BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040874
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 18 FNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRG--K 75
+ K+K + DLV +++ I++++++PI + + + H +
Sbjct: 67 YAKLKLTQNTGSGYDLVFPSSYYVNKMIKEKMLQPIDQSKLTNIHQIPKHLLNKEFDPEN 126
Query: 76 IWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYM 135
++ PY +G I + D I W DLW+PE G++ M + REV L
Sbjct: 127 KYSLPYVYGLTGIEVNADEI---DPKTITSWADLWKPEFKGKVLMTSDAREVFHVALLLD 183
Query: 136 GASYNSNN 143
G S N+ N
Sbjct: 184 GKSPNTTN 191
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 77 WAAPYRWGAMMIAYKKSKFRK--HDLAPIEDWKDLWRPELAGR-----ISMVNSPREVIG 129
+A PY W I Y K + + AP++ W + +PE + +S +++P EV
Sbjct: 129 FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFA 188
Query: 130 SVLKYMGASYNSNNID 145
+VL Y+G NS D
Sbjct: 189 TVLNYLGKDPNSTKAD 204
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 52 PIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWR 111
P+ D DW K G ++ P GA IA+ + ++ W DLW+
Sbjct: 117 PVLKELDPDWLNKPYDK-----GNKYSLPQLLGAPGIAFNTNTYKGEQFT---SWADLWK 168
Query: 112 PELAGRISMVNSPREVIGSVLKYMGASYNSNN 143
PE A ++ +++ REV L +G N+ +
Sbjct: 169 PEFANKVQLLDDAREVFNIALLKIGQDPNTQD 200
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 77 WAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMG 136
++ PY WGA I D + W DLW+PE G + + + REV L+ +G
Sbjct: 125 YSIPYIWGATAIGVNGDAV---DPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLG 181
Query: 137 ASYNSNN 143
S N+ +
Sbjct: 182 YSGNTTD 188
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 77 WAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMG 136
++ PY WGA I D + W DLW+PE G + + + REV L+ +G
Sbjct: 125 YSIPYIWGATAIGVNGDAV---DPKSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLG 181
Query: 137 ASYNSNN 143
S N+ +
Sbjct: 182 YSGNTTD 188
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 77 WAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMG 136
++ PY WGA I D I W DLW+PE + + + REV L+ +G
Sbjct: 125 YSVPYIWGATAIGVNSDAI---DPKTITSWADLWKPEYKNSLLLTDDAREVFQMALRKLG 181
Query: 137 ASYNSNN 143
S N+ +
Sbjct: 182 YSGNTTD 188
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 77 WAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMG 136
++ PY WGA I D I W DLW+PE + + + REV L+ +G
Sbjct: 125 YSVPYIWGATAIGVNSDAI---DPKTITSWADLWKPEYKNSLLLTDDAREVFQMALRKLG 181
Query: 137 ASYNSNN 143
S N+ +
Sbjct: 182 YSGNTTD 188
>sp|Q9KU25|NSPS_VIBCH Norspermidine sensor OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=nspS PE=3 SV=1
Length = 359
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 78 AAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDL--WRPELAGRISMVNSPREVIGSVLKYM 135
A PY WG++ IAY+KS F K P W ++ P GR+ M+ E + L +
Sbjct: 127 AVPYFWGSVGIAYRKSLFDK----PPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYML 182
Query: 136 GASYNSNNIDS 146
AS +++ID+
Sbjct: 183 NASPITDSIDT 193
>sp|P76108|YDCS_ECOLI Putative ABC transporter periplasmic-binding protein YdcS
OS=Escherichia coli (strain K12) GN=ydcS PE=3 SV=1
Length = 381
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 32 DLVSV-GDPWLSFAIEKRLIEPIAGGEDQDW----FKCLSHKWKRTRGKIWAAPYRWGAM 86
DLV+ GD L + KR ++PI +W + + W GK++ PY+WG
Sbjct: 89 DLVTASGDASLRLIMGKR-VQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPN 147
Query: 87 MIAYKKSKFRKHDLAPIEDWK 107
++ Y F P + W+
Sbjct: 148 LLMYNTKTFP----TPPDSWQ 164
>sp|O58758|Y1039_PYRHO Uncharacterized ABC transporter extracellular-binding protein
PH1039 OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1039
PE=3 SV=1
Length = 420
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 74 GKIWAAPYRWGAMM-IAYKKSKFRKHDLAPIEDWKDL 109
GKI+ AP+ A Y+KS F KH+L P + W D
Sbjct: 147 GKIYGAPFTAAAKPGFWYRKSFFEKHNLKPPKTWDDF 183
>sp|Q6IVY4|SSH_XENLA Protein phosphatase Slingshot homolog OS=Xenopus laevis GN=ssh PE=1
SV=2
Length = 691
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 92 KSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID 145
+S +H L ++D+K+ E+ ++ ++ P E+ + Y+G+ +N++N++
Sbjct: 264 RSALEQHTLCALQDYKEFIDNEMIIILAQMDRPSEIFPYL--YLGSEWNASNLE 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,848,360
Number of Sequences: 539616
Number of extensions: 2372095
Number of successful extensions: 4521
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4514
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)