Query 040874
Match_columns 165
No_of_seqs 179 out of 1240
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0687 PotD Spermidine/putres 99.9 1.7E-27 3.7E-32 194.9 11.3 149 6-160 59-219 (363)
2 PRK09501 potD spermidine/putre 99.9 1.7E-25 3.7E-30 181.8 11.7 148 10-163 58-210 (348)
3 PRK10682 putrescine transporte 99.9 8.9E-23 1.9E-27 167.2 12.0 149 10-162 61-224 (370)
4 TIGR03227 PhnS 2-aminoethylpho 99.8 1.5E-18 3.3E-23 142.2 8.7 108 7-125 69-176 (367)
5 TIGR01276 thiB thiamine ABC tr 99.7 7E-17 1.5E-21 129.2 10.2 105 11-127 39-144 (309)
6 TIGR03261 phnS2 putative 2-ami 99.7 4.2E-17 9.1E-22 131.9 8.9 111 9-124 53-164 (334)
7 PF13343 SBP_bac_6: Bacterial 99.7 1.4E-16 3.1E-21 123.1 5.5 88 29-124 2-93 (242)
8 PRK15046 2-aminoethylphosphona 99.6 4.4E-16 9.6E-21 126.7 7.6 106 7-123 64-169 (349)
9 PRK11205 tbpA thiamine transpo 99.6 2E-15 4.4E-20 121.9 10.0 101 12-124 61-162 (330)
10 TIGR01254 sfuA ABC transporter 99.6 3.1E-15 6.8E-20 119.4 10.3 108 12-131 40-148 (304)
11 PRK11622 hypothetical protein; 99.6 2.6E-15 5.7E-20 124.5 9.1 106 12-123 77-194 (401)
12 PF13416 SBP_bac_8: Bacterial 99.5 3.8E-14 8.1E-19 111.0 5.3 146 6-157 13-168 (281)
13 COG2182 MalE Maltose-binding p 99.2 8.6E-12 1.9E-16 103.5 5.0 101 4-110 68-171 (420)
14 TIGR03850 bind_CPR_0540 carboh 99.2 2.5E-11 5.3E-16 101.1 6.9 109 4-112 61-187 (437)
15 TIGR03851 chitin_NgcE carbohyd 99.2 1.6E-11 3.6E-16 102.8 5.8 109 3-111 66-188 (450)
16 COG1840 AfuA ABC-type Fe3+ tra 99.2 6.9E-11 1.5E-15 94.5 8.5 109 10-124 16-125 (299)
17 PRK09474 malE maltose ABC tran 99.2 3.8E-11 8.3E-16 98.8 6.3 91 15-111 67-160 (396)
18 COG4143 TbpA ABC-type thiamine 99.2 1.5E-10 3.2E-15 92.2 8.2 112 10-132 62-174 (336)
19 PRK10974 glycerol-3-phosphate 99.0 3.9E-10 8.4E-15 94.3 6.0 99 13-111 65-175 (438)
20 COG1653 UgpB ABC-type sugar tr 98.9 3E-09 6.5E-14 87.3 6.0 105 6-110 63-173 (433)
21 PF02030 Lipoprotein_8: Hypoth 98.8 8.4E-09 1.8E-13 86.4 7.1 123 7-135 52-206 (493)
22 PF01547 SBP_bac_1: Bacterial 98.6 2.3E-08 5.1E-13 78.5 2.7 98 12-112 32-141 (315)
23 TIGR00971 3a0106s03 sulfate/th 98.4 1.1E-06 2.4E-11 71.0 7.6 91 7-126 46-137 (315)
24 TIGR01256 modA molybdenum ABC 98.2 9.7E-06 2.1E-10 61.4 8.1 83 6-123 22-106 (216)
25 PRK10752 sulfate transporter s 98.2 5.6E-06 1.2E-10 67.3 7.0 92 4-123 54-146 (329)
26 PRK10852 thiosulfate transport 98.2 6.4E-06 1.4E-10 67.2 7.3 91 6-123 61-152 (338)
27 PF13531 SBP_bac_11: Bacterial 98.1 1.8E-05 4E-10 60.4 8.7 85 5-123 26-111 (230)
28 COG4134 ABC-type uncharacteriz 97.9 1.1E-05 2.3E-10 65.1 3.6 101 19-124 82-188 (384)
29 PRK10677 modA molybdate transp 97.3 0.0026 5.7E-08 49.9 9.0 89 5-123 54-144 (257)
30 COG1613 Sbp ABC-type sulfate t 93.4 0.31 6.8E-06 39.3 6.4 69 30-122 92-162 (348)
31 COG0725 ModA ABC-type molybdat 93.2 0.62 1.3E-05 36.7 7.8 86 5-123 57-143 (258)
32 TIGR03730 tungstate_WtpA tungs 89.9 2.2 4.8E-05 33.9 7.8 86 5-123 29-118 (273)
33 PRK04168 molybdate ABC transpo 89.7 1.8 3.8E-05 35.4 7.3 86 6-123 61-149 (334)
34 PRK03537 molybdate ABC transpo 77.5 3.3 7.2E-05 30.7 3.6 38 79-123 17-55 (188)
35 COG4150 CysP ABC-type sulfate 69.8 2.6 5.6E-05 33.3 1.3 69 31-122 87-156 (341)
36 KOG2951 Inositol monophosphata 43.1 15 0.00033 29.2 1.6 90 30-122 41-144 (279)
37 PF13379 NMT1_2: NMT1-like fam 31.4 2.3E+02 0.0051 21.5 8.7 102 10-139 41-148 (252)
38 PF12727 PBP_like: PBP superfa 30.3 1.7E+02 0.0036 21.8 5.4 57 76-139 61-120 (193)
39 PF14306 PUA_2: PUA-like domai 25.0 55 0.0012 23.9 1.9 73 18-97 19-92 (160)
No 1
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=194.93 Aligned_cols=149 Identities=26% Similarity=0.459 Sum_probs=132.5
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc----cCCCceEeeee
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK----RTRGKIWAAPY 81 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~----~~~g~~y~vP~ 81 (165)
-++++|+|++++.+|++++..+ |||++++..++.+++++|+|+|||.+++ +|++++.+.+. .++|+.|+|||
T Consensus 59 V~~~~~~sne~~~ak~~~g~~~---~Dvv~~s~~~~~~~~~~gll~~lD~skl-~n~~~l~~~~~~~~~~d~g~~y~vPy 134 (363)
T COG0687 59 VVYDTFDSNEEMLAKLKAGGGG---YDVVVPSGYFVARLIKEGLLQPLDKSKL-PNWKNLDPEFLNPPKFDPGNKYSVPY 134 (363)
T ss_pred EEEEecCCcHHHHHHHHcCCCC---ceEEEeCHHHHHHHHHcCCcccCChhhC-cCccccCHHHhccccCCCCCEeeeeE
Confidence 3567889999999999999874 9999999999999999999999999997 88888888764 35788999999
Q ss_pred eecceEEEEechhcccCCCCCCCCHHHhcCcc----cCCc-eeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hh
Q 040874 82 RWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPE----LAGR-ISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VA 154 (165)
Q Consensus 82 ~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~----~kgk-i~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~ 154 (165)
.||+++|+||+++++. .++|+||++||+++ +||+ +.+.|+++.++.+++.++|.++|..+++ +.+|.++ .+
T Consensus 135 ~~g~t~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~ 212 (363)
T COG0687 135 FWGTTGIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPEDLKKAFDLLDK 212 (363)
T ss_pred EeeeeEEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999982 13789999999997 7998 8999999999999999999999888886 8899888 89
Q ss_pred hhh-hHH
Q 040874 155 VQQ-NLA 160 (165)
Q Consensus 155 lk~-~v~ 160 (165)
+|| ++.
T Consensus 213 ~kp~~~~ 219 (363)
T COG0687 213 LKPVNVY 219 (363)
T ss_pred hCcccEE
Confidence 999 443
No 2
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=99.93 E-value=1.7e-25 Score=181.83 Aligned_cols=148 Identities=22% Similarity=0.379 Sum_probs=126.8
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc---CCCceEeeeeeecce
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR---TRGKIWAAPYRWGAM 86 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~---~~g~~y~vP~~~~~~ 86 (165)
++++++++++||+++.. ..+||+++++.++.+++++|+|+||+.+.+ ++++++.+.++. ++++.|++||.++++
T Consensus 58 ~~~s~~~~~~kl~a~~~--~~~Dvv~~~~~~~~~~~~~gll~~ld~~~~-~~~~~i~~~~~~~~~~~~~~y~vP~~~~~~ 134 (348)
T PRK09501 58 TYESNETMYAKLKTYKD--GAYDLVVPSTYYVDKMRKEGMIQKIDKSKL-TNFSNLDPDMLNKPFDPNNDYSIPYIWGAT 134 (348)
T ss_pred ecCCHHHHHHHHhcCCC--CCceEEEeCHHHHHHHHHCCCcccCChhhC-cChhhCCHHHhcCCCCCCCceEeeeeccce
Confidence 56778899999998653 279999999888999999999999998764 688888887642 456679999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhhhhhHHhhh
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAVQQNLALLQ 163 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~lk~~v~~~~ 163 (165)
+|+||++++++ ++|+||+|||+|+|+|||++.+.+...+.+++...|.+.+..+++ ++.+... .+|++|++.|.
T Consensus 135 ~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~ 210 (348)
T PRK09501 135 AIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFN 210 (348)
T ss_pred EEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEc
Confidence 99999999975 378999999999999999999988888988999999988888875 7777766 88999987663
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.89 E-value=8.9e-23 Score=167.15 Aligned_cols=149 Identities=23% Similarity=0.425 Sum_probs=122.4
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc-----cCCCceEeeeeeec
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK-----RTRGKIWAAPYRWG 84 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~-----~~~g~~y~vP~~~~ 84 (165)
.+++++++.+||+++. +.|||+++++.++.+++++|+|+|||.+.+ ++++++.+.++ .++|+.|++||.++
T Consensus 61 ~~~~~~~~~~kl~a~~---~~~Dvv~~~~~~~~~~~~~gll~~ld~~~~-~~~~~~~~~~~~~~~~~~~g~~y~vP~~~~ 136 (370)
T PRK10682 61 VFDSNEVLEGKLMAGS---TGFDLVVPSASFLERQLTAGVFQPLDKSKL-PNWKNLDPELLKLVAKHDPDNKYAMPYMWA 136 (370)
T ss_pred ecCCHHHHHHHHHcCC---CCCcEEEECHHHHHHHHHCCCcccCChhhC-cChhhCCHHHHhccccCCCCCeEeeeeEec
Confidence 5677788999998854 369999999999999999999999998775 67888877764 24577899999999
Q ss_pred ceEEEEechhcccC-CCC-CCCCHHHhcCcccCCc-----eeeecChHHHHHHHHHHhCCCCCCCChH-H-Hhcchh-hh
Q 040874 85 AMMIAYKKSKFRKH-DLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNID-S-QVAGGK-VA 154 (165)
Q Consensus 85 ~~~i~YN~~~v~~~-g~~-~p~sw~dL~d~~~kgk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~-~-~~a~~~-~~ 154 (165)
+++|+||++++++. |.+ +|+||++||+|+++++ +++.+.+..++..++.+.|.++++.++. + +.+... .+
T Consensus 137 ~~~l~YN~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~a~~~l~~ 216 (370)
T PRK10682 137 TTGIGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLK 216 (370)
T ss_pred ceEEEEehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999763 543 6799999999976654 7888888888999999999999887775 5 366655 78
Q ss_pred hhhhHHhh
Q 040874 155 VQQNLALL 162 (165)
Q Consensus 155 lk~~v~~~ 162 (165)
+|+|++.|
T Consensus 217 l~~~v~~~ 224 (370)
T PRK10682 217 LRPNIRYF 224 (370)
T ss_pred hchhhEEE
Confidence 89987655
No 4
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.76 E-value=1.5e-18 Score=142.21 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=85.0
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecce
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAM 86 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~ 86 (165)
|.-+..+.++++.|++++.. ++.+||++.++.++.++.++|+|+|++.+.. +++.+.++. .+. +..|+.++..
T Consensus 69 V~~~~~~s~~~~~rl~~e~~-~~~~DVv~~~~~~~~~~~~~Gll~~~~~~~~----~~~~~~~~~-~~g-~~~p~~~~~~ 141 (367)
T TIGR03227 69 VNIVEAGGGEVVERAAKEKG-NPKADVIVTAPPFIQQAAAEGLLANFNSDAA----KAIPAIAKA-ADG-LWAPFVKNYF 141 (367)
T ss_pred EEEEeCChHHHHHHHHhhcc-CCCCCEEEeCcHHHHHHHHCCCccCCCCccc----ccCchhhcC-CCC-eEEEEeecee
Confidence 33344567889999998764 3589999998888889999999999997543 344443442 233 4459999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChH
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPR 125 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~ 125 (165)
+|+||++++++ +|+||+|||+|+|+|||++.+...
T Consensus 142 ~i~YN~d~~~~----~P~sw~DL~~p~~~Gki~~~~p~~ 176 (367)
T TIGR03227 142 SFAINPKLLKS----APASFADLLDADFKGKLAYSNPAQ 176 (367)
T ss_pred EEEEchhhcCC----CCCCHHHHhChhccCCEeecCCCc
Confidence 99999999986 799999999999999999987543
No 5
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.71 E-value=7e-17 Score=129.19 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=84.1
Q ss_pred cCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEE
Q 040874 11 FNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIA 89 (165)
Q Consensus 11 ~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~ 89 (165)
++|++++++||+++..+ +.+||++..+ ..+.++.++|+|+|++.+. +..++...+. +.|++|+.++.++|+
T Consensus 39 ~~s~~~l~~kl~~e~~~-~~~DVv~~~~~~~~~~~~~~gll~p~~~~~---~~~~~~~~~~----~~~~~p~~~~~~~i~ 110 (309)
T TIGR01276 39 LEDGVSLLNRLRLEGKN-SKADVVLGLDNNLLDAASKTGLFAKSGVAA---DAVNVPGGWN----NDTFVPFDYGYFAFV 110 (309)
T ss_pred cCcHHHHHHHHHHcCCC-CCCCEEEecCcHHHHHHHHCCCcccCCCCh---hhccCCcccc----CCeEEEEeeEEEEEE
Confidence 56789999999998753 5899999854 5688999999999997532 3344444332 248999999999999
Q ss_pred EechhcccCCCCCCCCHHHhcCcccCCceeeecChHHH
Q 040874 90 YKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREV 127 (165)
Q Consensus 90 YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~ 127 (165)
||++.++. +|+||+||++++++|||++.+.....
T Consensus 111 yn~~~~~~----~P~sw~DL~~~~~~g~i~~~~p~~s~ 144 (309)
T TIGR01276 111 YDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTST 144 (309)
T ss_pred ECccccCC----CCCCHHHHhccccCCeEEeeCCCCCc
Confidence 99999975 79999999999999999998854333
No 6
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.70 E-value=4.2e-17 Score=131.91 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=87.2
Q ss_pred cccCCCchHHHHHHhhcCCCCCccEEEeC-hHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceE
Q 040874 9 GIFNNLSLPFNKVKAKSASYMAADLVSVG-DPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMM 87 (165)
Q Consensus 9 ~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~-~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~ 87 (165)
-++.+++++.+|++++..+ +.+||++.. ...+..+.++|+|+|++... ++++.+.++..++..|++++..+..+
T Consensus 53 ~~~~~s~~~~~kl~ae~~~-~~~Dvv~~~~~~~~~~~~~~gll~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (334)
T TIGR03261 53 WVRDSTGIITAKLLAEKNN-PQADVVWGLAASSLALLDKEGMLKPYKPKG----LDALNPKFRDAKNPPHWVGMDAWMAA 127 (334)
T ss_pred EEECChHHHHHHHHHHhhC-CCCCEEEecCchHHHhhhhccccccCCCcC----hhhcCHhhhCCCCCCceEeeeeeEEE
Confidence 3456778999999887643 579999875 34667789999999999643 45666767643333466777777889
Q ss_pred EEEechhcccCCCCCCCCHHHhcCcccCCceeeecCh
Q 040874 88 IAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 88 i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~ 124 (165)
|+||++++++.|.++|+||+||++|+|+|||++.|..
T Consensus 128 ~~yN~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~ 164 (334)
T TIGR03261 128 ICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPA 164 (334)
T ss_pred EEEehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCc
Confidence 9999999987666679999999999999999998743
No 7
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.65 E-value=1.4e-16 Score=123.15 Aligned_cols=88 Identities=24% Similarity=0.520 Sum_probs=68.5
Q ss_pred CCccEEE-eChHHHHHHHHcCcccccCCCCCcchhcccc---cccccCCCceEeeeeeecceEEEEechhcccCCCCCCC
Q 040874 29 MAADLVS-VGDPWLSFAIEKRLIEPIAGGEDQDWFKCLS---HKWKRTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIE 104 (165)
Q Consensus 29 ~~~Dv~~-~~~~~~~~~~~~gll~pld~~~~~~~~~~i~---~~~~~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~ 104 (165)
+.+||++ .+...+.+++++|+++|++.. +++++. ..++..+| |.+|+.++..+|+||++.+++. +.|+
T Consensus 2 p~aDv~~~~~~~~~~~~~~~gll~p~~~~----~~~~~~~~~~~~~d~~g--~~~~~~~~~~~i~yN~~~~~~~--~~P~ 73 (242)
T PF13343_consen 2 PQADVIVSLDPDFMERAKEAGLLQPYDPS----NIDNVPNEFESFKDPDG--YWVPYGYGPVVIAYNTDKLKER--DLPT 73 (242)
T ss_dssp -S-SEEEEESHHHHHHHHHTTGBE---HH----HHHHHSHCSGGGBHTTS--SSEEEEEEEEEEEEETTTSSSG--GTTS
T ss_pred CceeEEEECCHHHHHHHHHCcCeeeCCcc----chhhCcchHHhccCCCC--eEEEEEEEEEEEEEEhhhcCCC--CCCc
Confidence 5799999 888899999999999999954 344454 66664434 6669999999999999999862 1289
Q ss_pred CHHHhcCcccCCceeeecCh
Q 040874 105 DWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 105 sw~dL~d~~~kgki~~~d~~ 124 (165)
||+||++|+|+|+|++.+..
T Consensus 74 sw~dL~~p~~~g~i~~~~~~ 93 (242)
T PF13343_consen 74 SWADLLDPKYKGKIALPDPN 93 (242)
T ss_dssp SGGGGGSGGGTTTEEEETTT
T ss_pred cHHHHHHHHhCCCEEECCcc
Confidence 99999999999999999955
No 8
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.64 E-value=4.4e-16 Score=126.75 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=84.8
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecce
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAM 86 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~ 86 (165)
|.-...+.++++.|++++.. ++.+||++....++.+++++|+|+|++.. +.+++.+.++..+| +.+|+.++..
T Consensus 64 V~~~~~~s~~~~~kl~~~~~-~~~~DVv~~~~~~~~~~~~~Gll~~~~~~----~~~~i~~~~~d~~g--~~~~~~~~~~ 136 (349)
T PRK15046 64 VNYVEAGSGEVVNRAAKEKS-NPQADVLVTLPPFIQQAAAEGLLQPYSSV----NAKAVPAIAKDADG--TYAPFVNNYL 136 (349)
T ss_pred EEEEeCChHHHHHHHHhhhc-CCCCCEEEeCcHHHHHHHhCCCccccCcc----chhcCchhhcCCCC--CEEeeeccee
Confidence 44445667889999987754 35799999988888899999999999853 34556555553344 3479999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
+|+||++++++ +|+||+||++++|+|||++.+.
T Consensus 137 ~l~Yn~~~~~~----~P~sw~dL~~~~~~gki~~~~p 169 (349)
T PRK15046 137 SFIYNPKVLKT----APATWADLLDPKFKGKLQYSTP 169 (349)
T ss_pred EEEEchhhccC----CCCCHHHHhCHHhCCCEEecCC
Confidence 99999999986 7999999999999999999764
No 9
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.63 E-value=2e-15 Score=121.88 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=79.9
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~Y 90 (165)
++.+++++|++++..+ +.+||++..+ ..+.++.++|+|+|++.+. ...++.+.+. + .|++|+.++.++|+|
T Consensus 61 ~s~~~~~~kl~~e~~~-~~~DV~~~~~~~~~~~l~~~gll~~~~~~~---~~~~~~~~~~--~--~~~~~~~~~~~~l~y 132 (330)
T PRK11205 61 EDGVSLLNRLRLEGKN-SKADVVLGLDNNLLAAAKQTGLFAPSGVDT---SAVTVPGGWN--D--DTFVPYDYGYFAFVY 132 (330)
T ss_pred CcHHHHHHHHHhcCCC-CCCCEEEECCchHHHHHHHCCCcccccCCh---hhccCccccc--C--CceeeEeeeeEEEEE
Confidence 3445899999987643 5799999755 5788899999999997532 2234444443 1 378999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCcccCCceeeecCh
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~ 124 (165)
|++++++ +|+||+||++++|+|||++.+..
T Consensus 133 n~~~~~~----~P~sw~DL~~~~~~g~i~~~dp~ 162 (330)
T PRK11205 133 DKEKLKN----PPKSLKELVESDQNWKVIYQDPR 162 (330)
T ss_pred cccccCC----CCCCHHHHhChhhcCCEEecCCC
Confidence 9999986 79999999999999999998743
No 10
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.62 E-value=3.1e-15 Score=119.45 Aligned_cols=108 Identities=18% Similarity=0.224 Sum_probs=82.1
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~Y 90 (165)
++++++++|++++..+ +.+||++. +..++.++.++|+|+|++.. .+++...+. .. ..|++|+.++..+|+|
T Consensus 40 ~~~~~~~~~l~~~~~~-~~~Dv~~~~~~~~~~~~~~~gll~~~~~~-----~~~~~~~~~-~~-~~~~~p~~~~~~~i~y 111 (304)
T TIGR01254 40 EDAGELLNRLRLEGKN-PKADVVLGLDNNLLEAASKTGLLAPSGVA-----LDKVNVPGG-WN-NATFLPFDYGYVAFVY 111 (304)
T ss_pred CCHHHHHHHHHhcCCC-CCCCEEEEeCHHHHHHHHHcCCcccCCcc-----ccccccccc-cC-CCeEEEEeeeeEEEEE
Confidence 3468999999986642 46999996 66688999999999999742 222322222 12 2388999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHH
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSV 131 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~a 131 (165)
|++++++ +|+||+||++++|+|||++.+.....++.+
T Consensus 112 n~~~~~~----~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~ 148 (304)
T TIGR01254 112 DKNKLQN----PPQSLKELVEPEQDLLVIYQDPRTSSPGLG 148 (304)
T ss_pred chHHhcC----CCCCHHHHhCHHhcCcEEecCCCCChhHHH
Confidence 9999986 799999999999999999987444433333
No 11
>PRK11622 hypothetical protein; Provisional
Probab=99.61 E-value=2.6e-15 Score=124.51 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCCchHHHHHHhhcCCC----CCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccc------ccccCCCceEeeee
Q 040874 12 NNLSLPFNKVKAKSASY----MAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSH------KWKRTRGKIWAAPY 81 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~----~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~------~~~~~~g~~y~vP~ 81 (165)
++.++.++||+++..++ +.+||++.+...+.++.++|+|++...+++ |+++.+.+ .|. .+++.|++||
T Consensus 77 ~~~~~~~~kl~ae~~aG~~~~~~~Dvv~~~~~~~~~~~~~gll~~~~~~~l-p~~~~~~~~~~~~~~~~-~~~~~y~~P~ 154 (401)
T PRK11622 77 ADIAEAVNRLLAEKQAGRDTGGSVDLVWINGENFRTLKEAGLLYGPFAETL-PNWRYVDTSLPVREDFG-VPTEGLEAPW 154 (401)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCCeEEEECchhHHHHHHCCCccCchhhhC-cCchhcccchhhhhhcc-ccCCceEeec
Confidence 36788999999865332 579999998777889999999975433554 56554432 122 2334599999
Q ss_pred eecceEEEEechhcccCCCCCCCCHHHhcC--cccCCceeeecC
Q 040874 82 RWGAMMIAYKKSKFRKHDLAPIEDWKDLWR--PELAGRISMVNS 123 (165)
Q Consensus 82 ~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d--~~~kgki~~~d~ 123 (165)
.++..+|+||++++++ +|+||+||++ ++++||+++.+.
T Consensus 155 ~~~~~~l~YN~d~~~~----~P~Sw~dL~~~~~~~~Gk~~~~~p 194 (401)
T PRK11622 155 GGAQLVFIYDSARTPQ----PPQSPAELLEWAKANPGRFTYPRP 194 (401)
T ss_pred cCCeEEEEEchHhcCC----CCCCHHHHHHHHHHCCCcEecCCC
Confidence 9999999999999986 8999999988 799999999764
No 12
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.48 E-value=3.8e-14 Score=110.96 Aligned_cols=146 Identities=17% Similarity=0.261 Sum_probs=103.3
Q ss_pred ccccccCCCchHHHHHHhhcCCCC--CccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc--cCCCceEeeee
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYM--AADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK--RTRGKIWAAPY 81 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~--~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~--~~~g~~y~vP~ 81 (165)
.|.-+..+.+++.+||.+...++. .+||++....++..+++.|+|+||+.. ++++++.+.+. ..+|+.|++|+
T Consensus 13 ~V~~~~~~~~~~~~~l~~~~~~g~~Pd~dv~~~~~~~~~~~~~~g~l~~L~~~---~~~~~~~~~~~~~~~~G~~y~~P~ 89 (281)
T PF13416_consen 13 KVEIQTFPSDDYQQKLQSALASGNAPDIDVVWPDSSWIPQLAEQGLLEDLDDL---ENYDDIPDALEAFTYDGKLYGVPF 89 (281)
T ss_dssp EEEEEEESHHHHHHHHHHHHHTTSSSSESEEEEEHHHHHHHHHTTHBEHHTGH---GGGGGBHHHHHHTEETTEESEEEE
T ss_pred EEEEEeCCcHHHHHHHHhhhcCCCccceEEEEECHHHHHHHHHCCCccccchh---hhhccchHHHHhcCCCCeEEEEEE
Confidence 344444566888888888543222 356777788899999999999999842 34555533221 25788999999
Q ss_pred eecc-eEEEEechhcccCCCCCCCCHHHhcC--cccCCceeeecChHHHHHHHHHHhCCCCCCC--ChHHHhcchh-hhh
Q 040874 82 RWGA-MMIAYKKSKFRKHDLAPIEDWKDLWR--PELAGRISMVNSPREVIGSVLKYMGASYNSN--NIDSQVAGGK-VAV 155 (165)
Q Consensus 82 ~~~~-~~i~YN~~~v~~~g~~~p~sw~dL~d--~~~kgki~~~d~~~~~~~~al~~~G~~~~~~--~~~~~~a~~~-~~l 155 (165)
.+++ .+++||+++++++ .|+||++|++ ++++|++++.+........++.+.|..+... .+++.++... .++
T Consensus 90 ~~~~~~~~~yn~d~~~~~---~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 166 (281)
T PF13416_consen 90 DYGTPYGLYYNKDLLKKA---PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDDDGTSENFVEALEFLKEL 166 (281)
T ss_dssp EEEEEEEEEEETTTHSHS---GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTEETTSHHHHHHHHHHHHH
T ss_pred eeccceEEEEchhhcccC---CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhcccCCHHHHHHHHHHHHH
Confidence 9997 7999999999973 8999999998 7999999998866655555555666666443 3445444433 444
Q ss_pred hh
Q 040874 156 QQ 157 (165)
Q Consensus 156 k~ 157 (165)
++
T Consensus 167 ~~ 168 (281)
T PF13416_consen 167 YD 168 (281)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=99.23 E-value=8.6e-12 Score=103.52 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=80.6
Q ss_pred ccccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccc-c--cCCCceEeee
Q 040874 4 CASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKW-K--RTRGKIWAAP 80 (165)
Q Consensus 4 ~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~-~--~~~g~~y~vP 80 (165)
++.|.-.+....+...+++.....+..+||++....++..+.++|+|.||+...- -..++.+.. . ..+|++||+|
T Consensus 68 gi~V~i~~~~~~d~~~~~~~~~paGqgpDi~~~~hD~iG~~a~~G~l~~i~~~~~--~~~~~~~~~~~a~~y~GkiYGlP 145 (420)
T COG2182 68 GIKVKIVEEDYDDLLEKFLLAAPAGQGPDIFVWAHDRIGGLAEAGLLLEIDPYAT--KYTDFYPAALVAATYKGKLYGLP 145 (420)
T ss_pred CCeEEEEecCcccHHHHhhcccCCCCCCCEEEecchhHHHHHhCCcccccCcchh--hhhccchhhhhhhhcCCEEEecc
Confidence 4555556666678888888776556789999999999999999999999987641 111222221 1 2689999999
Q ss_pred eeecceEEEEechhcccCCCCCCCCHHHhc
Q 040874 81 YRWGAMMIAYKKSKFRKHDLAPIEDWKDLW 110 (165)
Q Consensus 81 ~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~ 110 (165)
....+..|+||+++|++ +|+||+||.
T Consensus 146 ~~~Et~~L~YNKdlv~~----~P~T~~el~ 171 (420)
T COG2182 146 QAVETLALYYNKDLVPE----PPKTWEELE 171 (420)
T ss_pred HhhhhhhhheeccccCC----CcccHHHHH
Confidence 99999999999999998 899999996
No 14
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=99.22 E-value=2.5e-11 Score=101.10 Aligned_cols=109 Identities=11% Similarity=0.128 Sum_probs=75.7
Q ss_pred ccccccccCCCchHHHHHHhhcCCCCCccEEEeCh----HHHHHHHHcCcccccCCCC-------Ccchhccccccc---
Q 040874 4 CASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD----PWLSFAIEKRLIEPIAGGE-------DQDWFKCLSHKW--- 69 (165)
Q Consensus 4 ~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~----~~~~~~~~~gll~pld~~~-------~~~~~~~i~~~~--- 69 (165)
|+.|.-.+.......+||++...++..|||+.... .++..+++.|+|.||+... .....+++.+.+
T Consensus 61 ~~~i~V~~~~~~~~~~kl~~~~~sg~~PDi~~~~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (437)
T TIGR03850 61 HEGVKVELTVSKNLEDVITPQIQAGDYPDVVYLATGRESGLTETLIKDKALADLTDVLDMKVPGEDVTVKDKILPGFVGS 140 (437)
T ss_pred CCCceEEEEeCccHHHHHHHHHhCCCCCCEEEeCCCCCcccHHHHHhcCCcccChHHHcCcCCCcchhHHhhhChHhhhc
Confidence 34444333333345667766554445799999865 3577899999999998421 000112333322
Q ss_pred -c---cCCCceEeeeeeecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 70 -K---RTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 70 -~---~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
+ ..+|+.|++|+..++.+|+||+++++++|.++|+||++|.+.
T Consensus 141 ~~~~~~~~g~~ygvP~~~~~~~l~yNkdl~~~aG~~~P~Twde~~~~ 187 (437)
T TIGR03850 141 SATNPYGDGKTYLAPMFYSPTGLFYNKTLFEEKGWEVPTTWDEMFAL 187 (437)
T ss_pred ccccccCCCeEEEEEeecceEEEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 1 147899999999999999999999999998899999999864
No 15
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=99.21 E-value=1.6e-11 Score=102.80 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=79.7
Q ss_pred cccccccccCCCchHHHHHHhhcCCCCCccEEEeCh---HHHHHHHHcCcccccCCCCCcchh--------cccccccc-
Q 040874 3 LCASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD---PWLSFAIEKRLIEPIAGGEDQDWF--------KCLSHKWK- 70 (165)
Q Consensus 3 ~~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~---~~~~~~~~~gll~pld~~~~~~~~--------~~i~~~~~- 70 (165)
.||.|.-.+.+.++..+||++...++..|||+.... .++..++..|+|+||+...-.+++ +++.+...
T Consensus 66 ~~p~i~V~~~~~~~~~~kl~~~~asg~~PDi~~~~~~~~~~~~~~~~~g~l~~L~d~~~~~~~~~~~~~~~~~~~~~~~~ 145 (450)
T TIGR03851 66 KYPGATVKVSPTQKIAPQLQPRFAGGNPPDLIDNSGADAMDMSALVAEGQLEDLTPLFDAPSWDDPGKKVRDTLLPGVLE 145 (450)
T ss_pred HCCCcEEEEeechhhHHHHHHHHhCCCCCcEEeecCcccccHHHHHhCCCcccchHHhccccccccchhHhhhhchhhhh
Confidence 356665555555788889887654455799998642 257789999999999852100111 23333221
Q ss_pred --cCCCceEeeeeeecceEEEEechhcccCCCCCCCCHHHhcC
Q 040874 71 --RTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWR 111 (165)
Q Consensus 71 --~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d 111 (165)
..+|+.|+||+..++.+++||+++++++|.++|+||++|.+
T Consensus 146 ~~~~dG~~ygvP~~~~~~~l~YNkdl~~~aGl~~P~Twde~~~ 188 (450)
T TIGR03851 146 PGTFDGKPYALNYVYTVYGLWYSATLFEENGWTPPKTWDEFLA 188 (450)
T ss_pred hceECCEEEEEeecceeeEEEEcHHHHHHcCCCCCCCHHHHHH
Confidence 25789999999999999999999999999889999999975
No 16
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=6.9e-11 Score=94.53 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=80.0
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEE
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i 88 (165)
+..+..+.++|+.++..+..+.||++.++. .+.++.++|+++|+... .++.+...+.. ..+.|+.. .++..++
T Consensus 16 ~~~~s~~~~~~~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~----~~~~i~~~~~~-~~~~~~~~-~~~~~~~ 89 (299)
T COG1840 16 VDAGSGELLARIIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSP----ELDEIPAWAPD-PDGAYGGG-YVGPLVF 89 (299)
T ss_pred eeCCcHHHHHHHHHhhcCCCCCcEEEecCcchHHHHHhcCCccccCCc----cHhhhhhhccc-hhcCCCcc-eEeeEEE
Confidence 344555899999988765556799999874 67788888999998763 34555554442 22223332 6788999
Q ss_pred EEechhcccCCCCCCCCHHHhcCcccCCceeeecCh
Q 040874 89 AYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 89 ~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~ 124 (165)
+||++.++....+.|+||.||.+|+|||+|++.+..
T Consensus 90 ~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~ 125 (299)
T COG1840 90 AVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPT 125 (299)
T ss_pred EEehhhccccCCCCCCCHHHhcCHhhcCCccccCCc
Confidence 999999887433458999999999999999777743
No 17
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=99.18 E-value=3.8e-11 Score=98.77 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=68.3
Q ss_pred chHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEe
Q 040874 15 SLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYK 91 (165)
Q Consensus 15 ~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN 91 (165)
+...+|+.+...++..|||+.....++..+++.|+|+||+... ...+++.+... ..+|+.|+||+..++.+++||
T Consensus 67 ~~~~~~l~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~l~~~~--~~~~~~~~~~~~~~~~dg~~YgvP~~~~~~~l~yn 144 (396)
T PRK09474 67 DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEVTPSK--AFKDKLVPFTWDAVRYNGKLIGYPIAVEALSLIYN 144 (396)
T ss_pred chHHHHHHHHhhcCCCCcEEEeCchhHHHHHHCCccccCCccH--HHHhhcCHHHHHHeeECCEEEEEeeeccceeEEEe
Confidence 4455566554433346999999888899999999999998642 11233332221 257889999999999999999
Q ss_pred chhcccCCCCCCCCHHHhcC
Q 040874 92 KSKFRKHDLAPIEDWKDLWR 111 (165)
Q Consensus 92 ~~~v~~~g~~~p~sw~dL~d 111 (165)
++++++ +|+||+||.+
T Consensus 145 kdl~~~----~P~Twdel~~ 160 (396)
T PRK09474 145 KDLVPT----PPKTWEEIPA 160 (396)
T ss_pred hhhccC----CCcCHHHHHH
Confidence 999986 8999999985
No 18
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.15 E-value=1.5e-10 Score=92.22 Aligned_cols=112 Identities=25% Similarity=0.361 Sum_probs=89.4
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEE
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i 88 (165)
.+++.-++++|++-++.+ +.+||++. +...+.++.+.|++.|...... . .++...|.. + .+.+||.+|..+|
T Consensus 62 ~~~d~v~llnRl~leg~~-~~ADvvvGldn~~l~~A~~~glf~~~~~d~~--~-~~vp~~~~~-d--~f~~P~DyGy~a~ 134 (336)
T COG4143 62 ALGDGVELLNRLILEGKN-PKADVVVGLDNNLLARARETGLFAPYGVDAS--D-VPVPEGWKI-D--TFALPYDYGYFAF 134 (336)
T ss_pred EcCcHHHHHHHHHHcCCC-CCCcEEEecChHHHHHHHhcCCcccCCCCcc--c-CCCCccccc-C--ccccccccceEEE
Confidence 467788999999988764 68999996 6668999999999999985431 1 345555552 2 2479999999999
Q ss_pred EEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHH
Q 040874 89 AYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVL 132 (165)
Q Consensus 89 ~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al 132 (165)
+||++.+++ +|+|-+||..|+|+++|.+.|..++.-|.++
T Consensus 135 vYd~~~~~~----ppksL~dL~~~~y~~~ii~qdPrtSspGl~f 174 (336)
T COG4143 135 VYDKTKLKN----PPKSLKDLVEPEYAGKIIYQDPRTSSPGLGF 174 (336)
T ss_pred EEchHHhcC----CcccHHHhcCccccCcEEecCCCCCCccHHH
Confidence 999999997 8999999999999999999995555444444
No 19
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=99.03 E-value=3.9e-10 Score=94.30 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCC-Ccc---hhccccccc----cc-CCCceEeeeeee
Q 040874 13 NLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGE-DQD---WFKCLSHKW----KR-TRGKIWAAPYRW 83 (165)
Q Consensus 13 ~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~-~~~---~~~~i~~~~----~~-~~g~~y~vP~~~ 83 (165)
+..+.++++.+...++..|||+.....+...+++.|+|+||+... ... ..+++.+.. .. .+|+.|++|+..
T Consensus 65 ~~~~~~~~~~~a~~~g~~PDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~YglP~~~ 144 (438)
T PRK10974 65 NYEQSLAAGIAAFRSGNAPAILQVYEVGTATMMASKAIKPVYDVFKDAGIPFDESQFVPTVAGYYSDAKTGHLLSQPFNS 144 (438)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHhhCCCcccHHHHHhhcCCCCChHHhchHHHhhcccCCCCcEEEeeccC
Confidence 344444444442222346999988766667788999999996310 000 112333322 21 378999999999
Q ss_pred cceEEEEechhcccCCCC---CCCCHHHhcC
Q 040874 84 GAMMIAYKKSKFRKHDLA---PIEDWKDLWR 111 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~---~p~sw~dL~d 111 (165)
++.+++||+++|+++|.. +|+||++|.+
T Consensus 145 ~~~~l~YNkdlf~~aGi~~~~~P~Twde~~~ 175 (438)
T PRK10974 145 STPVLYYNKDAFKKAGLDPEQPPKTWQDLAA 175 (438)
T ss_pred CCceEEEcHHHHHHcCCCCCCCCCCHHHHHH
Confidence 999999999999998853 5999999975
No 20
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3e-09 Score=87.29 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=75.9
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCc-ccccCCCCC-cchhcccccccc---cCCCceEeee
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRL-IEPIAGGED-QDWFKCLSHKWK---RTRGKIWAAP 80 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gl-l~pld~~~~-~~~~~~i~~~~~---~~~g~~y~vP 80 (165)
.|.-+..+.++..+++.+...++..+||++....+...+...|. |.+|..... ....+.+.+... ..+|+.|++|
T Consensus 63 kv~~~~~~~~~~~~~l~~~~~ag~~PDv~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P 142 (433)
T COG1653 63 KVKVVNVPGDDYLQKLLTALASGDAPDVVQLDPEWLAAFAKAGGLLEDLTDLINPKLDLSDFPPALLDTTTYDGKLYGVP 142 (433)
T ss_pred EEEEEecCcHHHHHHHHHHHhcCCCCCeEEeccchHHHHHhcccccchhhhhhhcccChhhcCHHhHhheeeCCEEeecc
Confidence 44444444558899999876554467999998877777888876 777765420 012233333322 2578999999
Q ss_pred eeecceEEEEechhcccCCCCCC-CCHHHhc
Q 040874 81 YRWGAMMIAYKKSKFRKHDLAPI-EDWKDLW 110 (165)
Q Consensus 81 ~~~~~~~i~YN~~~v~~~g~~~p-~sw~dL~ 110 (165)
+.+...+++||+|.++++|.++| +||++|.
T Consensus 143 ~~~~~~~~~ynkdlf~~aG~~~pp~tw~e~~ 173 (433)
T COG1653 143 FNSSTPALFYNKDLFKKAGLKPPPKTWDELL 173 (433)
T ss_pred ccccCceEEEeHHHHHHhCCCCCCCCHHHHH
Confidence 99999999999999999997775 9999975
No 21
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=98.84 E-value=8.4e-09 Score=86.42 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=90.3
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcc---hhc-cc-------ccccc-----
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQD---WFK-CL-------SHKWK----- 70 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~---~~~-~i-------~~~~~----- 70 (165)
.+.+|++++++.++++.+ .|||+++++..+.+|+++|+|+|||.+++.- +-. .. ...|.
T Consensus 52 ~y~tf~sne~l~~kf~~~-----~YDvaVpS~y~vakl~~~~~l~kIDwsKfnl~~~~~~~~~i~~~~~~~~lFt~~v~~ 126 (493)
T PF02030_consen 52 KYRTFDSNEILYNKFKTG-----TYDVAVPSDYMVAKLASENLLQKIDWSKFNLKKENNSTNTINNANDAKKLFTDEVFE 126 (493)
T ss_pred eEEEeCchHHHHHHhccC-----ceeEEeccHHHHHHHHHcCCcccccHHHhccccccCccccccCchhHHHhhhHHHHH
Confidence 467899999999999883 5999999999999999999999999987510 000 00 00010
Q ss_pred ----c---CCCc--eEeeeeeecceEEEEechhcccCCCCCCCCHHHhcCc------cc-CCceeeecChHHHHHHHHHH
Q 040874 71 ----R---TRGK--IWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRP------EL-AGRISMVNSPREVIGSVLKY 134 (165)
Q Consensus 71 ----~---~~g~--~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~------~~-kgki~~~d~~~~~~~~al~~ 134 (165)
. ..++ .|+|||+|+-.+|+||...++... ..--+|.+++.. ++ ..|+++.|++++++.++-++
T Consensus 127 i~~~~~d~k~~~LldY~IPYF~QDLvfaY~~eki~~L~-~~~v~w~~l~k~i~~~~~rfn~~Kl~~IDd~rti~sI~k~~ 205 (493)
T PF02030_consen 127 ILASYTDLKNNSLLDYGIPYFWQDLVFAYNGEKIKNLK-NEDVSWSDLIKEINNHKDRFNNNKLAIIDDARTIYSISKLI 205 (493)
T ss_pred HHHHhhhcccchhhhhcccceeeeeEEEEcccccchhh-hcCCcHHHHHHHHhhCcccccccceEEeccHHHHHHHHHHH
Confidence 0 0121 499999999999999998876531 134699998743 12 35899999999998888665
Q ss_pred h
Q 040874 135 M 135 (165)
Q Consensus 135 ~ 135 (165)
.
T Consensus 206 ~ 206 (493)
T PF02030_consen 206 K 206 (493)
T ss_pred h
Confidence 5
No 22
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=98.60 E-value=2.3e-08 Score=78.53 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCCchHHHHHHhhcCCCC-CccEEEeChHHHHHHHHcCcccccCCCCCcch-------hcc----cccccccCCCceEee
Q 040874 12 NNLSLPFNKVKAKSASYM-AADLVSVGDPWLSFAIEKRLIEPIAGGEDQDW-------FKC----LSHKWKRTRGKIWAA 79 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~-~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~-------~~~----i~~~~~~~~g~~y~v 79 (165)
.+.++..+|+.+...++. ++||+..+..++.++++.|+|+||+....... .+. ..+......+ .| +
T Consensus 32 ~~~~~~~~~~~~~~~sg~~p~Dv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y-v 109 (315)
T PF01547_consen 32 IPWDDYQQKLNTALASGDAPYDVIFIDNDWLPQLAEAGLLMDLDDYLEKYAPDWKKDFADNLISSFDPKIFDSKG-IY-V 109 (315)
T ss_dssp ETHHHHHHHHHHHHHTTGSSESEEEEEGHHHHHHHHTTSBEHCHHHHHHHTHHCCSHCHHCCHHHBCHHHHHHEE-ES-E
T ss_pred CCCccHHHHHHHHHHcCCChhheEEeccccchhhhhhhccCcCCHHHhhccccccccccccchhhhhhheEecce-EE-E
Confidence 355777777765442223 45999998889999999999999986310000 001 1111110023 79 9
Q ss_pred eeeecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 80 PYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 80 P~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
|+.. ..+++||+++++++|.++|+||++|.+.
T Consensus 110 P~~~-~~~~~ynkdl~~~~Gl~~p~Twde~~~~ 141 (315)
T PF01547_consen 110 PYSG-PNGLYYNKDLFEKAGLDPPWTWDEFLEA 141 (315)
T ss_dssp EEEE-EEEEEEETTTHHHTTSSSTSBHHHHHHH
T ss_pred Eeee-eeEEEEchhHHHHcCCCCCCCHHHHHHH
Confidence 9995 8999999999999998889999999754
No 23
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=98.40 E-value=1.1e-06 Score=71.01 Aligned_cols=91 Identities=22% Similarity=0.297 Sum_probs=67.3
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-.|+++..+..+|+.|. ++||++..+. ++..+.+.|++.+-.... +. . -++||. +.
T Consensus 46 v~~~~g~Sg~l~~Qi~~Ga----~~Dvf~sa~~~~~~~l~~~g~i~~~~~~~-------~~-----~----n~~~~~-~~ 104 (315)
T TIGR00971 46 IRQSHGGSGKQATSVINGI----EADVVTLALAYDVDAIAERGRIDKDWIKR-------LP-----D----NSAPYT-ST 104 (315)
T ss_pred EEEecCCcHHHHHHHHcCC----CcCEEecCCHHHHHHHHHCCCCCcchhhh-------Cc-----c----CCCccc-ee
Confidence 5568999999999999775 5999999775 899999999866422111 10 0 135666 68
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHH
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPRE 126 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~ 126 (165)
++|+|+++... .|+||+||+++++ ||++.+ |..
T Consensus 105 lvl~v~k~~~~-----~i~sw~dL~~~~~--kiai~d-p~~ 137 (315)
T TIGR00971 105 IVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPN-PKS 137 (315)
T ss_pred EEEEEeCCCCC-----CCCCHHHHhCCCc--EEEeCC-hhh
Confidence 99999988664 4789999999875 688877 443
No 24
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=98.18 E-value=9.7e-06 Score=61.44 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=62.6
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-++++..+++++|+.+ +.+||++..+. .+..+.+.|+++|..... +..+
T Consensus 22 ~V~~~~~gs~~l~~~l~~~----~~aDv~~~~~~~~~~~l~~~g~~~~~~~~~-----------------------~~~~ 74 (216)
T TIGR01256 22 KVVFSFGSSGTLYTQIENG----APADLFISADNKWPKKLVDKGLVVAGSRFT-----------------------YAGN 74 (216)
T ss_pred eEEEEeCChHHHHHHHHcC----CCCcEEEECCHHHHHHHHHCCCCCCCchhe-----------------------EEcc
Confidence 4555678899999999863 25999999775 678899999988765310 2234
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhcCccc-CCceeeecC
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLWRPEL-AGRISMVNS 123 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~-kgki~~~d~ 123 (165)
.++|+||++ . .|+||+||. +.+ ++||++.|.
T Consensus 75 ~~~l~~~~~---~----~~~s~~dL~-~~~~~~~i~~~~P 106 (216)
T TIGR01256 75 KLVLISPKN---R----VVDDLDILK-KWVADKRVAIGDP 106 (216)
T ss_pred EEEEEEECC---C----CcCcHHHHh-hcccCCeEEecCC
Confidence 578899887 2 579999997 766 799999874
No 25
>PRK10752 sulfate transporter subunit; Provisional
Probab=98.17 E-value=5.6e-06 Score=67.33 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=66.8
Q ss_pred ccccccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeee
Q 040874 4 CASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYR 82 (165)
Q Consensus 4 ~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~ 82 (165)
-+++...|++++++..+|..+. .+||++..+ .++..+.++|++++-. ...+.. +.. | +
T Consensus 54 ~V~v~~s~ggSg~l~~qI~~g~----~aDV~~~a~~~~~~~l~~~gli~~~~-------~~~l~~-----n~~----~-~ 112 (329)
T PRK10752 54 NVVIRQSHGGSGKQATSVINGI----EADVVTLALAYDVDAIAERGRIDKNW-------IKRLPD-----NSA----P-Y 112 (329)
T ss_pred ceEEEeCCCChHHHHHHHHcCC----CCCEEEeCCHHHHHHHHHCCCCCCcc-------hhhhhc-----ccc----c-c
Confidence 3556678899999999998643 699999977 4888899999988721 122221 111 2 3
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
++.++|++++...+ .|++|+||+++.+ +|++.+.
T Consensus 113 ~~~lviiv~~gnp~-----~i~~w~DL~~~~~--~I~i~dP 146 (329)
T PRK10752 113 TSTIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNP 146 (329)
T ss_pred ceeEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCC
Confidence 56778999887544 4789999999876 7999884
No 26
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=98.17 E-value=6.4e-06 Score=67.21 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=66.3
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|...|+++.....++..|. ++||+++.+. ++..+.+.|.+.+-+.. ..+. . .++|| ++
T Consensus 61 ~i~~s~ggSg~~~~qi~~G~----~ADV~~~A~~~~~d~l~~~g~li~~~~~------~~~~-------~--n~~p~-~s 120 (338)
T PRK10852 61 TIKQSHAGSSKQALAILQGL----KADVVTYNQVTDVQILHDKGKLIPADWQ------SRLP-------N--NSSPF-YS 120 (338)
T ss_pred EEEEcCCCcHHHHHHHhcCC----CcCEEecCCHHHHHHHHHCCCCCCcchh------hccc-------c--cCCcc-cc
Confidence 34567888888888888865 5899999775 88889999944332211 1111 1 25676 78
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
+++|+||++..+ .|+||+||+++++ ||++.+.
T Consensus 121 ~lV~vv~kgnpk-----~i~sw~DL~~~~~--kI~i~nP 152 (338)
T PRK10852 121 TMAFLVRKGNPK-----NIHDWNDLVRSDV--KLIFPNP 152 (338)
T ss_pred eEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCC
Confidence 899999998764 5899999999875 6999884
No 27
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=98.13 E-value=1.8e-05 Score=60.42 Aligned_cols=85 Identities=22% Similarity=0.402 Sum_probs=64.3
Q ss_pred cccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeee
Q 040874 5 ASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRW 83 (165)
Q Consensus 5 ~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~ 83 (165)
..|.-++.+..++.++|+++. .+||+++++. ++.++.++|++.| ....|+..
T Consensus 26 ~~v~v~~~~s~~~~~~l~~g~----~~Dv~~~~~~~~~~~l~~~g~~~~-----------------------~~~~~~~~ 78 (230)
T PF13531_consen 26 IKVEVSFGGSGELVRRLQAGK----KPDVFIPASSEWLERLAAAGLVDP-----------------------GSPAPLAR 78 (230)
T ss_dssp EEEEEEEECHHHHHHHHHTT-----S-SEEEESSHHHHHHHHHTTTCSG-----------------------GGEEEEEE
T ss_pred CeEEEEECChHHHHHHHhcCC----CceEEEECCHHHHHHHHhcccccC-----------------------Cccccccc
Confidence 345557788899999998887 4999999874 8888999988776 13446677
Q ss_pred cceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 84 GAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
+.++|+|+++.-. .+.+|+||.++++ ||++.|.
T Consensus 79 ~~~vl~~~~~~~~-----~~~~~~dL~~~~~--~i~~~dP 111 (230)
T PF13531_consen 79 SPLVLAVPKGNPK-----GIRSWADLAQPGL--RIAIPDP 111 (230)
T ss_dssp EEEEEEEETTSTT-----STTCHHHHCSTT----EEEE-T
T ss_pred CceEEEeccCccc-----ccCCHHHHhhccC--EEEecCc
Confidence 7899999999832 5899999999987 8999984
No 28
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=65.10 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=76.3
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc----CCCceEeeeeeecceEEEEechh
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR----TRGKIWAAPYRWGAMMIAYKKSK 94 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~----~~g~~y~vP~~~~~~~i~YN~~~ 94 (165)
+-+-+|...+...|+++.+...+..+...|+|... ..+..||+..+.+++.. .+..-+.+||..+-++|+|.+++
T Consensus 82 a~~AAG~~e~g~VDl~~~~g~n~p~lk~~~~L~~~-~~~~LPnwr~~d~ql~~tdf~~pt~Gl~~~~~~~q~~f~yd~~k 160 (384)
T COG4134 82 AELAAGRDEGGSVDLLWINGENFPTLKEAGLLYTP-WAEDLPNWRYVDHQLPRTDFSVPTEGLESPWGGNQLVFIYDRDK 160 (384)
T ss_pred HHHhcccccCCceEEEEecCccchhhhhccccccc-hhhhCccchhhchhccccccCCCCCcccccccCCcceEEEcccc
Confidence 33334554444699999999999999999988877 32223788877776541 22233889999999999999988
Q ss_pred cccCCCCCCCCHHHhc--CcccCCceeeecCh
Q 040874 95 FRKHDLAPIEDWKDLW--RPELAGRISMVNSP 124 (165)
Q Consensus 95 v~~~g~~~p~sw~dL~--d~~~kgki~~~d~~ 124 (165)
+++ .|+|.+||+ ..+..+|++....+
T Consensus 161 ~~~----~P~s~eeLL~wA~aNP~rf~Y~~P~ 188 (384)
T COG4134 161 VPQ----VPQSFEELLVWAKANPKRFGYPRPP 188 (384)
T ss_pred CCC----CCcCHHHHHHHHHhCcCccccCCCC
Confidence 887 899999994 56889999987644
No 29
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=97.25 E-value=0.0026 Score=49.92 Aligned_cols=89 Identities=19% Similarity=0.397 Sum_probs=60.8
Q ss_pred cccccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeee
Q 040874 5 ASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRW 83 (165)
Q Consensus 5 ~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~ 83 (165)
..|.-.|+++..+..+|..+. ++||++..+ .++..+.++|++.+... .++..
T Consensus 54 ~~v~~~~~~Sg~l~~qi~~g~----~~Dv~~~a~~~~~~~l~~~gl~~~~~~-----------------------~~~a~ 106 (257)
T PRK10677 54 VDVVSSFASSSTLARQIEQGA----PADLFISADQKWMDYAVDKKAIDTATR-----------------------YTLLG 106 (257)
T ss_pred CeEEEEecccHHHHHHHHcCC----CCCEEEECCHHHHHHHHHCCCCCCcch-----------------------heeec
Confidence 345557788888888886442 599999987 57888888888754210 02456
Q ss_pred cceEEEEechhc-ccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 84 GAMMIAYKKSKF-RKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 84 ~~~~i~YN~~~v-~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
+.++|+|+++.- +..+...|++|+||++ ++||++.|.
T Consensus 107 n~lvl~~~~~~~~~~i~~~~~~~~~dLl~---~~~iai~dP 144 (257)
T PRK10677 107 NSLVVVAPKASEQKDFTIDKKTDWKSLLN---GGRLAVGDP 144 (257)
T ss_pred CEEEEEEECCCccccccccCccCHHHhcC---CCeEEEcCC
Confidence 778999998732 1111125789999986 379999884
No 30
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=93.45 E-value=0.31 Score=39.27 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=43.9
Q ss_pred CccEEEeChH-HHHHHHHcC-cccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEEechhcccCCCCCCCCHH
Q 040874 30 AADLVSVGDP-WLSFAIEKR-LIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWK 107 (165)
Q Consensus 30 ~~Dv~~~~~~-~~~~~~~~g-ll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~ 107 (165)
..||+.+.-. .+..+.+.| ++.+ +|+.=.| .-++|| .++++|.+++.--+ .+++|+
T Consensus 92 ~ADVVtlal~~Did~i~~~g~li~~--------dW~~rlp--------~ns~Py-tStivFlVRkGNPK-----~I~DW~ 149 (348)
T COG1613 92 EADVVTLALAYDIDAIAKAGGLIDK--------DWQKRLP--------NNSAPY-TSTIVFLVRKGNPK-----QIRDWD 149 (348)
T ss_pred ccceeeeehhhhHHHHHHhcCCCCc--------chHhhCc--------CCCCCc-cceEEEEEecCCcc-----ccCchH
Confidence 5788887654 566677766 5433 2321111 135676 48889999987655 489999
Q ss_pred HhcCcccCCceeeec
Q 040874 108 DLWRPELAGRISMVN 122 (165)
Q Consensus 108 dL~d~~~kgki~~~d 122 (165)
||..|.- +|..++
T Consensus 150 DL~k~gV--~VItpN 162 (348)
T COG1613 150 DLVKPGV--QVITPN 162 (348)
T ss_pred HhccCCc--EEEcCC
Confidence 9998743 344444
No 31
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.62 Score=36.73 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=61.4
Q ss_pred cccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeee
Q 040874 5 ASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRW 83 (165)
Q Consensus 5 ~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~ 83 (165)
.+|.-.|+++.++..+|.+|.. +|+++..+. ++..+.+.|++.+. +.+++..
T Consensus 57 ~~V~~~f~gS~~l~~qIe~Ga~----~D~fiSa~~~~~~~l~~~g~~~~~-----------------------~~~~fa~ 109 (258)
T COG0725 57 VKVEVEFGGSGALARQIEQGAP----ADLFISADDAYMDKLEDKGLIYAD-----------------------SRIVFAG 109 (258)
T ss_pred CeEEEEecchHHHHHHHHcCCC----cCEEEECCHHHHHHHHhcCCccCC-----------------------ceEEeeC
Confidence 5677789999999999999874 899998665 88888877764332 3334556
Q ss_pred cceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 84 GAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
+.++|++.++--. ...+|.++.+.+ -+|+++-|.
T Consensus 110 n~lvl~~~~~~~~-----~~~~~~~l~~~~-~~~lai~~p 143 (258)
T COG0725 110 NRLVLAVPKGSKK-----KIESLEDLLERP-DVRLAIGDP 143 (258)
T ss_pred CeEEEEEeCCCcc-----CcccHHHHhcCc-CcEEEecCC
Confidence 6788888665322 245599998853 457888773
No 32
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=89.85 E-value=2.2 Score=33.87 Aligned_cols=86 Identities=14% Similarity=0.312 Sum_probs=53.9
Q ss_pred cccccccCCCchHHHHHH-hhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeee
Q 040874 5 ASIDGIFNNLSLPFNKVK-AKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYR 82 (165)
Q Consensus 5 ~~v~~~~~~~~~~~~kl~-a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~ 82 (165)
..|.-.|+++..++.+++ .|. ++||++..+. ++..+.+.|++. ..+++.
T Consensus 29 vkv~~~~~gSg~L~~Qi~e~Ga----p~DVfisAd~~~~~~L~~~g~~~-------------------------~~~~~a 79 (273)
T TIGR03730 29 VDVQREAAGSVAAVRKITELGK----PADILASADYTLIPQMMIPNYAD-------------------------WYIMFA 79 (273)
T ss_pred ceEEEEeCcHHHHHHHHHHcCC----CeeEEEeCCHHHHHHHHhCCCcC-------------------------ceeeEE
Confidence 345557778888888886 443 5899988765 677777666531 113456
Q ss_pred ecceEEEEechh-cccCCCCCCCCH-HHhcCcccCCceeeecC
Q 040874 83 WGAMMIAYKKSK-FRKHDLAPIEDW-KDLWRPELAGRISMVNS 123 (165)
Q Consensus 83 ~~~~~i~YN~~~-v~~~g~~~p~sw-~dL~d~~~kgki~~~d~ 123 (165)
.+.++|+|+++. +... -.+.+| ++|.++. .||++.+.
T Consensus 80 ~n~LVL~~~~~~~~~~~--~~~~~~~~~L~~~~--~rIai~dP 118 (273)
T TIGR03730 80 TNEIVLAYTDKSKYADE--INSDNWYEILQRPD--VRWGFSDP 118 (273)
T ss_pred cccEEEEEeCCCCcccc--cCcchHHHHhcCCC--cEEEEcCC
Confidence 677899887642 1110 023578 4465664 58999774
No 33
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=89.67 E-value=1.8 Score=35.43 Aligned_cols=86 Identities=12% Similarity=0.263 Sum_probs=49.8
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.|+++.++..++..... ++||++..+. ++..+.+.|++ .+.+++..+
T Consensus 61 ~v~~~~~gSg~L~~QI~e~Ga---p~DVfisAd~~~~~~l~~~g~~-------------------------~~~~~fa~n 112 (334)
T PRK04168 61 DVQREAGGSVKCVRKITELGK---KADIMASADYTLIPKMMMPDYA-------------------------DWYVRFATN 112 (334)
T ss_pred eEEEEeCcHHHHHHHHHhcCC---CCCEEEECchhHHHHHhccCcc-------------------------ceeEEEEcc
Confidence 344456666777777742122 4777777654 44444444321 133567788
Q ss_pred ceEEEEechhc-ccCCCCCCCCHHHhc-CcccCCceeeecC
Q 040874 85 AMMIAYKKSKF-RKHDLAPIEDWKDLW-RPELAGRISMVNS 123 (165)
Q Consensus 85 ~~~i~YN~~~v-~~~g~~~p~sw~dL~-d~~~kgki~~~d~ 123 (165)
.++|+|+++.- ... -.+.+|.+++ ++. .||++.+.
T Consensus 113 ~lVl~~~~~~~~~~~--~~~~~~~~lL~~~~--~~Iai~~P 149 (334)
T PRK04168 113 EIVLAYTDKSKYADE--INSDNWYEILQRPD--VKFGFSDP 149 (334)
T ss_pred cEEEEEcCCChhhhh--cccccHHHHhcCCC--cEEEcCCC
Confidence 89999987632 110 1245799855 664 48998773
No 34
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=77.53 E-value=3.3 Score=30.69 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=28.6
Q ss_pred eeeeecceEEEEechhcccCCCCCCCCHHH-hcCcccCCceeeecC
Q 040874 79 APYRWGAMMIAYKKSKFRKHDLAPIEDWKD-LWRPELAGRISMVNS 123 (165)
Q Consensus 79 vP~~~~~~~i~YN~~~v~~~g~~~p~sw~d-L~d~~~kgki~~~d~ 123 (165)
++|..+.++|+|+++... .+++|.| |+++.+ ||++.+.
T Consensus 17 ~~~a~n~lvl~~~~~~~~-----~~~~~~d~L~~~~~--~iai~~P 55 (188)
T PRK03537 17 VPFARNRLCAIARADVML-----TSDNLLDLLLDPDI--RLGTSTP 55 (188)
T ss_pred eeeeeceEEEEEcCCCCC-----CccCHHHHhcCCCc--EEEcCCC
Confidence 467788899999987532 4679988 668875 7999773
No 35
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=69.82 E-value=2.6 Score=33.28 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=37.7
Q ss_pred ccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEEechhcccCCCCCCCCHHHh
Q 040874 31 ADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDL 109 (165)
Q Consensus 31 ~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL 109 (165)
.||+..... .+..|.+.|-|.|-|.. .-.| .-+-|| ++++++.+++.--+ -++.|+||
T Consensus 87 ADVVTfNQVtDVqiLhdkg~lipAdWq-------~~lP--------nnsSPf-YS~~aFLVR~GNPK-----~IkdW~DL 145 (341)
T COG4150 87 ADVVTFNQVTDVQILHDKGKLIPADWQ-------SRLP--------NNSSPF-YSTMAFLVRKGNPK-----NIKDWDDL 145 (341)
T ss_pred cceEEeecceeeeeehhcCCccchhhh-------hhCC--------CCCCcc-ccchHHHhhcCCcc-----cCccHHHH
Confidence 566665443 34445666655554422 1111 123343 56777777766544 47899999
Q ss_pred cCcccCCceeeec
Q 040874 110 WRPELAGRISMVN 122 (165)
Q Consensus 110 ~d~~~kgki~~~d 122 (165)
....- |+.+++
T Consensus 146 vRdDV--k~iFPN 156 (341)
T COG4150 146 VRDDV--KLIFPN 156 (341)
T ss_pred hhhcc--eEecCC
Confidence 86643 344444
No 36
>KOG2951 consensus Inositol monophosphatase [Carbohydrate transport and metabolism]
Probab=43.11 E-value=15 Score=29.22 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=57.6
Q ss_pred CccEEEeChHHHHHHHHcCcccccCCCCCcc---hh--cc--c--cccccc--CCCc---eEeeeeeecceEEEEechhc
Q 040874 30 AADLVSVGDPWLSFAIEKRLIEPIAGGEDQD---WF--KC--L--SHKWKR--TRGK---IWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 30 ~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~---~~--~~--i--~~~~~~--~~g~---~y~vP~~~~~~~i~YN~~~v 95 (165)
.+|+|...|..++.+.-+++.+.++..+++- .. +. + .|.|.- -+|. ++++|+.--+.||++|++.+
T Consensus 41 ~~DlVT~~Dk~vE~~l~e~i~~~~P~hkfIGEE~~a~~~~~~lTd~PTWIIDPIDGTtNFVh~~P~~ciSiGLaink~~v 120 (279)
T KOG2951|consen 41 FVDLVTATDKQVEELLIEGIKARYPSHKFIGEESTAKGETKELTDAPTWIIDPIDGTTNFVHGFPHVCISIGLAINKEPV 120 (279)
T ss_pred ccceeehhHHHHHHHHHHHHHHhCCCceeeeehhhhcCCcceecCCCcEEEcCCCCccccccCCCeeEEeeeehhcCeeE
Confidence 6999999999999999999999998876531 01 11 1 233322 1333 57889998889999998765
Q ss_pred ccCCCCCCCCHHHhcCcccCCceeeec
Q 040874 96 RKHDLAPIEDWKDLWRPELAGRISMVN 122 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d~~~kgki~~~d 122 (165)
-..=..| .-..||.. .+||-+..+
T Consensus 121 ~GvVyNP--~~nel~ta-~~G~GAf~N 144 (279)
T KOG2951|consen 121 VGVVYNP--ILNELYTA-RLGKGAFLN 144 (279)
T ss_pred EEEeccc--hhhhhhhh-hcCccceeC
Confidence 3210113 34466654 355555555
No 37
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=31.38 E-value=2.3e+02 Score=21.46 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=55.6
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEE
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIA 89 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~ 89 (165)
.|.+..+..+.|.+|. .|+... ...+..+...|. -... ..+. .......+...++
T Consensus 41 ~~~~g~~~~~al~~G~-----iD~a~~-~~~~~~~~~~g~---~~~~---~~~~-------------~~~~~~~~g~~lv 95 (252)
T PF13379_consen 41 QFASGADILEALAAGE-----IDIAFV-LAPALIAIAKGA---GGPD---VDIV-------------VLAGLSQNGNALV 95 (252)
T ss_dssp EESSHHHHHHHHHCTS-----SSEEEE-CTHHHHHHHTTT---TT-------EE-------------EEEECSBSSEEEE
T ss_pred EcCCHHHHHHHHHcCC-----CCEEEe-chHHHHHHHcCC---CCcc---cceE-------------EeeccCCCceEEE
Confidence 4677788888888664 688888 544445566665 0000 0010 1111223456778
Q ss_pred EechhcccCCCCCCCCHHHhcCccc--CCce-eeec--ChHH-HHHHHHHHhCCCC
Q 040874 90 YKKSKFRKHDLAPIEDWKDLWRPEL--AGRI-SMVN--SPRE-VIGSVLKYMGASY 139 (165)
Q Consensus 90 YN~~~v~~~g~~~p~sw~dL~d~~~--kgki-~~~d--~~~~-~~~~al~~~G~~~ 139 (165)
.+++.... ...+||+||+.... +|+. ++.. +... ++..+|...|+++
T Consensus 96 v~~~~~~~---~~~~~~~dl~~~~~~~kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~ 148 (252)
T PF13379_consen 96 VRNDLKDA---SDIKSLADLIKKRKAQKGKKIAVPFPGSTHDMLLRYLLKKAGLDP 148 (252)
T ss_dssp ECGGGTTC---STTCCGHHHHHTCCSCSTEEEEESSTTSHHHHHHHHHHHHTT--T
T ss_pred EcCccccC---CCccCHHHHHhhhcccCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Confidence 88775443 26799999975422 6654 4422 2222 3445677889988
No 38
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=30.26 E-value=1.7e+02 Score=21.82 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=37.4
Q ss_pred eEeeeeeecceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC---hHHHHHHHHHHhCCCC
Q 040874 76 IWAAPYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS---PREVIGSVLKYMGASY 139 (165)
Q Consensus 76 ~y~vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~---~~~~~~~al~~~G~~~ 139 (165)
.--|++..-..|+++++..-. .+++|+||.++.. ++.-+.. .+..|...+...|.++
T Consensus 61 ~v~v~~~~r~~Gl~v~~~np~-----~i~~~~dL~~~~~--r~vnR~~GSGtR~l~d~~l~~~gi~~ 120 (193)
T PF12727_consen 61 VVLVRLARREQGLIVRPGNPK-----GITSLEDLADPGL--RFVNRQPGSGTRILFDQLLAEEGIDP 120 (193)
T ss_pred EEEEeeeEEeeeEEEeCCCCc-----cCCCHHHhccCCc--EEEECCCCCHHHHHHHHHHHHcCCCh
Confidence 455666677789999887543 4799999976532 3333332 3457777776667765
No 39
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=25.00 E-value=55 Score=23.87 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=37.4
Q ss_pred HHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEEechhcc
Q 040874 18 FNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKSKFR 96 (165)
Q Consensus 18 ~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~YN~~~v~ 96 (165)
...++....+ -+.|.+.... .--.++..|.+.||+-..-...+..+....+-.+|..|.+|+. +-.+.+..+
T Consensus 19 ~~~~~~~a~~--lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~~~~rL~~G~~wpiPI~-----L~v~~e~~~ 91 (160)
T PF14306_consen 19 REELKEEAES--LPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVLETMRLPDGTLWPIPIV-----LDVSEEEAK 91 (160)
T ss_dssp HHHHHHHHTT--SEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHHHHSBETTSSB--S--------EEECHHHHT
T ss_pred HHHHHHHHhh--CCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHHhhCCcCCCCEEeEEEE-----EECCHHHHH
Confidence 3344444332 3555554433 3355899999999986432234555666555567888888865 446666544
Q ss_pred c
Q 040874 97 K 97 (165)
Q Consensus 97 ~ 97 (165)
.
T Consensus 92 ~ 92 (160)
T PF14306_consen 92 S 92 (160)
T ss_dssp T
T ss_pred h
Confidence 3
Done!