Query 040874
Match_columns 165
No_of_seqs 179 out of 1240
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 99.9 7.3E-26 2.5E-30 180.6 11.4 147 9-162 41-192 (333)
2 4eqb_A Spermidine/putrescine A 99.9 2.1E-24 7.3E-29 171.6 11.2 145 10-162 40-189 (330)
3 3ttm_A Polyamine transport pro 99.9 2E-23 7E-28 166.6 6.9 150 10-163 39-202 (346)
4 3ttn_A Polyamine transport pro 99.9 6.5E-23 2.2E-27 163.0 7.1 149 10-162 36-197 (340)
5 1pot_A POTD, spermidine/putres 99.9 1.2E-21 4.1E-26 155.3 10.4 144 11-160 36-184 (325)
6 4i1d_A ABC transporter substra 99.8 2.9E-21 9.8E-26 152.9 9.2 138 14-162 43-183 (324)
7 4euo_A ABC transporter, substr 99.8 3.1E-20 1.1E-24 147.1 10.6 134 18-161 40-178 (320)
8 2v84_A Spermidine/putrescine A 99.8 6.8E-20 2.3E-24 146.5 10.0 140 12-159 58-204 (343)
9 1a99_A POTF, putrescine-bindin 99.8 7.2E-20 2.5E-24 145.9 6.6 145 12-160 37-196 (344)
10 3pu5_A Extracellular solute-bi 99.8 6E-19 2.1E-23 140.0 9.6 142 7-159 37-188 (333)
11 3rpw_A ABC transporter; struct 99.8 2.6E-19 8.8E-24 143.9 7.4 139 15-162 70-218 (365)
12 4edp_A ABC transporter, substr 99.7 4.7E-17 1.6E-21 129.0 6.6 143 7-159 65-212 (351)
13 2qry_A Thiamine-binding peripl 99.5 7.8E-15 2.7E-19 116.5 7.5 99 12-124 61-162 (330)
14 3e13_X Putative iron-uptake AB 99.5 2.1E-14 7.3E-19 112.6 9.1 110 6-124 29-140 (322)
15 2pt1_A Iron transport protein; 99.5 1.5E-14 5.3E-19 114.5 7.6 108 7-123 47-155 (334)
16 1xvx_A YFUA; periplasmic iron 99.5 1.6E-14 5.5E-19 113.4 7.4 106 7-121 33-139 (312)
17 1q35_A Iron binding protein FB 99.5 8.2E-14 2.8E-18 109.6 8.6 104 12-123 34-138 (320)
18 1nnf_A Iron-utilization peripl 99.5 6.7E-14 2.3E-18 109.6 8.0 107 7-122 28-137 (309)
19 3c9h_A ABC transporter, substr 99.5 1.3E-13 4.4E-18 110.5 8.6 110 7-125 63-180 (355)
20 3k01_A Acarbose/maltose bindin 99.5 2.7E-14 9.2E-19 116.2 3.8 130 10-139 63-203 (412)
21 2voz_A FUTA2, periplasmic iron 99.4 1.3E-13 4.5E-18 109.5 7.1 104 11-123 61-165 (346)
22 1elj_A Maltodextrin-binding pr 99.4 1.6E-13 5.5E-18 110.6 7.6 103 4-111 33-139 (381)
23 2gha_A Maltose ABC transporter 99.4 3.3E-13 1.1E-17 108.9 8.0 106 10-122 35-150 (382)
24 2heu_A Sugar ABC transporter, 99.4 2.7E-13 9.3E-18 110.1 7.4 109 4-115 45-160 (401)
25 3quf_A Extracellular solute-bi 99.4 1.6E-13 5.3E-18 111.7 5.8 108 12-122 65-180 (414)
26 2zyo_A Solute-binding protein; 99.4 5E-13 1.7E-17 108.2 6.9 109 7-121 51-168 (397)
27 1y9u_A Putative iron binding p 99.4 1.4E-12 4.8E-17 102.6 9.2 99 12-123 38-139 (323)
28 2uvj_A TOGB, ABC type periplas 99.4 2.3E-13 7.8E-18 110.6 4.4 103 10-112 41-147 (408)
29 3uor_A ABC transporter sugar b 99.4 1.1E-13 3.6E-18 114.6 1.7 103 10-112 63-172 (458)
30 1mh3_A Maltose binding-A1 home 99.4 9.3E-13 3.2E-17 107.5 7.3 97 19-121 45-148 (421)
31 4hs7_A Bacterial extracellular 99.4 3E-12 1E-16 104.4 10.0 109 8-122 72-189 (420)
32 4g68_A ABC transporter; transp 99.3 7.7E-13 2.6E-17 109.3 5.8 106 7-112 96-205 (456)
33 2gh9_A Maltose/maltodextrin-bi 99.3 1.3E-12 4.6E-17 105.4 7.0 111 7-122 32-151 (386)
34 3csg_A MBP, maltose-binding pr 99.3 2.1E-12 7.3E-17 107.0 7.7 98 19-122 43-147 (461)
35 1urs_A Maltose-binding protein 99.3 1.2E-12 4.1E-17 106.2 6.0 103 12-122 66-173 (402)
36 4hw8_A Bacterial extracellular 99.3 1.2E-12 4.1E-17 106.8 6.0 101 6-112 70-173 (420)
37 2z8f_A Galacto-N-biose/lacto-N 99.3 4.9E-13 1.7E-17 109.0 3.5 96 16-112 60-159 (412)
38 4h1g_A Maltose binding protein 99.3 1.1E-12 3.8E-17 114.7 5.6 109 6-120 33-148 (715)
39 1y4c_A Maltose binding protein 99.3 2.4E-12 8.1E-17 108.3 7.3 97 19-121 45-148 (494)
40 1hsj_A Fusion protein consisti 99.3 1.8E-12 6.2E-17 108.0 6.4 97 19-121 45-148 (487)
41 2zxt_A Maltose-binding peripla 99.3 1.6E-12 5.5E-17 108.2 6.0 97 19-121 45-148 (465)
42 2xd3_A MALX, maltose/maltodext 99.3 9.9E-13 3.4E-17 107.3 4.7 101 7-115 64-170 (416)
43 2vgq_A Maltose-binding peripla 99.3 2.8E-12 9.7E-17 106.9 7.3 98 19-122 60-164 (477)
44 2xz3_A Maltose ABC transporter 99.3 1.8E-12 6.1E-17 107.9 5.9 97 19-121 46-149 (463)
45 3oo8_A ABC transporter binding 99.3 8.8E-13 3E-17 107.2 3.4 103 8-112 61-168 (415)
46 4exk_A Maltose-binding peripla 99.3 1.9E-12 6.4E-17 108.6 5.3 100 7-112 37-139 (487)
47 4dxb_A RG13, maltose-binding p 99.3 9.3E-13 3.2E-17 113.7 3.1 97 10-112 36-135 (637)
48 3dm0_A Maltose-binding peripla 99.3 1.5E-12 5E-17 112.2 4.1 103 12-120 38-147 (694)
49 3mq9_A Bone marrow stromal ant 99.3 2.9E-12 1E-16 106.8 5.8 101 14-120 54-161 (471)
50 3iot_A Maltose-binding protein 99.3 2.8E-12 9.7E-17 105.9 5.2 93 14-112 40-135 (449)
51 4b3n_A Maltose-binding peripla 99.3 1.4E-12 4.9E-17 111.8 3.3 97 10-112 50-149 (602)
52 3ob4_A Conglutin, maltose ABC 99.3 2.6E-12 8.9E-17 107.9 4.6 102 14-121 40-148 (500)
53 1eu8_A Trehalose/maltose bindi 99.3 2.7E-12 9.2E-17 104.3 4.3 102 10-111 39-150 (409)
54 1r6z_P Chimera of maltose-bind 99.3 5.1E-12 1.7E-16 106.1 6.0 97 19-121 46-149 (509)
55 4gqo_A LMO0859 protein; virule 99.3 4.2E-12 1.4E-16 103.6 5.4 100 12-111 68-175 (433)
56 3n94_A Fusion protein of malto 99.3 3.2E-12 1.1E-16 106.2 4.7 101 14-120 42-149 (475)
57 3oai_A Maltose-binding peripla 99.2 3.8E-12 1.3E-16 105.8 4.6 101 14-120 40-147 (507)
58 2b3f_A Glucose-binding protein 99.2 8.4E-13 2.9E-17 107.2 0.5 106 15-120 44-161 (400)
59 3i3v_A Probable secreted solut 99.2 1.1E-12 3.8E-17 106.3 1.1 98 15-112 49-153 (405)
60 3h3g_A Fusion protein of malto 99.2 7.5E-12 2.6E-16 105.9 5.5 101 14-120 42-149 (539)
61 3o3u_N Maltose-binding peripla 99.2 7.1E-12 2.4E-16 105.7 5.2 101 14-120 40-147 (581)
62 3py7_A Maltose-binding peripla 99.2 5.9E-12 2E-16 106.1 4.7 101 14-120 41-148 (523)
63 3mp6_A MBP, SGF29, maltose-bin 99.2 7.4E-12 2.5E-16 105.6 4.5 101 14-120 41-148 (522)
64 4aq4_A SN-glycerol-3-phosphate 99.2 6.3E-12 2.1E-16 101.7 3.8 101 12-112 44-156 (419)
65 3thi_A Protein (thiaminase I); 99.2 8.1E-12 2.8E-16 100.0 3.5 80 29-112 48-130 (371)
66 3f5f_A Maltose-binding peripla 99.2 1.4E-11 4.6E-16 106.7 4.9 100 15-120 41-147 (658)
67 3osr_A Maltose-binding peripla 99.2 1E-11 3.5E-16 107.7 4.0 102 14-121 76-184 (653)
68 3h4z_A Maltose-binding peripla 99.2 1.2E-11 4.3E-16 105.5 4.5 101 14-120 40-147 (568)
69 2nvu_B Maltose binding protein 99.1 4.8E-11 1.7E-15 105.5 5.2 100 14-119 44-150 (805)
70 3osq_A Maltose-binding peripla 99.1 3.8E-11 1.3E-15 104.2 4.0 102 15-122 77-185 (661)
71 2w7y_A FCSSBP, probable sugar 99.0 2.3E-11 7.9E-16 99.4 -0.3 106 16-121 85-202 (430)
72 3vlv_A ALGQ1; sugar binding pr 98.9 3.8E-10 1.3E-14 94.4 3.7 97 14-110 51-161 (502)
73 3omb_A Extracellular solute-bi 98.9 1.1E-10 3.7E-15 98.3 -0.0 99 13-112 78-191 (535)
74 3a09_A ALGQ1; sugar binding pr 98.9 1.5E-09 5.1E-14 89.6 6.1 100 12-111 49-162 (490)
75 1sbp_A Sulfate-binding protein 98.8 4.6E-09 1.6E-13 81.9 6.3 84 11-122 42-126 (310)
76 3cg1_A UPF0100 protein PF0080; 98.4 4.4E-07 1.5E-11 70.6 6.7 80 10-123 43-129 (296)
77 3cfx_A UPF0100 protein MA_0280 98.3 1.9E-06 6.4E-11 67.2 8.8 88 6-124 34-123 (296)
78 3cij_A UPF0100 protein AF_0094 98.3 2.5E-06 8.5E-11 66.4 8.7 88 6-124 34-123 (295)
79 3cfz_A UPF0100 protein MJ1186; 98.2 4.6E-06 1.6E-10 64.9 8.5 88 6-124 34-123 (292)
80 2hxw_A Major antigenic peptide 98.1 5.5E-06 1.9E-10 61.9 6.0 83 7-123 30-113 (237)
81 1atg_A MODA, periplasmic molyb 97.9 9.7E-05 3.3E-09 53.9 10.2 97 7-137 29-130 (231)
82 3r26_A Molybdate-binding perip 97.8 0.00013 4.5E-09 55.0 9.6 88 6-123 35-124 (237)
83 3gzg_A Molybdate-binding perip 97.6 0.00042 1.4E-08 53.0 9.8 86 6-123 51-140 (253)
84 3k6v_A Solute-binding protein 90.7 1.3 4.3E-05 35.4 8.4 86 7-123 73-160 (354)
85 3uif_A Sulfonate ABC transport 40.4 1.2E+02 0.004 23.0 7.7 50 80-141 95-147 (348)
86 3kn3_A Putative periplasmic pr 23.1 63 0.0022 24.1 3.1 38 7-49 36-74 (242)
87 3qsl_A Putative exported prote 21.1 2.5E+02 0.0086 20.6 9.1 46 85-140 117-166 (346)
88 3lr1_A Tungstate ABC transport 20.1 88 0.003 23.1 3.4 15 79-93 79-93 (236)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=99.93 E-value=7.3e-26 Score=180.62 Aligned_cols=147 Identities=25% Similarity=0.419 Sum_probs=127.8
Q ss_pred cccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc---CCCceEeeeeeecc
Q 040874 9 GIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR---TRGKIWAAPYRWGA 85 (165)
Q Consensus 9 ~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~---~~g~~y~vP~~~~~ 85 (165)
..+++++++++||+++.. .+||+++++.++.+++++|+|+||+.+.+ +|++++.+.+.. ++|+.|++||.+++
T Consensus 41 ~~~~s~e~~~~kl~ag~~---~~DVv~~~~~~~~~~~~~gll~~ld~~~~-~n~~~~~~~~~~~~~~~~~~y~vp~~~~~ 116 (333)
T 4gl0_A 41 QTFDSNEAMMTKIEQGGT---TFDIAVPSDYAISKMKEENLLIPLDHSKL-PNEKYLDPRFMDLSFDDDNKYSMPYFWGT 116 (333)
T ss_dssp EEESCHHHHHHHHHTCSS---CCSEECCBHHHHHHHHHTTCBCCCCGGGC-GGGGGBCGGGSSCGGGGGGSSEEEEEEEE
T ss_pred EeCCCHHHHHHHHHcCCC---CCeEEEeCHHHHHHHHHcCCccccccccc-cccccCCHHHhhhccCCCCceEeceeeee
Confidence 457888999999998754 69999999999999999999999999886 788888777642 56778999999999
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhhhhhHHhh
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAVQQNLALL 162 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~lk~~v~~~ 162 (165)
++|+||+++|++ .+|+||+|||+|+|+||+++.+.++..+++++.++|.+++...++ +..+... .++++++..|
T Consensus 117 ~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (333)
T 4gl0_A 117 LGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAI 192 (333)
T ss_dssp EEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEEE
T ss_pred eeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhcccccee
Confidence 999999999986 378999999999999999999999999999999999999998886 6666665 7778876554
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=99.91 E-value=2.1e-24 Score=171.64 Aligned_cols=145 Identities=21% Similarity=0.421 Sum_probs=125.8
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc---CCCceEeeeeeecce
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR---TRGKIWAAPYRWGAM 86 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~---~~g~~y~vP~~~~~~ 86 (165)
.+++++++++||+++.. .|||+++++.++.+++++|+|+||+.+.+ ++++++.+.+.. ++|+.|+||+.+++.
T Consensus 40 ~~~~~~~~~~kl~a~~~---~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~~~~g~~y~vP~~~~~~ 115 (330)
T 4eqb_A 40 TFDSNEAMYTKIKQGGT---TYDIAIPSEYMINKMKDEDLLVPLDYSKI-EGIENIGPEFLNQSFDPGNKFSIPYFWGTL 115 (330)
T ss_dssp EESSHHHHHHHHHHCCS---CCSEECCBHHHHHHHHHTTCBCCCCGGGC-CCGGGBCGGGSSCTTSGGGSSCEEEEEEEE
T ss_pred eCCCHHHHHHHHhcCCC---CCCEEEECHHHHHHHHHCCCccCCChhhC-cChhhCCHHHHccCcCCCCeEEEEEecccE
Confidence 35667889999998643 69999999999999999999999998765 678888887763 568899999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhhhhhHHhh
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAVQQNLALL 162 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~lk~~v~~~ 162 (165)
+|+||+++|++ +|+||++|++++++|++++.+.++..++.++...|.+++..++. +.++... .++++++..|
T Consensus 116 ~l~Ynkd~~~~----~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 189 (330)
T 4eqb_A 116 GIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAI 189 (330)
T ss_dssp EEEEEGGGCSS----CCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEEE
T ss_pred EEEEEHHHcCC----CCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhHhhee
Confidence 99999999986 89999999999999999999998999999999999999888875 7777766 7888876544
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=99.88 E-value=2e-23 Score=166.62 Aligned_cols=150 Identities=20% Similarity=0.423 Sum_probs=126.9
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc-----CCCceEeeeeeec
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR-----TRGKIWAAPYRWG 84 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~-----~~g~~y~vP~~~~ 84 (165)
.+++++++.+||+++.. .+||+++++.++.+++++|+|+||+.+.+ ++++++.+.+.. ++|+.|++|+.++
T Consensus 39 ~~~~~~~~~~kl~ag~~---~~Dv~~~~~~~~~~~~~~g~l~~ld~~~~-~~~~~~~~~~~~~~~~~~~g~~y~vP~~~~ 114 (346)
T 3ttm_A 39 VYDSNEVLEAKLLAGKS---GYDVVVPSNSFLAKQIKAGVYQKLDKSKL-PNWKNLNKDLMHTLEVSDPGNEHAIPYMWG 114 (346)
T ss_dssp EESCHHHHHHHHHHSCC---SCSEECCBHHHHHHHHHTTCBCCCCGGGC-GGGGGBCHHHHHHHTTTSGGGCSEEEEEEE
T ss_pred ecCCHHHHHHHHHcCCC---CCcEEEeCHHHHHHHHHCCCcccCChhhC-cChhhcCHHHHhccccCCCCCeEEeEEeec
Confidence 45677888899998643 69999999999999999999999997765 688888887642 4788999999999
Q ss_pred ceEEEEechhccc-CCCC-CCCCHHHhcCcccCCc-----eeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhh
Q 040874 85 AMMIAYKKSKFRK-HDLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAV 155 (165)
Q Consensus 85 ~~~i~YN~~~v~~-~g~~-~p~sw~dL~d~~~kgk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~l 155 (165)
+.+|+||++++++ +|.+ +|+||++|++++++|+ +.+.+.+..+++.++...|.+++..++. +.++... .++
T Consensus 115 ~~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l 194 (346)
T 3ttm_A 115 TIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKI 194 (346)
T ss_dssp EEEEEECHHHHHHHHCTTCCTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEhHHhhhhccCCCCCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999998 7865 8999999999987765 6788888889999999999999888875 7777766 788
Q ss_pred hhhHHhhh
Q 040874 156 QQNLALLQ 163 (165)
Q Consensus 156 k~~v~~~~ 163 (165)
++++..|.
T Consensus 195 ~~~~~~~~ 202 (346)
T 3ttm_A 195 RPYVTYFH 202 (346)
T ss_dssp GGGCCEEC
T ss_pred hHhhheeC
Confidence 88876553
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=99.87 E-value=6.5e-23 Score=163.00 Aligned_cols=149 Identities=21% Similarity=0.383 Sum_probs=125.4
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc-----CCCceEeeeeeec
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR-----TRGKIWAAPYRWG 84 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~-----~~g~~y~vP~~~~ 84 (165)
.+++++++.+||+++.. .+||+++++.++.+++++|+|+||+.+.+ ++++++.+.++. ++|+.|++|+.++
T Consensus 36 ~~~~~~~~~~~l~ag~~---~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~y~vP~~~~ 111 (340)
T 3ttn_A 36 VFDSNETLEGKLVSGHS---GYDIVVPSNNFLGKQIQAGAFQKLDKSKL-PNWKNLDPALLKQLEVSDPGNQYAVPYLWG 111 (340)
T ss_dssp EESSHHHHHHHHHTSCC---CCSEECCBHHHHHHHHHTTCBCCCCGGGC-GGGGGSCHHHHHHHTTTSGGGCSEEEEEEE
T ss_pred ecCCHHHHHHHHHcCCC---CCcEEEECHHHHHHHHHCCCcCcCChhhC-cChhhcCHHHHhcccccCCCCeEEeEEEee
Confidence 35677888899998643 69999999999999999999999997764 688888877642 4788999999999
Q ss_pred ceEEEEechhccc-CCCCCCCCHHHhcCcccCCc-----eeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhhh
Q 040874 85 AMMIAYKKSKFRK-HDLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAVQ 156 (165)
Q Consensus 85 ~~~i~YN~~~v~~-~g~~~p~sw~dL~d~~~kgk-----i~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~lk 156 (165)
+.+|+||++++++ .|.++|+||+||++++++|+ +.+.+.+...++.++...|.+++..++. +.++... .+++
T Consensus 112 ~~~l~Ynkd~~~~a~G~~~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~ 191 (340)
T 3ttn_A 112 TNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVR 191 (340)
T ss_dssp EEEEEEEHHHHHHHHCSCCCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHG
T ss_pred eeEEEEehHHhccccCCCCCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999998 58778999999999988776 5778888889999999999999888875 7777666 7888
Q ss_pred hhHHhh
Q 040874 157 QNLALL 162 (165)
Q Consensus 157 ~~v~~~ 162 (165)
+++..|
T Consensus 192 ~~~~~~ 197 (340)
T 3ttn_A 192 PYVSYF 197 (340)
T ss_dssp GGCCEE
T ss_pred HHhhee
Confidence 877554
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.86 E-value=1.2e-21 Score=155.25 Aligned_cols=144 Identities=23% Similarity=0.385 Sum_probs=119.2
Q ss_pred cCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhccccccccc---CCCceEeeeeeecceE
Q 040874 11 FNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKR---TRGKIWAAPYRWGAMM 87 (165)
Q Consensus 11 ~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~---~~g~~y~vP~~~~~~~ 87 (165)
+++++++.+||+++.. ..+||++.+..++.+++++|+|+||+...+ ++++++.+.+.. ++|+.|++|+.+++.+
T Consensus 36 ~~~~~~~~~kl~a~~~--~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~~~~g~~y~vP~~~~~~~ 112 (325)
T 1pot_A 36 YESNETMYAKLKTYKD--GAYDLVVPSTYYVDKMRKEGMIQKIDKSKL-TNFSNLDPDMLNKPFDPNNDYSIPYIWGATA 112 (325)
T ss_dssp ESCHHHHHHHHTTCSS--SCSSBBCCBGGGHHHHHHHTCBCCCCTTSC-TTGGGBCGGGSCCTTSTTCSSCEEEEEEEEE
T ss_pred cCCHHHHHHHHhcCCC--CCCcEEEECHHHHHHHHHCCCcCCCChhhC-cChhhcCHHHhccCCCCCCcEEeeEeeeeEE
Confidence 4567889999998652 379999998889999999999999998654 677778776652 5788999999999999
Q ss_pred EEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hhhhhhHH
Q 040874 88 IAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VAVQQNLA 160 (165)
Q Consensus 88 i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~lk~~v~ 160 (165)
|+||+++++++ +|+||+||++++++|++++.+.+...++.++...|.++++.++. +.++... .+|++++.
T Consensus 113 l~Ynkd~~~~~---p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~ 184 (325)
T 1pot_A 113 IGVNGDAVDPK---SVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVA 184 (325)
T ss_dssp EEEETTTSCTT---TCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEE
T ss_pred EEEEHHHcCCC---CCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999873 56999999999999999999888788888888999998877664 6666555 67777653
No 6
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.85 E-value=2.9e-21 Score=152.87 Aligned_cols=138 Identities=17% Similarity=0.255 Sum_probs=113.6
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEEech
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKS 93 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~YN~~ 93 (165)
.+.+.+++.++. +.+||++.+..++.+++++|+|+||+.+.+ ++++++.+.+. +.|++|+.+++.+|+||++
T Consensus 43 ~~~l~~~~~~g~---~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~----~~y~vp~~~~~~~l~yn~~ 114 (324)
T 4i1d_A 43 WPAIKTQVGSGK---PIWDVVDTPTGYCLRGGEQGLIEKLDFSKI-PNAAAMPEAYR----SPYSVSYEFYSSVLAYSQK 114 (324)
T ss_dssp HHHHHHHHHTTC---CSCCEEEEEHHHHHHHHHTTCBCCCCGGGC-HHHHTSCGGGB----CSSCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHhCC---CCeEEEECCHHHHHHHHHCCCcccCChhhC-cChhhCCcccc----cCceeeeecceEEEEEehh
Confidence 344555554443 469999999999999999999999997765 67888888764 4699999999999999999
Q ss_pred hcccCCCCCCCCHHHhcCc-ccCCceeeecChHHHHHHHHHHhCCCCCCCCh-HHHhcchh-hhhhhhHHhh
Q 040874 94 KFRKHDLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNI-DSQVAGGK-VAVQQNLALL 162 (165)
Q Consensus 94 ~v~~~g~~~p~sw~dL~d~-~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~-~~~~a~~~-~~lk~~v~~~ 162 (165)
++++ ++|+||+||+++ +|+|++++.+.+...++.++.+.|.++++.++ ++.++... .+|++++..|
T Consensus 115 ~~~~---~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 183 (324)
T 4i1d_A 115 TFPK---DAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPLDVDRAFKKLEEIKPHITVW 183 (324)
T ss_dssp TCSS---CCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHHHGGGCSEE
T ss_pred hcCC---CCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHHHHHHHHHHHHHHhhhhhhh
Confidence 9986 379999999999 99999999998788899999999998877665 36666666 7888887554
No 7
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.82 E-value=3.1e-20 Score=147.08 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=109.8
Q ss_pred HHHHHhhc-CCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEEechhcc
Q 040874 18 FNKVKAKS-ASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAYKKSKFR 96 (165)
Q Consensus 18 ~~kl~a~~-~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~YN~~~v~ 96 (165)
.+||++.. .+++.+||++.++.++.+++++|+|+||+.+.+ +++++.+.++ +.|++|+.+++.+|+||+++++
T Consensus 40 ~~kl~a~~~~g~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~--~~~~~~~~~~----~~y~~p~~~~~~~l~yn~~~~~ 113 (320)
T 4euo_A 40 YGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVI--DKTKLDPRFV----TDYSVGSFYYSFVIGCNVDSVS 113 (320)
T ss_dssp HHHHHHHHHTTCCCCSEEEEEHHHHHHHTTTTCBCCCCTTTS--CGGGBCGGGC----BTTBEEEEEEEEEEEECGGGSS
T ss_pred HHHHHHHHHcCCCCceEEEcCHHHHHHHHHCCCcccCChhhC--ChhhCChhhc----ccceeeeeeeeEEEEEEhhhhC
Confidence 56666542 223469999999999999999999999997753 6788888776 3599999999999999999998
Q ss_pred cCCCCCCCCHHHhcCc-ccCCceeeec-ChHHHHHHHHHHhCCCCCCCCh-HHHhcchh-hhhhhhHHh
Q 040874 97 KHDLAPIEDWKDLWRP-ELAGRISMVN-SPREVIGSVLKYMGASYNSNNI-DSQVAGGK-VAVQQNLAL 161 (165)
Q Consensus 97 ~~g~~~p~sw~dL~d~-~~kgki~~~d-~~~~~~~~al~~~G~~~~~~~~-~~~~a~~~-~~lk~~v~~ 161 (165)
+ +|+||+||+++ +|+|++++.+ .....++.++.+.|.+++..++ ++.++... .+|++++..
T Consensus 114 ~----~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~ 178 (320)
T 4euo_A 114 A----CPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIW 178 (320)
T ss_dssp C----CCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHTTGGGEEE
T ss_pred C----CCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHHHHHHHHHHHHHhhhceeE
Confidence 7 79999999998 5999999998 6667888899999998877665 36666666 788888743
No 8
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.81 E-value=6.8e-20 Score=146.53 Aligned_cols=140 Identities=25% Similarity=0.279 Sum_probs=112.8
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc----cCCCceEeeeeeecceE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK----RTRGKIWAAPYRWGAMM 87 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~----~~~g~~y~vP~~~~~~~ 87 (165)
++++++.+||+++. ..+||++.+..++.+++++|+|+||+...+ ++++++.+.++ .++|+.|++|+.+++.+
T Consensus 58 ~~~~~~~~kl~ag~---~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~~~~~G~~y~vP~~~~~~~ 133 (343)
T 2v84_A 58 ASNEDMFAKLSIGA---SGYDLVVPSGDFVSIMKRKHLLEKIDLSKI-PNVQFIKESVRARIAYDPKMEYSVPYYLGAAG 133 (343)
T ss_dssp SCHHHHHHHHSSSC---CSCSEECCBHHHHHHHHHTTCEECCCGGGC-GGGGGBCHHHHHHCTTSTTCSSCEEEEEECCE
T ss_pred CCHHHHHHHHHcCC---CCCCEEEcCHHHHHHHHHCCCcccCChhhC-cChhhcCHHHhcccccCCCceEEeeeEeccEE
Confidence 45567999999753 369999998888999999999999997543 56777776553 24688999999999999
Q ss_pred EEEechhcccCCCCCCCCHHHhcCcccCCceeeecChHHHHHHHHHHhCCCCCCCChH-HHhcchh-hh-hhhhH
Q 040874 88 IAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNID-SQVAGGK-VA-VQQNL 159 (165)
Q Consensus 88 i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~~-~~~a~~~-~~-lk~~v 159 (165)
|+||++++++ +|+||+||++++++|++++.+.+...++.++...|.+++..++. ..++... .+ |++++
T Consensus 134 l~YNkd~~~~----~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~~l~~~~ 204 (343)
T 2v84_A 134 IAVNKKAVPS----YARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNL 204 (343)
T ss_dssp EEEETTTCCS----CCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHTGGGE
T ss_pred EEEEhHhcCC----CCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999987 79999999999999999998877777888888889888766653 5555444 55 66654
No 9
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.79 E-value=7.2e-20 Score=145.89 Aligned_cols=145 Identities=23% Similarity=0.406 Sum_probs=113.7
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc-----cCCCceEeeeeeecce
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK-----RTRGKIWAAPYRWGAM 86 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~-----~~~g~~y~vP~~~~~~ 86 (165)
++.+++.+||+++. ..+||++.+..++..+++.|+|+||+...+ ++++++.+.+. .++|+.|++|+.+++.
T Consensus 37 ~~~~~~~~kl~a~~---~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~~y~vP~~~~~~ 112 (344)
T 1a99_A 37 DSNEVLEGKLMAGS---TGFDLVVPSASFLERQLTAGVFQPLDKSKL-PEWKNLDPELLKLVAKHDPDNKFAMPYMWATT 112 (344)
T ss_dssp SCHHHHHHHHHHCC---CCCSEECCBHHHHHHHHHTTCBCCCCGGGC-GGGGGBCHHHHHHHHTTSGGGCSEEEEEEEEE
T ss_pred CCHHHHHHHHHcCC---CCCcEEEECHHHHHHHHHCCCcccCChhhC-cChhhcCHHHhhhhhccCCCCcEEeeEEeeeE
Confidence 45567899998743 369999998889999999999999997543 56777776653 2368899999999999
Q ss_pred EEEEechhcccC-CCC-CCCCHHHhcCcccCCcee-----eecChHHHHHHHHHHhCCCCCCCChH-HH-hcchh-hhhh
Q 040874 87 MIAYKKSKFRKH-DLA-PIEDWKDLWRPELAGRIS-----MVNSPREVIGSVLKYMGASYNSNNID-SQ-VAGGK-VAVQ 156 (165)
Q Consensus 87 ~i~YN~~~v~~~-g~~-~p~sw~dL~d~~~kgki~-----~~d~~~~~~~~al~~~G~~~~~~~~~-~~-~a~~~-~~lk 156 (165)
+|+||+++++++ |.+ +|+||+||+++++++|+. +.+.+...+..++.+.|.+++..++. +. ++... .+|+
T Consensus 113 ~l~Ynkd~~~~alGl~~~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~a~~~l~~l~ 192 (344)
T 1a99_A 113 GIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR 192 (344)
T ss_dssp EEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHG
T ss_pred EEEEEhHHcccccccCCCCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999986 765 699999999987777765 55666677777777889888766654 55 56555 6676
Q ss_pred hhHH
Q 040874 157 QNLA 160 (165)
Q Consensus 157 ~~v~ 160 (165)
+++.
T Consensus 193 ~~~~ 196 (344)
T 1a99_A 193 PNIR 196 (344)
T ss_dssp GGCC
T ss_pred ccee
Confidence 6653
No 10
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.78 E-value=6e-19 Score=139.95 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=110.9
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecce
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAM 86 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~ 86 (165)
|.-++.+++++++||+++.. ++.+||++.+..++..++++|+|+||+.+.+ ++++++.+.++... +.|++|+.+++.
T Consensus 37 V~~~~~~~~~~~~kl~~~~~-~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~-~~y~vP~~~~~~ 113 (333)
T 3pu5_A 37 VTLVPGTNPAHALKILSSRG-TPPYDVAAFGGNDMYRLIRAKKLAQVDEKSV-PSLADVPEKFKADW-EGCGSLYDYSSV 113 (333)
T ss_dssp EEEEECCHHHHHHHHHHCCS-SCSCSEEEECHHHHHHHHHTTCBCCCCTTTC-GGGGGSCGGGTGGG-TTSCEECCBEEE
T ss_pred EEEecCCCHHHHHHHHhCcC-CCCCCEEEEChHHHHHHHHCcCcccCChhhC-CChhhCCHHHHhcc-CCccceeEeeee
Confidence 34466788999999999763 4579999999999999999999999998765 68888888876322 459999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCce----eeecChH-----HHHHHHHHHhCCCCCCCChHHHhcchh-hhhh
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRI----SMVNSPR-----EVIGSVLKYMGASYNSNNIDSQVAGGK-VAVQ 156 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki----~~~d~~~-----~~~~~al~~~G~~~~~~~~~~~~a~~~-~~lk 156 (165)
+|+||++++++ +|+||+||++++++|++ ++.+... ..+..++...|.+. +++.++... .+|+
T Consensus 114 ~l~ynkd~~~~----~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~a~~~l~~l~ 185 (333)
T 3pu5_A 114 GIAYRPDKIQG----GVKSWKEFVERTVAGEFGKQVFFNNLSSNVRGAEVLSMFGKIYGSGY----GDIEASIATLERMK 185 (333)
T ss_dssp EEEECTTTSTT----CCSSHHHHHHHHHHTTTTTCEEEECGGGTSSHHHHHHHHHHHHSSST----TCHHHHHHHHHHHG
T ss_pred EEEEchhhcCC----CCCCHHHHhChhhCCCccccccccCCcchhhHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhC
Confidence 99999999986 89999999999999999 9987432 23333444556532 334555555 6777
Q ss_pred hhH
Q 040874 157 QNL 159 (165)
Q Consensus 157 ~~v 159 (165)
+++
T Consensus 186 ~~~ 188 (333)
T 3pu5_A 186 PHI 188 (333)
T ss_dssp GGE
T ss_pred ccc
Confidence 776
No 11
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.78 E-value=2.6e-19 Score=143.88 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=111.9
Q ss_pred chHHHHHHhhc-CCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhc------ccccccccCCCceEeeeeeecceE
Q 040874 15 SLPFNKVKAKS-ASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFK------CLSHKWKRTRGKIWAAPYRWGAMM 87 (165)
Q Consensus 15 ~~~~~kl~a~~-~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~------~i~~~~~~~~g~~y~vP~~~~~~~ 87 (165)
++..+||++.. .+++.+||++..+.++.++++ |+|+||+...+ +++ ++.+.+ |+.|++|+.+++.+
T Consensus 70 ~~~~~kl~~~~~~g~~~~Dv~~~~~~~~~~~~~-g~l~~l~~~~~--~~~~~~~~~~~~~~~----~~~y~~p~~~~~~~ 142 (365)
T 3rpw_A 70 ARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGD-CCLADIDYSKL--SESAHKTLAAMPDNL----KRKKGVALQVIGVG 142 (365)
T ss_dssp SCCHHHHHHHHHHTCCCCSBEEECHHHHHHTHH-HHBCCCCGGGS--CHHHHHHHHTSCGGG----EETTEEEEEEEEEE
T ss_pred CCcHHHHHHHHHcCCCCceEEEcCHHHHHHHhC-CCcccCChhhc--CchhhhhhhhcCccc----cCCeEEeeeeeeEE
Confidence 56777777632 223469999999999999999 99999997643 444 666654 45799999999999
Q ss_pred EEEechhcccCCCCCCCCHHHhcCc-ccCCceeeecChHHHHHHHHHHhCCCCCCCCh-HHHhcchh-hhhhhhHHhh
Q 040874 88 IAYKKSKFRKHDLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNI-DSQVAGGK-VAVQQNLALL 162 (165)
Q Consensus 88 i~YN~~~v~~~g~~~p~sw~dL~d~-~~kgki~~~d~~~~~~~~al~~~G~~~~~~~~-~~~~a~~~-~~lk~~v~~~ 162 (165)
|+||++++++. ++|+||+||+++ +|+|++++.+.+...++.++...|.+++..++ +..++... .+|++++..|
T Consensus 143 l~ynk~~~~~~--~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~ 218 (365)
T 3rpw_A 143 LVYNKDKFKGD--KAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPIDMDRALKKLKEIKPHVVKW 218 (365)
T ss_dssp EEEETTTSCTT--SSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSCCHHHHHHHHHHHGGGEEEE
T ss_pred EEEEhhhcCCC--CCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCchhHHHHHHHHHHHhhhcccc
Confidence 99999999862 379999999999 89999999998788899999999998877766 36666666 7888887544
No 12
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.67 E-value=4.7e-17 Score=129.01 Aligned_cols=143 Identities=18% Similarity=0.263 Sum_probs=107.6
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecce
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAM 86 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~ 86 (165)
|.-+..+.+++.+||+++.. ..+||++.+..++..++++|+++||+.... ++++++.+.+...+|+.|++|+..++.
T Consensus 65 V~~~~~~~~~~~~kl~a~~~--~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~-~~~~~~~~~~~~~~g~~y~~P~~~~~~ 141 (351)
T 4edp_A 65 IVLDIGNNSERLTKMKNNPN--SQIDITYLAESFAEQGVEAGIFDKLDYSKI-PNASEMNEKAKSTVEAGYGPAYTLNSI 141 (351)
T ss_dssp EEEEECCHHHHHHHHHHCTT--CCCCEEEEEHHHHHHHHHHTCBCCCCGGGC-GGGGGBCTTTHHHHHHTSSCEEEEEEE
T ss_pred EEEEeCCcHHHHHHHHhcCC--CCCCEEEECcHHHHHHHHCCCcccCCchhC-CChHHhhHHhhccCCCeeEEEEEeeEE
Confidence 34445677899999997653 379999999889999999999999997654 677788777665568899999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeecChH----HHHHHHHHHhCCCCCCCChHHHhcchh-hhhhhhH
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSPR----EVIGSVLKYMGASYNSNNIDSQVAGGK-VAVQQNL 159 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~~----~~~~~al~~~G~~~~~~~~~~~~a~~~-~~lk~~v 159 (165)
+|+||+++ ++ +|+||+||++++++|++++.+... ..+...+...|.++++ ++..++... .+|++++
T Consensus 142 ~l~ynkd~-~~----~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~l~~~~ 212 (351)
T 4edp_A 142 GIVVDPSA-GI----EINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKT--DNGEAAFKELEALKPNV 212 (351)
T ss_dssp EEEECGGG-CC----CCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHHTCCHHH--HTTHHHHHHHHHHGGGE
T ss_pred EEEEcCCC-CC----CCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhcCCCCCh--hhHHHHHHHHHHHHHhh
Confidence 99999999 43 899999999999999999987422 2333344455776532 223444433 5555554
No 13
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.55 E-value=7.8e-15 Score=116.48 Aligned_cols=99 Identities=18% Similarity=0.323 Sum_probs=79.7
Q ss_pred CCCchHHHHHHhhcCCCCCccEEE-eChHHHHHHHHcCccccc--CCCCCcchhcccccccccCCCceEeeeeeecceEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVS-VGDPWLSFAIEKRLIEPI--AGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~-~~~~~~~~~~~~gll~pl--d~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i 88 (165)
++++++.+||+++..+ ..+||++ .+..++..++++|+|+|| +... ++ +.+.++ +.|++|+.+++.+|
T Consensus 61 ~~~~~~~~kl~~~~~~-~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~~----~~-~~~~~~----~~y~vP~~~~~~~l 130 (330)
T 2qry_A 61 EDGVSLLNRLRMEGKN-SKADVVLGLDNNLLDAASKTGLFAKSGVAADA----VN-VPGGWN----NDTFVPFDYGYFAF 130 (330)
T ss_dssp SCHHHHHHHHHHHGGG-CCCSEEEEEEGGGHHHHHHHTCBCCCCCCGGG----CC-CTTCCC----CSSCEEEEEEEEEE
T ss_pred CCHHHHHHHHHhccCC-CCCCEEEEcChHHHHHHHHCCceecccccccc----cc-CCHHHh----cCeEEEEeccceEE
Confidence 3468899999987532 4799999 456788999999999999 4322 23 444443 35999999999999
Q ss_pred EEechhcccCCCCCCCCHHHhcCcccCCceeeecCh
Q 040874 89 AYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 89 ~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~ 124 (165)
+||++++++ +|+||+||++++++|++++.+..
T Consensus 131 ~YNkd~~~~----~P~Tw~dl~~~~~~g~~~~~~~~ 162 (330)
T 2qry_A 131 VYDKNKLKN----PPQSLKELVESDQNWRVIYQDPR 162 (330)
T ss_dssp EEETTTCSS----CCSSHHHHHHCSSCCCEEEECTT
T ss_pred EEehhhccC----CCCCHHHHHhHHhcCeeEeeCCC
Confidence 999999986 89999999999999999998743
No 14
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.54 E-value=2.1e-14 Score=112.64 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=86.7
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-++.+++++++||+++.. ++.+||++..+ .++..+.++|+|+|++...+ -+++.+.++..+|. .+|+.++
T Consensus 29 ~V~~~~~~~~~~~~kl~a~~~-~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~~---~~~~~~~~~~~~g~--~~~~~~~ 102 (322)
T 3e13_X 29 KVNHTQAKASELIKRLSLEGS-NSPADIFITADISNLTEAKNLGLLSPVSSKYL---EEFIPAHLRDKDKE--WFAITKR 102 (322)
T ss_dssp EEEEEECCHHHHHHHHHHHGG-GCCCCEEEESCHHHHHHHHHTTCEECCCCHHH---HHHSCGGGBCTTSS--CEEEEEE
T ss_pred EEEEEECCcHHHHHHHHHhcc-CCCCCEEEecCcHHHHHHHHCCCcccCChhHh---hhhchhhhCCCCCc--EEEeece
Confidence 344456788999999997654 24799999855 57999999999999986422 13466777655554 3777788
Q ss_pred ceEEEEechh-cccCCCCCCCCHHHhcCcccCCceeeecCh
Q 040874 85 AMMIAYKKSK-FRKHDLAPIEDWKDLWRPELAGRISMVNSP 124 (165)
Q Consensus 85 ~~~i~YN~~~-v~~~g~~~p~sw~dL~d~~~kgki~~~d~~ 124 (165)
+.+|+||+++ +++ ++|+||+||++++++|++++.+..
T Consensus 103 ~~~l~yn~~~~~~~---~~p~tw~dl~~~~~~g~~~~~~~~ 140 (322)
T 3e13_X 103 ARIIAYNKNTNIDI---SKMKNYEDLAKAEFKGEIVMRSAT 140 (322)
T ss_dssp EEEEEEETTSCCCC---TTCCSGGGGGSGGGTTCEECCCTT
T ss_pred eEEEEECCccccCC---CCCCCHHHHhhhhhcCeEeecCCC
Confidence 9999999999 986 378999999999999999998743
No 15
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.53 E-value=1.5e-14 Score=114.49 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=84.6
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-++.+.+++.+||+++.. +..+||++. +..++..++++|+|+||+...+ + +.+.+.++..+|+.|++|+ ++
T Consensus 47 V~~~~~~~~~~~~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~-~--~~~~~~~~~~dG~~y~~p~--~~ 120 (334)
T 2pt1_A 47 VNLIEGKADELLERIKSEGA-NSPADVLLTVDLARLWRAEEDGIFQPVQSEIL-E--TNVPEYLRSPDGMWFGFTK--RA 120 (334)
T ss_dssp EEEEECCHHHHHHHHHHHGG-GCCCCEEEEESHHHHHHHHHTTCBCCCCCHHH-H--HHSCGGGBCTTSSCEEEEE--EE
T ss_pred EEEEeCCcHHHHHHHHhccC-CCCCCEEEecCchHHHHHHhCCceeeCCHhHh-h--ccCchheECCCCcEEeecc--cc
Confidence 33344566889999987643 347999986 5568999999999999986321 1 2455556656889999997 68
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
.+|+||+++++++ +|+||+||++++++|++++.+.
T Consensus 121 ~~l~Ynkd~~~~~---~p~tw~el~~~~~~g~~~~~~~ 155 (334)
T 2pt1_A 121 RVIMYNKGKVKPE---ELSTYEELADPKWKGRVIIRSS 155 (334)
T ss_dssp EEEEEETTTCCGG---GCCCSGGGGSGGGTTCBCCCCT
T ss_pred EEEEEeccccccc---CCCCHHHHhhhhhcCeeEecCC
Confidence 8999999999874 6899999999999999998764
No 16
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.52 E-value=1.6e-14 Score=113.38 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=84.7
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-++.+.+++.+||+++.. +..+||++..+. ++..+++.|+|+||+.. .++++.+.++..+| |++|+.+++
T Consensus 33 V~~~~~~~~~~~~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~g--y~~P~~~~~ 105 (312)
T 1xvx_A 33 VTLRNGGDSELGNQLVQEGS-ASPADVFLTENSPAMVLVDNAKLFAPLDAV----TQAQVAQEYRPEHG--RWTGIAARS 105 (312)
T ss_dssp EEEEECCHHHHHHHHHHHGG-GCCCSEEEESSSHHHHHHHHTTCBCCCCHH----HHHHBCGGGSCSSS--SCEEEEEEE
T ss_pred EEEEECChHHHHHHHHHhhC-CCCCCEEEecchHHHHHHHhCCCcccCChH----HHhhCCHHHCCCCC--eEEEEeccc
Confidence 44455677899999986542 247999999774 78899999999999853 34566666654333 999999999
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeee
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMV 121 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~ 121 (165)
.+|+||+++++++ .+|+||+||++++++|++++.
T Consensus 106 ~~l~ynk~~~~~~--~~P~tw~dl~~~~~~g~~~~~ 139 (312)
T 1xvx_A 106 TVFVYNPEKISEA--ELPKSIMDLAKPEWKGRWAAS 139 (312)
T ss_dssp EEEEECTTTSCGG--GSCSSGGGGGSGGGTTSEEEC
T ss_pred eEEEEEhhhcccc--CCCCCHHHHhCHHhcCCEeeC
Confidence 9999999999864 268999999999999999986
No 17
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.48 E-value=8.2e-14 Score=109.57 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=80.4
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeC-hHHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVG-DPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~-~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~Y 90 (165)
.+.+++.+||+++.. +..+||++.. ..++..++++|+|+||+...+ + +.+.+.++..+|+.|++| +++.+|+|
T Consensus 34 ~~~~~~~~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~-~--~~~~~~~~~~~G~~~~~~--~~~~~l~y 107 (320)
T 1q35_A 34 FADKGLVDRVKQEGE-LSPADVLLTVDISRVMEIVNADLAQKIDSKVL-E--KNIPAQFRDSNDQWFGLT--TRARVIYT 107 (320)
T ss_dssp ECC-CCHHHHHHHGG-GCCCCEEEESCHHHHHHHHHTTCBCCCCCHHH-H--HHSCGGGBCTTSSCEEEE--EEEEEEEE
T ss_pred eCcHHHHHHHHhccC-CCCCCEEEecChHHHHHHHHCCCcccCChhhh-h--ccCchheECCCCeEEeee--cceEEEEE
Confidence 567889999987642 3479999974 468899999999999986321 1 345555655677778776 46889999
Q ss_pred echhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
|+++++++ ++|+||+||++++++|++++.+.
T Consensus 108 nkd~~~~~--~~P~tw~el~~~~~~g~~~~~~~ 138 (320)
T 1q35_A 108 SKDRVGKL--PAGFDYLDLAKPEYKGKVCVRSG 138 (320)
T ss_dssp ETTTTCSC--CTTCCGGGGGSGGGTTCEECSCT
T ss_pred ehHHhhhc--CCCCCHHHHhhHHhCCcEEeccC
Confidence 99999864 37899999999999999998764
No 18
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.48 E-value=6.7e-14 Score=109.56 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=83.0
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccc--cCCCceEeeeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK--RTRGKIWAAPYRW 83 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~--~~~g~~y~vP~~~ 83 (165)
|.-++.+++++.+||+++.. +..+||++..+ .++..++++|+|+||+.. .++++.+.+. ..+| |++|+..
T Consensus 28 V~~~~~~~~~~~~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~~g--~~~P~~~ 100 (309)
T 1nnf_A 28 VTLNSGKSEQLAGQLKEEGD-KTPADVFYTEQTATFADLSEAGLLAPISEQ----TIQQTAQKGVPLAPKK--DWIALSG 100 (309)
T ss_dssp EEEEECCHHHHHHHHHHHGG-GCCCSEEEESCGGGHHHHHHTTCBCCCCHH----HHHTTCCTTCCCCTTS--CCEEEEE
T ss_pred EEEEeCChHHHHHHHHHhcC-CCCCCEEEecchhHHHHHHHCCCcccCCHH----HhhhcchhhcccCCCC--eEEEeee
Confidence 33345677899999986432 13799999986 588999999999999852 2334444443 2344 7899999
Q ss_pred cceEEEEechhcccCCCCCCCCHHHhcCcccCCceeeec
Q 040874 84 GAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVN 122 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d 122 (165)
++.+|+||+++++++ .+|+||+||++++++|++++.+
T Consensus 101 ~~~~l~YNk~~~~~~--~~P~tw~dl~~~~~~g~~~~~~ 137 (309)
T 1nnf_A 101 RSRVVVYDHTKLSEK--DMEKSVLDYATPKWKGKIGYVS 137 (309)
T ss_dssp EEEEEEEETTTCCGG--GSCSSGGGGGSGGGTTTEEECT
T ss_pred eEEEEEEehhhcccc--CCCCCHHHHhchhhcCeEeecC
Confidence 999999999999863 3789999999999999999875
No 19
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.46 E-value=1.3e-13 Score=110.46 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=82.6
Q ss_pred cccccCCCchHHHHHHhhcC-CCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 7 IDGIFNNLSLPFNKVKAKSA-SYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~-~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
|.-+..+.+++++||+++.. +++.+||++.++. ++..+.++|+|+||+.. +.+++.+.++ .+|+.| |+.++
T Consensus 63 V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~-~~~~~~--~~~~~ 135 (355)
T 3c9h_A 63 VHYEDMLTGEIYDRIVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLA----MSARWPAWAN-WRNTAY--ALTFE 135 (355)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCBCSEEEESCHHHHHHHHHTTCEECCCCT----TTTTSCGGGE-ETTTEE--ECBCE
T ss_pred EEEEeCChHHHHHHHHHHHhcCCCCCCEEEecchHHHHHHHhCCCcccCCCh----hhhhCcchhe-eCCeEE--EEecC
Confidence 33334466889999987653 2357999999874 57789999999999863 2344555444 345544 67788
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhcC------cccCCceeeecChH
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLWR------PELAGRISMVNSPR 125 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~d------~~~kgki~~~d~~~ 125 (165)
+.+|+||++++++. ++|+||+||++ ++|+|++++.+...
T Consensus 136 ~~~l~YNk~~~~~~--~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~ 180 (355)
T 3c9h_A 136 PAVFVYHKPSFTTE--KPPATRAEFVDYLERHAKEVHGRIATYDIER 180 (355)
T ss_dssp EEEEEEEGGGCSSS--CCCCSHHHHHHHHHHTHHHHTTCEEEECTTC
T ss_pred cEEEEEEHHhcCCC--CCCCCHHHHHHHHHhcchhhCCceeecCccc
Confidence 99999999999863 47999999998 89999999987543
No 20
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.45 E-value=2.7e-14 Score=116.23 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=92.6
Q ss_pred ccCCCchHHHHHHhhcCCCC-CccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecc
Q 040874 10 IFNNLSLPFNKVKAKSASYM-AADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGA 85 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~-~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~ 85 (165)
++.+.++..+||++...++. .|||++.+..++..+++.|+|+||+......+.+++.+.+. ..+|+.|++|+.+++
T Consensus 63 ~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~~~ 142 (412)
T 3k01_A 63 VNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAPLDGTPALDDGSDHLPQAAASTRYEGKTYAVPQVIDT 142 (412)
T ss_dssp EECCHHHHHHHHHHHHHTTSSCCSEEEEEHHHHHHHHHTTCBCCCTTSGGGCSCTTBCHHHHHTTEETTEECCEEEEEEE
T ss_pred EecChHHHHHHHHHHHhcCCCCCCEEEecCccHHHHHhcCCcccCchhccccchhhcCHHHHHhcccCCcEEEeeeecce
Confidence 33466788999987654444 69999998888999999999999987311123445544432 257999999999999
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCc--ccC---Cceeeec--ChHHHHHHHHHHhCCCC
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRP--ELA---GRISMVN--SPREVIGSVLKYMGASY 139 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~--~~k---gki~~~d--~~~~~~~~al~~~G~~~ 139 (165)
.+|+||+++++++|.++|+||++|++. +++ |...+.. .....+...+...|.+.
T Consensus 143 ~~l~ynkdl~~~~Gl~~P~Twdel~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~ 203 (412)
T 3k01_A 143 LALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEGGDL 203 (412)
T ss_dssp CEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHSCEEEECCCSCGGGGHHHHHHTTCCS
T ss_pred eEEEEEHHHHHHcCCCCCCCHHHHHHHHHHHhcccCCCceeeCCcchHHHHHHHHHcCCce
Confidence 999999999998888899999999874 343 5554221 11223333445567654
No 21
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.44 E-value=1.3e-13 Score=109.47 Aligned_cols=104 Identities=15% Similarity=0.252 Sum_probs=81.8
Q ss_pred cCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEE
Q 040874 11 FNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIA 89 (165)
Q Consensus 11 ~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~ 89 (165)
+.+++++.+||+++.. +..+||++..+ .++..+++.|+|+||+...+ + +.+.+.++..+|+. +|+.+++.+|+
T Consensus 61 ~~~~~~~~~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~-~--~~~~~~~~~~~G~~--~p~~~~~~~l~ 134 (346)
T 2voz_A 61 EASAEELIERIQSEGA-NSPGDILFTVDAGMLWRAEQAGLFQPVRSGKL-N--ERIPENLRHPDGLW--YGFTQRARVLY 134 (346)
T ss_dssp ECCHHHHHHHHHHTGG-GCCCSEEEEESHHHHHHHHHTTCBCCCCCHHH-H--HHSCGGGBCTTSSC--EEEEEEEEEEE
T ss_pred eCCcHHHHHHHHHhcC-CCCCCEEEecCHHHHHHHHhCCCeeecCchhh-h--hcCCHhhCCCCCcE--EeeeccceEEE
Confidence 3567899999998753 24799999854 68899999999999986321 1 24555565456654 58888999999
Q ss_pred EechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 90 YKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 90 YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
||++++++. +|+||+||++++++|++++.+.
T Consensus 135 YNkd~~~~~---~P~tw~dl~~~~~~g~~~~~~~ 165 (346)
T 2voz_A 135 YSRDRVNPA---DLSTYEALADPQWRGKILVRPS 165 (346)
T ss_dssp EETTTCCGG---GCCCSGGGGSGGGTTTEECCCT
T ss_pred EehhhcCcc---CCCCHHHHhhHHhcCcEEecCC
Confidence 999999873 7899999999999999998764
No 22
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.44 E-value=1.6e-13 Score=110.64 Aligned_cols=103 Identities=18% Similarity=0.316 Sum_probs=78.4
Q ss_pred ccccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchh-cccccccc---cCCCceEee
Q 040874 4 CASIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWF-KCLSHKWK---RTRGKIWAA 79 (165)
Q Consensus 4 ~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~-~~i~~~~~---~~~g~~y~v 79 (165)
||.|.-.+...+++.+||++...++..|||+.....++..+++.|+|+||+.... +.+ +++.+... ..+|+.|++
T Consensus 33 ~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~~~~~~~~~~~g~l~~L~~~~~-~~~~~~~~~~~~~~~~~dGk~ygv 111 (381)
T 1elj_A 33 CPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPIDEYVT-EDLLNEFAPMAQDAMQYKGHYYAL 111 (381)
T ss_dssp CTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCCTTTCC-HHHHTTBCHHHHHHTEETTEECEE
T ss_pred CCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeCCccHHHHHHCCCeecChhhhh-hhhhhhhcHHHHHHeEECCEEEEe
Confidence 5554443333338899999876555579999988888899999999999986432 223 34444322 257999999
Q ss_pred eeeecceEEEEechhcccCCCCCCCCHHHhcC
Q 040874 80 PYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWR 111 (165)
Q Consensus 80 P~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d 111 (165)
|+.+++.+|+||+++|++ +|+||++|++
T Consensus 112 P~~~~~~~l~YNkdlf~~----~P~Twdel~~ 139 (381)
T 1elj_A 112 PFAAETVAIIYNKEMVSE----PPKTFDEMKA 139 (381)
T ss_dssp EEEEEECEEEEETTTCSS----CCSSHHHHHH
T ss_pred ccccceeEEEEehHhhcc----CcccHHHHHH
Confidence 999999999999999997 8999999985
No 23
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.42 E-value=3.3e-13 Score=108.88 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=83.0
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecce
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAM 86 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~ 86 (165)
++-+.+++.+||++...++..|||++.+..++..+++.|+|+||+... ..+++.+.+. ..+|+.|++|+.+++.
T Consensus 35 ~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~~~~---~~~~~~~~~~~~~~~dG~~y~vP~~~~~~ 111 (382)
T 2gha_A 35 QYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFS---DLKNFYETALNAFSYGGKLYGIPYAMEAI 111 (382)
T ss_dssp EECCHHHHHHHHHHHGGGTCSCSEEEEEGGGHHHHHHTTCBCCCCCCT---TGGGBCHHHHHHTEETTEECCEEEEEECC
T ss_pred EecChHHHHHHHHHHhhCCCCCCEEEeCcccHHHHHhCCCcccCCchh---hhhhcCHHHHHhcEECCEEEEEeeeccce
Confidence 334567888999886544457999999888899999999999998642 2455554432 2578999999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcC--cccC-----Cceeeec
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWR--PELA-----GRISMVN 122 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d--~~~k-----gki~~~d 122 (165)
+|+||+++|++ +|+||++|++ .+++ |+..+..
T Consensus 112 ~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~g~~~~~~ 150 (382)
T 2gha_A 112 ALIYNKDYVPE----PPKTMDELIEIAKQIDEEFGGEVRGFIT 150 (382)
T ss_dssp EEEEETTTCSS----CCSBHHHHHHHHHHHHHHTTTSSEEEEC
T ss_pred EEEEehhhccC----CchhHHHHHHHHHHHhccCCCCeeeEEe
Confidence 99999999987 8999999987 4554 7776654
No 24
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.42 E-value=2.7e-13 Score=110.13 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=80.0
Q ss_pred ccccccccCCCchHHHHHHhhcCCCCCccEEEe-Ch-HHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEe
Q 040874 4 CASIDGIFNNLSLPFNKVKAKSASYMAADLVSV-GD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWA 78 (165)
Q Consensus 4 ~~~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~-~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~ 78 (165)
||.|.-.+...++..+||++...++..|||++. +. .++..+++.|+|+||+.. ++.+++.+.+. ..+|+.|+
T Consensus 45 ~p~i~V~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~~g~l~~L~~~---~~~~~~~~~~~~~~~~dG~~y~ 121 (401)
T 2heu_A 45 NPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNK---DYLKRVKNGYAEKYAVNEKVYN 121 (401)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHHTTCCCSEEECCTTSHHHHHHHHTTCBCCCTTC---GGGGGBCTTTGGGGCBTTBCCC
T ss_pred CcCeEEEEEeCCcHHHHHHHHHhcCCCCCEEEecCCcchHHHHHhCCCeecCCch---HHHhhccHhhhhheeeCCEEEE
Confidence 344443333334456676655433347999999 74 688899999999999863 23455554432 25789999
Q ss_pred eeeeecceEEEEechhcccCCCCCCCCHHHhcC--cccC
Q 040874 79 APYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWR--PELA 115 (165)
Q Consensus 79 vP~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d--~~~k 115 (165)
+|+..++.+|+||+++++++|.++|+||++|++ .+++
T Consensus 122 vP~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~ 160 (401)
T 2heu_A 122 VPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIV 160 (401)
T ss_dssp EECBBCCEEEEEEHHHHHHHTCCCCCSHHHHHHHHHHHH
T ss_pred EecccCceEEEEeHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999888999999987 3554
No 25
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.41 E-value=1.6e-13 Score=111.66 Aligned_cols=108 Identities=11% Similarity=0.179 Sum_probs=85.3
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i 88 (165)
.+.+++.+||++...++..|||++.+..++..+++.|+|+||+.. ++.+++.+... ..+|+.|++|+..++.+|
T Consensus 65 ~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~---~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~l 141 (414)
T 3quf_A 65 QDPAQYISTLQTRLAGGKPPTIFNLTMDNRTDVMKSGAALDISGE---DFLDGIDDTNFALFQQDGKTYGMPVSAWVGAF 141 (414)
T ss_dssp SSHHHHHHHHHHHHHSSSCCSEEEECTTTHHHHHHHTCBCCCTTC---GGGTTBCGGGGGGGEETTEECCBCCEEEEEEE
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEECCcchHHHHhCCeeecCCcc---hhhhhcCHHHHhhcccCCeEEEeccccceeEE
Confidence 355888999987654445899999998889999999999999863 24455554432 257899999999999999
Q ss_pred EEechhcccCCCC-CCCCHHHhcCc--cc--CCceeeec
Q 040874 89 AYKKSKFRKHDLA-PIEDWKDLWRP--EL--AGRISMVN 122 (165)
Q Consensus 89 ~YN~~~v~~~g~~-~p~sw~dL~d~--~~--kgki~~~d 122 (165)
+||+++++++|.+ +|+||++|++. ++ +|...+..
T Consensus 142 ~ynkdl~~~~G~~~~P~Twdel~~~~~~l~~~g~~~~~~ 180 (414)
T 3quf_A 142 FYNKDILKKAGYDKFPKTWDEFIEMGKKINSNGSTAFLE 180 (414)
T ss_dssp EEEHHHHHHTTCSSCCSBHHHHHHHHHHHHHTTSEEECC
T ss_pred EEeHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCCeec
Confidence 9999999999977 89999999864 33 36665543
No 26
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=99.38 E-value=5e-13 Score=108.22 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=82.9
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRW 83 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~ 83 (165)
|.-++-+.+++.+||++...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+..
T Consensus 51 V~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dG~~y~~P~~~ 128 (397)
T 2zyo_A 51 VEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKGLLQPIQVDN--SVKNQFDDVAMKALTYGGKLYGLPKAI 128 (397)
T ss_dssp EEEEECCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCEECCCCCH--HHHTTBCHHHHHHTEETTEECEEEEEE
T ss_pred EEEEecchHhHHHHHHHHhhcCCCCcEEEeCchhHHHHHhCCCcccCCchh--hhHhhcChHhHhheEECCEEEEecccc
Confidence 333344667888898875433347999999888899999999999999631 23455544332 2578999999999
Q ss_pred cceEEEEechhcccCCCCCCCCHHHhcC--cccC----Cceeee
Q 040874 84 GAMMIAYKKSKFRKHDLAPIEDWKDLWR--PELA----GRISMV 121 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~~p~sw~dL~d--~~~k----gki~~~ 121 (165)
++.+|+||+++|++ +|+||++|++ .+++ |+..+.
T Consensus 129 ~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~g~~~~~ 168 (397)
T 2zyo_A 129 ESVALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQKYGVL 168 (397)
T ss_dssp ECCEEEEETTTCSS----CCSBHHHHHHHHHHHCBGGGTBEEEE
T ss_pred cceEEEEehhhhcC----CCCCHHHHHHHHHHHhcCCCCeeeEE
Confidence 99999999999997 8999999987 4665 666554
No 27
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.38 E-value=1.4e-12 Score=102.59 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcchhc-ccccccccCCCceEeeeeeecceEEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDWFK-CLSHKWKRTRGKIWAAPYRWGAMMIA 89 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~~~-~i~~~~~~~~g~~y~vP~~~~~~~i~ 89 (165)
.+.+++.+||+++..+ ..+||++. +..++..+++.|+|+||+... ++ .+.+.++..+| |++|+.+++.+|+
T Consensus 38 ~~~~~~~~kl~~~~~~-~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~----~~~~~~~~~~~~~g--~~~p~~~~~~~l~ 110 (323)
T 1y9u_A 38 FVKDGLLERVRAEGDK-SPADVLMTVDIGNLIDLVNGGVTQKIQSQT----LDSVVPANLRGAEG--SWYALSLRDRVLY 110 (323)
T ss_dssp ECSSCHHHHHHHHGGG-CCCCEEEEESHHHHHHHHHTTCEECCCCHH----HHHHSCGGGBCGGG--SCEEEEEEEEEEE
T ss_pred eCcHHHHHHHHHhcCC-CCCCEEEecChHHHHHHHHCCCeeeCChhh----hhhhccHhhCCCCC--eEEEEecceeEEE
Confidence 6678899999976432 47999987 557888999999999998632 22 34444553344 8999999999999
Q ss_pred Eech-hcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 90 YKKS-KFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 90 YN~~-~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
||++ ++++ | ||+||++++++|++++.+.
T Consensus 111 yNkd~~~~~-----P-tw~dl~~~~~~g~~~~~~~ 139 (323)
T 1y9u_A 111 VEKDLKLDS-----F-RYGDLADPKWKGKVCIRSG 139 (323)
T ss_dssp EETTCCCCC-----C-BGGGGGCGGGTTCEECCCT
T ss_pred EcCccccCC-----C-CHHHHhhHHhCCcEeecCC
Confidence 9999 9975 6 9999999999999998753
No 28
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.38 E-value=2.3e-13 Score=110.59 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=79.4
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCc-ccccCCCCCcchhcccccccc---cCCCceEeeeeeecc
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRL-IEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGA 85 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gl-l~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~ 85 (165)
++.+.++..+||++...++..|||+..+..++..+++.|+ |.||+...-..+.+++.+... ..+|+.|++|+..++
T Consensus 41 ~~~~~~~~~~kl~~~~~~g~~PDv~~~~~~~~~~~~~~g~~l~~L~~~~~~~~~~~~~~~~~~~~~~dGk~y~vP~~~~~ 120 (408)
T 2uvj_A 41 EYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYNLFSVKEQLDLAQFDPKELQQTTVNGKLNGIPISVTA 120 (408)
T ss_dssp EEECSTTHHHHHHHHHHHTCCCSEEEECGGGHHHHCTTSCSBCCGGGGTTTSCGGGSCHHHHHTTEETTEECCEEEEEEE
T ss_pred EeCCHHHHHHHHHHHHhCCCCCcEEEechHHHHHHHhCCCceecchhhccccccccCCHHHHhccEECCEEEEeeccccc
Confidence 3445678888988754333479999999889999999995 999985311013445544332 257899999999999
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
.+|+||+++++++|.++|+||++|.+.
T Consensus 121 ~~l~YNkdl~~~aGl~~P~Twdel~~~ 147 (408)
T 2uvj_A 121 RIFYFNDATWAKAGLEYPKTWDELLAA 147 (408)
T ss_dssp EEEEEEHHHHHHHTCCCCSSHHHHHHH
T ss_pred eEEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 999999999999998889999999864
No 29
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.36 E-value=1.1e-13 Score=114.63 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=80.6
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCC---cchhcccccccc---cCCCceEeeeeee
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGED---QDWFKCLSHKWK---RTRGKIWAAPYRW 83 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~---~~~~~~i~~~~~---~~~g~~y~vP~~~ 83 (165)
+..+.++..+||++...++..+||++.+..++..+++.|+|+||+.... ..+.+++.+.+. ..+|+.|++|+.+
T Consensus 63 ~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~ 142 (458)
T 3uor_A 63 QNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVWDTNLVDGTLYGVPWYV 142 (458)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCSEEEEETTTHHHHHHTTCBCCCHHHHHTCSSCCGGGBCHHHHHTTEETTEECCEEEEE
T ss_pred EEcChHHHHHHHHHHHhCCCCCCEEEECcHhHHHHHHCCCccCCchhhhcccccCHHHhCHHHHhheEECCEEEEecccC
Confidence 3345678899999875444589999998888999999999999985310 003444544432 2578999999999
Q ss_pred cceEEEEechhcccCCC-CCCCCHHHhcCc
Q 040874 84 GAMMIAYKKSKFRKHDL-APIEDWKDLWRP 112 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~-~~p~sw~dL~d~ 112 (165)
++.+|+||+++++++|. ++|+||++|++.
T Consensus 143 ~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~ 172 (458)
T 3uor_A 143 DTRLLFYRKDLLREAGYSQMPKTWAEMEQV 172 (458)
T ss_dssp ECCEEEEEHHHHHHTTCSSCCCBHHHHHHH
T ss_pred cccEEEEeHHHHHHcCCCCCCCCHHHHHHH
Confidence 99999999999999987 789999999864
No 30
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=9.3e-13 Score=107.49 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=76.1
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||.+...++..|||++.+..++..+++.|+|+||+... .+.+++.+.+. ..+|+.|++|+.+++.+|+||++++
T Consensus 45 ~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~l~Ynkdl~ 122 (421)
T 1mh3_A 45 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 122 (421)
T ss_dssp HHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHhhCCCCCCEEEeChHhHHHHHhCCCeecCCcch--hhHhhccHHhHhhEEECCeEEEeeeeccceEEEEehhhc
Confidence 777765544457999999888999999999999998641 23445544332 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 123 ~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (421)
T 1mh3_A 123 PN----PPKTWEEIPALDKELKAKGKSALM 148 (421)
T ss_dssp SS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred cC----CCCCHHHHHHHHHHHhcCCCCcee
Confidence 97 8999999987 4565 776654
No 31
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=99.36 E-value=3e-12 Score=104.39 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=83.5
Q ss_pred ccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeec
Q 040874 8 DGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWG 84 (165)
Q Consensus 8 ~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~ 84 (165)
.-+.-+.++..+||++...++..+||++.+..++..++..|+++||+... ...+++.+... ..+|+.|+||+..+
T Consensus 72 ~~~~~~~~~~~~kl~~~~~sg~~PDv~~~~~~~~~~~~~~g~l~~l~~~~--~~~~~~~~~~~~~~~~dGk~y~vP~~~~ 149 (420)
T 4hs7_A 72 KLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKLSK--DELKGFNKQALKAMNYDNKQLALPAIVE 149 (420)
T ss_dssp EEEECCTTTHHHHHHHHTTTTCCCSEEEEEGGGHHHHHHTTCEECCCCCH--HHHTTBCHHHHHHTEETTEECEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCcEEEeCchHHHHHHHcCCccccccCH--HhHhhcCHHHHHhCeECCEEEEEecccc
Confidence 33445678899999987655567999999888999999999999998643 23444444322 25799999999999
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhcCc------ccCCceeeec
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLWRP------ELAGRISMVN 122 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~d~------~~kgki~~~d 122 (165)
+.+|+||+++|++ +|+||++|.+. +-++..++..
T Consensus 150 ~~~l~Ynkdl~~~----~p~Twdel~~~~~~~~~~~~~~~g~~~ 189 (420)
T 4hs7_A 150 TTALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQYGMLF 189 (420)
T ss_dssp CCEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBEEEEC
T ss_pred ceEEEEEcccccc----ccccchhhHHHHHHHHhccCCceeecc
Confidence 9999999999987 89999999742 2345555544
No 32
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.34 E-value=7.7e-13 Score=109.31 Aligned_cols=106 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeC-hHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVG-DPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYR 82 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~-~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~ 82 (165)
|.-++.+.+++.+||++...++..|||+.+. ..++..+++.|+|.||+...-.....++.+... ..+|++|+||+.
T Consensus 96 V~~~~~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~dGk~Y~~P~~ 175 (456)
T 4g68_A 96 IVESVTENDAYKTKIKAAIAANEAPDIFQTWAGGFSQPFVEAGKVLQLDSYLNDGTKDQLLPGSFDNVTYNGKIYGIPFD 175 (456)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTCCCSEEEEETTTTTHHHHHTTCBCCCGGGSSSSGGGGBCTTTTGGGEETTEECCEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEcCchHHHHHHHcCCcccchhhhccchHhhhCHHHHHhcEECCEEEEEEee
Confidence 3334556788899998765445579999874 456677999999999985321112333433322 257999999999
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
.++.+|+||+++|+++|.++|+||++|.+.
T Consensus 176 ~~~~~l~Ynkdl~~~aG~~~P~Twde~~~~ 205 (456)
T 4g68_A 176 QQASVLYINKELFDKYNVKVPTTFSELIDA 205 (456)
T ss_dssp EEEEEEEEEHHHHHHHTCCCCCBHHHHHHH
T ss_pred ccceeeeccHHHHhhcCCcccCCHHHHHHH
Confidence 999999999999999998899999999863
No 33
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=99.34 E-value=1.3e-12 Score=105.40 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=83.3
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcch-hcccccccc---cCCCceEeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDW-FKCLSHKWK---RTRGKIWAAPY 81 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~-~~~i~~~~~---~~~g~~y~vP~ 81 (165)
|.-++-+.++..+||++...++..|||++. +..++..+++.|+|+||+.... ++ .+++.+... ..+|+.|++|+
T Consensus 32 V~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~~-~~~~~~~~~~~~~~~~~dG~~y~vP~ 110 (386)
T 2gh9_A 32 VEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVT-QAYLADLQGVAVEAFTFGGRLMGLPA 110 (386)
T ss_dssp EEEEECCHHHHHHHHHHHGGGTCSCSEEEEEEGGGHHHHHHTTCBCCCGGGSC-HHHHHHBCHHHHHHTEETTEECSEEE
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCCcEEEecCcchHHHHHhCCceecCchhhc-hhhHhhccHhhHhhEEECCEEEEecc
Confidence 333444567888999986544457999988 7778899999999999986431 11 344444332 25789999999
Q ss_pred eecceEEEEechhcccCCCCCCCCHHHhcCc--ccC--Cceeeec
Q 040874 82 RWGAMMIAYKKSKFRKHDLAPIEDWKDLWRP--ELA--GRISMVN 122 (165)
Q Consensus 82 ~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~--~~k--gki~~~d 122 (165)
..++.+|+||++++++ +|+||++|++. +++ |+..+..
T Consensus 111 ~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~ 151 (386)
T 2gh9_A 111 FAESVALIYNKKYVKE----PPRTWEEFLALAQKLTTGATFGFLY 151 (386)
T ss_dssp EEECCEEEEETTTCSS----CCSSHHHHHHHHHHHCSSSCEEEEC
T ss_pred ccceeEEEEehhhhcc----CCCCHHHHHHHHHHhhhCCEEEEEe
Confidence 9999999999999987 89999999875 454 7666643
No 34
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=99.33 E-value=2.1e-12 Score=106.96 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=76.6
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||++...++..|||++.+..++..+++.|+|+||+... .+.+++.+.+. ..+|+.|++|+.+++.+|+||+++|
T Consensus 43 ~kl~~~~asg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~y~vP~~~~~~~l~YNkdl~ 120 (461)
T 3csg_A 43 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 120 (461)
T ss_dssp HHHHHHHTTTCSCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHTTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHhcCCCCCcEEEECchhHHHHHHCCCcccCCccH--HHHhhccHHhHhheEECCEEEEeeccccceEEEEEhhhh
Confidence 777765544457999999888899999999999998641 23445544332 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeeec
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMVN 122 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~d 122 (165)
++ +|+||++|++ .+++ |+..+..
T Consensus 121 ~~----~P~Twdel~~~~~~l~~~g~~~~~~ 147 (461)
T 3csg_A 121 PN----PPKTWEEIPALDKELKAKGKSALMF 147 (461)
T ss_dssp SS----CCSBGGGHHHHHHHHHTTTCEEECC
T ss_pred cc----CCcCHHHHHHHHHHHhhCCCceeEe
Confidence 97 8999999987 4665 7766643
No 35
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=99.33 E-value=1.2e-12 Score=106.21 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=76.9
Q ss_pred CCCc-hHHHHHHhhcCCCCCccEEE-eChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecce
Q 040874 12 NNLS-LPFNKVKAKSASYMAADLVS-VGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAM 86 (165)
Q Consensus 12 ~~~~-~~~~kl~a~~~~~~~~Dv~~-~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~ 86 (165)
-+.+ ++.+||++...++..|||++ .+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+..++.
T Consensus 66 ~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~ 143 (402)
T 1urs_A 66 QSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPVPSGV--LNTGLYAPNTIDAIKVNGTMYSVPVSVQVA 143 (402)
T ss_dssp CTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCCCTTS--CCGGGSCHHHHHTTEETTEECSEEEEEEEC
T ss_pred cCCcccHHHHHHHHhhCCCCCcEEEecChhhHHHHHHCCCeecCCcch--hhhhhcCHHhHhheEECCEEEEecccCccc
Confidence 3444 66777776543334699999 8888899999999999997521 22344544322 2578999999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCcccCCceeeec
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVN 122 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d 122 (165)
+|+||+++|++ +|+||++|++ + +|+..+..
T Consensus 144 ~l~YNkdl~~~----~P~Twdel~~-~-~g~~g~~~ 173 (402)
T 1urs_A 144 AIYYNKKLVPQ----PPQTWAEFVK-D-ANAHGFMY 173 (402)
T ss_dssp EEEEETTTCSS----CCCSHHHHHH-H-HHHHCEEC
T ss_pred EEEEehhhhcc----CCCCHHHHHh-c-cCcceeee
Confidence 99999999997 8999999998 5 66655543
No 36
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=99.33 E-value=1.2e-12 Score=106.80 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=80.0
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeee
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYR 82 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~ 82 (165)
.|.-++.+.++..+||++...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+.
T Consensus 70 ~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dG~~y~vP~~ 147 (420)
T 4hw8_A 70 KVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKLSK--DELKGFNKQALKAMNYDNKQLALPAI 147 (420)
T ss_dssp EEEEEECCTTTHHHHHHHHGGGTCSCSEEEEEGGGHHHHHHTTCEECCCCCH--HHHTTBCHHHHHHTEETTEECEEEEE
T ss_pred EEEEEecCchhHHHHHHHHHhcCCCCCEEEECcchHHHHHhcCCcccCCcch--hhhhhcCHHHHHheEECCEEEEeeee
Confidence 3444445667889999987644557999999988999999999999999642 24455554432 257899999999
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
+++.+|+||+++|++ .|+||++|++.
T Consensus 148 ~~~~~l~Ynkdl~~~----~P~Twdel~~~ 173 (420)
T 4hw8_A 148 VETTALFYNKKLVKN----APQTLEEVEAN 173 (420)
T ss_dssp EECCEEEEETTTCCS----CCCBHHHHHHH
T ss_pred ccceEEEEEhhhhhh----CCCCHHHHHHH
Confidence 999999999999998 59999999864
No 37
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.33 E-value=4.9e-13 Score=108.99 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=75.3
Q ss_pred hHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEec
Q 040874 16 LPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKK 92 (165)
Q Consensus 16 ~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~ 92 (165)
++.+||++...++..|||++....++..+++.|+|+||+.. +....+++.+... ..+|+.|+||+..++.+|+||+
T Consensus 60 ~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~~~~~~~~~~~~~~~~G~~y~vP~~~~~~~l~Ynk 138 (412)
T 2z8f_A 60 DMIKKLETDVKSGEAPDLAQVGYAELPEVFTKGLLQDVTQY-AEQYKNDFASGPYSLVQVGGKAYGLPQDTGPLVYFYNK 138 (412)
T ss_dssp GHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCBCCCHHH-HHHHGGGBCHHHHHTTEETTEECEEECBCCBEEEEEEH
T ss_pred hHHHHHHHHHhcCCCCcEEEeCchhHHHHHHCCCeecchHH-HHHHHHhccHHHHhhhccCCeEEEeeccCCceEEEEeH
Confidence 78888887543334799999988889999999999999852 1112334444321 2578999999999999999999
Q ss_pred hhcccCCCC-CCCCHHHhcCc
Q 040874 93 SKFRKHDLA-PIEDWKDLWRP 112 (165)
Q Consensus 93 ~~v~~~g~~-~p~sw~dL~d~ 112 (165)
++++++|.+ +|+||++|.+.
T Consensus 139 dl~~~aGl~~~P~Twdel~~~ 159 (412)
T 2z8f_A 139 AEFEKLGITEIPQTADEFIAA 159 (412)
T ss_dssp HHHHHTTCCSCCCBHHHHHHH
T ss_pred HHHHHcCCCCCCCCHHHHHHH
Confidence 999999987 89999999864
No 38
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.32 E-value=1.1e-12 Score=114.70 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=82.7
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeee
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYR 82 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~ 82 (165)
.|.-.+...+++.+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.
T Consensus 33 gIkV~v~~~~~~~~kl~t~~asG~~PDV~~~~~~~~~~~a~~G~L~~L~~~~--~~~d~~~~~~~~~~~~dGk~YgvP~~ 110 (715)
T 4h1g_A 33 GIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIA 110 (715)
T ss_dssp CCEEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEE
T ss_pred CCEEEEEeCCCHHHHHHHHHhCCCCCeEEEEChHHHHHHHHCCCEeeCCcCh--hhhhhcCHHHHHhcEECCEEEEEEEe
Confidence 3433445567888888877655567999999888999999999999998642 23344544332 257999999999
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
+++.+|+||+++|++ +|+||++|++. ++ +|+..+
T Consensus 111 ~~~~~l~YNkdlf~e----~P~TWdEl~~~akklk~~g~~~~ 148 (715)
T 4h1g_A 111 VEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSAL 148 (715)
T ss_dssp EECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred cceEEEEEEhHHhcC----CCCCHHHHHHHHHHHHhcCCCce
Confidence 999999999999987 89999999753 22 455544
No 39
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=99.32 E-value=2.4e-12 Score=108.30 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=76.3
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||.+...++..|||++.+..++..+++.|+|.||+... .+.+++.+.+. ..+|+.|+||+.+++.+|+||+++|
T Consensus 45 ~kl~t~~asG~~PDV~~~~~~~~~~~~~~G~L~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdlf 122 (494)
T 1y4c_A 45 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 122 (494)
T ss_dssp HHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHHhCCCCCeEEEECcHhHHHHHHCCCeeCCCcch--hhHHhCCHHHHHheEECCEEEEEeeeCCeeEEEEEhHHh
Confidence 777765544457999999888899999999999998641 23455554432 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 123 ~~----~P~TwdEl~~~a~klk~~G~~g~~ 148 (494)
T 1y4c_A 123 PN----PPKTWEEIPALDKELKAKGKSALM 148 (494)
T ss_dssp SS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred hC----CCCCHHHHHHHHHHHHhCCceEEE
Confidence 87 8999999987 4554 776654
No 40
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=99.31 E-value=1.8e-12 Score=107.98 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=75.5
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||.+...++..|||++.+..++..+++.|+|+||+... .+.+++.+.+. ..+|+.|++|+..++.+++||+++|
T Consensus 45 ~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~YNkdl~ 122 (487)
T 1hsj_A 45 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 122 (487)
T ss_dssp HHHHHHHHTTCSCSEEEEETTTHHHHHHHTCBCCBCCCH--HHHTTBCHHHHHHTEETTEECEEEEEEECCEEEEEGGGC
T ss_pred HHHHHHHhCCCCCcEEEeCcHhHHHHHHCCCeecCCcch--hhhhhcCHHHHHheeECCEEEEeeeecceeEEEEEhhhh
Confidence 677765433347999999888889999999999998641 23445544332 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 123 ~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (487)
T 1hsj_A 123 PN----PPKTWEEIPALDKELKAKGKSALM 148 (487)
T ss_dssp SS----CCSBSTTSHHHHHHHTTTTCEEEC
T ss_pred cC----CCCCHHHHHHHHHHHhcCCcceee
Confidence 87 8999999987 4665 776664
No 41
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.31 E-value=1.6e-12 Score=108.22 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=75.2
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||++...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|+||+.+++.+|+||++++
T Consensus 45 ~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdlf 122 (465)
T 2zxt_A 45 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 122 (465)
T ss_dssp HHHHHHHHSSCCCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHTTBSSSSBCSEEEEEECCEEECBTTTB
T ss_pred HHHHHHHhCCCCCeEEEECchhHHHHHHCCceecCCcch--hhhhhccHHhHhheEECCEEEEeeccccceEEEEEhHhh
Confidence 677765433347999999888899999999999998641 23445544322 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 123 ~~----~P~Twdel~~~a~~l~~~G~~g~~ 148 (465)
T 2zxt_A 123 PN----PPKTWEEIPALDKELKAKGKSALM 148 (465)
T ss_dssp SS----CCSSSTTSHHHHTTSCSSSCCSBC
T ss_pred cC----CCcCHHHHHHHHHHHhcCCcceeE
Confidence 97 8999999987 5676 665553
No 42
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.31 E-value=9.9e-13 Score=107.26 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=77.1
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---c-CCCceEeeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---R-TRGKIWAAPYR 82 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~-~~g~~y~vP~~ 82 (165)
|.-+.-+.++..+||++...++..|||++.+..++..+++.|+|+||+... .+++.+... . .+|+.|++|+.
T Consensus 64 V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~----~~~~~~~~~~~~~~~dG~~ygvP~~ 139 (416)
T 2xd3_A 64 VTLKTGDALGGLDKLSLDNQNGNVPDVMMAPYDRVGSLGSDGQLSEVKLSD----GAKTDDTTKSLVTAANGKVYGAPAV 139 (416)
T ss_dssp CEEEECCHHHHHHTHHHHHHHSCCCSEEEEEHHHHHHHHHTTCBCCCCCCG----GGCCCHHHHHHHBCTTCCBCCEEEE
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCCCEEEeCchhHHHHHHCCCeecCCHHH----HhhCCHHHHHhheeeCCeEEEEeee
Confidence 333334567788888875433347999999888899999999999999521 244444321 2 57899999999
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcC--cccC
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWR--PELA 115 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d--~~~k 115 (165)
.++.+|+||+++|++ +|+||++|++ .+++
T Consensus 140 ~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~ 170 (416)
T 2xd3_A 140 IESLVMYYNKDLVKD----APKTFADLENLAKDSK 170 (416)
T ss_dssp EECCEEEEETTTCSS----CCCBHHHHHHHHHSGG
T ss_pred cCceEEEEEhhhhcC----CCCCHHHHHHHHHHhh
Confidence 999999999999997 8999999987 3555
No 43
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.31 E-value=2.8e-12 Score=106.87 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=76.8
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||++...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+..++.+|+||++++
T Consensus 60 ~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~YNkdl~ 137 (477)
T 2vgq_A 60 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 137 (477)
T ss_dssp HHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHHhCCCCCeEEEECcHHHHHHHHCCCeecCCcch--hhHhhCCHHHHHheEECCEEEEEecccCceEEEEehHhh
Confidence 777765544457999999888899999999999998641 23445544432 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeeec
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMVN 122 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~d 122 (165)
++ +|+||++|++ .+++ |+..+..
T Consensus 138 ~~----~P~Twdel~~~a~~l~~~g~~g~~~ 164 (477)
T 2vgq_A 138 PN----PPKTWEEIPALDKELKAKGKSALMF 164 (477)
T ss_dssp SS----CCSBGGGHHHHHHHHHHTTCEEECC
T ss_pred cc----CCCCHHHHHHHHHHHHhCCcceeEe
Confidence 97 8999999987 4665 7766643
No 44
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=99.31 E-value=1.8e-12 Score=107.91 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+.+++.+|+||++++
T Consensus 46 ~kl~~~~asg~~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdlf 123 (463)
T 2xz3_A 46 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 123 (463)
T ss_dssp HHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHHTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHHhCCCCCcEEEECchhHHHHHHCCceecCCcch--hhhhhCCHHHHHheEECCEEEEEeeeccceEEEEEhHhh
Confidence 677765433347999999888899999999999998641 23445544332 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 124 ~~----~P~Twdel~~~a~kl~~~G~~g~~ 149 (463)
T 2xz3_A 124 PN----PPKTWEEIPALDKELKAKGKSALM 149 (463)
T ss_dssp SS----CCSBSTTHHHHHHHHHHTTCEEEC
T ss_pred hC----CCCCHHHHHHHHHHHHhCCcceeE
Confidence 97 8999999987 4665 776664
No 45
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.30 E-value=8.8e-13 Score=107.23 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=78.0
Q ss_pred ccccCCCchHHHHHHhhcCCCCCccEEEe-ChHHHHHHHHcCcccccCCCCCcchhcccccccc---cC-CCceEeeeee
Q 040874 8 DGIFNNLSLPFNKVKAKSASYMAADLVSV-GDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RT-RGKIWAAPYR 82 (165)
Q Consensus 8 ~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~-~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~-~g~~y~vP~~ 82 (165)
.-++-+.+++.+||++... +..|||+.. +..++..+++.|+|+||+... ....+++.+.+. .. +|+.|+||+.
T Consensus 61 ~~~~~~~~~~~~kl~~~~a-g~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~-~~~~~~~~~~~~~~~~~~~G~~y~vP~~ 138 (415)
T 3oo8_A 61 TVNTTDHNTFQNNISNYLQ-GTPDSLATWFAGYRLQFFAAQGLLTPIDDVW-DKIGGTFNDAAKSLSKGLDGHYYLVPLY 138 (415)
T ss_dssp EEEECCHHHHHHHHHHHHH-SSCCSEEEEESSHHHHHHHHTTCBCCCHHHH-HHHGGGSCHHHHHHTBCTTSCBCEEEEE
T ss_pred EEEecChHHHHHHHHHHHc-CCCCCEEEecCcchHHHHHHCCceeccHHHH-HHHHhhcCHHHHhhccccCCcEEEEecc
Confidence 3334455788888887654 346999975 677889999999999998521 011133443322 24 8999999999
Q ss_pred ecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 83 WGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
+++.+|+||+++++++|.++|+||++|++.
T Consensus 139 ~~~~~l~Ynkdl~~~~G~~~P~Twdel~~~ 168 (415)
T 3oo8_A 139 NYPWVVFYNKSVFQSKGYEVPASWEAFIAL 168 (415)
T ss_dssp ECCEEEEEEHHHHHHHTCCCCSBHHHHHHH
T ss_pred cceEEEEEeHHHHHHcCCCCCCCHHHHHHH
Confidence 999999999999999898899999999864
No 46
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=99.29 E-value=1.9e-12 Score=108.63 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=78.4
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeee
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRW 83 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~ 83 (165)
|.-.+...+++.+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+
T Consensus 37 IkV~~~~~~~~~~kl~t~~asG~~PDV~~~~~~~~~~~~~~G~L~~L~d~~--~~~d~~~~~~~~~~~~dGk~YgvP~~~ 114 (487)
T 4exk_A 37 IKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTWDAVRYNGKLIAYPIAV 114 (487)
T ss_dssp CEEEEECCTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEE
T ss_pred cEEEEEeCCCHHHHHHHHHhCCCCCeEEEECcHHHHHHHHCCCcccCCcch--hhhhhcCHHHHHhceECCEEEecCeEe
Confidence 333445567888899887665668999999988999999999999998642 22334444322 2579999999999
Q ss_pred cceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 84 GAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 84 ~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
++.+|+||+++|++ +|+||++|.+.
T Consensus 115 ~~~~l~YNkdlf~e----~P~Twdel~~~ 139 (487)
T 4exk_A 115 EALSLIYNKDLLPN----PPKTWEEIPAL 139 (487)
T ss_dssp ECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred ccEEEEEEeecccc----CCchHHHHHHH
Confidence 99999999999987 89999999753
No 47
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=99.28 E-value=9.3e-13 Score=113.70 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=75.0
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecce
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAM 86 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~ 86 (165)
.+...++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|+||+.+++.
T Consensus 36 ~~~~~~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~L~pL~~~~--~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~ 113 (637)
T 4dxb_A 36 TVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEAL 113 (637)
T ss_dssp EEECCTTHHHHHHHHHHHTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECC
T ss_pred EEEeCCCHHHHHHHHHhcCCCCeEEEEChHHHHHHHHCCCEeeCCcCh--hhHhhcCHHHHHhcEECCEEEEEEEecceE
Confidence 344556677777765433346999999989999999999999998642 23444544432 2579999999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCc
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
+|+||+++|++ +|+||++|++.
T Consensus 114 ~l~YNkdlf~e----~P~TwdEl~~~ 135 (637)
T 4dxb_A 114 SLIYNKDLLPN----PPKTWEEIPAL 135 (637)
T ss_dssp EEEEETTTCSS----CCSBSTTHHHH
T ss_pred EEEEEcHHhcC----CCCCHHHHHHH
Confidence 99999999987 89999999754
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.28 E-value=1.5e-12 Score=112.20 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=77.8
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEE
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i 88 (165)
...++..+||.+...++..|||++....++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|
T Consensus 38 ~~~~~~~~kl~~~~~~g~~PDv~~~~~~~~~~~~~~g~l~~l~~~~--~~~~~~~~~~~~~~~~~Gk~ygvP~~~~~~~l 115 (694)
T 3dm0_A 38 EHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSL 115 (694)
T ss_dssp ECCTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHHHBCHHHHHHTEETTEECSEEEEEECCEE
T ss_pred EECccHHHHHHHHhhCCCCCcEEEECchhHhHHhhCCCcccCCchh--hhhhhcChhhhheEEECCEEEEEEEEeeeeEE
Confidence 3456777888776544457999999999999999999999998642 12233443321 257999999999999999
Q ss_pred EEechhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 89 AYKKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 89 ~YN~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
+||+++|++ +|+||++|.+. ++ +|+..+
T Consensus 116 ~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 147 (694)
T 3dm0_A 116 IYNKDLLPN----PPKTWEEIPALDKELKAKGKSAL 147 (694)
T ss_dssp EEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEE
T ss_pred EEchHHccc----CCCCHHHHHHHHHHhhhCCccee
Confidence 999999986 89999999653 33 455443
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.28 E-value=2.9e-12 Score=106.83 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=77.5
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 54 ~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~Y 131 (471)
T 3mq9_A 54 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 131 (471)
T ss_dssp CTTHHHHHHHHHTTTCSCSEEEEETTHHHHHHHTTCBCCCCCCH--HHHTTBCHHHHGGGEETTEECEEEEEEEECEEEE
T ss_pred chHHHHHHHHHHhCCCCCeEEEECChhHHHHHHCCceecCCcch--HHHhhcCHHHHHhhEECCEEEEEeeeccceEEEE
Confidence 35677777766554557999999888999999999999999632 23344444322 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|+++|++ +|+||++|++. ++ +|+..+
T Consensus 132 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 161 (471)
T 3mq9_A 132 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 161 (471)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred EhHHhcC----CCCCHHHHHHHHHHHHhCCCceE
Confidence 9999986 89999999875 33 465554
No 50
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=99.27 E-value=2.8e-12 Score=105.87 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=73.2
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..+||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+.+++.+|+|
T Consensus 40 ~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~Y 117 (449)
T 3iot_A 40 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 117 (449)
T ss_dssp CTTHHHHHHHHGGGTCSCSEEEEETTTHHHHHHTTCBCCCCCCH--HHHTTBCHHHHTTSBSSSCBCCEEEEEEECEEEE
T ss_pred cHHHHHHHHHHhhCCCCCCEEEeCchhHHHHHhCCCcccCCcch--hhhhccCHHHHHhceECCEEEEeccccceeEEEE
Confidence 35667777765544457999999888899999999999999642 23444544332 25789999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~ 112 (165)
|+++|++ +|+||++|++.
T Consensus 118 Nkdl~~~----~P~Twdel~~~ 135 (449)
T 3iot_A 118 NKDLLPN----PPKTWEEIPAL 135 (449)
T ss_dssp ETTTCSS----CCSBGGGHHHH
T ss_pred ehHHhcc----CCCCHHHHHHH
Confidence 9999996 89999999875
No 51
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.27 E-value=1.4e-12 Score=111.84 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=75.5
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecce
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAM 86 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~ 86 (165)
.+...+++.+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|+||+.+++.
T Consensus 50 ~~~~~~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~L~~L~~~~--~~~d~~~~~~~~~~~~dGk~YgvP~~~~~~ 127 (602)
T 4b3n_A 50 TVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEAL 127 (602)
T ss_dssp EEECCTTHHHHHHHHHHHTCSCSEEEEEGGGHHHHHHHTCBCCCCCCH--HHHHHBCHHHHHHTEETTEECEEEEEEECC
T ss_pred EEEeCCCHHHHHHHHHhCCCCCeEEEEChHHHHHHHHCCCeeeCCcch--hhhhhcCHHHHhhcEECCEEEEEEEecceE
Confidence 344566777888765433447999999888999999999999998753 23344444332 2579999999999999
Q ss_pred EEEEechhcccCCCCCCCCHHHhcCc
Q 040874 87 MIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 87 ~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
+|+||++++++ +|+||++|.+.
T Consensus 128 ~l~YNkdlf~e----~P~TwdEl~~~ 149 (602)
T 4b3n_A 128 SLIYNKDLLPN----PPKTWEEIPAL 149 (602)
T ss_dssp EEEEETTTCSS----CCSBTTHHHHH
T ss_pred EEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999987 89999999753
No 52
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=99.26 E-value=2.6e-12 Score=107.85 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=78.6
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 40 ~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~Y 117 (500)
T 3ob4_A 40 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 117 (500)
T ss_dssp CTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCEECCCCCH--HHHHHBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred CccHHHHHHHHHhCCCCCeEEEECchhHHHHHHCCceecCCccH--HHHhhcCHHHHHheEECCEEEEEecccCceEEEE
Confidence 35677777766544457999999888999999999999999642 23444544332 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceeee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISMV 121 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~~ 121 (165)
|+++|++ +|+||++|++. ++ +|+..+.
T Consensus 118 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 148 (500)
T 3ob4_A 118 NKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (500)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHHTTCEEEC
T ss_pred EhHHhcC----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 9999986 89999999875 33 4665543
No 53
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.26 E-value=2.7e-12 Score=104.27 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=75.7
Q ss_pred ccCCCchH--HHHHHhhcCCCCCc-cEEEeChHHHHHHHHcCcccccCCCCCcc--hhcccccc----cccCCCceEeee
Q 040874 10 IFNNLSLP--FNKVKAKSASYMAA-DLVSVGDPWLSFAIEKRLIEPIAGGEDQD--WFKCLSHK----WKRTRGKIWAAP 80 (165)
Q Consensus 10 ~~~~~~~~--~~kl~a~~~~~~~~-Dv~~~~~~~~~~~~~~gll~pld~~~~~~--~~~~i~~~----~~~~~g~~y~vP 80 (165)
++-+.++. .+||.+...++..+ ||+..+..++..+++.|+|+||+...-.. ..+++.+. ....+|+.|++|
T Consensus 39 ~~~~~~~~~~~~kl~~~~aag~~P~Dv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~dGk~ygvP 118 (409)
T 1eu8_A 39 KRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALP 118 (409)
T ss_dssp EECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHTCBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEE
T ss_pred EECChhhhHHHHHHHHHHhcCCCCCCEEEEccccHHHHHHCCCeEechhhccccccchhhhhHHHHHHhccCCCEEEEEe
Confidence 33444444 78888765444455 99999888899999999999998521000 12334332 213579999999
Q ss_pred eeecceEEEEechhcccCC-CCCCCCHHHhcC
Q 040874 81 YRWGAMMIAYKKSKFRKHD-LAPIEDWKDLWR 111 (165)
Q Consensus 81 ~~~~~~~i~YN~~~v~~~g-~~~p~sw~dL~d 111 (165)
+..++.+|+||+++|+++| .++|+||++|.+
T Consensus 119 ~~~~~~~l~Ynkdlf~~aGl~~~P~Twdel~~ 150 (409)
T 1eu8_A 119 VYIDAGLLYYRKDLLEKYGYSKPPETWQELVE 150 (409)
T ss_dssp EEEEECEEEEEHHHHHHTTCCSCCSBHHHHHH
T ss_pred eeccceEEEEEHHHHHhcCCCCCCCCHHHHHH
Confidence 9999999999999999999 578999999975
No 54
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.25 E-value=5.1e-12 Score=106.13 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=74.5
Q ss_pred HHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhc
Q 040874 19 NKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKF 95 (165)
Q Consensus 19 ~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v 95 (165)
+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+.+++.+|+||++++
T Consensus 46 ~kl~~~~aag~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YNkdl~ 123 (509)
T 1r6z_P 46 EKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL 123 (509)
T ss_dssp HHHHHHHHHTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTC
T ss_pred HHHHHHHhCCCCCcEEEECcHhHHHHHHCCceecCCcch--hhhhhCCHHHHhheEECCEEEEeccccCceEEEEEhHhh
Confidence 666654322347999999888999999999999998641 23445544332 2578999999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--cccC--Cceeee
Q 040874 96 RKHDLAPIEDWKDLWR--PELA--GRISMV 121 (165)
Q Consensus 96 ~~~g~~~p~sw~dL~d--~~~k--gki~~~ 121 (165)
++ +|+||++|++ .+++ |+..+.
T Consensus 124 ~~----~P~Twdel~~~a~~l~~~g~~g~~ 149 (509)
T 1r6z_P 124 PN----PPKTWEEIPALDKELKAKGKSALM 149 (509)
T ss_dssp SS----CCSBGGGHHHHHHHHHHTTCEEEC
T ss_pred cC----CCCCHHHHHHHHHHHHhCCcceeE
Confidence 97 8999999987 4564 776654
No 55
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=99.25 E-value=4.2e-12 Score=103.62 Aligned_cols=100 Identities=14% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCchHHHHHHhhcCCCCCccEEE-eChHHHHHHHHcCcccccCCCCCcch--hcc-ccc---ccccCCCceEeeeeeec
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVS-VGDPWLSFAIEKRLIEPIAGGEDQDW--FKC-LSH---KWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~-~~~~~~~~~~~~gll~pld~~~~~~~--~~~-i~~---~~~~~~g~~y~vP~~~~ 84 (165)
.+.++..+||++...++..|||++ .+..++..+++.|+|.||+...-... ... +.+ .+...+|+.|++|+..+
T Consensus 68 ~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~dGk~y~~P~~~~ 147 (433)
T 4gqo_A 68 KESPSSEATIQSAIASKTAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSN 147 (433)
T ss_dssp CCSSSHHHHHHHHHHHTCCCSEEEEECHHHHHHHHHTTSBCCGGGSTTHHHHHHHTTCHHHHHHTCCTTSCCCCEEEEEE
T ss_pred CCcHHHHHHHHHHHHCCCCCeEEEEcCHHHHHHHHHCCCEEEChhhhcccchhhhhhhHHHHHHhcccCCEEEEEeccCc
Confidence 456778888886543345799997 57778899999999999986321000 111 111 22335789999999999
Q ss_pred ceEEEEechhcccCCC-CCCCCHHHhcC
Q 040874 85 AMMIAYKKSKFRKHDL-APIEDWKDLWR 111 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~-~~p~sw~dL~d 111 (165)
+.+|+||+++|+++|. .+|+||++|.+
T Consensus 148 ~~~l~Ynkdlf~~aGl~~pP~Twde~~~ 175 (433)
T 4gqo_A 148 PILFAWRLDTLKELGYDAPPKTYSEALE 175 (433)
T ss_dssp ECEEEECHHHHHHTTCSSCCCBHHHHHH
T ss_pred eEEEEEehhhHHHcCCCCCCCCHHHHHH
Confidence 9999999999999985 46999999975
No 56
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=99.25 E-value=3.2e-12 Score=106.24 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=77.4
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..+||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 42 ~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~yglP~~~~~~~l~Y 119 (475)
T 3n94_A 42 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 119 (475)
T ss_dssp CTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred CccHHHHHHHHhcCCCCCcEEEECCccHHHHHHCCCcccCCccH--hHHhhcCHHhHhheEECCEEEEeeeeccceEEEE
Confidence 35677777765544457999999888999999999999999642 23444444322 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 120 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 149 (475)
T 3n94_A 120 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 149 (475)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred ehHHhcc----CCCCHHHHHHHHHHHHhCCCceE
Confidence 9999996 89999999875 33 466554
No 57
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=99.24 E-value=3.8e-12 Score=105.84 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 40 ~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~~G~~y~~P~~~~~~~l~y 117 (507)
T 3oai_A 40 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 117 (507)
T ss_dssp CTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred CCcHHHHHHHHhhCCCCCCEEEEcchhHHHHHHCCCcccCCchh--hhHhhccHHHHhheEECCEEEEeeccccceEEEE
Confidence 36777788776554557999999888999999999999999632 23444544432 25789999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 118 nkdl~~~----~P~Twdel~~~~~~l~~~g~~~~ 147 (507)
T 3oai_A 118 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 147 (507)
T ss_dssp ETTTCSS----CCSBSTTHHHHHHHHHTTTCEEE
T ss_pred ehHhhcc----CcCCHHHHHHHHHHHHhCCCceE
Confidence 9999996 89999999875 22 466554
No 58
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.24 E-value=8.4e-13 Score=107.18 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=78.9
Q ss_pred chHHHHHHhhcCCCCCccEEEeC-hHHH-HHHHHcCcccccCCCCCcchh-cccccccc---cCCCceEeeeeee-cceE
Q 040874 15 SLPFNKVKAKSASYMAADLVSVG-DPWL-SFAIEKRLIEPIAGGEDQDWF-KCLSHKWK---RTRGKIWAAPYRW-GAMM 87 (165)
Q Consensus 15 ~~~~~kl~a~~~~~~~~Dv~~~~-~~~~-~~~~~~gll~pld~~~~~~~~-~~i~~~~~---~~~g~~y~vP~~~-~~~~ 87 (165)
+++.+||++...++..+||+... ..++ ..+++.|+|+||+...-..++ +.+.+... ..+|+.|++|+.. ++.+
T Consensus 44 ~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~dG~~y~vP~~~~~~~~ 123 (400)
T 2b3f_A 44 VNARAVLKTRMLGGDPPDTFQVHAGMELIGTWVVANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHRSNV 123 (400)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEETTHHHHHTTTTTTCBCCCHHHHHHHTHHHHSCHHHHHHHEETTEECCEECCBEESCE
T ss_pred hhHHHHHHHHHhCCCCCCEEeecCCchHHHHHHhCCCCcCchHHHHhCchhhhcCHhhhhheEECCEEEEEEEeeccCce
Confidence 67888998764333479999998 7788 899999999999852100012 23433321 2578999999998 8899
Q ss_pred EEEechhcccCCCCCCCCHHHhcCc--ccC--Cc-eee
Q 040874 88 IAYKKSKFRKHDLAPIEDWKDLWRP--ELA--GR-ISM 120 (165)
Q Consensus 88 i~YN~~~v~~~g~~~p~sw~dL~d~--~~k--gk-i~~ 120 (165)
++||+++++++|.++|+||++|++. +++ |+ ..+
T Consensus 124 l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~ 161 (400)
T 2b3f_A 124 MWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGLEAPL 161 (400)
T ss_dssp EEECHHHHHHTTCCCCSSHHHHHHHHHHHHHTTCSCCE
T ss_pred EEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCCe
Confidence 9999999999998889999999874 443 65 444
No 59
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.24 E-value=1.1e-12 Score=106.29 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=72.3
Q ss_pred chHHHHHHhhcCCCCCccEEEeC-hHHHHHHHHcCcccccCCCCC-cchhcccccc----cccCCCceEeeeeeecceEE
Q 040874 15 SLPFNKVKAKSASYMAADLVSVG-DPWLSFAIEKRLIEPIAGGED-QDWFKCLSHK----WKRTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 15 ~~~~~kl~a~~~~~~~~Dv~~~~-~~~~~~~~~~gll~pld~~~~-~~~~~~i~~~----~~~~~g~~y~vP~~~~~~~i 88 (165)
++..+||.+...++..|||++.. ..++..+++.|+|+||+...- ....+++.+. ++.++|+.|++|+..++.+|
T Consensus 49 ~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l 128 (405)
T 3i3v_A 49 DDLAQVYETSRLARKEADVVMVNLYDKTLAWTDVGATVDVKPYLDDWGLRGRVLPAALADWTDDEGRVRAFPYFATNWPV 128 (405)
T ss_dssp TTHHHHHHHHHHTTCCCSEEEECCSTTTTTTTTTTSSCCCHHHHHHTTCTTTBCHHHHHHTBCTTSCBCSBCCEEEEECE
T ss_pred HHHHHHHHHHHHCCCCCcEEEecCCcchHHHHhCCCccccHHHHhhcccccccCHHHHHhhccCCCcEEEEeccCceEEE
Confidence 34667777654334579999997 667788999999999985200 0001233333 23345899999999999999
Q ss_pred EEechhcccCCCC-CCCCHHHhcCc
Q 040874 89 AYKKSKFRKHDLA-PIEDWKDLWRP 112 (165)
Q Consensus 89 ~YN~~~v~~~g~~-~p~sw~dL~d~ 112 (165)
+||+++++++|.+ +|+||++|++.
T Consensus 129 ~Ynkdl~~~~G~~~~P~Twdel~~~ 153 (405)
T 3i3v_A 129 AYNRALLDRAGVDAIPTTGDQLIAA 153 (405)
T ss_dssp EEEHHHHHHHTCCSCCCBHHHHHHH
T ss_pred EEeHHHHHHcCCCCCCCCHHHHHHH
Confidence 9999999998876 89999999864
No 60
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=99.22 E-value=7.5e-12 Score=105.90 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=78.8
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+..++.+|+|
T Consensus 42 ~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~Y 119 (539)
T 3h3g_A 42 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 119 (539)
T ss_dssp CTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred chHHHHHHHHHHhCCCCCeEEEECchhHHHHHHCCceecCCccH--HHHhhcCHHHHHhceECCEEEEEeeecCceEEEE
Confidence 46778888877655567999999888999999999999999631 23344444322 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 120 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 149 (539)
T 3h3g_A 120 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 149 (539)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred EhHHhcC----CCCCHHHHHHHHHHHHhCCCceE
Confidence 9999996 89999999865 33 466554
No 61
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.22 E-value=7.1e-12 Score=105.73 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=78.1
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 40 ~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~y 117 (581)
T 3o3u_N 40 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 117 (581)
T ss_dssp CTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred cccHHHHHHHHhhCCCCCcEEEECchhHHHHHhCCccccCCchh--hhhhccChHHHHheEECCEEEEEeeeccceEEEE
Confidence 36677788776555557999999888999999999999999631 23344444322 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 118 nkdl~~~----~P~Twdel~~~~~~l~~~g~~~~ 147 (581)
T 3o3u_N 118 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 147 (581)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred EhHHhhc----CCCCHHHHHHHHHHHhhCCCceE
Confidence 9999996 89999999875 33 466554
No 62
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=99.22 E-value=5.9e-12 Score=106.12 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=76.8
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+|+.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+..++.+|+|
T Consensus 41 ~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~Y 118 (523)
T 3py7_A 41 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 118 (523)
T ss_dssp CTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred chHHHHHHHHHhhCCCCCcEEEECcHhHHHHHHCCCeecCCcch--hhhhhcCHHHHhheEECCEEEEEeeeccceEEEE
Confidence 35666777765434446999999888999999999999999642 23344444332 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 119 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 148 (523)
T 3py7_A 119 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 148 (523)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred EhHHhhc----CCCCHHHHHHHHHHHHhCCCcee
Confidence 9999986 89999999875 32 465544
No 63
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.20 E-value=7.4e-12 Score=105.62 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=77.2
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 41 ~~~~~~kl~~~~asg~~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~Y 118 (522)
T 3mp6_A 41 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 118 (522)
T ss_dssp CTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHHTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred chhHHHHHHHHhhCCCCCeEEEECChhHHHHHhCCCcccCCcch--hhhhhcChHhHhhEEECCEEEEEeeeccceEEEE
Confidence 35677777765444457999999888999999999999999642 23444544322 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 119 Nkdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 148 (522)
T 3mp6_A 119 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 148 (522)
T ss_dssp ETTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred EhHhhcc----CCcCHHHHHHHHHHHHhCCCceE
Confidence 9999996 89999999875 22 465544
No 64
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=99.20 E-value=6.3e-12 Score=101.71 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCC----Ccchhccccccc-----ccCCCceEeeeee
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGE----DQDWFKCLSHKW-----KRTRGKIWAAPYR 82 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~----~~~~~~~i~~~~-----~~~~g~~y~vP~~ 82 (165)
++.++.++|+.+...++..|||+.....++..+++.|+|.||+... ..-....+.+.. ...+|+.|+||+.
T Consensus 44 ~~~~~~~~~~~aa~~sg~~PDv~~~~~~~~~~~~~~g~l~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~dGk~y~vP~~ 123 (419)
T 4aq4_A 44 GNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFN 123 (419)
T ss_dssp SSHHHHHHHHHHHHHTTCCCSEEEEEGGGHHHHHTCTTEECHHHHHHHHTCCCCGGGBCHHHHHHTBCTTTCCBSSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEECchhHHHHHHCCCccccHHHHhhcccccchhhhhHHHHHHhccCcCCEEEecccc
Confidence 3568889998875433457999999988999999999999996421 000112233321 1257899999999
Q ss_pred ecceEEEEechhcccCCC---CCCCCHHHhcCc
Q 040874 83 WGAMMIAYKKSKFRKHDL---APIEDWKDLWRP 112 (165)
Q Consensus 83 ~~~~~i~YN~~~v~~~g~---~~p~sw~dL~d~ 112 (165)
.++.+|+||+++|+++|. +.|+||++|.+.
T Consensus 124 ~~~~~l~Ynkdlf~~aGl~~~~~p~Twde~~~~ 156 (419)
T 4aq4_A 124 SSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADY 156 (419)
T ss_dssp EECEEEEEEHHHHHHTTCCTTCCCSBHHHHHHH
T ss_pred ccceEEEEEhHHHHHcCCCCCCCCCCHHHHHHH
Confidence 999999999999999985 458999999864
No 65
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.18 E-value=8.1e-12 Score=99.98 Aligned_cols=80 Identities=13% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEechhcccCCCCCCCC
Q 040874 29 MAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYKKSKFRKHDLAPIED 105 (165)
Q Consensus 29 ~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN~~~v~~~g~~~p~s 105 (165)
..+||++++..++..+++.|+|+||+...+ ++.+++.+... ..+|+.|++|+..++.+|+||++++.. ++|+|
T Consensus 48 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~-~~~~~~~~~~~~~~~~~G~~ygvP~~~~~~~l~YNkd~~g~---~~P~T 123 (371)
T 3thi_A 48 DDLDVFVLDSIFLSHFVDAGYLLPFGSQDI-DQAEDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKI---GQVDN 123 (371)
T ss_dssp TTCCEEEEEGGGHHHHHHTTCEECBCGGGC-TTGGGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHH---HTCCB
T ss_pred CCCCEEEECchhHHHHHhCCCcccCchhhc-cCccccChHHHhheEECCEEEEecccCceeEEEEeCccccC---CCCCc
Confidence 479999998889999999999999997432 34555555432 257999999999999999999998764 38999
Q ss_pred HHHhcCc
Q 040874 106 WKDLWRP 112 (165)
Q Consensus 106 w~dL~d~ 112 (165)
|++|++.
T Consensus 124 wdel~~~ 130 (371)
T 3thi_A 124 IYELYKK 130 (371)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 66
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.18 E-value=1.4e-11 Score=106.69 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=76.4
Q ss_pred chHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEe
Q 040874 15 SLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYK 91 (165)
Q Consensus 15 ~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN 91 (165)
++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+||
T Consensus 41 ~~~~~kl~~~~asg~~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~YN 118 (658)
T 3f5f_A 41 DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN 118 (658)
T ss_dssp TTHHHHHHHHHHTTCSCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEE
T ss_pred ccHHHHHHHHHhCCCCCcEEEECcHhHHHHHHCCCEecCCcch--hhHhhcCHHHHHHhEECCEEEEEecccCeEEEEEE
Confidence 5666777665433447999999888999999999999999642 23344444322 257999999999999999999
Q ss_pred chhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 92 KSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 92 ~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
++++++ +|+||++|++. ++ +|+..+
T Consensus 119 kdl~~~----~P~Twdel~~~a~~l~~~g~~~~ 147 (658)
T 3f5f_A 119 KDLLPN----PPKTWEEIPALDKELKAKGKSAL 147 (658)
T ss_dssp TTTCSS----CCSBGGGHHHHHHHHHTTTCEEE
T ss_pred hHHhhC----CCCCHHHHHHHHHHHHhCCCCeE
Confidence 999996 89999999875 22 466554
No 67
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=99.17 E-value=1e-11 Score=107.67 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=77.4
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..+||++.+..++..++++|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+|
T Consensus 76 ~~d~~~kL~~~lasG~~PDV~~~~~~~~~~~~~~G~L~pLdd~~--~~~~~~~~~~~~~~~~dGk~YglP~~~~~~~l~Y 153 (653)
T 3osr_A 76 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 153 (653)
T ss_dssp CTTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred CCcHHHHHHHHHhCCCCCEEEEECcHHHHHHHHCCCEEECCCcH--HHHhhCCHHHHHheEECCEEEEEEecCceeEEEE
Confidence 45667777765433347999999888999999999999999642 23444544332 25789999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceeee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISMV 121 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~~ 121 (165)
|++++++ +|+||++|++. ++ +|+..+.
T Consensus 154 Nkdlfee----~P~TWdEL~~~akklk~~G~~~~~ 184 (653)
T 3osr_A 154 NKDLLPN----PPKTWEEIPALDKELKAKGKSALM 184 (653)
T ss_dssp ETTTCSS----CCSBSTTHHHHHHHHHTTTCEEEC
T ss_pred EhHHhhC----CCCCHHHHHHHHHHHHhCCCceeE
Confidence 9999986 89999999875 33 4665543
No 68
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=99.17 E-value=1.2e-11 Score=105.46 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=77.5
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+|+.+...++..|||++.+..++..+++.|+|+||+... ...+++.+.+. ..+|+.|++|+..++.+++|
T Consensus 40 ~~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~l~pL~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~Y 117 (568)
T 3h4z_A 40 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 117 (568)
T ss_dssp CTTHHHHHHHHGGGTCSCSEEEEEHHHHHHHHHHTCBCCCCCCH--HHHTTBCTHHHHHTEETTEECSEEEEEECCEEEE
T ss_pred CCcHHHHHHHHHHcCCCCeEEEECcHhHHHHHHCCCEEeCCcch--hhhhhcCHHHHhheEECCEEEEEEeccCceEEEE
Confidence 35677777765544457999999888999999999999999732 23445544432 25799999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcCc--cc--CCceee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWRP--EL--AGRISM 120 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~ 120 (165)
|++++++ +|+||++|++. ++ +|+..+
T Consensus 118 Nkdl~~~----~P~Twdel~~~a~kl~~~g~~~~ 147 (568)
T 3h4z_A 118 NKDLLPN----PPKTWEEIPALDKELKAKGKSAL 147 (568)
T ss_dssp ETTTCSS----CCSBSTTHHHHHHHHHTTTCEEE
T ss_pred EhHHhhC----CCCCHHHHHHHHHHHHhCCCceE
Confidence 9999986 89999999875 33 465544
No 69
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.11 E-value=4.8e-11 Score=105.49 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred CchHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEE
Q 040874 14 LSLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAY 90 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~Y 90 (165)
.++..+||.+...++..|||++.+..++..+++.|+|+||+... ...+++.+... ..+|+.|++|+.+++.+++|
T Consensus 44 ~~~~~~kl~~~~asG~~PDVv~~~~~~~~~~~~~G~L~~L~~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~Y 121 (805)
T 2nvu_B 44 PDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIY 121 (805)
T ss_dssp CTTHHHHHHHHHHSSCSCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHHTSBCTTHHHHTEETTEECEEEEEEEECEEEE
T ss_pred CccHHHHHHHHHhCCCCCeEEEECchhHHHHHHCCceecCCcch--hhHhhcCHHHHhheEECCEEEEEecccceeEEEE
Confidence 35566677654333347999999888899999999999998642 12334443321 25789999999999999999
Q ss_pred echhcccCCCCCCCCHHHhcC--cccC--Ccee
Q 040874 91 KKSKFRKHDLAPIEDWKDLWR--PELA--GRIS 119 (165)
Q Consensus 91 N~~~v~~~g~~~p~sw~dL~d--~~~k--gki~ 119 (165)
|++++++ +|+||++|++ ++++ |+..
T Consensus 122 Nkdlf~~----~P~TWdEl~~~a~klk~~g~~~ 150 (805)
T 2nvu_B 122 NKDLLPN----PPKTWEEIPALDKELKAKGKSA 150 (805)
T ss_dssp CTTTCSS----CCSBSTTHHHHHHHHHTTTCEE
T ss_pred EhHhhcC----CCcCHHHHHHHHHHHHhcCCCc
Confidence 9999986 8999999974 3554 5543
No 70
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=99.10 E-value=3.8e-11 Score=104.23 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=76.6
Q ss_pred chHHHHHHhhcCCCCCccEEEeChHHHHHHHHcCcccccCCCCCcchhcccccccc---cCCCceEeeeeeecceEEEEe
Q 040874 15 SLPFNKVKAKSASYMAADLVSVGDPWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWK---RTRGKIWAAPYRWGAMMIAYK 91 (165)
Q Consensus 15 ~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~---~~~g~~y~vP~~~~~~~i~YN 91 (165)
++..+|+++...++..|||++.+..++..++++|+|+||+... ...+++.+... ..+|+.|++|+.+++.+|+||
T Consensus 77 ~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~l~pLd~~~--~~~~~~~~~~~~~~~~dGk~YgvP~~~~~~~l~YN 154 (661)
T 3osq_A 77 DKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYN 154 (661)
T ss_dssp TTHHHHHHHHHHTTCSCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEE
T ss_pred CCHHHHHHHHHhcCCCCeEEEECcHHHHHHHHCCCEEeCCcch--hhhhhcCHHHHhhceECCEEEEEEEecCeEEEEEE
Confidence 5566666655433346999999888999999999999999742 22344444332 147899999999999999999
Q ss_pred chhcccCCCCCCCCHHHhcCc--cc--CCceeeec
Q 040874 92 KSKFRKHDLAPIEDWKDLWRP--EL--AGRISMVN 122 (165)
Q Consensus 92 ~~~v~~~g~~~p~sw~dL~d~--~~--kgki~~~d 122 (165)
++++++ +|+||+||++. ++ +|+..+..
T Consensus 155 kdl~~~----~P~Twdel~~~~~~lk~~g~~~l~~ 185 (661)
T 3osq_A 155 KDLLPN----PPKTWEEIPALDKELKAKGKSALMF 185 (661)
T ss_dssp TTTCSS----CCSBSTTHHHHHHHHHTTTCEEECC
T ss_pred hHHhcC----CCCCHHHHHHHHHHHHhcCCceEEe
Confidence 999986 89999999976 22 46666543
No 71
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=99.02 E-value=2.3e-11 Score=99.44 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=73.1
Q ss_pred hHHHHHHhhcCCCCCccEEEeChHHHH-HHHHcCcccccCCCCCcchhccccc-ccc--cCCCceEeeeeeecceEEEEe
Q 040874 16 LPFNKVKAKSASYMAADLVSVGDPWLS-FAIEKRLIEPIAGGEDQDWFKCLSH-KWK--RTRGKIWAAPYRWGAMMIAYK 91 (165)
Q Consensus 16 ~~~~kl~a~~~~~~~~Dv~~~~~~~~~-~~~~~gll~pld~~~~~~~~~~i~~-~~~--~~~g~~y~vP~~~~~~~i~YN 91 (165)
+..+||++...++..|||+.....++. .+++.|+|+||+...-..++.+..+ .+. ..+|+.|++|+..++.+|+||
T Consensus 85 ~~~~kl~~~~a~g~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~dGk~ygvP~~~~~~~l~YN 164 (430)
T 2w7y_A 85 DLKDIMNNKVASGEFPDVIDLAGNAVSLAAIEQKLVLDLKPYIDSNKLEKNVGLNYKQNQKDGKIYTVHEQLFTMGLWYN 164 (430)
T ss_dssp CHHHHHHHHHTTTCCCSEEECTTCCCCHHHHHTTCBCCCHHHHHHTTCHHHHTTHHHHTEETTEECCBCSBCEEECEEEE
T ss_pred cHHHHHHHHHhCCCCCcEEEeCCchHHHHHHhCCCccCchHhhccccHhhhhhHhhhccCcCCeEEEeeccccceEEEEe
Confidence 677888765444457999998765543 3578999999975200001222111 111 257899999999999999999
Q ss_pred chhcccCCCCCC---CCHHHhcCc--ccC--C-ceeee
Q 040874 92 KSKFRKHDLAPI---EDWKDLWRP--ELA--G-RISMV 121 (165)
Q Consensus 92 ~~~v~~~g~~~p---~sw~dL~d~--~~k--g-ki~~~ 121 (165)
+++|+++|.++| +||++|++. +++ | .+++.
T Consensus 165 kdl~~~aGl~~P~~~~Twdel~~~~~~l~~~g~~~~~~ 202 (430)
T 2w7y_A 165 KDIFAKAGAKTPDQWNTWDDFTQAMASIRKQDGVYAFG 202 (430)
T ss_dssp HHHHHHHTCCCGGGCCSHHHHHHHHHHHHTSSSCEEEC
T ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCceEee
Confidence 999999887666 899999875 443 3 45554
No 72
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=98.93 E-value=3.8e-10 Score=94.41 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=74.0
Q ss_pred CchHHHHHHhhcCCCCCccEEE-eC-hHHHHHHHHcCcccccCCCC--Ccchhcccc---cc----cccCCCceEeeee-
Q 040874 14 LSLPFNKVKAKSASYMAADLVS-VG-DPWLSFAIEKRLIEPIAGGE--DQDWFKCLS---HK----WKRTRGKIWAAPY- 81 (165)
Q Consensus 14 ~~~~~~kl~a~~~~~~~~Dv~~-~~-~~~~~~~~~~gll~pld~~~--~~~~~~~i~---~~----~~~~~g~~y~vP~- 81 (165)
.++..+||.+...++..|||+. .+ ...+..+++.|+|.||+.-. .-+++..+. |. ....+|++|++|+
T Consensus 51 ~~~~~~kl~~~~asG~~PDi~~~~~~~~~~~~~~~~G~l~~L~d~i~~~~~~~~~~~~~~p~~~~~~~~~dGk~Y~lP~~ 130 (502)
T 3vlv_A 51 ATNSQEQFNLMMASGQLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQRAITAPDGNIYYLPYV 130 (502)
T ss_dssp CSCHHHHHHHHHTTTCCCSEEEESSCHHHHHHHHHHTSBCCCHHHHHHHCHHHHHHHHHCHHHHHHHBCTTSCBCCEEEE
T ss_pred CCCHHHHHHHHHHcCCCCeEEEecCCcHHHHHHHHCCCEEEcHHHHHHhChHHHHHHHHChHHHHhccCCCCCEEEeccc
Confidence 4667788877655556899999 66 67888999999999998421 013444432 21 2336899999999
Q ss_pred --eecceEEEEechhcccCCCCCCCCHHHhc
Q 040874 82 --RWGAMMIAYKKSKFRKHDLAPIEDWKDLW 110 (165)
Q Consensus 82 --~~~~~~i~YN~~~v~~~g~~~p~sw~dL~ 110 (165)
.....+++||++.++++|.++|+||++|.
T Consensus 131 ~~~~~~~~~~ynkd~l~~~Gl~~P~T~del~ 161 (502)
T 3vlv_A 131 PDGLVSRGYFIRQDWLDKLHLKTPQTVDELY 161 (502)
T ss_dssp CCCSCCEEEEEEHHHHHHTTCCCCCBHHHHH
T ss_pred cCCCcCcceEEeHHHHHHcCCCCCCCHHHHH
Confidence 45778999999999999988999999997
No 73
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=98.92 E-value=1.1e-10 Score=98.29 Aligned_cols=99 Identities=17% Similarity=0.052 Sum_probs=70.7
Q ss_pred CCchHHHHHHhhcCCCCCccEEEeChHHHHHHH-HcCcccccCCCC-Ccchhcccc---ccc----ccCCCceEeeeee-
Q 040874 13 NLSLPFNKVKAKSASYMAADLVSVGDPWLSFAI-EKRLIEPIAGGE-DQDWFKCLS---HKW----KRTRGKIWAAPYR- 82 (165)
Q Consensus 13 ~~~~~~~kl~a~~~~~~~~Dv~~~~~~~~~~~~-~~gll~pld~~~-~~~~~~~i~---~~~----~~~~g~~y~vP~~- 82 (165)
+.++..+|+.+...++..|||++.. .+...+. ..|+|+||+... ..++++++. |.+ +..+|+.|++|+.
T Consensus 78 ~~~~~~~kl~~~~asg~~pDi~~~~-~~~~~~~~~~G~l~~L~~~i~~~~~~~~~~~~~p~~~~~~~~~dG~~Y~lP~~~ 156 (535)
T 3omb_A 78 TREAWAQQKNATLASGDIADVNLNG-YGAVEAYQYPGMFEDLSKDLDKLPNVKAFFKQKPDAKKMSTDSKGRIYAIADGR 156 (535)
T ss_dssp EHHHHHHHHHHHHHHTCCCSEEESS-CCTHHHHHSTTSBCCGGGGGGGCHHHHHHHHHCHHHHHHHCCTTSCCSSEEEEC
T ss_pred CchhHHHHHHHHHhCCCCCcEEEec-CChhhhHhcCCcEEehHHHHHhChhHHHHHHhCHHHHHhccCCCCCEEEeeccc
Confidence 4457777777654333479999983 3334455 699999998631 114555542 222 2268999999999
Q ss_pred -----ecceEEEEechhcccCCCCCCCCHHHhcCc
Q 040874 83 -----WGAMMIAYKKSKFRKHDLAPIEDWKDLWRP 112 (165)
Q Consensus 83 -----~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~ 112 (165)
..+.+++||++.++++|.++|+||++|.+.
T Consensus 157 ~~~~~~~~~~l~ynkdll~~~Gl~~P~Twdel~~~ 191 (535)
T 3omb_A 157 GKAYSGTGQHMLINKAWLDKLGLQVPTTWDELENV 191 (535)
T ss_dssp CGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHHH
T ss_pred CcCccccccceEeeHHHHHHcCCCCCCCHHHHHHH
Confidence 556899999999999998899999999853
No 74
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=98.90 E-value=1.5e-09 Score=89.56 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=73.2
Q ss_pred CCCchHHHHHHhhcCCCCCccEEEeCh--HHHHHHHHcCcccccCCC--CCcchhcccc----cc---cccCCCceEeee
Q 040874 12 NNLSLPFNKVKAKSASYMAADLVSVGD--PWLSFAIEKRLIEPIAGG--EDQDWFKCLS----HK---WKRTRGKIWAAP 80 (165)
Q Consensus 12 ~~~~~~~~kl~a~~~~~~~~Dv~~~~~--~~~~~~~~~gll~pld~~--~~~~~~~~i~----~~---~~~~~g~~y~vP 80 (165)
.+.++..+||.+..+++..|||++... ..+..++++|+|.||+.- +..|+++.+. +. ....+|++|++|
T Consensus 49 ~~~~d~~~Kl~~~lasG~~PDi~~~~~~~~~~~~~~~~G~l~dL~d~i~~~~p~~k~~~~~~~~~~~~~~~~dGkiY~lP 128 (490)
T 3a09_A 49 RAATNSQEQFNLMMASGQLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNLKAFFKTHPEVQRAITAPDGNIYYLP 128 (490)
T ss_dssp TTCSCHHHHHHHHHTSSSCCSEEEETTCHHHHHHHHHHTSBCCCHHHHHHHCHHHHHHHHHCHHHHHHHBCTTSCBCCEE
T ss_pred CCCCCHHHHHHHHHHCCCcCeEEEECCchHHHHHHHHCCCEEECHHHHHhhChhHHHHHhhCHHHHHHhcccCCeEEEEE
Confidence 455677788877665556899999864 467889999999999852 0013333322 11 123689999999
Q ss_pred ee---ecceEEEEechhcccCCCCCCCCHHHhcC
Q 040874 81 YR---WGAMMIAYKKSKFRKHDLAPIEDWKDLWR 111 (165)
Q Consensus 81 ~~---~~~~~i~YN~~~v~~~g~~~p~sw~dL~d 111 (165)
+. +.+.+++||++.++++|.++|+||++|.+
T Consensus 129 ~~~~~~~~~~~~ynkd~l~k~Gl~~P~T~de~~~ 162 (490)
T 3a09_A 129 YVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYT 162 (490)
T ss_dssp EECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHH
T ss_pred eecCCCcceEEEEEHHHHHHcCCCCCCchhHHHH
Confidence 85 34568999999999999889999999964
No 75
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=98.83 E-value=4.6e-09 Score=81.88 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=62.5
Q ss_pred cCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEEE
Q 040874 11 FNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMIA 89 (165)
Q Consensus 11 ~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i~ 89 (165)
+.+..++++++.++ ..+||++.++ .++.++.++|+|+|..... +.. .++|| +++.+|+
T Consensus 42 ~~~s~~l~~~~~~g----~~~Dv~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~---------~~~p~-~~~~~l~ 100 (310)
T 1sbp_A 42 HGGSGKQATSVING----IEADTVTLALAYDVNAIAERGRIDKNWIKR-------LPD---------DSAPY-TSTIVFL 100 (310)
T ss_dssp ESCHHHHHHHHHTT----CCCSEEEESSHHHHHHHHHTTSSCTTGGGG-------SHH---------HHCSE-EBCEEEE
T ss_pred cCChHHHHHHHhcC----CCCCEEEeCcHHHHHHHHhCCCcCcchhhc-------CCc---------cCCce-eEEEEEE
Confidence 35566788888643 3699999876 6888899999999854222 111 13566 6789999
Q ss_pred EechhcccCCCCCCCCHHHhcCcccCCceeeec
Q 040874 90 YKKSKFRKHDLAPIEDWKDLWRPELAGRISMVN 122 (165)
Q Consensus 90 YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d 122 (165)
||++.. . +|+||+||+++++ ||++.+
T Consensus 101 yn~~~~-~----~p~tw~dL~~~~~--ki~~~~ 126 (310)
T 1sbp_A 101 VRKGNP-K----QIHDWNDLIKPGV--SVITPN 126 (310)
T ss_dssp EETTCT-T----CCCSGGGGGSTTC--CEECCC
T ss_pred EeCCCC-C----CCCCHHHHcCccc--eEecCC
Confidence 999973 2 6899999999987 788876
No 76
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=98.41 E-value=4.4e-07 Score=70.62 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=59.5
Q ss_pred ccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecceEE
Q 040874 10 IFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGAMMI 88 (165)
Q Consensus 10 ~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~~~i 88 (165)
+++++.++++||+++. ..+||++.++. ++..+.++|+. .+.+|+.++.++|
T Consensus 43 ~~~~s~~l~~~i~~~g---~~~Dv~~~~~~~~~~~l~~~g~~-------------------------~~~~~~~~~~~vi 94 (296)
T 3cg1_A 43 EASGSVMAVRKVTDLG---RKADVIGVADYTLIPQLLIPNYT-------------------------DFYVLFATNEIVI 94 (296)
T ss_dssp EEECHHHHHHHHHTSC---CCCSEEEESSTTHHHHHTTTTTC-------------------------SCCEEEEECCEEE
T ss_pred ecCCHHHHHHHHHhCC---CCCCEEEECChhHHHHHhcCCCC-------------------------CcceecccccEEE
Confidence 6788899999998722 36999999775 45555544431 1457888999999
Q ss_pred EEechh-----cccCCCCCCCCHHHhc-CcccCCceeeecC
Q 040874 89 AYKKSK-----FRKHDLAPIEDWKDLW-RPELAGRISMVNS 123 (165)
Q Consensus 89 ~YN~~~-----v~~~g~~~p~sw~dL~-d~~~kgki~~~d~ 123 (165)
+||++. ++. .|+||.||+ +|+ +||++.|.
T Consensus 95 ~~~~~~~~~~~i~~----~p~sw~dll~~p~--~~i~~~~p 129 (296)
T 3cg1_A 95 AFTDKSRYVEEMKS----NPDKWYEILARED--VRFGFSDP 129 (296)
T ss_dssp EECTTSTTHHHHHH----CGGGHHHHHTSTT--CCEEEECT
T ss_pred EEcCCCchhcccCC----CCCCHHHHhcCCC--cEEEeCCC
Confidence 999985 333 579999988 674 79999874
No 77
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=98.35 E-value=1.9e-06 Score=67.24 Aligned_cols=88 Identities=16% Similarity=0.330 Sum_probs=64.0
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.++++++++++|+++.. ++||++..+. ++..+.++|++. +.+|+.++
T Consensus 34 ~V~~~~~~s~~l~~~i~~~g~---~~Dv~~~a~~~~~~~l~~~gl~~-------------------------~~~~~~~~ 85 (296)
T 3cfx_A 34 DVQREAAGSAQSVRKITELGK---KADVLASADYALIPSLMVPEYAD-------------------------WYAAFARN 85 (296)
T ss_dssp EEEEEECCHHHHHHHHHTSCC---CCSEEEESSTTHHHHHTTTTTCS-------------------------CEEEEEEC
T ss_pred eEEEEeCchHHHHHHHHhCCC---CCcEEEECChhhHHHHHhCCCcc-------------------------ceeeeEee
Confidence 444567888999999987432 5999998764 577777777641 34678889
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhc-CcccCCceeeecCh
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLW-RPELAGRISMVNSP 124 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~-d~~~kgki~~~d~~ 124 (165)
.++|+||++.....+ ..|++|.||+ +| ++||++.+..
T Consensus 86 ~l~i~~~~~~~~~~~-~~~~~w~dll~~~--~~~I~~~~p~ 123 (296)
T 3cfx_A 86 QMILAYTNESKYGDE-INTDNWYEILRRP--DVRYGFSNPN 123 (296)
T ss_dssp CEEEEECTTSTTTTT-CCTTTHHHHHHST--TCCEEEECTT
T ss_pred eEEEEEeCCCccccC-CCcccHHHHhCCC--CeEEEEeCCC
Confidence 999999998753210 1478999955 77 5899999843
No 78
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=98.31 E-value=2.5e-06 Score=66.42 Aligned_cols=88 Identities=15% Similarity=0.321 Sum_probs=63.7
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.++++++++++|+++.. ++||++..+. ++..+.++|++. +.+|+.++
T Consensus 34 ~V~~~~~~s~~l~~~i~~~g~---~~Dv~~~a~~~~~~~l~~~gl~~-------------------------~~~~~~~~ 85 (295)
T 3cij_A 34 EVQTEAAGSAATIRKVTELGR---KADVIATADYTLIQKMMYPEFAN-------------------------WTIMFAKN 85 (295)
T ss_dssp EEEEEEECHHHHHHHHHTSCC---CCSEEEESSTHHHHHHHTTTTCC-------------------------CCEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHhCCC---CCCEEEEcChhhHHHHHhCCCcc-------------------------eeeEEEee
Confidence 344567788899999987432 5999998764 577777777641 23578889
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhc-CcccCCceeeecCh
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLW-RPELAGRISMVNSP 124 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~-d~~~kgki~~~d~~ 124 (165)
.++|+||++.....+ -.|++|.||+ +| ++||++.|..
T Consensus 86 ~lvl~~~~~~~~~~~-i~~~~w~dll~~~--~~~I~~~~p~ 123 (295)
T 3cij_A 86 QIVLAYRNDSRYADE-INSQNWYEILKRP--DVRFGFSNPN 123 (295)
T ss_dssp CEEEEECTTSTTTTT-CCTTTHHHHHTST--TCCEEEECTT
T ss_pred eEEEEEeCCCccccc-cCcccHHHHhcCC--CcEEEEeCCC
Confidence 999999998754211 1478999965 66 6899999843
No 79
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=98.22 E-value=4.6e-06 Score=64.85 Aligned_cols=88 Identities=15% Similarity=0.303 Sum_probs=63.1
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.++++++++++|+++.. ++||++..+. ++..+.++|++. +.+|+.++
T Consensus 34 ~V~~~~~~s~~l~~~i~~~g~---~~Dv~~~a~~~~~~~l~~~gl~~-------------------------~~~~~~~~ 85 (292)
T 3cfz_A 34 DVEREPAGSVACVRKIIDLGK---KADILASADYSLIPQMMMPKYAD-------------------------WYVMFARN 85 (292)
T ss_dssp EEEEEEECHHHHHHHHHTSCC---CCSEEEESSTTHHHHHTTTTTCS-------------------------CCEEEEEC
T ss_pred eEEEEeCCHHHHHHHHHhcCC---CCcEEEECChHHHHHHHhCCCcc-------------------------ceeeeEec
Confidence 344467888999999987432 5999998764 566777766541 23577889
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhc-CcccCCceeeecCh
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLW-RPELAGRISMVNSP 124 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~-d~~~kgki~~~d~~ 124 (165)
.++|+||++.....+. .|++|.||+ +| ++||++.|..
T Consensus 86 ~lvi~~~~~~~~~~~i-~~~~w~dll~~p--~~~I~~~dp~ 123 (292)
T 3cfz_A 86 EIVLAYTDKSKYKDEI-NSTNWYKILQRP--DVKIGFSNPN 123 (292)
T ss_dssp CEEEEECTTSTTTTTC-CTTTHHHHTTST--TCCEEEECTT
T ss_pred cEEEEEcCCCccccCC-CcccHHHHhcCC--CcEEEeCCCC
Confidence 9999999987542111 468999965 66 6899999843
No 80
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=98.08 E-value=5.5e-06 Score=61.89 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=60.0
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-.+++++++++||+ . .+||++.++. ++..+.++| +++++.. ++ .++..+.
T Consensus 30 V~~~~~~s~~l~~~l~---~---~~Dv~~~~~~~~~~~l~~~~-~~~~~~~----~~----------------~~~~~~~ 82 (237)
T 2hxw_A 30 VNVNFGPQATWFEKAK---K---DADILFGASDQSALAIASDF-GKDFNVS----KI----------------KPLYFRE 82 (237)
T ss_dssp EEEEESSHHHHHHHHH---H---HCSEEEESSHHHHHHHHTTS-GGGCCGG----GC----------------EEEEEEE
T ss_pred EEEEeCChHHHHHHhc---c---CCCEEEeCCHHHHHHHHHhc-ccccCcc----cc----------------cccccCc
Confidence 4446788999999998 2 5999999885 666677766 5555431 11 2345667
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
.+|+||++. .. .|+||+||++|++ ||++.|.
T Consensus 83 ~~l~~~~~~-~~----~~~sw~dL~~~~~--~i~~~d~ 113 (237)
T 2hxw_A 83 AIILTQKGN-PL----KIKGLKDLANKKV--RIVVPEG 113 (237)
T ss_dssp EEEEESTTC-TT----CCCSHHHHHHSCC--CEEECCC
T ss_pred eEEEEeCCC-CC----CCCCHHHhcCCCc--EEEecCC
Confidence 899999984 22 5799999999976 7998874
No 81
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=97.92 E-value=9.7e-05 Score=53.92 Aligned_cols=97 Identities=12% Similarity=0.023 Sum_probs=66.2
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-.++++++++++|+++. .+||++..+ .++.++.++|+++|.+ ..|+.++.
T Consensus 29 v~~~~~~s~~l~~~l~~g~----~~Dv~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~ 81 (231)
T 1atg_A 29 VVISSGSSGPVYAQIVNGA----PYNVFFSADEKSPEKLDNQGFALPGS-----------------------RFTYAIGK 81 (231)
T ss_dssp EEEEEECHHHHHHHHHTTC----CCSEEECSSSHHHHHHHHTTCBCTTC-----------------------CEEEEECC
T ss_pred EEEEECCcHHHHHHHHcCC----CCCEEEeCChhHHHHHHhcCCCcCCc-----------------------eeEeeeee
Confidence 3335677888888987653 389988855 4677777788766531 24567788
Q ss_pred eEEEEechhcccCCCCCCCCHHHhcCcccCCceeeecCh----HHHHHHHHHHhCC
Q 040874 86 MMIAYKKSKFRKHDLAPIEDWKDLWRPELAGRISMVNSP----REVIGSVLKYMGA 137 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kgki~~~d~~----~~~~~~al~~~G~ 137 (165)
++++||++.. .+.||+||.++++ |++++.+.. ...+..++...|.
T Consensus 82 ~vlv~~~~~~------~~~~~~dL~~~~~-~~i~~~~~~~~~~~~~~~~~l~~~g~ 130 (231)
T 1atg_A 82 LVLWSAKPGL------VDNQGKVLAGNGW-RHIAISNPQIAPYGLAGTQVLTHLGL 130 (231)
T ss_dssp EEEEESSTTT------SCTTSGGGGSSSC-SCEEEECTTTCHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCC------CCcchhhhccCCC-CEEEecCCCCCchhHHHHHHHHHCCC
Confidence 8999999863 2458999999875 789888732 2233344555554
No 82
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=97.82 E-value=0.00013 Score=55.00 Aligned_cols=88 Identities=18% Similarity=0.409 Sum_probs=64.0
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.|+++.+++++|+.+. ++||++..+ .++..+.++|++.+.. ..|+..+
T Consensus 35 ~V~~~~~~s~~l~~~i~~g~----~~Dv~~~a~~~~~~~l~~~g~~~~~~-----------------------~~~~~~~ 87 (237)
T 3r26_A 35 DVVSSFASSSTLARQIEAGA----PADLFISADQKWMDYAVDKKAIDTAT-----------------------RQTLLGN 87 (237)
T ss_dssp EEEEEEECHHHHHHHHHHTC----CCSEEECSSHHHHHHHHHTTCBCGGG-----------------------CEEEEEE
T ss_pred eEEEEECCHHHHHHHHHcCC----CceEEEECCHHHHHHHHHCCCCCCCc-----------------------eeeeEcc
Confidence 35557889999999998653 599999966 4788899999876521 1355677
Q ss_pred ceEEEEechhc-ccCCCCCCCCHHHhcCcccCCceeeecC
Q 040874 85 AMMIAYKKSKF-RKHDLAPIEDWKDLWRPELAGRISMVNS 123 (165)
Q Consensus 85 ~~~i~YN~~~v-~~~g~~~p~sw~dL~d~~~kgki~~~d~ 123 (165)
.++|+||++.. +..+...+++|.+|+++ +||++.+.
T Consensus 88 ~lvl~~~~~~~~~~~~i~~~~~l~~l~~~---~~iai~~p 124 (237)
T 3r26_A 88 SLVVVAPKASVQKDFTIDSKTNWTSLLNG---GRLAVGDP 124 (237)
T ss_dssp CEEEEEESSCCCCCCCCSTTCCHHHHHTT---CCEEEECT
T ss_pred eEEEEEeCCCCcccccccchHhHHHhcCC---CeEEEeCC
Confidence 89999999752 21111246789998874 79999884
No 83
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=97.62 E-value=0.00042 Score=53.01 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=61.4
Q ss_pred ccccccCCCchHHHHHHhhcCCCCCccEEEeCh-HHHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeec
Q 040874 6 SIDGIFNNLSLPFNKVKAKSASYMAADLVSVGD-PWLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWG 84 (165)
Q Consensus 6 ~v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~-~~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~ 84 (165)
.|.-.|+++.+++++|+.+. ++||++..+ .++..+.++|++++.. ..++..+
T Consensus 51 ~V~~~~~~Sg~l~~qi~~g~----~~DV~~sa~~~~~~~l~~~gl~~~~~-----------------------~~~~a~~ 103 (253)
T 3gzg_A 51 PVRVSYAASSALARQIEQGA----PADVFLSADLEWMDYLQQHGLVLPAQ-----------------------RHNLLGN 103 (253)
T ss_dssp CEEEEEECHHHHHHHHHTTC----CCSEEECSSHHHHHHHHHTTSSCGGG-----------------------EEEEEEE
T ss_pred eEEEEECChHHHHHHHHcCC----CceEEEECCHHHHHHHHHCCCcCCCc-----------------------ceeEEee
Confidence 45557889999999998653 599999966 5788899999876532 1244567
Q ss_pred ceEEEEechhccc-CCCCCCCC--HHHhcCcccCCceeeecC
Q 040874 85 AMMIAYKKSKFRK-HDLAPIED--WKDLWRPELAGRISMVNS 123 (165)
Q Consensus 85 ~~~i~YN~~~v~~-~g~~~p~s--w~dL~d~~~kgki~~~d~ 123 (165)
.++|+||++.... . .+++ |.++..+ .+||++.|.
T Consensus 104 ~lvl~~~~~~~~~~~---~i~~~dl~~l~~~--~~~iai~dP 140 (253)
T 3gzg_A 104 TLVLVAPASSKLRVD---PRAPGAIAKALGE--NGRLAVGQT 140 (253)
T ss_dssp CEEEEEETTCCCCCC---TTSTTHHHHHTTT--TCCEEEECT
T ss_pred EEEEEEECCCCcccC---CCCHHHHHHhhcC--CCEEEEeCC
Confidence 8899999986421 1 3566 6665443 589999884
No 84
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=90.69 E-value=1.3 Score=35.36 Aligned_cols=86 Identities=17% Similarity=0.348 Sum_probs=49.4
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCcccccCCCCCcchhcccccccccCCCceEeeeeeecc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRLIEPIAGGEDQDWFKCLSHKWKRTRGKIWAAPYRWGA 85 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gll~pld~~~~~~~~~~i~~~~~~~~g~~y~vP~~~~~ 85 (165)
|.-.|+++.++..++..+.. ++||++..+. ++.++.+.|+. .+.+++..+.
T Consensus 73 V~~~~ggSg~l~~qi~e~G~---~aDVf~sad~~~~~~l~~~g~~-------------------------~~~~~~a~n~ 124 (354)
T 3k6v_A 73 VQREAAGSAQSVRKITELGK---KADVLASADYALIPSLMVPEYA-------------------------DWYAAFARNQ 124 (354)
T ss_dssp EEEEEECHHHHHHHHHTSCC---CCSEEEESSTTHHHHHTTTTTC-------------------------SCEEEEEECC
T ss_pred EEEEeCCHHHHHHHHHhcCC---CccEEEECCHHHHHHHHhCCCC-------------------------CCceEeECCe
Confidence 44456666666666653222 4777776553 55555443320 1234566788
Q ss_pred eEEEEechhcccCCCCCCCCH-HHhcCcccCCceeeecC
Q 040874 86 MMIAYKKSKFRKHDLAPIEDW-KDLWRPELAGRISMVNS 123 (165)
Q Consensus 86 ~~i~YN~~~v~~~g~~~p~sw-~dL~d~~~kgki~~~d~ 123 (165)
++|+++++.-...+. ...+| ++|.++.. ||++.+.
T Consensus 125 lVliv~~~~p~~~~I-~~~~~~~~L~~~~~--riai~~P 160 (354)
T 3k6v_A 125 MILAYTNESKYGDEI-NTDNWYEILRRPDV--RYGFSNP 160 (354)
T ss_dssp EEEEECTTSTTTTTC-CTTTHHHHHHSTTC--CEEEECT
T ss_pred EEEEEECCCcccccc-CcccHHHHhcCCCC--EEEEcCC
Confidence 999999864321000 12367 57888753 9999884
No 85
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=40.37 E-value=1.2e+02 Score=22.97 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=27.8
Q ss_pred eeeecceEEEEechhcccCCCCCCCCHHHhcCcccCC-ceeeecC-h-HHHHHHHHHHhCCCCCC
Q 040874 80 PYRWGAMMIAYKKSKFRKHDLAPIEDWKDLWRPELAG-RISMVNS-P-REVIGSVLKYMGASYNS 141 (165)
Q Consensus 80 P~~~~~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kg-ki~~~d~-~-~~~~~~al~~~G~~~~~ 141 (165)
++..+..+|+.+++. +.+|++|| +| +|++... . ...+...+...|+++.+
T Consensus 95 ~~~~~~~~lvv~~~s-------~i~s~~DL-----kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~ 147 (348)
T 3uif_A 95 WGTTSNSYLVVPKNS-------TAKSIKDL-----KGKKIALHRGRPWELAFSNLLQSEGLTFKD 147 (348)
T ss_dssp CCCCCCCEEEEETTC-------CCCSGGGG-----TTSEEEECTTSTHHHHHHHHHHHTTCCGGG
T ss_pred ccCCCceEEEEECCC-------CCCCHHHc-----CCCEEEecCCChHHHHHHHHHHHcCCCHHH
Confidence 334445567777652 57898887 44 4555422 1 22344455667876533
No 86
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=23.07 E-value=63 Score=24.07 Aligned_cols=38 Identities=16% Similarity=0.035 Sum_probs=18.8
Q ss_pred cccccCCCchHHHHHHhhcCCCCCccEEEeChH-HHHHHHHcCc
Q 040874 7 IDGIFNNLSLPFNKVKAKSASYMAADLVSVGDP-WLSFAIEKRL 49 (165)
Q Consensus 7 v~~~~~~~~~~~~kl~a~~~~~~~~Dv~~~~~~-~~~~~~~~gl 49 (165)
|.-.|+++.+++.+++.+ .+||++..+. ....++++|+
T Consensus 36 V~~~~~gSg~ll~qi~~G-----~aDVfisa~~~~~~~l~~~G~ 74 (242)
T 3kn3_A 36 LKWVAVGTGNALKLGENC-----DVDVVFVHAPKVELEYVEKGF 74 (242)
T ss_dssp EEEEEECHHHHHHHHHTT-----CCSEEEECCHHHHHHHHHHTS
T ss_pred EEEEEcCcHHHHHHHhcC-----CCCEEEecChHhHHHHHhcCC
Confidence 334455555666555443 2566665443 3344444443
No 87
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=21.10 E-value=2.5e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=26.1
Q ss_pred ceEEEEechhcccCCCCCCCCHHHhcCcccCC-ceeeecCh--H-HHHHHHHHHhCCCCC
Q 040874 85 AMMIAYKKSKFRKHDLAPIEDWKDLWRPELAG-RISMVNSP--R-EVIGSVLKYMGASYN 140 (165)
Q Consensus 85 ~~~i~YN~~~v~~~g~~~p~sw~dL~d~~~kg-ki~~~d~~--~-~~~~~al~~~G~~~~ 140 (165)
..+++++++.-. +.+|++|| +| +|++.... . ..+...+...|.++.
T Consensus 117 ~~~~~v~~~~~~-----~i~s~~DL-----~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~ 166 (346)
T 3qsl_A 117 MIGVGVSKKNLP-----GYKGPADL-----KGRKIGVTAPGSSTNMVVNFFLAKHGLKAS 166 (346)
T ss_dssp CEEEEEETTTCT-----TCCSGGGG-----TTCEEEESSTTSHHHHHHHHHHHHTTCCGG
T ss_pred CcEEEEecCccc-----CCCChHHc-----CCCEEEECCCCcHHHHHHHHHHHHcCCCHH
Confidence 356777775421 57899998 44 45654311 1 233445567788653
No 88
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=20.11 E-value=88 Score=23.08 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=8.7
Q ss_pred eeeeecceEEEEech
Q 040874 79 APYRWGAMMIAYKKS 93 (165)
Q Consensus 79 vP~~~~~~~i~YN~~ 93 (165)
.|+..+..+|+..++
T Consensus 79 ~~~~~n~lVlV~P~~ 93 (236)
T 3lr1_A 79 KDVMYNDFVIVGPKN 93 (236)
T ss_dssp EEEEECCEEEEECTT
T ss_pred EEEEcCcEEEEEECC
Confidence 355556666666554
Done!