~dp--~~-----~Gri~~~d---~~~~~~~~al~-~----------------g~~~a~~~L~~l~~~-v~~ 55 (215)
.+|+||++|.+. ++ .|...+.- .....+.+... + ...++.+++.++... +..
T Consensus 161 ~~P~Twdel~~~~~~l~~~~g~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~ 240 (458)
T 3uor_A 161 QMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAP 240 (458)
T ss_dssp SCCCBHHHHHHHHHHHHHHHCTTSEEEECCTTCCHHHHHHHHTSSSCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhcccCCCceeEecCchhHHHHHHHHHHcCCeEEcCCCCeeecCCHHHHHHHHHHHHHHHcCCCC
Confidence 578999999983 22 35555542 22222222221 0 123566777666532 111
Q ss_pred --e--ccchhhhhhhcCcEEEEEechhcHHHHHHcCC-----CeEEE-ecC----CCceeeeceEEEeCCCCCcccccCC
Q 040870 56 --F--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMS-----NVAVV-VPK----SGASLWADLWAIPAASRLETKQIGG 121 (215)
Q Consensus 56 --~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~-----~v~~v-~P~----eG~~~~~d~~~I~k~a~~~~~~~~~ 121 (215)
. ..++..+.|.+|++.+.+.++.........++ ++.++ +|. .++..+.++++|+++++|++
T Consensus 241 ~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e----- 315 (458)
T 3uor_A 241 KVSETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKD----- 315 (458)
T ss_dssp CCCGGGSSCHHHHHHHTSEEEEEECTHHHHHHHHHCCGGGTTSEEEECCBBSSSBCCCBCEEEEEEEBTTCSCHH-----
T ss_pred CcccccchHHHHHHhcCCEEEEEcCcchHHHHhhhCcccccceEEEEeCCCCCCCCccccCceEEEEECCCCCHH-----
Confidence 1 12245788999999999998877766655443 68888 787 56778889999999999998
Q ss_pred CCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 122 RVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 122 ~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
+|.+||+|+++||.|..+.
T Consensus 316 -------aA~~fl~~l~s~e~q~~~~ 334 (458)
T 3uor_A 316 -------ASWKLIEYLSQPQVQARFH 334 (458)
T ss_dssp -------HHHHHHHHHTSHHHHHHHH
T ss_pred -------HHHHHHHHHcCHHHHHHHH
Confidence 8999999999999986554
No 37
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=98.64 E-value=8.3e-08 Score=84.71 Aligned_cols=131 Identities=10% Similarity=0.013 Sum_probs=88.7
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHH---HHH-Hc---------------------cHHHHHHHHHHhcc--ccce-
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIG---TQA-AA---------------------GRIAVQQNLALLGN--QVRL- 55 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~---~al-~~---------------------g~~~a~~~L~~l~~--~v~~- 55 (215)
++|+||++|++ + +|++.+.......+. +.. .+ ...++.+++.++.. .+..
T Consensus 154 ~~P~Twdel~~-~-~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~g~~~~ 231 (402)
T 1urs_A 154 QPPQTWAEFVK-D-ANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTP 231 (402)
T ss_dssp SCCCSHHHHHH-H-HHHHCEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCT
T ss_pred cCCCCHHHHHh-c-cCcceeeecCCChhhHHHHHHhcCCeeecCCccccccCccccCCHHHHHHHHHHHHHHHhcCcCCC
Confidence 36899999999 5 666655533322211 111 11 12356667777643 2221
Q ss_pred -eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC--C----ceeeeceEEEeCCCCCcccccCCCCCCCh
Q 040870 56 -FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS--G----ASLWADLWAIPAASRLETKQIGGRVRGPF 127 (215)
Q Consensus 56 -~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e--G----~~~~~d~~~I~k~a~~~~~~~~~~~~~~~ 127 (215)
...++..+.|.+|++.+.+.++.........+.++.++ +|.. | +....++++|+++++|++
T Consensus 232 ~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e----------- 300 (402)
T 1urs_A 232 STNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQA----------- 300 (402)
T ss_dssp TCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEEBTTCSCHH-----------
T ss_pred CCCchhhHHHHhcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCccceecceEEEEeCCCCCHH-----------
Confidence 11235668899999999998877666555556789998 7862 4 345678899999999998
Q ss_pred HHHHHHHHHHHcHHHhCCCCC
Q 040870 128 PLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 128 ~~A~~FInf~lspe~~~~~~~ 148 (215)
+|.+||+|+++|+.|..+..
T Consensus 301 -~A~~fl~~l~s~e~~~~~~~ 320 (402)
T 1urs_A 301 -ADWSLVQALTSAQAQQMYFR 320 (402)
T ss_dssp -HHHHHHHHHTSHHHHHHHHH
T ss_pred -HHHHHHHHHcCHHHHHHHHh
Confidence 89999999999998865543
No 38
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=98.64 E-value=1.7e-07 Score=82.41 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=89.1
Q ss_pred CCCCChhhhcC--ccCC----CceeeecChhHHHH---HHH-Hc---------------------cHHHHHHHHHHhccc
Q 040870 4 NGFKDWKDLWL--PELA----GRISMVNSPREVIG---TQA-AA---------------------GRIAVQQNLALLGNQ 52 (215)
Q Consensus 4 ~~p~sW~dL~d--p~~~----Gri~~~d~~~~~~~---~al-~~---------------------g~~~a~~~L~~l~~~ 52 (215)
++|+||++|++ .+++ |++.+.......+. +.. .+ ...++.+++.++..+
T Consensus 142 ~~P~Twdel~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 221 (397)
T 2zyo_A 142 QVPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTE 221 (397)
T ss_dssp SCCSBHHHHHHHHHHHCBGGGTBEEEEECTTCHHHHHHHHHHTTCCSEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhcCCCCeeeEEEecCcHHHHHHHHHhcCCeEEccCccCCCcCCcccCCHHHHHHHHHHHHHHhC
Confidence 36899999998 5666 77766533222211 111 11 013566677666532
Q ss_pred -cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CCc----eeeeceEEEeCCCCCcccccCCCC
Q 040870 53 -VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SGA----SLWADLWAIPAASRLETKQIGGRV 123 (215)
Q Consensus 53 -v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG~----~~~~d~~~I~k~a~~~~~~~~~~~ 123 (215)
+.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +|. .....+++|+++++|++
T Consensus 222 g~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------- 294 (397)
T 2zyo_A 222 ARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQAAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPK------- 294 (397)
T ss_dssp SCCCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEETTCSCHH-------
T ss_pred CCCCCCCChHHHHHHHhcCCeeEEEcCCccHHHHHhcCcceEEEecCCCCCCCCcceecceEEEEeCCCCCHH-------
Confidence 211 11234567899999999998877666655556789988 787 443 34567899999999998
Q ss_pred CCChHHHHHHHHHHHcHHHhCCCC
Q 040870 124 RGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 124 ~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
+|.+||+|+++++.|..+.
T Consensus 295 -----~A~~fi~~l~s~e~~~~~~ 313 (397)
T 2zyo_A 295 -----YATELMQFLTSKEALASRF 313 (397)
T ss_dssp -----HHHHHHHHTTSHHHHHHHH
T ss_pred -----HHHHHHHHHcCHHHHHHHH
Confidence 8999999999999886543
No 39
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=98.62 E-value=2.8e-08 Score=87.92 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccc-cce----eccchhhhhhhcCcEEEEEechhcHHHHHHc-----CCCeEEE-ecCC----Cceeeec
Q 040870 40 IAVQQNLALLGNQ-VRL----FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR-----MSNVAVV-VPKS----GASLWAD 104 (215)
Q Consensus 40 ~~a~~~L~~l~~~-v~~----~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~-----~~~v~~v-~P~e----G~~~~~d 104 (215)
.++.+++.++... +.. .+.++..+.|.+|++.+.+.++......... +.++.++ +|.. ++..+.+
T Consensus 219 ~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~ 298 (412)
T 3k01_A 219 VRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGW 298 (412)
T ss_dssp HHHHHHHHHHHHTTSEECCSSCHHHHHHHHHHHTSEEEEEECGGGHHHHHTSTTCSSGGGEEEEECCBCSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCcccchhhHHHHHhcCCEEEEECCccchHhhhhccccCccceeEEEeCCCCCCCCccccCce
Confidence 3566777766543 111 1223567889999999999976655544432 2247777 5642 2677888
Q ss_pred eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 105 LWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 105 ~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+++|+++++|++ +|.+||+|+++||.|..+..
T Consensus 299 ~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~ 330 (412)
T 3k01_A 299 NLSVYAGSKNLD------------ASYAFVKYMSSAKVQQQTTE 330 (412)
T ss_dssp EEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred eEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 999999999998 99999999999999866543
No 40
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.60 E-value=3.6e-08 Score=89.62 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=89.9
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc---------------------cHHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA---------------------GRIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~---------------------g~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ ++++ |++.+..+....+ .+.. .+ ...++.+++.++... +.
T Consensus 125 ~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~ 204 (487)
T 1hsj_A 125 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 204 (487)
T ss_dssp CCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHHHHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHhcCCcceeeecCCchHHHHHHHHhcCCeecccccccccccccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 6899999998 5665 7777654332221 1111 11 013566777766532 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|+++++|++
T Consensus 205 ~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e---------- 274 (487)
T 1hsj_A 205 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 274 (487)
T ss_dssp CTTCCHHHHHHHHHTSSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBSSCSCHH----------
T ss_pred CCCCCchhHHHHHHcCCeeEEecCCcchhhHHhcCCCeeEecCCCCCCCCCCccccceEEEEECCCCCHH----------
Confidence 1 11234568899999999988776665555567789888 786 33 345678999999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 275 --aA~~fl~~~l~s~e~~~~~~~ 295 (487)
T 1hsj_A 275 --LAKEFLENYLLTDEGLEAVNK 295 (487)
T ss_dssp --HHHHHHHHTTTSHHHHHHHHH
T ss_pred --HHHHHHHHHHcCHHHHHHHHH
Confidence 899999 99999999866543
No 41
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.58 E-value=1.6e-07 Score=83.43 Aligned_cols=133 Identities=19% Similarity=0.118 Sum_probs=90.0
Q ss_pred CCCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc----c-----------------HHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA----G-----------------RIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~----g-----------------~~~a~~~L~~l~~~-v 53 (215)
++|+||++|++ .+++ |++.+.......+ .+.. .+ + ..++.+++.++... +
T Consensus 124 ~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~ 203 (421)
T 1mh3_A 124 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 203 (421)
T ss_dssp SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHhcCCCCceeecCCchHHHHHHHHhcCCeeeccccCCCCccCccCCCHHHHHHHHHHHHHHhcCC
Confidence 36899999998 5554 7776654322221 1111 11 0 13566777766532 2
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| ...+.++++|+++++|++
T Consensus 204 ~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e--------- 274 (421)
T 1mh3_A 204 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 274 (421)
T ss_dssp SCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH---------
T ss_pred CCCCCCchhHHHHHHCCCeeEEEeCchhHHHHhhcCCCeeEEeCCCCCCCCCCccccceEEEEECCCCCHH---------
Confidence 11 11234568899999999998877666555567789888 786 22 345778999999999998
Q ss_pred ChHHHHHHH-HHHHcHHHhCCCCC
Q 040870 126 PFPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 126 ~~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 275 ---~A~~fi~~~l~s~e~~~~~~~ 295 (421)
T 1mh3_A 275 ---LAKEFLENYLLTDEGLEAVNK 295 (421)
T ss_dssp ---HHHHHHHHTTSSHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999865543
No 42
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=98.58 E-value=3.3e-08 Score=90.05 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc---------------------cHHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA---------------------GRIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~---------------------g~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ ++++ |++.+..+....+ .+.. .+ ...++.+++.++..+ +.
T Consensus 126 ~P~Twdel~~~a~kl~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~ 205 (463)
T 2xz3_A 126 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 205 (463)
T ss_dssp CCSBSTTHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCcceeEecCCccHHHHHHHHHcCCcEeccccccccccccccCCHHHHHHHHHHHHHHHcCCC
Confidence 6899999998 5554 7777654332221 1111 11 023566777776532 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|+++++|++
T Consensus 206 ~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e---------- 275 (463)
T 2xz3_A 206 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 275 (463)
T ss_dssp CTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH----------
T ss_pred CCCCCcchHHHHHHcCCeeEEecCccchhHHhhcCCCEEEEeCCCCCCCCCcccccceEEEEECCCCCHH----------
Confidence 1 11234568899999999988776665555557788888 786 34 345778999999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 276 --aA~~Fi~~~l~s~e~q~~~~~ 296 (463)
T 2xz3_A 276 --LAKEFLENYLLTDEGLEAVNK 296 (463)
T ss_dssp --HHHHHHHHTTSSHHHHHHHHH
T ss_pred --HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999866543
No 43
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=98.57 E-value=4.8e-08 Score=90.24 Aligned_cols=132 Identities=18% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc-----------c----------HHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA-----------G----------RIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~-----------g----------~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ .+++ |++.+..+....+ .+.. .+ + ..++.+++.++... +.
T Consensus 125 ~P~TwdEl~~~a~klk~~G~~g~~~~~~~~~~~~~~l~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~~L~~~g~~ 204 (494)
T 1y4c_A 125 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 204 (494)
T ss_dssp CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHhcCCceeccccccccccccccCCHHHHHHHHHHHHHHHCCCC
Confidence 6899999998 4554 7776653322221 1111 11 0 13566777766532 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|+++++|++
T Consensus 205 ~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~gv~p~P~~~g~~~~~~~g~~~~~I~~~skn~e---------- 274 (494)
T 1y4c_A 205 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 274 (494)
T ss_dssp CTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH----------
T ss_pred CCCCChhHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCccccccceEEEEECCCCCHH----------
Confidence 1 11234567899999999998877666555567789888 786 33 345778999999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.+..+..
T Consensus 275 --aA~~Fl~~fl~s~e~q~~~~~ 295 (494)
T 1y4c_A 275 --LAKEFLENYLLTDEGLEAVNK 295 (494)
T ss_dssp --HHHHHHHHTTSSHHHHHHHHH
T ss_pred --HHHHHHHHHHcCHHHHHHHHH
Confidence 899999 99999999866543
No 44
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=98.57 E-value=1.5e-07 Score=85.06 Aligned_cols=133 Identities=20% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc---------------------cHHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA---------------------GRIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~---------------------g~~~a~~~L~~l~~~-v 53 (215)
++|+||++|++ .+++ |++.+.......+ .+.. .+ ...++.+++.++... +
T Consensus 122 ~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~ 201 (461)
T 3csg_A 122 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 201 (461)
T ss_dssp SCCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTS
T ss_pred cCCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCCeEeecccCcccccccCcCCHHHHHHHHHHHHHHHcCC
Confidence 36899999998 5554 7776654332222 1111 11 023566777776532 2
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| ...+.++++|+++++|++
T Consensus 202 ~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e--------- 272 (461)
T 3csg_A 202 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 272 (461)
T ss_dssp SCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH---------
T ss_pred CCCCCCchhHHHHHhcCCeeEEecCcchHHHHHhcCCceEEEeCCCCCCCCCCceecceEEEEeCCCCCHH---------
Confidence 11 11235668899999999988776665555557789888 786 33 345678899999999998
Q ss_pred ChHHHHHHH-HHHHcHHHhCCCCC
Q 040870 126 PFPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 126 ~~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 273 ---~A~~fl~~~l~s~e~q~~~~~ 293 (461)
T 3csg_A 273 ---LAKEFLENYLLTDEGLEAVNK 293 (461)
T ss_dssp ---HHHHHHHHTTSSHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999866543
No 45
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=98.57 E-value=4.8e-08 Score=88.97 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=89.4
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hcc---------------------HHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AAG---------------------RIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~g---------------------~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ ++++ |++.+..+....+ .+.. .+| ..++.+++.++... +.
T Consensus 140 ~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~ 219 (477)
T 2vgq_A 140 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 219 (477)
T ss_dssp CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCcceeEecCCCchHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHCCCC
Confidence 6899999998 5665 8777654332221 1111 110 23566777666432 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.++++.........+.++.++ +|. +| +..+..+++|+++++|++
T Consensus 220 ~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e---------- 289 (477)
T 2vgq_A 220 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 289 (477)
T ss_dssp CTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH----------
T ss_pred CCCCCchHHHHHHHcCCeeEEecCCchHHHHhhcCCCeEEEeCCCCCCCCCcceecceEEEEECCCCCHH----------
Confidence 1 11135568899999999988776665555557788888 786 33 345678899999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 290 --aA~~fl~~~l~s~e~q~~~~~ 310 (477)
T 2vgq_A 290 --LAKEFLENYLLTDEGLEAVNK 310 (477)
T ss_dssp --HHHHHHHHTTSSHHHHHHHHH
T ss_pred --HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999866543
No 46
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=98.55 E-value=2.5e-07 Score=84.93 Aligned_cols=133 Identities=21% Similarity=0.134 Sum_probs=91.8
Q ss_pred CCCCChhhhcCc--cC--CCceeeecChhHHH---HHHHH-c---------------------cHHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWLP--EL--AGRISMVNSPREVI---GTQAA-A---------------------GRIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~dp--~~--~Gri~~~d~~~~~~---~~al~-~---------------------g~~~a~~~L~~l~~~-v 53 (215)
.+|+||++|++. ++ +|+..+.-.....+ .+... + ...++.+++.++..+ +
T Consensus 124 ~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~ 203 (500)
T 3ob4_A 124 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 203 (500)
T ss_dssp SCCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEEeecCccHHHHHHHHHhCCeeecccCCccccCCcccCCHHHHHHHHHHHHHHHcCC
Confidence 578999999985 22 46665542222211 12111 1 123567777777543 1
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|. .+...+.++++|+++++|++
T Consensus 204 ~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e--------- 274 (500)
T 3ob4_A 204 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 274 (500)
T ss_dssp SCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEETTCSCHH---------
T ss_pred CCCCCChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCCCCCccccccceEEEEECCCCCHH---------
Confidence 11 12235678899999999999998888777777788888 575 23467788999999999998
Q ss_pred ChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 126 PFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 126 ~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
+|.+||+ |+++++.+..+..
T Consensus 275 ---aA~~Fi~~~l~s~e~q~~~~~ 295 (500)
T 3ob4_A 275 ---LAKEFLENYLLTDEGLEAVNK 295 (500)
T ss_dssp ---HHHHHHHHTTTSHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCHHHHHHHHh
Confidence 8999995 9999999866543
No 47
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=98.54 E-value=3.2e-07 Score=81.36 Aligned_cols=137 Identities=9% Similarity=0.067 Sum_probs=88.5
Q ss_pred CCCCCChhhhcC------ccCCCceeeecChhHHHHH-HHH----------c--------------cHHHHHHHHHHhcc
Q 040870 3 ENGFKDWKDLWL------PELAGRISMVNSPREVIGT-QAA----------A--------------GRIAVQQNLALLGN 51 (215)
Q Consensus 3 ~~~p~sW~dL~d------p~~~Gri~~~d~~~~~~~~-al~----------~--------------g~~~a~~~L~~l~~ 51 (215)
+.+|+||++|.+ ..-.+..++.......... .+. . ...++.+++.++..
T Consensus 161 ~~~p~Twdel~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~al~~~~~l~~ 240 (420)
T 4hs7_A 161 KNAPQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYD 240 (420)
T ss_dssp CSCCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCSSCCSEEESSSCEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHhccCCceeeccCCCCccchhhhhhhccchhhhhccccccccccccCCHHHHHHHHHHHHHHH
Confidence 457899999975 2345566665443332222 110 0 01245556655543
Q ss_pred c-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHc-CCCeEEE-ecCCC-----ceeeeceEEEeCCCCCcccccCC
Q 040870 52 Q-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR-MSNVAVV-VPKSG-----ASLWADLWAIPAASRLETKQIGG 121 (215)
Q Consensus 52 ~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~-~~~v~~v-~P~eG-----~~~~~d~~~I~k~a~~~~~~~~~ 121 (215)
. +.- ...+...+.|.+|++.+.+.++......... +.++.++ +|..+ +..+.++++|+++++|++
T Consensus 241 ~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e----- 315 (420)
T 4hs7_A 241 KGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKY----- 315 (420)
T ss_dssp TTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCBSSSSBCCCEEEEEEEEEETTCSCHH-----
T ss_pred cCCCCcccccchhhhhhccCceEEEEechHHHHHHHHhcCCceEEEEccCCCCCCCccccccceEEecCCCCCHH-----
Confidence 2 211 1123566789999999999887766655433 4567776 67542 356778999999999998
Q ss_pred CCCCChHHHHHHHHHHHcHHHhCCCCCCCC
Q 040870 122 RVRGPFPLIHQWIEFCLQTARALPFNTRVK 151 (215)
Q Consensus 122 ~~~~~~~~A~~FInf~lspe~~~~~~~~~~ 151 (215)
+|.+||+|+++||.|..+....+
T Consensus 316 -------aA~~fi~~l~s~e~~~~~~~~~g 338 (420)
T 4hs7_A 316 -------WAKDLMLYITSKDTLQKYTDEMS 338 (420)
T ss_dssp -------HHHHHHHHHTSHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHCCHHHHHHHHHHhC
Confidence 89999999999999876654333
No 48
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=98.50 E-value=5.1e-08 Score=88.78 Aligned_cols=132 Identities=19% Similarity=0.121 Sum_probs=89.6
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hcc---------------------HHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AAG---------------------RIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~g---------------------~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ ++++ |++.+.......+ .+.. .+| ..++.+++.++... +.
T Consensus 125 ~P~Twdel~~~a~~l~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~ 204 (465)
T 2zxt_A 125 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 204 (465)
T ss_dssp CCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHHHHHHHhcCCcceeEecCcchHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHcCCC
Confidence 6899999998 6776 7766553332221 1111 110 23566777776532 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-C----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-G----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.+.++.........+.++.++ +|.. | +..+.++++|+++++|++
T Consensus 205 ~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e---------- 274 (465)
T 2zxt_A 205 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 274 (465)
T ss_dssp CTTCCHHHHHHHHHHTCCSBEEECTTTHHHHHHHTCCCCEECCCCGGGSCCCCEEEEEEEEEBTTCSCHH----------
T ss_pred CCCCCcchHHHHHHCCCeeEEEeCCchHHHHhhcCCceEEEeCCCCCCCCCccccccceEEEECCCCCHH----------
Confidence 1 11134567899999999988776665555556788888 7862 2 345778999999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 275 --aA~~Fi~~~l~s~e~q~~~~~ 295 (465)
T 2zxt_A 275 --LAKEFLENYLLTDEGLEAVNK 295 (465)
T ss_dssp --HHHHHHHHTTSSHHHHHHHHH
T ss_pred --HHHHHHHHHHcCHHHHHHHHH
Confidence 899999 99999999866543
No 49
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=98.49 E-value=6.1e-07 Score=81.32 Aligned_cols=133 Identities=20% Similarity=0.120 Sum_probs=90.9
Q ss_pred CCCCChhhhcCc--cC--CCceeeecChhHHH---HHHHH-cc---------------------HHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWLP--EL--AGRISMVNSPREVI---GTQAA-AG---------------------RIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~dp--~~--~Gri~~~d~~~~~~---~~al~-~g---------------------~~~a~~~L~~l~~~-v 53 (215)
++|+||++|++. ++ +|+..+.-.....+ .+... +| ..++.+++.++... +
T Consensus 126 ~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~ 205 (475)
T 3n94_A 126 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 205 (475)
T ss_dssp SCCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHHHHHHhCCCceEEeecCCchHHHHHHHhcCCceeecCCCCccccccccCCHHHHHHHHHHHHHHhcCC
Confidence 578999999985 22 47665542222211 11111 10 23567777776543 2
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. +...+.++++|+++++|++
T Consensus 206 ~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e--------- 276 (475)
T 3n94_A 206 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 276 (475)
T ss_dssp SCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH---------
T ss_pred CCCCCChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCCCccccceEEEEECCCCCHH---------
Confidence 11 12235678899999999999988887777777889888 4752 3456778999999999998
Q ss_pred ChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 126 PFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 126 ~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
+|.+||+ |+++++.|..+..
T Consensus 277 ---~A~~fi~~~l~s~e~~~~~~~ 297 (475)
T 3n94_A 277 ---LAKEFLENYLLTDEGLEAVNK 297 (475)
T ss_dssp ---HHHHHHHHTTSSHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCHHHHHHHHh
Confidence 8999995 9999999865543
No 50
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=98.48 E-value=6e-07 Score=82.70 Aligned_cols=97 Identities=18% Similarity=0.033 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeC
Q 040870 40 IAVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPA 110 (215)
Q Consensus 40 ~~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k 110 (215)
.++.+++.++..+ +.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. ++..+.++++|++
T Consensus 190 ~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~ 269 (523)
T 3py7_A 190 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINA 269 (523)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCCCccccceEEEEEC
Confidence 3567777776543 211 11235678899999999999998888777777888887 5752 2356778999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 111 ASRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
+++|++ +|.+||+ |+++|+.|..+..
T Consensus 270 ~sk~~e------------aA~~fi~~~l~s~e~q~~~~~ 296 (523)
T 3py7_A 270 ASPNKE------------LAKEFLENYLLTDEGLEAVNK 296 (523)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 999998 8999995 9999999866543
No 51
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=98.47 E-value=5.8e-07 Score=81.24 Aligned_cols=96 Identities=19% Similarity=0.061 Sum_probs=72.9
Q ss_pred HHHHHHHHhccc-cc-e-eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VR-L-FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~-~-~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~ 111 (215)
++.+++.++... +. . .+.++..+.|.+|++.+.+.++.........+.++.++ +|. .+...+.++++|+++
T Consensus 190 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~ 269 (507)
T 3oai_A 190 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 269 (507)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCCCcchhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCCCccccceEEEEECC
Confidence 566777776543 11 1 12235678899999999999988887777777889888 575 234567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++++.|..+..
T Consensus 270 s~~~e------------~A~~fl~~~l~s~e~~~~~~~ 295 (507)
T 3oai_A 270 SPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (507)
T ss_dssp CTTHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 99998 8999995 9999999866543
No 52
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=98.47 E-value=4.8e-07 Score=82.98 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=89.5
Q ss_pred CCCChhhhcC--ccCC--CceeeecChhHHH---HHHH-Hc----c-----------------HHHHHHHHHHhccc-cc
Q 040870 5 GFKDWKDLWL--PELA--GRISMVNSPREVI---GTQA-AA----G-----------------RIAVQQNLALLGNQ-VR 54 (215)
Q Consensus 5 ~p~sW~dL~d--p~~~--Gri~~~d~~~~~~---~~al-~~----g-----------------~~~a~~~L~~l~~~-v~ 54 (215)
+|+||++|++ .+++ |++.+..+..+.+ .+.. .+ + ..++.+++.++... +.
T Consensus 126 ~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~ 205 (509)
T 1r6z_P 126 PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHM 205 (509)
T ss_dssp CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHhCCcceeEecCCCcHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHcCCC
Confidence 6899999998 5554 7776654332221 1111 11 0 23566777766532 21
Q ss_pred e--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCCCCCcccccCCCCCCC
Q 040870 55 L--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGP 126 (215)
Q Consensus 55 ~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~a~~~~~~~~~~~~~~ 126 (215)
. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|+++++|++
T Consensus 206 ~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e---------- 275 (509)
T 1r6z_P 206 NADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE---------- 275 (509)
T ss_dssp CTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH----------
T ss_pred CCCCChhHHHHHHHcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCcceecccEEEEECCCCCHH----------
Confidence 1 11234567899999999988877665555567788888 786 33 345778999999999998
Q ss_pred hHHHHHHH-HHHHcHHHhCCCCC
Q 040870 127 FPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 127 ~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
+|.+|| +|+++|+.|..+..
T Consensus 276 --aA~~fl~~~l~s~e~q~~~~~ 296 (509)
T 1r6z_P 276 --LAKEFLENYLLTDEGLEAVNK 296 (509)
T ss_dssp --HHHHHHHHTTTSHHHHHHHHH
T ss_pred --HHHHHHHHHhcCHHHHHHHHH
Confidence 899999 99999999866543
No 53
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=98.46 E-value=3e-07 Score=82.77 Aligned_cols=96 Identities=17% Similarity=0.028 Sum_probs=72.3
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++..+ +.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. .+..+.++++|+++
T Consensus 190 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~ 269 (449)
T 3iot_A 190 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 269 (449)
T ss_dssp HHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCCCCCCCCCceeceeEEEEECC
Confidence 566777776543 111 12234678899999999999988887777777888888 5753 23567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHH-HHHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
++|++ +|.+|| ||+++++.+..+..
T Consensus 270 s~~~e------------~A~~fl~~~l~s~e~~~~~~~ 295 (449)
T 3iot_A 270 SPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (449)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 99998 899999 59999998865543
No 54
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=98.39 E-value=1.4e-06 Score=79.94 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=72.2
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++... +.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|.. +...+.++++|+++
T Consensus 190 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~ 269 (581)
T 3o3u_N 190 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 269 (581)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHhcCcCCCCCChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCCCCCCcccccceEEEEECC
Confidence 566777766543 111 12235678899999999999988887777777888887 4752 23567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++|+.|..+..
T Consensus 270 s~~~e------------~A~~fl~~~l~s~e~~~~~~~ 295 (581)
T 3o3u_N 270 SPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (581)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHhh
Confidence 99998 8999995 9999999866543
No 55
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=98.38 E-value=1.5e-06 Score=82.42 Aligned_cols=133 Identities=19% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCCCChhhhcCc----cCCCceeeecChhHH---HHHHHH-c---------------------cHHHHHHHHHHhccc-c
Q 040870 4 NGFKDWKDLWLP----ELAGRISMVNSPREV---IGTQAA-A---------------------GRIAVQQNLALLGNQ-V 53 (215)
Q Consensus 4 ~~p~sW~dL~dp----~~~Gri~~~d~~~~~---~~~al~-~---------------------g~~~a~~~L~~l~~~-v 53 (215)
++|+||++|++. +-+|+..+.-..... ..+... + +..++.+++.++... +
T Consensus 124 ~~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~ 203 (658)
T 3f5f_A 124 NPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH 203 (658)
T ss_dssp SCCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEESCCCCSSSEEECEESSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCCeEEeecCchHHHHHHHHhcCCeeeecCCCcccccccccCCHHHHHHHHHHHHHHHcCC
Confidence 578999999985 224666554222211 111111 1 023566777776543 2
Q ss_pred ce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCCCCCcccccCCCCCC
Q 040870 54 RL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRVRG 125 (215)
Q Consensus 54 ~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~a~~~~~~~~~~~~~ 125 (215)
.. .+.++..+.|.+|++.+.++|+.........+.++.++ +|.. ++..+.++++|+++++|++
T Consensus 204 ~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e--------- 274 (658)
T 3f5f_A 204 MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE--------- 274 (658)
T ss_dssp SCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH---------
T ss_pred CCCCCCchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEECCCCCHH---------
Confidence 11 12235678899999999999998888777777888888 4752 2356788999999999998
Q ss_pred ChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 126 PFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 126 ~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
+|.+||+ |+++|+.|..+..
T Consensus 275 ---aA~~Fl~~~l~s~e~q~~~~~ 295 (658)
T 3f5f_A 275 ---LAKEFLENYLLTDEGLEAVNK 295 (658)
T ss_dssp ---HHHHHHHHTTSSHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCHHHHHHHHh
Confidence 8999996 9999999866544
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=98.38 E-value=1.8e-06 Score=78.66 Aligned_cols=95 Identities=18% Similarity=0.038 Sum_probs=71.8
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++... +.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. ++..+.++++|+++
T Consensus 204 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~ 283 (471)
T 3mq9_A 204 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 283 (471)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEEEEEBSS
T ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCCCCCCcceecceEEEEECC
Confidence 566777776543 211 12235678899999999999988887777777788887 4752 34567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFN 147 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~ 147 (215)
++|++ +|.+||+ |+++|+.+..+.
T Consensus 284 sk~~e------------aA~~Fi~~~l~s~e~q~~~~ 308 (471)
T 3mq9_A 284 SPNKE------------LAKEFLENYLLTDEGLEAVN 308 (471)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHH
Confidence 99998 8999995 999999886543
No 57
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=98.37 E-value=5.4e-07 Score=79.90 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=71.8
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHc-CCCeEEE-ecCC-----CceeeeceEEEeC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR-MSNVAVV-VPKS-----GASLWADLWAIPA 110 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~-~~~v~~v-~P~e-----G~~~~~d~~~I~k 110 (215)
++.+++.++... +.. ...++..+.|.+|++.+.+.++......... +.++.++ +|.. ++....++++|++
T Consensus 230 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~ 309 (420)
T 4hw8_A 230 KNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSE 309 (420)
T ss_dssp HHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCEETTEECCCEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCCCCCCcchHHHHhhcCceEEEEeCCccHHHHHhhcCCCeEEEeCCCCCCCCCCcccccceEEEeC
Confidence 566777776432 211 1223567889999999999998877766655 6678887 5652 3446678999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 111 ASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+++|++ +|.+||+|+++|+.|..+..
T Consensus 310 ~s~~~e------------~A~~fl~~l~s~e~q~~~~~ 335 (420)
T 4hw8_A 310 YSKHKY------------WAKDLMLYITSKDTLQKYTD 335 (420)
T ss_dssp TCSCHH------------HHHHHHHHTTSHHHHHHHHH
T ss_pred CCCCHH------------HHHHHHHHHhCHHHHHHHHH
Confidence 999998 99999999999999876544
No 58
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=98.36 E-value=1.3e-06 Score=81.73 Aligned_cols=96 Identities=18% Similarity=0.040 Sum_probs=72.7
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++... +.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. +...+.++++|+++
T Consensus 190 ~al~~l~~l~~~G~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~ 269 (568)
T 3h4z_A 190 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 269 (568)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCccceecceEEEEECC
Confidence 566777776543 111 11234678899999999999998888777777788887 5752 23567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++||.|..+..
T Consensus 270 skn~e------------aA~~Fl~~fl~s~e~q~~~~~ 295 (568)
T 3h4z_A 270 SPNKE------------LAKEFLENYLLTDEGLEAVNK 295 (568)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHH
Confidence 99998 8999997 9999999866543
No 59
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=98.33 E-value=2.5e-06 Score=78.90 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++... +.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|.. +.....++++|+++
T Consensus 192 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~ 271 (539)
T 3h3g_A 192 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 271 (539)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCCCCCCcccccceEEEEECC
Confidence 566777776543 211 12235678899999999999988887777777888888 5752 34567788999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++++.|..+..
T Consensus 272 s~~~e------------aA~~Fl~~~l~s~e~q~~~~~ 297 (539)
T 3h3g_A 272 SPNKE------------LAKEFLENYLLTDEGLEAVNK 297 (539)
T ss_dssp CSCHH------------HHHHHHHHTTTSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 99998 8999995 9999999865543
No 60
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=98.28 E-value=3.3e-06 Score=73.86 Aligned_cols=95 Identities=13% Similarity=-0.024 Sum_probs=68.7
Q ss_pred HHHHHHHHhccccce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC---CC------ceeeeceEEE
Q 040870 41 AVQQNLALLGNQVRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK---SG------ASLWADLWAI 108 (215)
Q Consensus 41 ~a~~~L~~l~~~v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~---eG------~~~~~d~~~I 108 (215)
++.+++.++...... .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|
T Consensus 191 ~al~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~g~~~~P~~~~~g~~~~~~~~~g~~~~~i 270 (381)
T 1elj_A 191 EGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYF 270 (381)
T ss_dssp HHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEEE
T ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchhhhHHHhcCCceeEEeCCCcCCCCccCCCCccccceEEEE
Confidence 456666666432111 11234567899999999988776655555557789988 784 45 4456788999
Q ss_pred eCCCCCcccccCCCCCCChHHHHHHHHHHHc-HHHhCCCC
Q 040870 109 PAASRLETKQIGGRVRGPFPLIHQWIEFCLQ-TARALPFN 147 (215)
Q Consensus 109 ~k~a~~~~~~~~~~~~~~~~~A~~FInf~ls-pe~~~~~~ 147 (215)
+++++|++ +|.+||+|+++ ||.|..+.
T Consensus 271 ~~~s~~~e------------~A~~fi~~l~~~~e~~~~~~ 298 (381)
T 1elj_A 271 AAGIKNKD------------AAWKFAKWLTTSEESIKTLA 298 (381)
T ss_dssp BTTCSCHH------------HHHHHHHHHHHCHHHHHHHH
T ss_pred ECCCCCHH------------HHHHHHHHHhcCHHHHHHHH
Confidence 99999998 89999999999 99876544
No 61
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=98.23 E-value=5.5e-06 Score=72.53 Aligned_cols=132 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred CCCChhhhcCc--cCC--CceeeecChhHHH---HHHH-Hcc-----------------------HHHHHHHHHHh-ccc
Q 040870 5 GFKDWKDLWLP--ELA--GRISMVNSPREVI---GTQA-AAG-----------------------RIAVQQNLALL-GNQ 52 (215)
Q Consensus 5 ~p~sW~dL~dp--~~~--Gri~~~d~~~~~~---~~al-~~g-----------------------~~~a~~~L~~l-~~~ 52 (215)
+|+||++|++. +++ |++.+.....+.+ .+.. .+| ..++.+++.++ .++
T Consensus 127 ~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~dg~~~~~~~~~~~~~~~~al~~~~~l~~~~ 206 (386)
T 2gh9_A 127 PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKY 206 (386)
T ss_dssp CCSSHHHHHHHHHHHCSSSCEEEECCTTCHHHHHHHHHHHTCSSSEEEETTTEEEEEEESSSHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHhhhCCEEEEEeecCchHHHHHHHHHcCCceEeeecccCCccccccccCCHHHHHHHHHHHHHHHhc
Confidence 68999999985 443 7776654332211 1111 111 12456777777 443
Q ss_pred -ccee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC------ceeeeceEEEeCCCCCcccccCC
Q 040870 53 -VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG------ASLWADLWAIPAASRLETKQIGG 121 (215)
Q Consensus 53 -v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG------~~~~~d~~~I~k~a~~~~~~~~~ 121 (215)
+..- +.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +....++++|+++++|++
T Consensus 207 g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~~~i~~~s~~~e----- 281 (386)
T 2gh9_A 207 NLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKT----- 281 (386)
T ss_dssp CCSCTTCCHHHHHHHHHHTCEEEEEECGGGHHHHHHTTCCEEEECCCCCTTCSSCCCCEEEEEEEEEBTTCTTHH-----
T ss_pred CcCCCCCChHHHHHHHhCCCeeEEEeCcHHHHHHHhcCCCeEEEecCCCCCCCCcccccccceEEEEECCCCCHH-----
Confidence 2111 1134567899999999998877665555556789988 786 23 335678899999999998
Q ss_pred CCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 122 RVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 122 ~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+|.+||+|+++|+.|..+..
T Consensus 282 -------~A~~fl~~l~s~e~~~~~~~ 301 (386)
T 2gh9_A 282 -------QAVNFAKTLVTGRNLVAFNQ 301 (386)
T ss_dssp -------HHHHHHHHHTSHHHHHHHHH
T ss_pred -------HHHHHHHHHhCHHHHHHHHH
Confidence 89999999999999865543
No 62
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=98.22 E-value=7.8e-06 Score=72.62 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=53.7
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCCCce-------------------------eeeceEEEeCCCC
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKSGAS-------------------------LWADLWAIPAASR 113 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~eG~~-------------------------~~~d~~~I~k~a~ 113 (215)
+....+.+|++++|+.|..++... + +.++ +|++-.. --...++|+++++
T Consensus 231 ~~l~~v~~G~aDag~vy~S~a~~~---~--l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~ 305 (354)
T 3k6v_A 231 ELSSALETGEIDYLYIYRSVAEQH---G--FEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAE 305 (354)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHH---T--CEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCT
T ss_pred HHHHHHHcCCCCEEEEEhhhhhhc---C--CcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCCC
Confidence 667889999999999999988764 2 4444 5544111 0256789999999
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 114 LETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 114 ~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
|++ +|++|++|++|++.|.-+
T Consensus 306 ~~~------------~A~~Fi~fL~S~eaq~i~ 326 (354)
T 3k6v_A 306 NSE------------LATEFVALLLGETGQQIF 326 (354)
T ss_dssp THH------------HHHHHHHHHHSHHHHHHH
T ss_pred CHH------------HHHHHHHHHcCHHHHHHH
Confidence 998 899999999999988644
No 63
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=98.16 E-value=6.6e-06 Score=71.30 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=60.7
Q ss_pred hhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC----CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHH
Q 040870 61 YLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK----SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIE 135 (215)
Q Consensus 61 ~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~----eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn 135 (215)
..+.|.+|++.+.++|+...........++.++ +|. +++.++.++++|+++++|++ +|.+||+
T Consensus 216 ~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~ 283 (371)
T 3thi_A 216 RASWFAQGSGRAFIGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPE------------LAKKLAN 283 (371)
T ss_dssp HHHHHHHTBEEEEEEETTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHH------------HHHHHHH
T ss_pred HHHHHhCCeeeEEecchhhhhHhhhcccceEEEeCCCCCCCCCceeeeeEEEEcCCCCCHH------------HHHHHHH
Confidence 567899999999999887665554444477777 553 36778999999999999998 8999999
Q ss_pred HHHcHHH-hCCCCC
Q 040870 136 FCLQTAR-ALPFNT 148 (215)
Q Consensus 136 f~lspe~-~~~~~~ 148 (215)
|+++||. |..+..
T Consensus 284 ~l~s~e~~~~~~~~ 297 (371)
T 3thi_A 284 VMASADTVEQALRP 297 (371)
T ss_dssp HHHSHHHHHHHHSC
T ss_pred HHcCcHHHHHhhCc
Confidence 9999999 554444
No 64
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=98.15 E-value=1e-05 Score=71.30 Aligned_cols=107 Identities=9% Similarity=-0.016 Sum_probs=71.5
Q ss_pred HHHHHHHHhccccc----eeccchhhhhhhcCcEEEEEechhcHHHHHHc--CCCeEEE-ecCC----C---ceeeeceE
Q 040870 41 AVQQNLALLGNQVR----LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR--MSNVAVV-VPKS----G---ASLWADLW 106 (215)
Q Consensus 41 ~a~~~L~~l~~~v~----~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~--~~~v~~v-~P~e----G---~~~~~d~~ 106 (215)
++.+++.++.+.+. ..+.++..+.|.+|++.+.+.+++.......+ +.++.++ +|.. | ...+.+++
T Consensus 224 ~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~ 303 (415)
T 3oo8_A 224 KVFDQWRELAAYQQKGANGRTWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGF 303 (415)
T ss_dssp HHHHHHHHHGGGBCSSGGGCCHHHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEEECCCEEE
T ss_pred HHHHHHHHHHHHhCCCCcccCHHHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccccccCceE
Confidence 55666666655111 11123456889999999888776223322222 3457765 4542 2 24577899
Q ss_pred EEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC-CCCChhhhhcC
Q 040870 107 AIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT-RVKLPEELLKG 159 (215)
Q Consensus 107 ~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~-~~~~~~~~~~~ 159 (215)
+|+++++|++ +|.+||+|+++||.|..+.. ..++.+.....
T Consensus 304 ~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~~~g~~P~~~~~ 345 (415)
T 3oo8_A 304 ILPKKGKNAA------------AAKKVLQYIGTAEAEAAFLKTDHWDVGLANGL 345 (415)
T ss_dssp ECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHTTCSSCEECSTTC
T ss_pred EEECCCCCHH------------HHHHHHHHHhCHHHHHHHHhccCCCCCCCCCC
Confidence 9999999998 89999999999999988877 66655555443
No 65
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=98.13 E-value=2.8e-06 Score=74.93 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=65.5
Q ss_pred HHHHHHHHhccc-cc-----eeccchhhhhhhcCcEEEEEechhcHHHHHHcC--CCeEEE-ecC--CCce--ee-ec-e
Q 040870 41 AVQQNLALLGNQ-VR-----LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRM--SNVAVV-VPK--SGAS--LW-AD-L 105 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~-----~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~--~~v~~v-~P~--eG~~--~~-~d-~ 105 (215)
++.+++.++..+ +. ..+.++..+.|.+|++.+.+.++.........+ .++.++ +|. +|.. +. .+ +
T Consensus 216 ~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~g~~~~ 295 (401)
T 2heu_A 216 DDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLA 295 (401)
T ss_dssp HHHHHHHGGGSTTCBCTTGGGCCHHHHHHHHHTTSSSEEEEETTHHHHHHTTCCSSCEEEECBCCSSTTCCBEEECBSSE
T ss_pred HHHHHHHHHHHCCCCCCCcCCCChHHHHHHHHcCCceEEecCcccHHHHHhhCcccceeEEECCCCCCCCcccccCCcce
Confidence 456666666532 11 111134567899999999998776655555443 357777 775 3433 22 35 4
Q ss_pred EEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 106 WAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 106 ~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
++|+++++|++ +|.+||+|+++++.|..+.
T Consensus 296 ~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~~ 325 (401)
T 2heu_A 296 WSISATTKHPK------------EANAFVEYMTRPEVMQKYY 325 (401)
T ss_dssp EEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHH
T ss_pred EEEECCCCCHH------------HHHHHHHHHcChHHHHHHH
Confidence 99999999998 8999999999999886553
No 66
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=98.13 E-value=6.9e-06 Score=78.96 Aligned_cols=96 Identities=19% Similarity=0.060 Sum_probs=70.1
Q ss_pred HHHHHHHHhccc-cceecc--chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRLFDR--THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~~~~--~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~ 111 (215)
++.+++.++... ...... +...+.|.+|++.+.+.|+.........+.++.++ +|. .++..+.++++|+++
T Consensus 191 ~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gva~lP~~~g~~~~~~~g~~~~~I~~~ 270 (715)
T 4h1g_A 191 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 270 (715)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCcchhhhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceeeeEEEEEECC
Confidence 566677666432 111111 34567899999999999888777777777788776 452 245667889999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+.+|+.|..+..
T Consensus 271 Skn~e------------aA~~Fl~~~l~s~e~q~~~~~ 296 (715)
T 4h1g_A 271 SPNKE------------LAKEFLENYLLTDEGLEAVNK 296 (715)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCcHH------------HHHHHHHHHhCCHHHHHHHHH
Confidence 99998 8999996 7788998865543
No 67
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=98.12 E-value=7.5e-06 Score=75.45 Aligned_cols=96 Identities=18% Similarity=0.038 Sum_probs=73.2
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-----CceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-----G~~~~~d~~~I~k~ 111 (215)
++.+++.++..+ +.. .+.++..+.|.+|++.+.+.|+.........+.++.++ +|.. ++..+.++++|+++
T Consensus 191 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~ 270 (522)
T 3mp6_A 191 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 270 (522)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCCCCChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCCCCCCcccccceEEEEECC
Confidence 567777776543 211 12235678899999999999988887777777888888 5752 34567789999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+++++.|..+..
T Consensus 271 sk~~e------------aA~~Fi~~~l~s~e~q~~~~~ 296 (522)
T 3mp6_A 271 SPNKE------------LAKEFLENYLLTDEGLEAVNK 296 (522)
T ss_dssp CTTHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 99998 8999995 9999999866543
No 68
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.12 E-value=4.6e-06 Score=78.41 Aligned_cols=96 Identities=19% Similarity=0.073 Sum_probs=69.7
Q ss_pred HHHHHHHHhccc--ccee-ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ--VRLF-DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~--v~~~-~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~ 111 (215)
++.+++.++... +... +.+...+.|.+|++.+.+.++.........+.++.++ +|. .++..+.++++|+++
T Consensus 204 ~al~~l~~l~~~g~~~~~~~~~~~~~~f~~Gk~Am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~ 283 (602)
T 4b3n_A 204 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIDAA 283 (602)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCcccchhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceEeeEEEEEECC
Confidence 456666665432 2111 1134567899999999999888777777777888876 452 345677889999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+.+++.|..+..
T Consensus 284 Skn~e------------aA~~Fl~~~l~s~e~~~~~~~ 309 (602)
T 4b3n_A 284 SPNKE------------LAKEFLENYLLTDEGLEAVNK 309 (602)
T ss_dssp CTTHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHH
Confidence 99998 8999996 6778988865543
No 69
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=98.04 E-value=7e-06 Score=72.29 Aligned_cols=95 Identities=8% Similarity=0.045 Sum_probs=66.4
Q ss_pred HHHHHHHHhccccc----eeccchhhhhhhcCcEEEEEechhcHHHHHHc-----CCCeEEE-ecC-CCc-eeeeceEEE
Q 040870 41 AVQQNLALLGNQVR----LFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR-----MSNVAVV-VPK-SGA-SLWADLWAI 108 (215)
Q Consensus 41 ~a~~~L~~l~~~v~----~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~-----~~~v~~v-~P~-eG~-~~~~d~~~I 108 (215)
++.+++.++.+.+. ..+.++..+.|.+|++.+.++++......... +.++.++ +|. +|. ..+.++++|
T Consensus 203 ~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~i 282 (400)
T 2b3f_A 203 RAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAAFNIMGDWAAGYMTTTLKLKPGTDFAWAPSPGTQGVFMMLSDSFGL 282 (400)
T ss_dssp HHHHHHHHHHTTBCTTGGGCCHHHHHHHHHHTSCSEEECCTHHHHHHHHTTCCCBTTTBEEEECTTCTTEEEEECEEECC
T ss_pred HHHHHHHHHHHhcCCCccCCCHHHHHHHHhCCceEEEEeccccHhhhhhhhcCCCCCCeEEEeCCCCCCceecccceEEE
Confidence 45666666653221 11113466789999999998766544444332 4578887 785 343 356778999
Q ss_pred eCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCC
Q 040870 109 PAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFN 147 (215)
Q Consensus 109 ~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~ 147 (215)
+++++|++ +|.+||+|+++|+.|..+.
T Consensus 283 ~~~s~~~e------------~A~~fi~~l~s~e~q~~~~ 309 (400)
T 2b3f_A 283 PKGAKNRQ------------NAINWLRLVGSKEGQDTSN 309 (400)
T ss_dssp BTTCTTHH------------HHHHHHHHHTSHHHHHHHH
T ss_pred eCCCCCHH------------HHHHHHHHHcCHHHHHHHH
Confidence 99999998 8999999999999886553
No 70
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=97.96 E-value=1.9e-05 Score=75.46 Aligned_cols=96 Identities=19% Similarity=0.055 Sum_probs=73.3
Q ss_pred HHHHHHHHhccc-cce--eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRL--FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~--~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~ 111 (215)
++.+++.++..+ +.. ...++..+.|.+|++.+.+.|+.........+.++.++ +|. .++..+..+++|+++
T Consensus 472 eal~~l~~l~~~G~~~~~~~~~~~~~~F~sGkvam~~~g~w~~~~~~~~~~~~gvaplP~~~g~~~~~~~gg~~~~I~k~ 551 (661)
T 3osq_A 472 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 551 (661)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHCCCCCCCCCchHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCCcccccceEEEEECC
Confidence 456666666432 111 11235678899999999999888877777677788888 675 456778889999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~ 148 (215)
++|++ +|.+||+ |+.+||.|..+..
T Consensus 552 Skn~e------------aA~~Fl~~flts~E~q~~~~~ 577 (661)
T 3osq_A 552 SPNKE------------LAKEFLENYLLTDEGLEAVNK 577 (661)
T ss_dssp CSCHH------------HHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHH
Confidence 99998 8999999 9999999876654
No 71
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=97.90 E-value=3.2e-06 Score=74.28 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHHHhccc------cceeccchhhhhhhcCcEEEEEechhcHHHHH-HcCCCeEEEe-c--C-CCc--eeee----
Q 040870 41 AVQQNLALLGNQ------VRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAV-KRMSNVAVVV-P--K-SGA--SLWA---- 103 (215)
Q Consensus 41 ~a~~~L~~l~~~------v~~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~-~~~~~v~~v~-P--~-eG~--~~~~---- 103 (215)
++.+++.++... ...++.++..+.|.+|++.+.+.|+....... ..+.++.+.. | . +|. ..++
T Consensus 207 ~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 286 (405)
T 3i3v_A 207 LGIEYFAHLRDAGVFADKAQGLTSDSMTTQFNTEEAAVQSAMSSALAKVPEKVAGHTEVGGWPLADGAAHDGPTVIRAYT 286 (405)
T ss_dssp HHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTSEEEEECCHHHHTTSCHHHHHTEEEECBCBCTTCSSSSCEEEEESC
T ss_pred HHHHHHHHHHHCCCcCCCcccCCHHHHHHHHhcCCeEEEEeCcEehhhhhhccccCCcEEeCCCCCCCCCCCCceEeccC
Confidence 456666666532 11122235678899999999998876554433 1234566553 4 2 232 3333
Q ss_pred -ceEEEeCCC-CCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCCC
Q 040870 104 -DLWAIPAAS-RLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKL 152 (215)
Q Consensus 104 -d~~~I~k~a-~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~~ 152 (215)
.+++|++++ +|++ +|.+||+|+++||.|..+....++
T Consensus 287 ~~~~~i~~~s~~~~e------------~A~~fl~~l~s~e~q~~~~~~~g~ 325 (405)
T 3i3v_A 287 LIGFWISPNGVRKIE------------QVEKFLRFMYRPDVVARFVTESGR 325 (405)
T ss_dssp SSEEEECHHHHTTHH------------HHHHHHHHHTSHHHHHHHHHHHCC
T ss_pred ceEEEEeCCchhhHH------------HHHHHHHHHhCHHHHHHHHHhcCC
Confidence 669999999 9998 899999999999998765543333
No 72
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=97.71 E-value=1.4e-05 Score=70.91 Aligned_cols=95 Identities=12% Similarity=-0.021 Sum_probs=64.8
Q ss_pred HHHHHHHHhccc-c-cee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecCC-CceeeeceEEEeCC--C
Q 040870 41 AVQQNLALLGNQ-V-RLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPKS-GASLWADLWAIPAA--S 112 (215)
Q Consensus 41 ~a~~~L~~l~~~-v-~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~e-G~~~~~d~~~I~k~--a 112 (215)
++.+++.++... . ... +.++..+.|.+|++.+.+.++........ ..++.+. +|.. +...+..+++|+++ +
T Consensus 241 ~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~-~~~~~~~~~P~~~~~~~~~~~~~i~~~~~s 319 (430)
T 2w7y_A 241 DALKMVMKEIQANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSK-NPSLAPGIYPAGVAISSSGGGITISSKMSE 319 (430)
T ss_dssp HHHHHHHHHHHHTCGGGCSBCHHHHHHHHHTTSEEEECCCGGGHHHHTT-STTEEEECBGGGEEEEECCCCEEEBSSSCH
T ss_pred HHHHHHHHHHHcCCCCccccChHHHHHHHhcCCeEEEEcChhhhhhhhc-CCCCceeccCCCcccccCCcceEEecCCCc
Confidence 456666666432 1 111 12346678999999999887655544433 3578775 6764 33446678999997 6
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 113 RLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 113 ~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
+|++ +|.+||+|+++|+.|..+..
T Consensus 320 ~~~e------------~A~~fl~~l~s~e~~~~~~~ 343 (430)
T 2w7y_A 320 AKQK------------LALEFLKYMTSDDVQKVIFE 343 (430)
T ss_dssp HHHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred ccHH------------HHHHHHHHhcCHHHHHHHHH
Confidence 7887 89999999999999865543
No 73
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=97.69 E-value=5e-05 Score=69.61 Aligned_cols=99 Identities=18% Similarity=0.042 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccc-ccee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeC
Q 040870 40 IAVQQNLALLGNQ-VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 110 (215)
Q Consensus 40 ~~a~~~L~~l~~~-v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k 110 (215)
.++.+++.++... .... +.+...+.|.+|++.+.+.++.........+.++.++ +|. .++..+..+++|++
T Consensus 193 ~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gv~plP~~~g~~~~~~~g~~~~~I~~ 272 (487)
T 4exk_A 193 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINA 272 (487)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHcCCCCcccchhhHHHhhhcCCEEEEEeCHHHHHHHHhcCCCeeEEEeccCCCCCCcceecceEEEEEC
Confidence 3566677766543 2111 1234567899999999999988877777778888776 342 23456778999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCCCCCC
Q 040870 111 ASRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPFNTRV 150 (215)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~~~~~ 150 (215)
+++|++ +|.+||+ |+.+++.|..+....
T Consensus 273 ~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~~~ 301 (487)
T 4exk_A 273 ASPNKE------------LAKEFLENYLLTDEGLEAVNKDK 301 (487)
T ss_dssp TCTTHH------------HHHHHHHHTTSSHHHHHHHHHHS
T ss_pred CCCCHH------------HHHHHHHHHhCCHHHHHHHHHcC
Confidence 999998 8999996 778899886654433
No 74
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=97.68 E-value=4.9e-05 Score=68.16 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=66.0
Q ss_pred HHHHHHHHhccc------cceeccchhhhhhhcCcEEEEEechhcHHHHHHcC-----CCeEEE-ecC--C--Cc-----
Q 040870 41 AVQQNLALLGNQ------VRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRM-----SNVAVV-VPK--S--GA----- 99 (215)
Q Consensus 41 ~a~~~L~~l~~~------v~~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~-----~~v~~v-~P~--e--G~----- 99 (215)
++.+++.++... ....+.++..+.|.+|++.+.+.++.......... .++.++ +|. . |.
T Consensus 261 ~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~ 340 (456)
T 4g68_A 261 DAAQKLQDMVNAGAFDSGFMGLTRDEATAEFNQGKAAMYFGGNFDAAAFVSDPSSLVKGKIEAVRFPTIEGGKGDPTEYI 340 (456)
T ss_dssp HHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTCCSEEEEEGGGHHHHHTSTTCSCTTTEEEECCCBCTTCCSCTTCEE
T ss_pred HHHHHHHHHHHcCCCCCccccCChHHHHhhhccCCEEEEEeCchHHHHHHhccccccCCceEEEecCccCCCCCCcceee
Confidence 455666665321 11222235678899999998888766555554332 256666 553 1 11
Q ss_pred eeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCCCCCC
Q 040870 100 SLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNTRVKL 152 (215)
Q Consensus 100 ~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~~~~~ 152 (215)
..+..+++|+++++|++ +|.+||+||.+++.|..+....++
T Consensus 341 ~g~~~~~~i~~~sk~~e------------~A~~fl~~l~s~e~~~~~~~~~g~ 381 (456)
T 4g68_A 341 GGTVGALMVSANSKYKD------------EAVRAAKYLAKQLSDMDYLIATGL 381 (456)
T ss_dssp EEEEEEEEEBTTCSCHH------------HHHHHHHHHHHHHHHHHHHHTSSE
T ss_pred cccceeeeecCCCcCHH------------HHHHHHHHHCCHHHHHHHHHhcCC
Confidence 12456789999999998 899999999999998766544443
No 75
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=97.65 E-value=0.00013 Score=64.25 Aligned_cols=93 Identities=9% Similarity=-0.033 Sum_probs=63.5
Q ss_pred HHHHHHHHhccc--ccee--ccchhhhhhhcCcEEEEEechhcHHHHHHc-----CCCeEEE-ecC--CCc----eeeec
Q 040870 41 AVQQNLALLGNQ--VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKR-----MSNVAVV-VPK--SGA----SLWAD 104 (215)
Q Consensus 41 ~a~~~L~~l~~~--v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~-----~~~v~~v-~P~--eG~----~~~~d 104 (215)
++.+++.++... +... ++++..+.|.+|++.+.+.++......... +.++.++ +|. +|. .....
T Consensus 211 ~al~~~~~l~~~g~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~ 290 (412)
T 2z8f_A 211 ATADFYQQLLDAKAATTNPRWDPSFDASIKDGSLIGTVAAAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGS 290 (412)
T ss_dssp HHHHHHHHHHHTTCSBCCCTTSHHHHHHHHTTCBCEEEEEGGGHHHHHHHHTTTTTTTEEEEECCBCSSCTTCBCBCCCE
T ss_pred HHHHHHHHHHHcCCcCccccCCHHHHHHHhCCCEEEEecccchhhHHhhhCCcCcccceEEEcCCCCCCCCCccccCCcc
Confidence 456666666432 2111 123456789999999998766554433322 3468876 786 242 44567
Q ss_pred eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcH-HHhCC
Q 040870 105 LWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQT-ARALP 145 (215)
Q Consensus 105 ~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lsp-e~~~~ 145 (215)
+++|+++++|++ +|.+||+|++++ +.+..
T Consensus 291 ~~~i~~~s~~~e------------~A~~fl~~l~s~~e~~~~ 320 (412)
T 2z8f_A 291 AVAVLKNSKHPK------------EAMEFLDWFNTQVPDLVS 320 (412)
T ss_dssp EEEEBTTCSCHH------------HHHHHHHHHTTCHHHHHH
T ss_pred eEEEeCCCCCHH------------HHHHHHHHHccCHHHHHh
Confidence 899999999998 899999999997 77654
No 76
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=97.61 E-value=3.4e-05 Score=74.89 Aligned_cols=96 Identities=18% Similarity=0.094 Sum_probs=66.1
Q ss_pred HHHHHHHHhccccce---eccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-CC----ceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQVRL---FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~v~~---~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-eG----~~~~~d~~~I~k~ 111 (215)
++.+++.++..+-.. .+.++..+.|.+|++.+.+.++.........+.++.++ +|. +| +..+.++++|+++
T Consensus 194 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~ 273 (805)
T 2nvu_B 194 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 273 (805)
T ss_dssp HHHHHHHHHHHSSSCCTTCCHHHHHHHHTTTCEEEEEECTTTTTTTTTTTCCCCCBCCCBCSSSCCCCCEEEEEEEEBSS
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHCCCEEEEEeChhhHHHHhhcCCCeEEEECCCCCCCCccceecceEEEEECC
Confidence 566677766543111 11134567899999999998765443333344566663 675 33 3467889999999
Q ss_pred CCCcccccCCCCCCChHHHHHHH-HHHHcHHHhCCCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWI-EFCLQTARALPFNT 148 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FI-nf~lspe~~~~~~~ 148 (215)
++|++ +|.+|| ||+++|+.|..+..
T Consensus 274 sk~~e------------aA~~Fi~~fl~s~e~q~~~~~ 299 (805)
T 2nvu_B 274 SPNKE------------LAKEFLENYLLTDEGLEAVNK 299 (805)
T ss_dssp CSTTH------------HHHHHHHTTTSSHHHHHHHHT
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHHHh
Confidence 99998 899999 59999999865543
No 77
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=97.46 E-value=0.00048 Score=60.38 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=54.4
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHc----CCCeEEE-ecC--CC---ceeeeceEEEeCCCCCcccccCCCCCCChHH
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKR----MSNVAVV-VPK--SG---ASLWADLWAIPAASRLETKQIGGRVRGPFPL 129 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~----~~~v~~v-~P~--eG---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~ 129 (215)
+..+.|.+|++.+.+.++......... +.++.++ +|. .| +.....+++|+++++|++ +
T Consensus 240 ~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~gg~~~~i~~~s~~~e------------~ 307 (409)
T 1eu8_A 240 PVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKA------------L 307 (409)
T ss_dssp HHHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHH------------H
T ss_pred HHHHHHhCCCEEEEecCHHHhhccCCCCccccCceEEEeCCCCCCCCcccccCceeEEecCCCCCHH------------H
Confidence 456789999999999877654444322 2357766 563 22 233446789999999998 8
Q ss_pred HHHHHHHHHcHHHhCCC
Q 040870 130 IHQWIEFCLQTARALPF 146 (215)
Q Consensus 130 A~~FInf~lspe~~~~~ 146 (215)
|.+||+|+.+++.+..+
T Consensus 308 A~~fl~~l~s~e~~~~~ 324 (409)
T 1eu8_A 308 AWEFVKFVESYSVQKGF 324 (409)
T ss_dssp HHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHH
Confidence 99999999999987554
No 78
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=97.33 E-value=0.00039 Score=63.61 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccc-c-----ceeccchhhh-hhhcC---cEEEEEechhcHHHHHHcCCCeEEE-ecCC--C--------
Q 040870 40 IAVQQNLALLGNQ-V-----RLFDRTHYLK-VFGIG---DVWIAVGWSSDVLPAVKRMSNVAVV-VPKS--G-------- 98 (215)
Q Consensus 40 ~~a~~~L~~l~~~-v-----~~~~~~~~~~-~~~~G---ev~ia~~w~~~~~~~~~~~~~v~~v-~P~e--G-------- 98 (215)
.++.+++.++... + ...+.++... .+..| ++.+.+.|+....... .+.++.++ +|.. |
T Consensus 265 ~~al~~~~~l~~~G~~~~~~~t~~~~~~~~~~~~~G~~a~~a~~~~w~~~~~~~~-~~~~~~~~p~p~~~~g~~~~~~~~ 343 (535)
T 3omb_A 265 KEVIKYYHKLISEGLIPAEWATKDDDAYNADQISDGKTAKTGVVFGWSPSDNFGK-LKDQYIAMPVPSAPGVSPDQTVWD 343 (535)
T ss_dssp HHHHHHHHHHHHTTSSCTTGGGCCHHHHHHHHHTTSSSCCEEEEEESCHHHHHGG-GGGGEEECCCCBCTTCCGGGCCCC
T ss_pred HHHHHHHHHHHHCCCCChhhhcCCHHHHHHHHhcCCCcceEEEEeecccccccCC-CcccEEEecCccCCCCCcccceec
Confidence 4566677766432 1 1111123333 35677 8888888875543322 23455554 3432 2
Q ss_pred ---ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 99 ---ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 99 ---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
+....++++|+++++|++ +|.+||+|++|||.|.
T Consensus 344 ~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~q~ 380 (535)
T 3omb_A 344 GSSSELSPAGLSISSHAANKD------------AALKLANLLYSEKYSV 380 (535)
T ss_dssp CCCSSEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHH
T ss_pred cccccccCCeEEEECCCCCHH------------HHHHHHHHhcCHHHHH
Confidence 234567899999999998 8999999999999874
No 79
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=97.26 E-value=0.0011 Score=59.14 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccc------cceeccchhhhhhhcCcEEEEEechhcHHHHHH----cCCCe--EEEe-cC--CC------
Q 040870 40 IAVQQNLALLGNQ------VRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVK----RMSNV--AVVV-PK--SG------ 98 (215)
Q Consensus 40 ~~a~~~L~~l~~~------v~~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~----~~~~v--~~v~-P~--eG------ 98 (215)
.++.+++.++... ....+.++..+.|.+|++.+.+.|......... ..+.. ..+. |. .|
T Consensus 228 ~~al~~~~~l~~~G~i~~~~~t~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~ 307 (490)
T 3a09_A 228 KDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEED 307 (490)
T ss_dssp HHHHHHHHHHHHTTSBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHHHHHHTTTTSTTCCEEEECCCBCTTSCCCBCC
T ss_pred HHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHCCCEEEEEechHHHHHHHHHHhhcCCCceEEeeccCcCCCCcccCCC
Confidence 3556666665432 222233456788999999998888765544332 12223 2222 21 11
Q ss_pred --ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 99 --ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 99 --~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
......+++|+++|+|++ +|.+||+|+.+||.|.
T Consensus 308 ~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~ 343 (490)
T 3a09_A 308 ARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRE 343 (490)
T ss_dssp CCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHH
T ss_pred ccccccceEEEEECCCCCHH------------HHHHHHHHhCCHHHHH
Confidence 112345699999999998 8999999999999873
No 80
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=97.12 E-value=0.001 Score=58.26 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=50.1
Q ss_pred hhhhhcCcEEEEEechhcHHHHHH---cCCCeEEE-ecC-CCc---ee---eeceEEEeCCCCCcccccCCCCCCChHHH
Q 040870 62 LKVFGIGDVWIAVGWSSDVLPAVK---RMSNVAVV-VPK-SGA---SL---WADLWAIPAASRLETKQIGGRVRGPFPLI 130 (215)
Q Consensus 62 ~~~~~~Gev~ia~~w~~~~~~~~~---~~~~v~~v-~P~-eG~---~~---~~d~~~I~k~a~~~~~~~~~~~~~~~~~A 130 (215)
...|.+|++.+.+.|+........ .+.++.++ +|. +|. .. ...+++|+++++|++ +|
T Consensus 233 ~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A 300 (408)
T 2uvj_A 233 MKPWINGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQ------------ES 300 (408)
T ss_dssp SHHHHTTSBCEEEEEGGGTHHHHTTSCTTCCEEECCCCCCTTCSCCCCCEEEEEEEEEBTTCSCHH------------HH
T ss_pred CCceeccceeEEEeecchHHHhhccccCCCceEEEeCCcCCCCCCCceeeccceEEEEECCCCCHH------------HH
Confidence 457899999999998876554443 23467776 675 221 11 256799999999998 89
Q ss_pred HHHHHHHHcHHH
Q 040870 131 HQWIEFCLQTAR 142 (215)
Q Consensus 131 ~~FInf~lspe~ 142 (215)
.+||+|+++++.
T Consensus 301 ~~fl~~l~s~~~ 312 (408)
T 2uvj_A 301 AMLINFLLNSKE 312 (408)
T ss_dssp HHHHHHHHTSHH
T ss_pred HHHHHHHcCCHH
Confidence 999999998543
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.75 E-value=0.0051 Score=57.38 Aligned_cols=94 Identities=18% Similarity=0.045 Sum_probs=63.4
Q ss_pred HHHHHHHHhccc-ccee--ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC-----CCceeeeceEEEeCC
Q 040870 41 AVQQNLALLGNQ-VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAA 111 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~-----eG~~~~~d~~~I~k~ 111 (215)
++.+++.++... .... ..+...+.|.+|++.+.+.++-........+.++.+. +|. .+......+++|+++
T Consensus 190 ~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~gv~~~P~~~g~~~~~~~g~~~~~i~~~ 269 (694)
T 3dm0_A 190 AGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAA 269 (694)
T ss_dssp HHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCEETTEECCCEEEEEEEEEBTT
T ss_pred HHHHHHHHHHHcCCCCCCCChhhHHHHHhCCCeeEEEcCccchhhHhhcCCcceeecCCCCCCCCCCceeeeEEEEEEcC
Confidence 455666665432 1111 1123457899999999988766555555556677665 453 234456778899999
Q ss_pred CCCcccccCCCCCCChHHHHHHHH-HHHcHHHhCCC
Q 040870 112 SRLETKQIGGRVRGPFPLIHQWIE-FCLQTARALPF 146 (215)
Q Consensus 112 a~~~~~~~~~~~~~~~~~A~~FIn-f~lspe~~~~~ 146 (215)
++|++ +|.+||. |+.+++.+..+
T Consensus 270 s~~~~------------~A~~f~~~~~~~~~~~~~~ 293 (694)
T 3dm0_A 270 SPNKE------------LAKEFLENYLLTDEGLEAV 293 (694)
T ss_dssp CSCHH------------HHHHHHHHTTTSHHHHHHH
T ss_pred CCCHH------------HHHHHHHHHhcCHHHHHHH
Confidence 99998 8999995 88999887544
No 82
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=96.53 E-value=0.0079 Score=52.16 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHhccc-ccee--ccchhhhhhhcCcEEEEEechhcHHHHHH-cCCCeEEE-ecC--C------CceeeeceEE
Q 040870 41 AVQQNLALLGNQ-VRLF--DRTHYLKVFGIGDVWIAVGWSSDVLPAVK-RMSNVAVV-VPK--S------GASLWADLWA 107 (215)
Q Consensus 41 ~a~~~L~~l~~~-v~~~--~~~~~~~~~~~Gev~ia~~w~~~~~~~~~-~~~~v~~v-~P~--e------G~~~~~d~~~ 107 (215)
++.+++.++... .... ..++..+.|.+|++.+.+.++........ .+.++.+. +|. . ++.+...+++
T Consensus 213 ~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~ 292 (419)
T 4aq4_A 213 KHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLW 292 (419)
T ss_dssp HHHHHHHHHHHHTSBCCCCSSSHHHHHHHTTSEEEEEEEGGGHHHHHHHCCSCEEEEECCBCTTCTTCCCCCCCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCcccchhhHHHhhhcCceEEEEeChHHHHHHHhhCCCceEEEeccCCCCCCCCCcceeecCceEE
Confidence 456666665432 1112 22456788999999999988776655543 34456655 442 1 1233334567
Q ss_pred EeCC--CCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCCCC
Q 040870 108 IPAA--SRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPFNT 148 (215)
Q Consensus 108 I~k~--a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~~~ 148 (215)
|+++ ++|++ +|.+||+|+++||.|..+..
T Consensus 293 i~~~~~~~~~~------------aA~~fl~~l~s~e~~~~~~~ 323 (419)
T 4aq4_A 293 VMQGKDKETYT------------GVAKFLDFLAKPENAAEWHQ 323 (419)
T ss_dssp EESSCCHHHHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred EEecchhhhHH------------HHHHHHHHhCCHHHHHHHHH
Confidence 7654 45666 89999999999999866543
No 83
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=96.45 E-value=0.0059 Score=55.39 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.9
Q ss_pred eeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 102 WADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 102 ~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
...+++|+++|+|++ +|.+||+|+.+||.+.
T Consensus 313 ~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~ 343 (502)
T 3vlv_A 313 RPDGWAITATNKNPV------------ETIKLFDFYFGPKGRE 343 (502)
T ss_dssp CSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHH
T ss_pred CCceEEEeCCCCCHH------------HHHHHHHHhcCHHHHH
Confidence 447899999999998 8999999999999873
No 84
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=95.86 E-value=0.012 Score=51.65 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHhccccceeccchhhhhhhcCcEEEEEechhcHHHHHHc------CCCeEEEe---cC-----C--Cceeeec
Q 040870 41 AVQQNLALLGNQVRLFDRTHYLKVFGIGDVWIAVGWSSDVLPAVKR------MSNVAVVV---PK-----S--GASLWAD 104 (215)
Q Consensus 41 ~a~~~L~~l~~~v~~~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~------~~~v~~v~---P~-----e--G~~~~~d 104 (215)
++.+++.++...- .+..+...+.|.+|++.+.+.++......... +.++.+.+ |. . ++.....
T Consensus 235 ~al~~~~~l~~~g-~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 313 (433)
T 4gqo_A 235 ELLTFMSELQKNK-LLLASKATDPFETGTSIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSK 313 (433)
T ss_dssp HHHHHHHHHHHTT-CEECSCCSSHHHHTSEEEEEECTTHHHHHHHHCTTCCBTTTBEEECCCBCGGGTTCSSCCEEEEEE
T ss_pred HHHHHHHHHHHhc-CCChhhHHHHHhCCceeEEEcchHHHHHHHHhchhhhcccccceeeecCCccccCccccceecccc
Confidence 4566666665432 22334456789999999888765544444332 23344443 21 1 1223334
Q ss_pred eEEE--eCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 105 LWAI--PAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 105 ~~~I--~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
+++| +++++|++ +|.+||+|+++++.+
T Consensus 314 ~~~i~~~~~sk~~e------------aA~~fl~~l~s~e~~ 342 (433)
T 4gqo_A 314 GVVMYAQATDKEKE------------AAMDFLKFVYNDDKN 342 (433)
T ss_dssp EEEEBTTSCHHHHH------------HHHHHHHHHTTSHHH
T ss_pred ceEEeecCCchhHH------------HHHHHHHHHcCCHHH
Confidence 4555 56677887 899999999998754
No 85
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=95.43 E-value=0.026 Score=47.08 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=44.0
Q ss_pred hcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 78 SDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 78 ~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
+..+...+ ..++.++++.++..+.+.++.+...++|+. -..+.|++|++|++||+.|.-
T Consensus 173 ~t~l~~~~-~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~--------~~~~~a~~f~~wl~s~~gQ~~ 231 (237)
T 3muq_A 173 GTWLAYQN-KLDLEILFQGDEKLFNPYQVILVNPERYPT--------INYQGAKAFSDWLVNPRGQEL 231 (237)
T ss_dssp HHHHHHGG-GCSCEEEECCCGGGEEEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHH
T ss_pred hHHhhccc-cCCeEEEEcCCCceeeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHH
Confidence 33344443 347999999999999998888887777542 124589999999999999853
No 86
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=93.17 E-value=0.15 Score=42.49 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=59.9
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHHH----Hhccccceecc-chhhhhhhcCcEEEEEechh
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLA----LLGNQVRLFDR-THYLKVFGIGDVWIAVGWSS 78 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~----~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~ 78 (215)
..+++|+||-.|..+-.+..+++....... ..+.+. +...+.....+ ....+.+++++-.||+.-.+
T Consensus 138 g~i~~W~~l~~~~~~i~~~~r~~~sgt~~~--------f~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~aiGy~~~~ 209 (279)
T 4gd5_A 138 GKITNWKELGGNDAPIVVVSREDGSGTRDA--------FQEIVGFKAEELTVNSQISDGSGNIKSLVQGNENAIGYISFS 209 (279)
T ss_dssp TSCCBGGGGTSCSSBCEEEEECTTCHHHHH--------HHHHHTCCGGGSCTTCEEESSHHHHHHHHHHCTTEEEEEEGG
T ss_pred ccccchhhcCCCccceeEEeCCCCchHHHH--------HHHHHhccCcccCccccccCCcccceeEEeecCccceecchh
Confidence 457899999777655444444332111111 011111 11222222222 34556777888777754211
Q ss_pred cHHHHHHcCCCeEEEecC-----CCc-eeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 79 DVLPAVKRMSNVAVVVPK-----SGA-SLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 79 ~~~~~~~~~~~v~~v~P~-----eG~-~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
.... .....++..+.|. .|. ++.-..+.|.+++++.+ .|++|++|++|++.|.
T Consensus 210 ~~~~-~~~~~~v~gv~pt~~~i~~g~YPl~rp~~~v~~~~~~~~------------~ak~F~~f~~S~egQ~ 268 (279)
T 4gd5_A 210 YVDD-SVSAVKVDGVEATPENVLNKSYKVSRPFLAVYKEENLTE------------SGKSFIDFILSEEGQD 268 (279)
T ss_dssp GCCT-TEEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTTCCH------------HHHHHHHHHHSHHHHH
T ss_pred hhhc-cccEeeecCccCCHHHhhcCCCCcEEEEEEEEcCCCCCH------------HHHHHHHHHcCHHHHH
Confidence 1100 0001122223342 122 34334455677777765 8999999999999885
No 87
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=91.25 E-value=0.49 Score=39.29 Aligned_cols=52 Identities=4% Similarity=0.010 Sum_probs=35.9
Q ss_pred cCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCC
Q 040870 86 RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALP 145 (215)
Q Consensus 86 ~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~ 145 (215)
...++++++-.+...+....+.+..-++|+. -..+.|++|++|+.||+.|..
T Consensus 181 ~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~ 232 (236)
T 3lr1_A 181 AKTDLVILFQGEKGLFNPYGIMAVNPKKFPH--------VKYDLAMKLIDYVTGPEGLKI 232 (236)
T ss_dssp TTBCCEEEEEC---CCEEEEEEEECTTTCTT--------SCHHHHHHHHHHHTSHHHHHH
T ss_pred CCCCeEEEEcCCcceeeceeEEEECcccCCc--------cCHHHHHHHHHHhcCHHHHHH
Confidence 3457899998877788887776665555441 124599999999999999854
No 88
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=89.88 E-value=0.56 Score=39.16 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=36.3
Q ss_pred cCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhCCC
Q 040870 86 RMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARALPF 146 (215)
Q Consensus 86 ~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~~~ 146 (215)
...++.+++-.+...+.+.++.+..-.+|+. -..+.|++|++||.||+.|..+
T Consensus 185 ~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i 237 (242)
T 3kn3_A 185 GKPPMVIVLEGDNTLKNFYSIMAVNPKRCEK--------ADYKGAKQFIDWIVSEKMQAEI 237 (242)
T ss_dssp SSCSCEEEECCCGGGCCEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCeEEEEcCCcceEeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHH
Confidence 3456888887666666666665555444321 1245999999999999998643
No 89
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=82.55 E-value=13 Score=29.30 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=39.0
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE-ecC---------CC-ceeeeceEE-EeCCCCCcccccCCCCCCCh
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV-VPK---------SG-ASLWADLWA-IPAASRLETKQIGGRVRGPF 127 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v-~P~---------eG-~~~~~d~~~-I~k~a~~~~~~~~~~~~~~~ 127 (215)
...+++.+|+..+++.....+ ...+..+ ++. .| ......... ..++ ++..
T Consensus 189 ~~~~~v~~g~~gi~~~p~~~~------~~~l~~~~l~~~~p~~~~i~~~~~~~~~~~~l~~~~~-~~~~----------- 250 (290)
T 1twy_A 189 MMKTLVNHNTQAVGFISIGSV------DKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSD-NADE----------- 250 (290)
T ss_dssp HHHHHHHHCTTEEEEEEGGGC------CTTSEECEETTBCCCHHHHHTTCSCCEEEEEEEECTT-TCCH-----------
T ss_pred HHHHHHhcCCCcEEEeeHHHh------hCCceEeEecCCCCCHHHHhcCCCccEEEEEEEEcCC-CCCH-----------
Confidence 456788999777888776543 1234332 221 11 122233333 3455 5544
Q ss_pred HHHHHHHHHHHcHHHhC
Q 040870 128 PLIHQWIEFCLQTARAL 144 (215)
Q Consensus 128 ~~A~~FInf~lspe~~~ 144 (215)
.+.+|++|+.+.+.|.
T Consensus 251 -~~~~f~~~l~~~~~q~ 266 (290)
T 1twy_A 251 -QTKEFIAFLKSESAKK 266 (290)
T ss_dssp -HHHHHHHHHHSHHHHH
T ss_pred -HHHHHHHHHhCHHHHH
Confidence 8999999999988764
No 90
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=79.44 E-value=9.7 Score=31.32 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=44.8
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCC---------CceeeeceEEEeCC--CCCcccccCCCCCCChH
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKS---------GASLWADLWAIPAA--SRLETKQIGGRVRGPFP 128 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~e---------G~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~ 128 (215)
+...++.+|++++++.|......+...+ ...++.... |.......+++.++ ..|++
T Consensus 178 ~~~~al~~G~vDa~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~------------ 244 (346)
T 3qsl_A 178 GAVTALRSGQIDAISNTDPVVSMLETSG-DIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQAFVDANPN------------ 244 (346)
T ss_dssp HHHHHHHHTSCSEEEEETTHHHHHHHTT-CEEEEEECSSHHHHHHHHSSCCCCEEEEEEHHHHHHCHH------------
T ss_pred HHHHHHHcCCccEEEecchhHHHHHhCC-CeEEEEecccccchhhhcCCCCceEEEEECHHHHHHCHH------------
Confidence 6778999999999999988887777666 455554321 22233344444443 24676
Q ss_pred HHHHHHHHHHcH
Q 040870 129 LIHQWIEFCLQT 140 (215)
Q Consensus 129 ~A~~FInf~lsp 140 (215)
...+|++-+.+.
T Consensus 245 ~~~~~~~a~~~a 256 (346)
T 3qsl_A 245 TAQALTNAIVRA 256 (346)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788999866543
No 91
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=76.13 E-value=13 Score=30.71 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=45.1
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCC--CCCcccccCCCCCCChHHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
.+...+|.+|++++++.|......+..++ .+++++...+.....+++++.++ ..|++ ...+|+.-
T Consensus 168 ~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 234 (324)
T 3ksx_A 168 ANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLLANGEGLGLTGGFFLSSRRYATAWGP------------FVQQVMGT 234 (324)
T ss_dssp HHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEEecccccCCCccEEEECHHHHHHCHH------------HHHHHHHH
Confidence 46778899999999999988777665553 35555544444434444544432 23665 78888887
Q ss_pred HHcH
Q 040870 137 CLQT 140 (215)
Q Consensus 137 ~lsp 140 (215)
+...
T Consensus 235 ~~~a 238 (324)
T 3ksx_A 235 LNQA 238 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 92
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=74.98 E-value=13 Score=28.23 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=47.2
Q ss_pred HHHhccccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCCCCCcccccCCC
Q 040870 46 LALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 122 (215)
Q Consensus 46 L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~ 122 (215)
|.+...++..+.+ .+..+++.+|++++++.+...+....++.. .+.++ +.. .....-++++.++.+..+
T Consensus 131 l~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~k~~~l~~------ 202 (233)
T 1ii5_A 131 ANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVT-EIR-VSLEPYGFVLKENSPLQK------ 202 (233)
T ss_dssp HHHTTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEC-SCC-SEEEEEEEEEETTCTTHH------
T ss_pred HHHcCCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEe-Ccc-ccccceEEEEcCCchHHH------
Confidence 3333334445554 467899999999999998877766555543 34433 221 222344677788755333
Q ss_pred CCCChHHHHHHHHHHH
Q 040870 123 VRGPFPLIHQWIEFCL 138 (215)
Q Consensus 123 ~~~~~~~A~~FInf~l 138 (215)
...++|.-+.
T Consensus 203 ------~~~~~l~~l~ 212 (233)
T 1ii5_A 203 ------TINVEMLNLL 212 (233)
T ss_dssp ------HHHHHHHHHH
T ss_pred ------HHHHHHHHHH
Confidence 5666666654
No 93
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=74.12 E-value=11 Score=29.09 Aligned_cols=67 Identities=6% Similarity=0.018 Sum_probs=42.1
Q ss_pred HHHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeC
Q 040870 44 QNLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 110 (215)
Q Consensus 44 ~~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k 110 (215)
+.|.+..++ +..+.+ .+..+++.+|++++.+.+...+....++.+.+..+.+..-.....-++++++
T Consensus 138 ~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 138 KFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp HHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 344444443 444544 4678999999999999998877777766666776654321222333456666
No 94
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=69.87 E-value=4.4 Score=33.72 Aligned_cols=45 Identities=4% Similarity=0.060 Sum_probs=30.9
Q ss_pred CeEEEecC----CCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHH-HhCC
Q 040870 89 NVAVVVPK----SGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTA-RALP 145 (215)
Q Consensus 89 ~v~~v~P~----eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe-~~~~ 145 (215)
.+.++... +....+.-.+++.++.++.. .|++|++|+++++ .|.-
T Consensus 218 ~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~s~------------aa~~Fi~~l~s~e~gq~i 267 (294)
T 3cvg_A 218 QMVIYKKGTNDADDPLLNPAHLLVGARAKNAE------------MAKEFAKWLVSKEGGQKV 267 (294)
T ss_dssp TCEEEEECCSCTTCTTEEEEEEEEBSSCSSHH------------HHHHHHHHHHSTTTHHHH
T ss_pred ceEEEecCCCCCCcceeeEEEEEEeCCCCCHH------------HHHHHHHHHcCcHHHHHH
Confidence 46655332 33444555667778877766 8999999999998 7743
No 95
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=67.67 E-value=17 Score=30.10 Aligned_cols=75 Identities=9% Similarity=0.013 Sum_probs=49.7
Q ss_pred ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 040870 57 DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 57 ~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
...+....+.+|++++++.++..+..+-.....=.+.+-+ -..-|+..+++-++-++.+ ..++|+.-
T Consensus 157 ~aaql~~al~dg~vDaavin~n~a~~agl~p~~dal~~E~-~~~~y~n~i~vr~~~~~~~------------~~k~lv~~ 223 (246)
T 4ef1_A 157 DPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEK-ESSPYANIIAVRKEDENNE------------NVKKLVKV 223 (246)
T ss_dssp CGGGHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECS-CCGGGCEEEEEEGGGTTCH------------HHHHHHHH
T ss_pred CHHHHHHHhccccccEEEEechHHHHcCCCCccCceEEcC-CCCCeEEEEEEeccccCCH------------HHHHHHHH
Confidence 4456778899999999999987665542110001122221 2235777777777666655 89999999
Q ss_pred HHcHHHhC
Q 040870 137 CLQTARAL 144 (215)
Q Consensus 137 ~lspe~~~ 144 (215)
+-|++++.
T Consensus 224 ~~s~~v~~ 231 (246)
T 4ef1_A 224 LRSKEVQD 231 (246)
T ss_dssp HHSHHHHH
T ss_pred HcCHHHHH
Confidence 99999864
No 96
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=67.31 E-value=5.2 Score=33.35 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=24.1
Q ss_pred eeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 100 SLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 100 ~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
+++-..+.+.++.+.+ ++.+||+|++|++.|.
T Consensus 101 PlsRply~y~~~~~~~-------------~vk~Fl~f~lS~~GQ~ 132 (265)
T 4h1x_A 101 PLQRPFNIVWSSNLSK-------------LGQDFISFIHSKQGQQ 132 (265)
T ss_dssp CSEEEEEEEECTTCCH-------------HHHHHHHHHHBHHHHH
T ss_pred CeEEEEEEEECCCCCH-------------HHHHHHHHHhhcccce
Confidence 5666666666665443 7999999999999884
No 97
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=66.68 E-value=31 Score=28.09 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=42.2
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCL 138 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~l 138 (215)
.+...++ |++++++.|+..+..+......-.+.+-..+. .+...+++.++-.|++ ...+|++-+.
T Consensus 156 ~~~~~al--~~VDaa~i~~~~a~~agl~~~~~~l~~e~~~~-~~~nviv~r~~~~~~~------------~vk~l~~a~~ 220 (241)
T 1xs5_A 156 ALLPRVF--DQVDGAVINGNYAIMAGLSARRDGLAVEPDAS-AYANVLVVKRGNEADA------------RVQAVLRALC 220 (241)
T ss_dssp GGHHHHG--GGSSEEEECHHHHHHTTCCTTTTCSEECSCGG-GGCEEEEEETTCTTCH------------HHHHHHHHHT
T ss_pred HHHHHhh--hccCEEEECcHHHHHcCCCcccceEEEcCCCC-ceEEEEEEECCccChH------------HHHHHHHHHC
Confidence 3444555 69999999986554332111111222222222 3555566666656665 8999999999
Q ss_pred cHHHhC
Q 040870 139 QTARAL 144 (215)
Q Consensus 139 spe~~~ 144 (215)
|++...
T Consensus 221 s~~v~~ 226 (241)
T 1xs5_A 221 GGRVRT 226 (241)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 998753
No 98
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=66.13 E-value=14 Score=28.76 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=39.6
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeee--ceEEEeCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA--DLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~--d~~~I~k~ 111 (215)
++..+.+ .+..+++.+|++|+++.+...+....++.+.+.++-+.-....|. -+++++++
T Consensus 161 ~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 223 (268)
T 3qax_A 161 CVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD 223 (268)
T ss_dssp CEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT
T ss_pred eEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC
Confidence 3444544 467899999999999999988888877777666654222221111 35666765
No 99
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=65.82 E-value=26 Score=28.37 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=42.7
Q ss_pred hhhhhhhcCcEEEEEe-c-hhcHHHHHHcCCCeEEEecC-CCc-eeeeceEEEeCC--CCCcccccCCCCCCChHHHHHH
Q 040870 60 HYLKVFGIGDVWIAVG-W-SSDVLPAVKRMSNVAVVVPK-SGA-SLWADLWAIPAA--SRLETKQIGGRVRGPFPLIHQW 133 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~-w-~~~~~~~~~~~~~v~~v~P~-eG~-~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~F 133 (215)
+...++.+|+++++++ | ......+...|.++.+..+. .|. ....+.+++.++ ..|++ ...+|
T Consensus 143 ~~~~al~~G~vDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~------------~v~~~ 210 (302)
T 3ix1_A 143 ELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGE------------VLAAF 210 (302)
T ss_dssp CHHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCHH------------HHHHH
T ss_pred cHHHHHhCCCCCEEEEeeecchHHHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHHHHCHH------------HHHHH
Confidence 4567888999999874 3 34445566677766655443 344 233344554443 24666 88899
Q ss_pred HHHHHcH
Q 040870 134 IEFCLQT 140 (215)
Q Consensus 134 Inf~lsp 140 (215)
++-+...
T Consensus 211 ~~a~~~a 217 (302)
T 3ix1_A 211 WRAALKG 217 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 100
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=64.88 E-value=14 Score=28.41 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=39.5
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeee--ceEEEeCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA--DLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~--d~~~I~k~ 111 (215)
++..+.+ .+..+++.+|++++++.+...+....++...+.++-+.....-|. -++++.++
T Consensus 140 ~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 202 (242)
T 3del_B 140 HIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD 202 (242)
T ss_dssp CEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT
T ss_pred eEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC
Confidence 3444544 467899999999999999888877777776666663222121111 35677776
No 101
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=64.25 E-value=25 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=37.2
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeec-eEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD-LWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d-~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++|+++.+...+.....+.+.+.++.+.... ..- ++++.++
T Consensus 188 ~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~ 246 (291)
T 2yjp_A 188 LLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGP--AEFIAPAVQKG 246 (291)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSS--CEEECCEEETT
T ss_pred EEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccC--CcceEEEEeCC
Confidence 444444 46788999999999999988777766666566665432211 112 5667765
No 102
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=62.29 E-value=24 Score=27.17 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=50.6
Q ss_pred CCCCChhhhcCccCCCceeeecChhHHHHHHHHccHHHHHHHHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcH
Q 040870 4 NGFKDWKDLWLPELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDV 80 (215)
Q Consensus 4 ~~p~sW~dL~dp~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~ 80 (215)
..++|++||-++. -+|++...... ...|.+..++ +..+.+ .+..+++.+|++++.+.+...+
T Consensus 103 ~~i~~~~dL~~~g--~~i~v~~g~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 167 (245)
T 3k4u_A 103 KGVKSYKDLDKPE--LTLVTKFGVSA-------------EYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFN 167 (245)
T ss_dssp TTCCSGGGGCCSS--CEEEEETTSHH-------------HHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHH
T ss_pred cccCCHHHhccCC--cEEEEeCCcHH-------------HHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHH
Confidence 4567788876521 25676644211 1233443333 444544 4678999999999999987766
Q ss_pred HHHHHcCC--CeEEEecCCCceeeeceEEEeCC
Q 040870 81 LPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 81 ~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
.....+.. .+..+ +..-. ...-++++.++
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~k~ 198 (245)
T 3k4u_A 168 VAFMAQKGQGYLVHL-DTSLT-YEPLGWAIKKG 198 (245)
T ss_dssp HHHHHHTTTTTEEEE-CCCCS-CEEECCEECTT
T ss_pred HHHHhcCCccceeec-CCCcc-cccEEEEEcCC
Confidence 65543332 34333 22212 23345677765
No 103
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=61.52 E-value=16 Score=27.45 Aligned_cols=60 Identities=13% Similarity=-0.078 Sum_probs=36.2
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCCCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASR 113 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~a~ 113 (215)
++..+.+ .+..+++.+|++++.+.+.........+.. .+.++-+. .....-+++++++.+
T Consensus 133 ~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 195 (228)
T 2pyy_A 133 SVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSI--LREESYGIILPNNSP 195 (228)
T ss_dssp EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEECCEECTTCT
T ss_pred ceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEeccc--ccceeEEEEEeCChH
Confidence 4444444 467899999999999998776666555443 45543221 112334566666543
No 104
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=61.07 E-value=23 Score=27.56 Aligned_cols=59 Identities=8% Similarity=-0.066 Sum_probs=37.4
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecC-CCceeeeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPK-SGASLWADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~-eG~~~~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++|+++.+........++++.+...... .......-++++.++
T Consensus 174 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 174 LVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp EEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred EEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 444544 46789999999999999988877766666666554321 111122335666665
No 105
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=59.25 E-value=22 Score=28.58 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=37.1
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEe-cCCCceeeeceEEEeCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVV-PKSGASLWADLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~-P~eG~~~~~d~~~I~k~ 111 (215)
++..+.+ .+..+++.+|++++++.+...+....++.. ++.++- +.. .......+++.++
T Consensus 185 ~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~~~k~ 247 (283)
T 2yln_A 185 QLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPA-DEKVGSGLIVNKG 247 (283)
T ss_dssp EEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCG-GGCEEECCEEESS
T ss_pred eEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCccc-CCcccEEEEEeCC
Confidence 3444444 467789999999999999877766554443 366654 221 1123446777776
No 106
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=58.84 E-value=50 Score=25.98 Aligned_cols=66 Identities=14% Similarity=-0.065 Sum_probs=40.7
Q ss_pred HHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHHHHHHc--CCCeEEEecCCCceeeeceEEEeCC
Q 040870 45 NLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 45 ~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~--~~~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
.|.+..++ +..+.+ .+..+++.+|++++++.....+....++ ..++.++-+.... -..-++++.++
T Consensus 153 ~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~k~ 223 (267)
T 3mpk_A 153 LLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLP-PAEIALATTRG 223 (267)
T ss_dssp HHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSC-CEEEEEEEETT
T ss_pred HHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCC-ceeEEEEEcCC
Confidence 34444333 444544 4678999999999999997766555544 3457776543222 23346677776
No 107
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=58.82 E-value=25 Score=26.33 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCC--eEEEecC-CCcee--eeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSN--VAVVVPK-SGASL--WADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~--v~~v~P~-eG~~~--~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++|+++.+...+....++... +.++-+. ..... ..-++++.++
T Consensus 134 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (227)
T 3tql_A 134 IQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKG 198 (227)
T ss_dssp EEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETT
T ss_pred EEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCC
Confidence 434444 4678999999999999998877666555433 6665321 11211 2235677776
No 108
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=58.01 E-value=25 Score=30.59 Aligned_cols=33 Identities=6% Similarity=-0.132 Sum_probs=25.1
Q ss_pred eccchhhhhhhcCcEEEEEechhcHHHHHHcCC
Q 040870 56 FDRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMS 88 (215)
Q Consensus 56 ~~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~ 88 (215)
+...+....|.+|+++..+.|......+..++.
T Consensus 191 ~~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 191 VPPAQMVANVKVNAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp CCGGGHHHHHHTTSCSEEEEETTHHHHHHHHTS
T ss_pred CCHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCC
Confidence 344567788999999999999877666666654
No 109
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=56.40 E-value=32 Score=27.11 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=38.1
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
++..+.+ .+..+++.+|++++++.+...+....++.. ++.++-+........-.+++.++
T Consensus 171 ~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~ 233 (272)
T 2pvu_A 171 HIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKN 233 (272)
T ss_dssp TEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETT
T ss_pred eEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCC
Confidence 3445544 467889999999999998877766655543 26555332211223446778887
No 110
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=55.71 E-value=25 Score=26.50 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=29.9
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV 93 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v 93 (215)
+..+.+ .+..+++.+|++++++.+........++..++.++
T Consensus 136 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~ 177 (229)
T 2y7i_A 136 PVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIM 177 (229)
T ss_dssp EEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEEC
T ss_pred EEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEe
Confidence 334444 46788999999999999988777666665566655
No 111
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=55.71 E-value=6 Score=32.50 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=42.3
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEE-----EecC------CCceeeeceEEEeCCCCCcccccCCCCCCChH
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAV-----VVPK------SGASLWADLWAIPAASRLETKQIGGRVRGPFP 128 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~-----v~P~------eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~ 128 (215)
...+.++++.-.||+.-.+.+. ..++. +.|. ++.++.-..+.+.++.+ ..
T Consensus 158 ~i~~~V~~~~~aIg~~~~~~~~------~~l~~l~i~~v~pt~~~i~~g~ypl~r~~~~~~~~~~-~~------------ 218 (264)
T 4ecf_A 158 MVRSIVATTPGAISYVAFSYVN------KTVQALSLNHVAPTEVNVTTNDWRIWSYEHLYTKGHP-TG------------ 218 (264)
T ss_dssp HHHHHHHHSTTEEEEEEGGGCC------TTSEECEETTBCCCHHHHHTTSSCCEEEEEEEEESSC-CH------------
T ss_pred HHHHHHhcCCCcEEEEEhHHhh------CCceEEEEccccCCHHHhhcCCCCceeEEEEEEcCCC-cH------------
Confidence 4557778877667765433321 12322 2232 13355555555555433 22
Q ss_pred HHHHHHHHHHcHHHhCCCCCCCCC
Q 040870 129 LIHQWIEFCLQTARALPFNTRVKL 152 (215)
Q Consensus 129 ~A~~FInf~lspe~~~~~~~~~~~ 152 (215)
.+.+|++|+++++.|..+....+|
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~~G~ 242 (264)
T 4ecf_A 219 LTKAFITYVQSPAIQNTLVRQLGY 242 (264)
T ss_dssp HHHHHHHHHHSHHHHTTHHHHTTC
T ss_pred HHHHHHHHHhCchhHHHHHHHCCC
Confidence 899999999999988654443443
No 112
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=54.61 E-value=30 Score=25.85 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++++++.+........++.. ++.++-+. .....-++++.++
T Consensus 133 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~ 192 (226)
T 1wdn_A 133 LRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDS--LEAQQYGIAFPKG 192 (226)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEECTT
T ss_pred EEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCC--cccCceEEEEeCC
Confidence 333444 467789999999999998877766655543 46554321 1122334566665
No 113
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=54.33 E-value=7.3 Score=22.02 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcHH
Q 040870 128 PLIHQWIEFCLQTA 141 (215)
Q Consensus 128 ~~A~~FInf~lspe 141 (215)
.+|++||+|+++..
T Consensus 9 ~aakdFv~WL~ngk 22 (31)
T 3c5t_B 9 EAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCC
Confidence 37999999999643
No 114
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=53.89 E-value=13 Score=30.35 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=43.4
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCC--CCCcccccCCCCCCChHHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
.+..+++.+|++++++.|......+..++ .+.++....+.......+++.+. ..|++ .+.+|++-
T Consensus 142 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 208 (308)
T 2x26_A 142 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQGVLAT 208 (308)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 45678899999999999887766655544 46666543343323333443322 24665 78888887
Q ss_pred HHc
Q 040870 137 CLQ 139 (215)
Q Consensus 137 ~ls 139 (215)
+.+
T Consensus 209 l~~ 211 (308)
T 2x26_A 209 FSE 211 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 115
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=53.39 E-value=20 Score=28.87 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=43.0
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec-------CCCceeeeceEEEeCCCCCcccccCCCCCCChHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP-------KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIH 131 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P-------~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 131 (215)
.+..+++.+|++|+++.|......+.+.| +..++. ..|.+.....+++.++- |++ +..
T Consensus 134 ~~~~~al~~G~vDa~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~p~------------~v~ 198 (280)
T 1zbm_A 134 DRIIQAVLDEEVDAGLLIHEGQITYADYG--LKCVLDLWDWWSEQVKLPLPLGLNAIRRDL-SVE------------VQE 198 (280)
T ss_dssp GGHHHHHHTTSSSEEEECSGGGGTGGGGT--CEEEEEHHHHHHTTCSSCEEEEEEEEETTS-CHH------------HHH
T ss_pred HHHHHHHHcCCCCEEEEechHHhHHHhcC--CeEeccHHHHHHHhhCCCCCeeEEEEcccC-CHH------------HHH
Confidence 46778899999999998865444444444 333332 12444434456666665 776 888
Q ss_pred HHHHHHHcH
Q 040870 132 QWIEFCLQT 140 (215)
Q Consensus 132 ~FInf~lsp 140 (215)
+|++-+.+.
T Consensus 199 ~~~~a~~~a 207 (280)
T 1zbm_A 199 EFLRAMRES 207 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877653
No 116
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=48.75 E-value=60 Score=26.71 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=41.1
Q ss_pred CcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHhC
Q 040870 68 GDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARAL 144 (215)
Q Consensus 68 Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~~ 144 (215)
+++++++.|+..+..+--....=.+.+-+ ...-|+..+++-++-++.+ ..++|+.-+-|++++.
T Consensus 164 ~dvD~avin~n~a~~agl~p~~dal~~E~-~~~~y~nviavr~~~~d~~------------~~k~lv~a~~s~evk~ 227 (240)
T 3tqw_A 164 GDVDLAAINTNYAIPAGLSPSRDALLTEG-PNSPYANVVAVREDDKNDP------------RLKQLVSALHSPAVLS 227 (240)
T ss_dssp TTCSEEEECHHHHGGGTCCTTTTCSEECC-SSSSCEEEEEEEGGGTTCH------------HHHHHHHHHTSHHHHH
T ss_pred cCccEEEEcchHHHHcCCCcccCeeEEcC-CCCCeeEEEEEeccccCCH------------HHHHHHHHHCCHHHHH
Confidence 78999999976555443221111222221 1234777888777766655 8999999999998764
No 117
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=47.79 E-value=42 Score=25.20 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCChhhhcCccCCC-ceeeecChhHHHHHHHHccHHHHHHHHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHH
Q 040870 6 FKDWKDLWLPELAG-RISMVNSPREVIGTQAAAGRIAVQQNLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVL 81 (215)
Q Consensus 6 p~sW~dL~dp~~~G-ri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~ 81 (215)
++|++|| +| +|++..... ..+.|.+..+. +..+.+ .+..+++.+|++++.+.+.....
T Consensus 109 ~~~~~dL-----~g~~i~~~~g~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 109 AAGLEDL-----RGRKVALHRDGI-------------MHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGM 170 (234)
T ss_dssp CSSGGGG-----TTSCEEEETTSH-------------HHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred CCCHHHh-----CCCEEEEEeCch-------------HHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHHHH
Confidence 6677776 33 566654321 12344444433 334444 46789999999999999877666
Q ss_pred HHHHcC--CCeEEEecCCCceeeeceEEEeCC
Q 040870 82 PAVKRM--SNVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 82 ~~~~~~--~~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
...++. .++..+-+. .....-++++.++
T Consensus 171 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 200 (234)
T 3h7m_A 171 YIIRENRLTNLVPVARS--IAAQRYGYAVRQG 200 (234)
T ss_dssp HHHHHTTCTTEEEEEEE--EEEEEEEEEEETT
T ss_pred HHHHhcCCCceEEeccc--cCCCceEEEEeCC
Confidence 555443 345544321 1112234566665
No 118
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=46.63 E-value=10 Score=21.27 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHc
Q 040870 128 PLIHQWIEFCLQ 139 (215)
Q Consensus 128 ~~A~~FInf~ls 139 (215)
..|++||+|++.
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 379999999985
No 119
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=46.58 E-value=66 Score=24.56 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHHHhccccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcC-CCeEEEe
Q 040870 45 NLALLGNQVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRM-SNVAVVV 94 (215)
Q Consensus 45 ~L~~l~~~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~-~~v~~v~ 94 (215)
.|.+...++..+.+ .+..+++.+|++++.+.+...+....++. .++.++-
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~ 171 (232)
T 3i6v_A 120 YIAESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVG 171 (232)
T ss_dssp HHHHSSSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEE
T ss_pred HHHhcCCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEec
Confidence 44444444555655 46789999999999999987776655543 5666654
No 120
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=45.64 E-value=11 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcH
Q 040870 128 PLIHQWIEFCLQT 140 (215)
Q Consensus 128 ~~A~~FInf~lsp 140 (215)
.+|++||+|+++.
T Consensus 17 ~aak~fl~wL~~~ 29 (33)
T 2l63_A 17 LAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3799999999964
No 121
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=45.63 E-value=15 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=32.9
Q ss_pred eecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe
Q 040870 55 LFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV 94 (215)
Q Consensus 55 ~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~ 94 (215)
.+.+ ....+++++|++++|++....+..++.+|.++..+.
T Consensus 44 ~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~ 84 (342)
T 4esw_A 44 EPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIG 84 (342)
T ss_dssp EESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEE
T ss_pred eCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEE
Confidence 3444 457789999999999999999999999998887663
No 122
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=45.45 E-value=64 Score=25.67 Aligned_cols=57 Identities=9% Similarity=-0.111 Sum_probs=36.6
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeec-eEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD-LWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d-~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++|+++.+........++...+.++-+.- ..... ++++.++
T Consensus 177 ~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~k~ 235 (292)
T 1xt8_A 177 TLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKEL--GNKDVIAPAVKKG 235 (292)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEE--EEEEEECCEEETT
T ss_pred EEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEccccc--ccCceeEEEEeCC
Confidence 334444 467899999999999999887777666655566553211 11122 5667765
No 123
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=44.58 E-value=26 Score=29.15 Aligned_cols=72 Identities=1% Similarity=-0.193 Sum_probs=43.6
Q ss_pred ccchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeee-ceEEEeCC--CCCcccccCCCCCCChHHHHHH
Q 040870 57 DRTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA-DLWAIPAA--SRLETKQIGGRVRGPFPLIHQW 133 (215)
Q Consensus 57 ~~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~-d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~F 133 (215)
...+...++.+|++++++.|......+..++....+..+.+-..... +.+++.++ ..|++ ...+|
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~v~~~ 257 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKD------------VAQAF 257 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHH------------HHHHH
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHH------------HHHHH
Confidence 33467789999999999999887777766665322333322111122 23333332 23666 78889
Q ss_pred HHHHHcH
Q 040870 134 IEFCLQT 140 (215)
Q Consensus 134 Inf~lsp 140 (215)
++-+.+.
T Consensus 258 ~~a~~~a 264 (341)
T 3un6_A 258 VQDYKKS 264 (341)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 124
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=43.99 E-value=71 Score=26.48 Aligned_cols=29 Identities=10% Similarity=-0.178 Sum_probs=21.1
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMS 88 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~ 88 (215)
.+...+|.+|++++++.|... ..+...+.
T Consensus 156 ~~~~~al~~G~vDa~~~~~~~-~~~~~~g~ 184 (348)
T 3uif_A 156 QVGAAALASGTVDGFFSLFDS-YILEDRGV 184 (348)
T ss_dssp HHHHHHHHHTSSSEEEESTTH-HHHHHTTS
T ss_pred HHHHHHHHcCCCCEEEechHH-HHHHhcCC
Confidence 466789999999999998754 34444553
No 125
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=43.97 E-value=43 Score=25.82 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=35.3
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcC--CCeEEEecCCCceeeeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~--~~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++++++.+...+....++. ..+..+.|-.+.....-.+++.++
T Consensus 149 ~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 210 (257)
T 2q88_A 149 VIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKG 210 (257)
T ss_dssp EEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGG
T ss_pred EEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCC
Confidence 444444 36788999999999999887766554433 245554442222223334566665
No 126
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=43.45 E-value=23 Score=28.88 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcHHHhCCC
Q 040870 129 LIHQWIEFCLQTARALPF 146 (215)
Q Consensus 129 ~A~~FInf~lspe~~~~~ 146 (215)
++.+|++|+++++.|..+
T Consensus 219 ~~~~F~~~~~s~~gq~~~ 236 (265)
T 4exl_A 219 LAAEFLNFVLSDETQEGI 236 (265)
T ss_dssp HHHHHHHHHHSHHHHHTH
T ss_pred HHHHHHHHHhCcchHHHH
Confidence 899999999999988433
No 127
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=43.23 E-value=42 Score=28.62 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCC---e-----EEEecC-----------------------------CCceee
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSN---V-----AVVVPK-----------------------------SGASLW 102 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~---v-----~~v~P~-----------------------------eG~~~~ 102 (215)
...+.++++...||+.-.+.+..+...+.+ | .++.|. ++.++.
T Consensus 209 ~v~~~V~~~~~aIgyv~~~~v~~~~~~~l~~~~i~~~~G~~v~pt~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~YPi~ 288 (350)
T 1pc3_A 209 GMVTGCAETPGCVAYIGISFLDQASQRGLGEAQLGNSSGNFLLPDAQSIQAAAAGFASKTPANQAISMIDGPAPDGYPII 288 (350)
T ss_dssp HHHHHHHHSTTEEEEEEGGGHHHHHHTTCEECEEECTTSCEECCSHHHHHHHHTTTTTCCCTTCCCCCTTCSCTTCCSCE
T ss_pred HHHHHHhcCCCeEEEechHHhhhhhhcCcceEEEEcCCCCEeCCCHHHHHHHHhhccCCcccccccccccCCCCCCCcee
Confidence 456788888877887755554332222221 1 246664 344566
Q ss_pred eceEEEeCCCCCcccccCCCCCCChHHHHHHHHHHHcHHHh
Q 040870 103 ADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFCLQTARA 143 (215)
Q Consensus 103 ~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~lspe~~ 143 (215)
-..+.+....+... ...+.+.+||+|++++ .|
T Consensus 289 r~~~~~~~~~~~~~--------~~~~~~~~Fl~~~~s~-gq 320 (350)
T 1pc3_A 289 NYEYAIVNNRQKDA--------ATAQTLQAFLHWAITD-GN 320 (350)
T ss_dssp EEEEEEEESBCSSH--------HHHHHHHHHHHHHTTG-GG
T ss_pred eeeeeeeecccCCc--------hhHHHHHHHHHHHHcC-cc
Confidence 56565555443210 0013799999999987 55
No 128
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=42.08 E-value=48 Score=25.53 Aligned_cols=67 Identities=19% Similarity=0.045 Sum_probs=41.1
Q ss_pred HHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--CeEEEecCCCceeeeceEEEeCCCC
Q 040870 45 NLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASR 113 (215)
Q Consensus 45 ~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--~v~~v~P~eG~~~~~d~~~I~k~a~ 113 (215)
+|.+..+. +..+.+ .+..+++.+|++++.+.+...+....++.. ++.++-+. .....-+++++++.+
T Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~ 215 (249)
T 4f3p_A 144 WIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSP 215 (249)
T ss_dssp HHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEEETTCT
T ss_pred HHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCC--CCCccEEEEEcCCch
Confidence 44444333 444544 367899999999999999887776665543 35554321 122233567777765
No 129
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=41.46 E-value=92 Score=26.03 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHH-hccccceec--c-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec--CCCceeeeceEEEeCCCCC
Q 040870 42 VQQNLAL-LGNQVRLFD--R-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASRL 114 (215)
Q Consensus 42 a~~~L~~-l~~~v~~~~--~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P--~eG~~~~~d~~~I~k~a~~ 114 (215)
..+.|.+ +.-.|.... + +...+.+.+|++|+++.-......+..+..-..+..| ..|...+...+++.++++-
T Consensus 36 l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i 114 (321)
T 3p7i_A 36 FLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPI 114 (321)
T ss_dssp HHHHHHHHHTSCEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSC
T ss_pred HHHHHHHHHCCCEEEEecCCHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCC
Confidence 3444433 343454432 2 3567899999999998655555555443321223333 3565555556777777654
No 130
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=41.20 E-value=97 Score=24.35 Aligned_cols=57 Identities=7% Similarity=-0.116 Sum_probs=35.4
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC---CeEEEecCCCceeeeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~---~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++++++.+.........+.. .+.++-+. -. ...-+++++++
T Consensus 158 ~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~k~ 218 (287)
T 2vha_A 158 IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKP-QS-QEAYGCMLRKD 218 (287)
T ss_dssp EEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCC-SC-EEEEEEEECTT
T ss_pred EEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCc-cc-cCceEEEEeCC
Confidence 444544 467899999999999998877766665532 35544221 11 23345667765
No 131
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=40.87 E-value=16 Score=20.31 Aligned_cols=12 Identities=0% Similarity=0.340 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHc
Q 040870 128 PLIHQWIEFCLQ 139 (215)
Q Consensus 128 ~~A~~FInf~ls 139 (215)
..|++||+|+++
T Consensus 17 ~aak~fv~wL~~ 28 (29)
T 2g49_C 17 RRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHhc
Confidence 379999999986
No 132
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=40.81 E-value=79 Score=24.40 Aligned_cols=69 Identities=9% Similarity=-0.067 Sum_probs=40.4
Q ss_pred HHHHHHhccc--cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe-cCCCceeeeceEEEeCC
Q 040870 43 QQNLALLGNQ--VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV-PKSGASLWADLWAIPAA 111 (215)
Q Consensus 43 ~~~L~~l~~~--v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~-P~eG~~~~~d~~~I~k~ 111 (215)
.+.+.+..++ +..|.+ .+..+++.+|++|+.+.....+.....+.+...... +..-.....-++++.++
T Consensus 135 ~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~ 207 (243)
T 4h5g_A 135 ESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKN 207 (243)
T ss_dssp HHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESS
T ss_pred HHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCC
Confidence 3455555543 445655 467889999999999887666555555555554432 11111112335777876
No 133
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=40.58 E-value=55 Score=25.52 Aligned_cols=57 Identities=9% Similarity=-0.173 Sum_probs=35.3
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC---CeEEEecCCCceeeeceEEEeCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~---~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
+..+.+ .+..+++.+|++++.+.+...+....++.. ++.++-.. . ....-++++.++
T Consensus 158 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~~~~~k~ 218 (268)
T 3hv1_A 158 VVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAG-Y-EGESFAVGARKV 218 (268)
T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECS-S-CCEEECCEECTT
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCC-C-CCCcEEEEEcCC
Confidence 334444 467899999999999999887766655543 36555322 1 123345566654
No 134
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=40.21 E-value=63 Score=25.42 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=33.1
Q ss_pred ccceecc-chh--hhhhhcCcEEEEEechhcHHHHHH-cCC--CeEEEecCCCceeeeceEEEeCC
Q 040870 52 QVRLFDR-THY--LKVFGIGDVWIAVGWSSDVLPAVK-RMS--NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~--~~~~~~Gev~ia~~w~~~~~~~~~-~~~--~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
++..+.+ .+. .+++.+|+++ ++.....+..... ..+ ++.++.+. ......-++++.++
T Consensus 153 ~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~ 216 (271)
T 2iee_A 153 KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDI-KYMPNKQALVMKKS 216 (271)
T ss_dssp EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSC-CEEEEEECCEEETT
T ss_pred ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCC-CcccceEEEEEcCC
Confidence 5555654 456 8999999999 7777665544433 332 45543121 11223345677776
No 135
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=39.98 E-value=1.1e+02 Score=25.24 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=34.6
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec--CCCceeeeceEEEeCCCCC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP--KSGASLWADLWAIPAASRL 114 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P--~eG~~~~~d~~~I~k~a~~ 114 (215)
+...+.+.+|++|+++.-......+..+..-..+..| ..|...+...+++.++++-
T Consensus 47 ~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i 104 (310)
T 3n5l_A 47 AGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKI 104 (310)
T ss_dssp HHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSC
T ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCC
Confidence 3577899999999998665555555444321223222 3566555556777777654
No 136
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=39.45 E-value=20 Score=21.24 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcHH
Q 040870 128 PLIHQWIEFCLQTA 141 (215)
Q Consensus 128 ~~A~~FInf~lspe 141 (215)
..|++||+|+++-.
T Consensus 17 ~aak~fv~wL~~~k 30 (39)
T 1jrj_A 17 EAVRLFIEWLKNGG 30 (39)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHcCC
Confidence 37999999999744
No 137
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=38.00 E-value=33 Score=26.20 Aligned_cols=59 Identities=8% Similarity=-0.142 Sum_probs=37.4
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCC--------CeEEEecCCCceeeeceEEEeCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMS--------NVAVVVPKSGASLWADLWAIPAA 111 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~--------~v~~v~P~eG~~~~~d~~~I~k~ 111 (215)
++..+.+ .+..+++.+|++++.+.+...+....++.+ ++.++-+.-+ ....-++++.++
T Consensus 133 ~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~k~ 200 (237)
T 3kzg_A 133 QVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKIS-IGEGYSIMANPD 200 (237)
T ss_dssp EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEE-CTTCBCCEECGG
T ss_pred cEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccc-cCccEEEEEcCC
Confidence 3444544 467899999999999999887777776644 5666543110 112235667765
No 138
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=36.87 E-value=17 Score=21.98 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHcHH
Q 040870 128 PLIHQWIEFCLQTA 141 (215)
Q Consensus 128 ~~A~~FInf~lspe 141 (215)
..|+.||+|++...
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 48999999999753
No 139
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=36.85 E-value=20 Score=30.80 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred hhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCC--CceeeeceEEEeCC--CCCcccccCCCCCCChHHHHHHHHH
Q 040870 61 YLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKS--GASLWADLWAIPAA--SRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 61 ~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~e--G~~~~~d~~~I~k~--a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
...+|.+|++|+++.|......+...| ++.++... +...+.+.+++..+ ..|++ ...+|+.-
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~~~~~~~p~------------~v~~~~~a 275 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQATG--ARPVVDLGLDERNAYASVWTVSSGLVRQRPG------------LVQRLVDA 275 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHHTT--EEESSCGGGSGGGCEEEEEEEEHHHHHHCHH------------HHHHHHHH
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHhCC--CEEEEeCcccCCCCceEEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 467899999999999987666555544 55554321 22334445554433 35776 88999886
Q ss_pred HHcH
Q 040870 137 CLQT 140 (215)
Q Consensus 137 ~lsp 140 (215)
+.+.
T Consensus 276 ~~~a 279 (365)
T 2de3_A 276 AVDA 279 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 140
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=36.37 E-value=35 Score=27.15 Aligned_cols=69 Identities=16% Similarity=0.046 Sum_probs=43.9
Q ss_pred cchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec-------CCCceeeeceEEEeCCCCCcccccCCCCCCChHHH
Q 040870 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP-------KSGASLWADLWAIPAASRLETKQIGGRVRGPFPLI 130 (215)
Q Consensus 58 ~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P-------~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A 130 (215)
..+...++.+|++|+++.|..........| +..++. ..|.++-.+.+++.++- +++ ..
T Consensus 126 ~~~~~~al~~G~vDa~~~~~ep~~~~~~~g--~~~~~d~~~~w~~~~g~~~~~~~~~~~~~~-~p~------------~v 190 (272)
T 2czl_A 126 YDRILPMVAQGEVEAGLIIHESRFTYPRYG--LVQVVDLGAWWEERTGLPLPLGAILARRDL-GEG------------LI 190 (272)
T ss_dssp GGGHHHHHHTTSSSEEEECTTHHHHGGGGT--CEEEEEHHHHHHHHHSSCEEEEEEEEEGGG-CHH------------HH
T ss_pred hHHHHHHHHCCCCCEEEEecchhhhhhhcC--CccHHHHHHHHHHhcCCCCCcchhhccccc-CHH------------HH
Confidence 346778899999999999944444344444 333331 01444455666666655 666 88
Q ss_pred HHHHHHHHcHH
Q 040870 131 HQWIEFCLQTA 141 (215)
Q Consensus 131 ~~FInf~lspe 141 (215)
.+|++-+.+..
T Consensus 191 ~~~~~a~~~a~ 201 (272)
T 2czl_A 191 RALDEAVRRSV 201 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998777653
No 141
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=35.65 E-value=21 Score=19.98 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHc
Q 040870 128 PLIHQWIEFCLQ 139 (215)
Q Consensus 128 ~~A~~FInf~ls 139 (215)
.+|++|++|+++
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 489999999985
No 142
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=33.13 E-value=1e+02 Score=23.12 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=36.4
Q ss_pred cCc-cCCCceeeecChhHHHHHHHHccHHHHHHHHHHhccccce--e--ccchhhhhhhcCcEEEEEech
Q 040870 13 WLP-ELAGRISMVNSPREVIGTQAAAGRIAVQQNLALLGNQVRL--F--DRTHYLKVFGIGDVWIAVGWS 77 (215)
Q Consensus 13 ~dp-~~~Gri~~~d~~~~~~~~al~~g~~~a~~~L~~l~~~v~~--~--~~~~~~~~~~~Gev~ia~~w~ 77 (215)
||| ...|++.+--.+ .++..+ +..+...+.+..|+|.. . .+.+..+.+.+|++|+|+...
T Consensus 1 fdp~~~~g~l~Ig~~~--~~~~~~---lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~ 65 (218)
T 2y7p_A 1 MDPFASTRTFNLAMTD--IGEMYF---MPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLL 65 (218)
T ss_dssp CCTTTCCCEEEEECCH--HHHHHH---HHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEECC
T ss_pred CCccccceEEEEEecH--HHHHHH---HHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEecC
Confidence 566 467877665432 222211 12234566677787664 2 224667889999999999753
No 143
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=30.69 E-value=63 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=29.6
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP 95 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P 95 (215)
....+.+.+|++|+++.-......++.++.++.++..
T Consensus 93 ~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 129 (341)
T 3un6_A 93 PDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVAL 129 (341)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEee
Confidence 3567899999999998887777767778888777654
No 144
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=30.25 E-value=56 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=42.7
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCC-CeEEEe-cCCC-ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMS-NVAVVV-PKSG-ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEF 136 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~-~v~~v~-P~eG-~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf 136 (215)
+...++ |++++++.|...+..+..... ..-+.- +++. ...+.+.+++.++..+++ ..++|++-
T Consensus 193 ~~~~al--~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~~~~~n~ivvr~~~~~~~------------~vk~l~~a 258 (295)
T 1p99_A 193 QTARAL--SDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDLDNK------------TYAKIVEL 258 (295)
T ss_dssp GTTGGG--GTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGTTCH------------HHHHHHHH
T ss_pred HHHHHh--hcCCEEEECcHHHHHcCCCcccceEEecCCcccCCCceeEEEEEeCCccChH------------HHHHHHHH
Confidence 444445 689999998755443221111 222333 3321 224666666666656665 89999999
Q ss_pred HHcHHHhCC
Q 040870 137 CLQTARALP 145 (215)
Q Consensus 137 ~lspe~~~~ 145 (215)
+.|++....
T Consensus 259 ~~s~ev~~~ 267 (295)
T 1p99_A 259 YHSKEAQKA 267 (295)
T ss_dssp HHSHHHHHH
T ss_pred HCCHHHHHH
Confidence 999987643
No 145
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=29.26 E-value=82 Score=25.40 Aligned_cols=61 Identities=3% Similarity=-0.166 Sum_probs=38.3
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCc
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLE 115 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~ 115 (215)
+..+.+ .+..+++.+|++++.+..+.......+++.++..+-+ -.....-+++++++++..
T Consensus 200 ~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~--~~~~~~~~ia~~k~~~l~ 261 (292)
T 1pb7_A 200 KHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGE--LFFRSGFGIGMRKDSPWK 261 (292)
T ss_dssp TTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSS--CSEEEEECCEEETTCSSH
T ss_pred hhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCc--cccCCceEEEEeCCCHHH
Confidence 334444 4678999999999998877666655566666654421 112233457888886543
No 146
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=28.42 E-value=48 Score=27.05 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=46.3
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHH
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIH 131 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~ 131 (215)
+..|.+ ++..+++.+|++|++..-...+..+..+|.+++++-- ..+-..+.+.++. -+.+-||---+ ....+
T Consensus 37 ~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~i~~~----~~~g~~~lv~~~~-LkGK~Iav~~~--gs~~~ 109 (283)
T 3hn0_A 37 VKVVDSPDLAQALLIKQETDIAVLPMINAANLYNKGIKIKLAGC----PIWGTLYLVEKTP-LKEPALYVFGN--GTTPD 109 (283)
T ss_dssp EEEESCHHHHHHHHHTTCCSEEEEEHHHHHHHHHTTCSCEEEEE----EECCCCEEEECSS-CCSCCEECSST--TSHHH
T ss_pred EEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHHCCCCeEEEEE----ecccEEEEEecCC-CCCCEEEecCC--CCcHH
Confidence 444544 4667889999999999866655566667777776521 1111222333322 22111222112 23678
Q ss_pred HHHHHHHcHH
Q 040870 132 QWIEFCLQTA 141 (215)
Q Consensus 132 ~FInf~lspe 141 (215)
-++..+|...
T Consensus 110 ~ll~~~L~~~ 119 (283)
T 3hn0_A 110 ILTRYYLGRQ 119 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888888754
No 147
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=26.84 E-value=78 Score=26.21 Aligned_cols=52 Identities=8% Similarity=-0.142 Sum_probs=35.4
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcC----CCeEEEecCCCceeeeceEEEeCCCC
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRM----SNVAVVVPKSGASLWADLWAIPAASR 113 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~----~~v~~v~P~eG~~~~~d~~~I~k~a~ 113 (215)
.....+.+|++++++.+........+.+ ..++++...+ .+--.+++++++.+
T Consensus 159 ~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~--~~p~~~i~~~~~~~ 214 (310)
T 3n5l_A 159 VNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSP--LIPGDPLVWRNNLS 214 (310)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEE--EEECCEEEEETTSC
T ss_pred HHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECC--CCCCCcEEEECCCC
Confidence 4678899999999999988877776665 3566654321 12223577787643
No 148
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=26.79 E-value=1e+02 Score=25.52 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=27.2
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV 94 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~ 94 (215)
+..+.+.+|++|+++.-......+..++.++.++.
T Consensus 59 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~ 93 (348)
T 3uif_A 59 VINEGFASGKIDFGIYGDLPPIILNASKPTVQLVA 93 (348)
T ss_dssp HHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEE
Confidence 35688999999999976666666777787877763
No 149
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=26.68 E-value=88 Score=25.06 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=26.0
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV 94 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~ 94 (215)
.+..+.+.+|++|+++............+.++.++.
T Consensus 43 ~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~ 78 (308)
T 2x26_A 43 PQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG 78 (308)
T ss_dssp HHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEE
Confidence 467789999999999876655544555666766654
No 150
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=26.60 E-value=1e+02 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=30.5
Q ss_pred eecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEec
Q 040870 55 LFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVP 95 (215)
Q Consensus 55 ~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P 95 (215)
.|.+ ....+.+.+|++|+++........+..++.++.++..
T Consensus 64 ~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 105 (324)
T 3ksx_A 64 EFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGW 105 (324)
T ss_dssp EESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEE
T ss_pred ECCCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEE
Confidence 3433 3567899999999998877767777777878777653
No 151
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=26.13 E-value=52 Score=27.24 Aligned_cols=75 Identities=9% Similarity=-0.044 Sum_probs=48.2
Q ss_pred cchhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHHHH
Q 040870 58 RTHYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIEFC 137 (215)
Q Consensus 58 ~~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FInf~ 137 (215)
..+....+..+++++++.++..+..+--....-.+.+-.....-|...+++-++-++.+ ..++|+.-+
T Consensus 160 aaql~r~l~d~~vD~avin~n~a~~agl~p~~dal~~E~~~~~py~Nvivvr~~d~d~~------------~ik~lv~a~ 227 (249)
T 4got_A 160 PELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTKNNPYANIIAVRKGEEDSA------------KIKALMEVL 227 (249)
T ss_dssp TTTHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECCSTTCCCCEEEEEETTCTTSH------------HHHHHHHHH
T ss_pred HhHhhhhcccccccEEEechhHHHHcCCChhhhhhcccCCCCCceEEEEEEcccccCCH------------HHHHHHHHH
Confidence 34556778888999999988766654211001112221112334777788777766655 899999999
Q ss_pred HcHHHhC
Q 040870 138 LQTARAL 144 (215)
Q Consensus 138 lspe~~~ 144 (215)
-|++++.
T Consensus 228 ~s~evk~ 234 (249)
T 4got_A 228 HSKKIKD 234 (249)
T ss_dssp TSHHHHH
T ss_pred CCHHHHH
Confidence 9998864
No 152
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=26.06 E-value=2e+02 Score=22.11 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=36.5
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHH-cCCCeEEEecCCCceeeeceEEEeCCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVK-RMSNVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~-~~~~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
++..+.+ .+..+++.+|++|+.+........... .+.++....+. .....-++++.++.
T Consensus 166 ~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~ 226 (259)
T 4dz1_A 166 KVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVF--KNVDQLGIAFKKGS 226 (259)
T ss_dssp GCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEE--EEEEEEEEEEETTC
T ss_pred eeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeeccc--CCCceEEEEEeCCh
Confidence 3445554 467899999999999998776655443 34555544321 11233467777764
No 153
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=25.33 E-value=36 Score=18.69 Aligned_cols=11 Identities=9% Similarity=0.383 Sum_probs=9.7
Q ss_pred HHHHHHHHHHc
Q 040870 129 LIHQWIEFCLQ 139 (215)
Q Consensus 129 ~A~~FInf~ls 139 (215)
.|++||+|+++
T Consensus 18 ~ak~fl~~l~~ 28 (29)
T 2rrh_A 18 AVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78999999985
No 154
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=24.36 E-value=36 Score=17.94 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=17.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCC
Q 040870 182 FLEPLSEATLSDYEWLVANLQKPA 205 (215)
Q Consensus 182 ~~~~~~~~~~~~~~~~W~~vk~~~ 205 (215)
++.++.++....+..+|..++++.
T Consensus 2 ~~~P~~e~ik~q~~~i~e~i~~a~ 25 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEKVQAAX 25 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhc
Confidence 355666677888999999988753
No 155
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=23.25 E-value=65 Score=25.93 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=28.1
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEE
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVV 93 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v 93 (215)
...+.+.+|+++++++....+..++.++.++..+
T Consensus 46 ~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~ 79 (302)
T 3ix1_A 46 DPIQLTASGAIPLALSYQPDVILARSKDLPVVSV 79 (302)
T ss_dssp HHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEE
Confidence 6778999999999999877777777788777655
No 156
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=22.96 E-value=1.4e+02 Score=22.40 Aligned_cols=53 Identities=11% Similarity=-0.018 Sum_probs=33.9
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcC--CCeEEEecCCCceeeeceEEEeCCC
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~--~~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
.+..+++.+|++++.+.....+....++. .++.++.+...... .-.++++++.
T Consensus 152 ~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~ 206 (246)
T 4eq9_A 152 QQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQP-YVYPLLAQGQ 206 (246)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCC-EECCEEETTC
T ss_pred HHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCC-cEEEEEcCCC
Confidence 46789999999999999887776655443 35766653322111 1345677753
No 157
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=22.93 E-value=2.3e+02 Score=23.34 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=43.8
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCC---ceeeeceEEEeCCCCCcccccCCCCCCChHHHHHHHH
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSG---ASLWADLWAIPAASRLETKQIGGRVRGPFPLIHQWIE 135 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG---~~~~~d~~~I~k~a~~~~~~~~~~~~~~~~~A~~FIn 135 (215)
.+....+ +++++++.|+..+..+-..-..=.+.+-+.- ..-|+..+++-++-++.+ ..++++.
T Consensus 164 aql~r~l--~dvD~avin~n~a~~agl~p~~dal~~E~~~~~~~~~y~Niiavr~~~~d~~------------~~k~lv~ 229 (252)
T 4ib2_A 164 AQVARVT--GETAYVVLNGNYALEAGYSVAKDALAYEKSDSEAAKTYVNIIAVKEGNEKEE------------KIQALVK 229 (252)
T ss_dssp GGGGGGT--TTSSEEEECHHHHHHTTCCHHHHCSEECCTTBHHHHHSEEEEEEETTCTTCH------------HHHHHHH
T ss_pred HHHHhhh--ccCCEEEEchhHHHHcCCCCccceeEecCCCcccCCCeeEEEEEecCccCCH------------HHHHHHH
Confidence 3444445 5799999997766543211001112221111 135778888877766655 8999999
Q ss_pred HHHcHHHhC
Q 040870 136 FCLQTARAL 144 (215)
Q Consensus 136 f~lspe~~~ 144 (215)
-+-|++++.
T Consensus 230 a~~s~evk~ 238 (252)
T 4ib2_A 230 ALKSDEIKE 238 (252)
T ss_dssp HHTSHHHHH
T ss_pred HHCCHHHHH
Confidence 999998764
No 158
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=22.76 E-value=51 Score=25.17 Aligned_cols=57 Identities=14% Similarity=-0.046 Sum_probs=34.4
Q ss_pred ccceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCC
Q 040870 52 QVRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS 112 (215)
Q Consensus 52 ~v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a 112 (215)
++..+.+ .+..+++.+|++++++.+........++++. +++.. .....-+++++++.
T Consensus 175 ~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~k~~ 232 (259)
T 2v25_A 175 KFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDS-FEPQSYGIVTKKDD 232 (259)
T ss_dssp EEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCC-CSEEEECCEEETTC
T ss_pred eEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccc-cccceeEEEEcCCC
Confidence 3444544 4677899999999999987665554444433 33332 22233456777763
No 159
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=22.59 E-value=55 Score=27.28 Aligned_cols=15 Identities=7% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcHHHh
Q 040870 128 PLIHQWIEFCLQTARA 143 (215)
Q Consensus 128 ~~A~~FInf~lspe~~ 143 (215)
+.+.+|++|+++ +.|
T Consensus 271 ~~~~~Fl~~~~s-~gq 285 (321)
T 1ixh_A 271 TEVLKFFDWAYK-TGA 285 (321)
T ss_dssp HHHHHHHHHHHH-HCH
T ss_pred HHHHHHHHHHHh-hhH
Confidence 379999999999 655
No 160
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=22.03 E-value=2.6e+02 Score=21.20 Aligned_cols=58 Identities=12% Similarity=-0.039 Sum_probs=34.8
Q ss_pred cceecc-chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEecCCCceeeeceEEEeCCCC
Q 040870 53 VRLFDR-THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 113 (215)
Q Consensus 53 v~~~~~-~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~P~eG~~~~~d~~~I~k~a~ 113 (215)
+..+.+ .+..+++.+|+ ++.+.....+....++..++.++-+.- ....-+++++++++
T Consensus 168 ~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~a~~k~~~ 226 (259)
T 3g3k_A 168 SVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLI--DSKGYGVGTPMGSP 226 (259)
T ss_dssp HHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSCS--SCEEECCEEETTCT
T ss_pred CcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEecccc--eeeeEEEEECCCCc
Confidence 344544 46788999999 766665444444445566677663321 12334678888754
No 161
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=21.29 E-value=68 Score=26.11 Aligned_cols=36 Identities=17% Similarity=0.007 Sum_probs=28.1
Q ss_pred chhhhhhhcCcEEEEEechhcHHHHHHcCCCeEEEe
Q 040870 59 THYLKVFGIGDVWIAVGWSSDVLPAVKRMSNVAVVV 94 (215)
Q Consensus 59 ~~~~~~~~~Gev~ia~~w~~~~~~~~~~~~~v~~v~ 94 (215)
.+...+|.+|++|+++.|......+..++..+..++
T Consensus 133 ~~~~~al~~G~vDa~~~~eP~~~~a~~~~~~~~~~~ 168 (283)
T 3hn0_A 133 GEITQGILAGKVNRAVLGEPFLSIALRKDSSLRITA 168 (283)
T ss_dssp HHHHHHHHHTSCSEEEECTTHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHcCCCCEEEecccHHHHHHhhCCCeEEEe
Confidence 567789999999999999887777766665565554
No 162
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.78 E-value=1.6e+02 Score=24.45 Aligned_cols=52 Identities=8% Similarity=-0.077 Sum_probs=34.9
Q ss_pred hhhhhhhcCcEEEEEechhcHHHHHHcC----CCeEEEecCCCceeeeceEEEeCCCC
Q 040870 60 HYLKVFGIGDVWIAVGWSSDVLPAVKRM----SNVAVVVPKSGASLWADLWAIPAASR 113 (215)
Q Consensus 60 ~~~~~~~~Gev~ia~~w~~~~~~~~~~~----~~v~~v~P~eG~~~~~d~~~I~k~a~ 113 (215)
.....+.+|++++++.+........+.+ ..++++...+..+ ...++++++.+
T Consensus 168 ~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p--~~~i~~~k~~~ 223 (321)
T 3p7i_A 168 TNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIP--GDPIVWRKNLS 223 (321)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBC--CCEEEEETTSC
T ss_pred HHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCC--CCceeeeCCCC
Confidence 5678899999999999887776666543 3577765332222 23577777643
Done!