BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040875
(930 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/604 (36%), Positives = 371/604 (61%), Gaps = 10/604 (1%)
Query: 327 EDGNLKQNNREEDNKKLTAPAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSM 386
D + K + +E ++ + +F R+L LN EW +G AI+ G +QP ++ +
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 387 ISVYFLKDHDEI-KEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSK 445
+ V+ E ++ + +SL F L I S +T Q + F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 446 ILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISW 505
+L +V WFD +N++GA+ +RLA DA V+ G R+A++ Q ++++ +SLI W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 506 RLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDE---SSKLAAEAVSNLRTITAFSS 562
+L L+++A+ P++ + V +K +S + +K + E S K+A EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIAIA---GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 563 QERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAK 622
+++ M ++ + P R ++++ + GI +F+++++ A AF +G LV + + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFE 968
Query: 623 SLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKIT 682
++ +F +V + + D AK + + + + ++++ +I+ +G +P +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLE 1028
Query: 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742
G+++ V F YP RP + + +G S+ ++ ++ ALVG SG GKST++ L+ERFYDP+ G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 743 VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDK-IDESEIIEAAKAA 801
V +DG++I+ +++ LR + +VSQEP LF ++ ENI YG + + + EI+ AAK A
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148
Query: 802 NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861
N H FI L + Y+T GD+G QLSGGQKQRIAIARA+++ P +LLLDEATSALD++SEK
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 862 LVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSL 921
+VQEAL++ GRT +V+AHRLSTIQN D+I V++ G+V E G+H+ LLA+ G Y+S+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSM 1266
Query: 922 VSLQ 925
VS+Q
Sbjct: 1267 VSVQ 1270
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/581 (35%), Positives = 330/581 (56%), Gaps = 22/581 (3%)
Query: 364 LGCLSAILFGAVQPVYAFAMGSMISVYF-----------LKDHDE------IKEKTRFYS 406
+G L+AI+ G P+ G M + + + D+ ++E+ Y+
Sbjct: 52 VGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111
Query: 407 LCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICS 466
+ G+ L+ Q ++ +IR+ I+ E+GWFD + G + +
Sbjct: 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD--VGELNT 169
Query: 467 RLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 526
RL D + + +GD++ + Q +++ F + W+L LVI+A+ P++ +
Sbjct: 170 RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWA 229
Query: 527 VLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586
+L + K + A ++ +A E ++ +RT+ AF Q++ L+ E +R G++++
Sbjct: 230 KILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289
Query: 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTT 646
A I + + L+ ALAFWYG LV + + +F ++ + A
Sbjct: 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349
Query: 647 DIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGF 706
A A VF ++D I+ G++P+ I G++E + +HF+YP+R +V I KG
Sbjct: 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGL 409
Query: 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766
++ +++ ++ ALVG SG GKST + L++R YDPL G+V IDG+DIR+ ++R LR + +V
Sbjct: 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 767 SQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826
SQEP LFA T+ ENI YG D + EI +A K ANA+DFI L +DT G+RG QLS
Sbjct: 470 SQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886
GGQKQRIAIARA+++NP +LLLDEATSALD++SE +VQ AL++ GRT++V+AHRLST+
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 887 QNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927
+N D+IA + G +VE+G+H+ L+ + G Y+ LV QTA
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQTA 627
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 152/301 (50%), Gaps = 3/301 (0%)
Query: 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQD 70
I A+++ W RQ ++R + AI+ Q++G+FD+H E+ + +++D I +
Sbjct: 123 IVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH--DVGELNTRLTDDVSKINE 180
Query: 71 VLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGRILMVLARKMR 130
+ +K+ F +A FFG +I+GF W+ I+ +IL K
Sbjct: 181 GIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL 240
Query: 131 EEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKGFASGIN-A 189
Y KA + E ++++RTV AF G+ K L+ +++ L+ + +LG+K+ + + G
Sbjct: 241 HAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFL 300
Query: 190 ITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249
+ YA ++ +YG+ LV+ G V ++++G ++G N + + A A
Sbjct: 301 LIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360
Query: 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVA 309
+ +I P IDS + G + G +EF+N+ F+YPSR E I K LKV +G TVA
Sbjct: 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA 420
Query: 310 L 310
L
Sbjct: 421 L 421
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 1/311 (0%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
+ L L I++I FL+ + + + GE R+R + K++LRQDV +FD +T + +
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ND ++ +L N+A I+ + WQ + +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLC 180
+L A K ++E + I AI + RTV + E K ++ +LQ + +K+
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 181 KGFA-SGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKY 239
G S A+ Y ++ +G+ LV V + IV G A+G S
Sbjct: 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 240 ISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFC 299
++A + HI +I++ P+IDS + +G G V+F VVF YP+RP + +
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 300 LKVPAGNTVAL 310
L+V G T+AL
Sbjct: 1054 LEVKKGQTLAL 1064
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/604 (36%), Positives = 370/604 (61%), Gaps = 10/604 (1%)
Query: 327 EDGNLKQNNREEDNKKLTAPAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSM 386
D + K + +E ++ + +F R+L LN EW +G AI+ G +QP ++ +
Sbjct: 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKV 731
Query: 387 ISVYFLKDHDEI-KEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSK 445
+ V+ E ++ + +SL F L I S +T Q + F GE LTKR+R +
Sbjct: 732 VGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKS 791
Query: 446 ILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISW 505
+L +V WFD +N++GA+ +RLA DA V+ G R+A++ Q ++++ +SLI W
Sbjct: 792 MLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGW 851
Query: 506 RLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDE---SSKLAAEAVSNLRTITAFSS 562
+L L+++A+ P++ + V +K +S + +K + E S K+A EA+ N RT+ + +
Sbjct: 852 QLTLLLLAIVPIIAIA---GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 563 QERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAK 622
+++ M ++ + P R ++++ + GI +F+++++ A F +G LV + + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFE 968
Query: 623 SLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKIT 682
++ +F +V + + D AK + + + + ++++ +I+ +G +P +
Sbjct: 969 NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLE 1028
Query: 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742
G+++ V F YP RP + + +G S+ ++ ++ ALVG SG GKST++ L+ERFYDP+ G
Sbjct: 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088
Query: 743 VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDK-IDESEIIEAAKAA 801
V +DG++I+ +++ LR + +VSQEP LF ++ ENI YG + + + EI+ AAK A
Sbjct: 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148
Query: 802 NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861
N H FI L + Y+T GD+G QLSGGQKQRIAIARA+++ P +LLLDEATSALD++SEK
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 862 LVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSL 921
+VQEAL++ GRT +V+AHRLSTIQN D+I V++ G+V E G+H+ LLA+ G Y+S+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ--KGIYFSM 1266
Query: 922 VSLQ 925
VS+Q
Sbjct: 1267 VSVQ 1270
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/581 (35%), Positives = 330/581 (56%), Gaps = 22/581 (3%)
Query: 364 LGCLSAILFGAVQPVYAFAMGSMISVYF-----------LKDHDE------IKEKTRFYS 406
+G L+AI+ G P+ G M + + + D+ ++E+ Y+
Sbjct: 52 VGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111
Query: 407 LCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICS 466
+ G+ L+ Q ++ +IR+ I+ E+GWFD + G + +
Sbjct: 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD--VGELNT 169
Query: 467 RLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 526
RL D + + +GD++ + Q +++ F + W+L LVI+A+ P++ +
Sbjct: 170 RLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWA 229
Query: 527 VLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586
+L + K + A ++ +A E ++ +RT+ AF Q++ L+ E +R G++++
Sbjct: 230 KILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289
Query: 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTT 646
A I + + L+ ALAFWYG LV + + +F ++ + A
Sbjct: 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349
Query: 647 DIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGF 706
A A VF ++D I+ G++P+ I G++E + +HF+YP+R +V I KG
Sbjct: 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGL 409
Query: 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766
++ +++ ++ ALVG SG GKST + L++R YDPL G+V IDG+DIR+ ++R LR + +V
Sbjct: 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 767 SQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826
SQEP LFA T+ ENI YG D + EI +A K ANA+DFI L +DT G+RG QLS
Sbjct: 470 SQEPVLFATTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886
GGQKQRIAIARA+++NP +LLLDEATSALD++SE +VQ AL++ GRT++V+AHRLST+
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 887 QNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927
+N D+IA + G +VE+G+H+ L+ + G Y+ LV QTA
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMRE--KGIYFKLVMTQTA 627
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 152/301 (50%), Gaps = 3/301 (0%)
Query: 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQD 70
I A+++ W RQ ++R + AI+ Q++G+FD+H E+ + +++D I +
Sbjct: 123 IVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH--DVGELNTRLTDDVSKINE 180
Query: 71 VLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGRILMVLARKMR 130
+ +K+ F +A FFG +I+GF W+ I+ +IL K
Sbjct: 181 GIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKEL 240
Query: 131 EEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKGFASGIN-A 189
Y KA + E ++++RTV AF G+ K L+ +++ L+ + +LG+K+ + + G
Sbjct: 241 HAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFL 300
Query: 190 ITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249
+ YA ++ +YG+ LV+ G V ++++G ++G N + + A A
Sbjct: 301 LIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYE 360
Query: 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVA 309
+ +I P IDS + G + G +EF+N+ F+YPSR E I K LKV +G TVA
Sbjct: 361 VFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVA 420
Query: 310 L 310
L
Sbjct: 421 L 421
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 1/311 (0%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
+ L L I++I FL+ + + + GE R+R + K++LRQDV +FD +T + +
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ND ++ +L N+A I+ + WQ + +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLC 180
+L A K ++E + I AI + RTV + E K ++ +LQ + +K+
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 181 KGFA-SGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKY 239
G S A+ Y ++ +G+ LV V + IV G A+G S
Sbjct: 934 FGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 240 ISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFC 299
++A + HI +I++ P+IDS + +G G V+F VVF YP+RP + +
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 300 LKVPAGNTVAL 310
L+V G T+AL
Sbjct: 1054 LEVKKGQTLAL 1064
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/572 (35%), Positives = 339/572 (59%), Gaps = 13/572 (2%)
Query: 364 LGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQ 423
+G +A + G + P Y+ S ++V F + + + F++L F L+ + +
Sbjct: 756 IGMSTATIGGFIYPTYSVFFTSFMNV-FAGNPADFLSQGHFWALMFLVLAAAQGICSFLM 814
Query: 424 QYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRV 483
++ E LT+ +R + +L+ +G+FD +N+SG I +RLA D +R+ + R
Sbjct: 815 TFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF 874
Query: 484 ALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDE- 542
+ ++ TL S+ ++ W++AL+IIA+ P+V +G+ + +R + K +K+ E
Sbjct: 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVA---FGQYLRGRRFTGKNVKSASEF 931
Query: 543 --SSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVS 600
S K+A EA+ N+RT+ A + ++ + + + P +E +++++I G+ + S++
Sbjct: 932 ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLY 991
Query: 601 CVVALAFWYGGRLVARG--YINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASV 658
+ A+ G L+ + + + + + + A + + AK + A +
Sbjct: 992 LLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGII 1051
Query: 659 FAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTAL 718
F +L + +KI+ G + +K+ G + + V FAYP RP++ I KG S ++E ++ AL
Sbjct: 1052 FGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110
Query: 719 VGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVR 778
VG SG GKST++ L+ERFYD L G + IDG +I++ + R +A+VSQEP LF ++
Sbjct: 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170
Query: 779 ENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837
ENI YG + +++ EAA+ AN H+FIA L EG++T GDRG QLSGGQKQRIAIAR
Sbjct: 1171 ENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230
Query: 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897
A+++NP +LLLDEATSALD++SEK+VQEAL+R GRT +V+AHRL+T+ N D IAV+
Sbjct: 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSN 1290
Query: 898 GRVVEEGSHESLLAKGPAGAYYSLVSLQTAEQ 929
G ++E+G+H L+++ GAYY L Q E+
Sbjct: 1291 GTIIEKGTHTQLMSE--KGAYYKLTQKQMTEK 1320
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 201/503 (39%), Positives = 297/503 (59%), Gaps = 11/503 (2%)
Query: 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALL 486
+ Y E + R+R+ + IL E+ WFD N SG + ++L + V+ GD++ +
Sbjct: 160 YLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDKIGMA 217
Query: 487 VQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQ---DES 543
Q LS F ++ SW+L LV++AV P+ +C + + K MS I+ ++
Sbjct: 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFA---IAKSMSTFAIRETLRYAKA 274
Query: 544 SKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVV 603
K+ E +S++RT+ + + L+ A E ++ GV + GI ++
Sbjct: 275 GKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISF 334
Query: 604 ALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLD 663
ALAF+ G V G +N + F ++ + AG + A + ++ VLD
Sbjct: 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLD 394
Query: 664 RDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSG 723
R I+ G + KI G I ++ VHF YP+RPDV I +G ++ + A ++ ALVG SG
Sbjct: 395 RKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454
Query: 724 SGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITY 783
GKSTII L+ R+YD LKG + IDG D+R +L LR++VA+VSQEPALF T+ ENI+
Sbjct: 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISL 514
Query: 784 GASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843
G + I E++ A K ANA FI L GY+T GDRG QLSGGQKQRIAIARA+++NP
Sbjct: 515 G-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573
Query: 844 AVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903
+LLLDEATSALD++SE +VQ+AL++ GRT++++AHRLSTI+N D+I + G+VVE
Sbjct: 574 KILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEV 633
Query: 904 GSHESLLAKGPAGAYYSLVSLQT 926
G H +L+A+ G YY LV+ QT
Sbjct: 634 GDHRALMAQ--QGLYYDLVTAQT 654
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 3/302 (0%)
Query: 10 WIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQ 69
W A + C+ E+ R+R ++K+ILRQ++ +FD + + T + + + ++ ++
Sbjct: 150 WAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGT--LATKLFDNLERVK 207
Query: 70 DVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGRILMVLARKM 129
+ +K+ ++ F +IV F WQ + + A +
Sbjct: 208 EGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRE 267
Query: 130 REEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKGFASG-IN 188
Y KA +VE ISS+RTV + G L+ +S+A++ + K G+ +GL G + G +
Sbjct: 268 TLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQ 327
Query: 189 AITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGE 248
A + ++ Y G V G + +++++G ALG + A A
Sbjct: 328 ASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAAS 387
Query: 249 HIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTV 308
I +V+ R P IDS + G K G++ NV F YPSRP+ I + L+V AG TV
Sbjct: 388 GIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTV 447
Query: 309 AL 310
AL
Sbjct: 448 AL 449
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 126/313 (40%), Gaps = 4/313 (1%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
M L LA I +FL + E +R + +L Q +G+FD ++ +I +
Sbjct: 799 MFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTR 858
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ D ++ + + + + + F WQ + GR
Sbjct: 859 LATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGR 918
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLC 180
K E+ + I AI +VRTV A E + F L K +K+
Sbjct: 919 RFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFI 978
Query: 181 KGFASGINAITYAIWSFLAY-YGSRLVMYHGA--KGGAVFAAGTTIVVGGQALGAGLSNF 237
+G + G + + + AY G L++ + V I + LG S F
Sbjct: 979 QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYF 1038
Query: 238 KYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKD 297
++A AG I +++++ IDS ++ GE +K G+V F+NV FAYP RPE I K
Sbjct: 1039 PEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKG 1097
Query: 298 FCLKVPAGNTVAL 310
V G T+AL
Sbjct: 1098 LSFSVEPGQTLAL 1110
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 343 bits (879), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 212/595 (35%), Positives = 338/595 (56%), Gaps = 29/595 (4%)
Query: 346 PAFRRLLALNIREWKQ--ASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTR 403
P R+LL L E ++ A++G L+ + + F +G +I V + + +
Sbjct: 5 PEARKLLGLAYPERRRLAAAVGFLT--MSSVISMSAPFFLGKIIDVIY--TNPTVDYSDN 60
Query: 404 FYSLCFFGLSIFSLL---TNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENS 460
LC GLS L N + Y +G+ + R+R ++ S IL EV +FD+
Sbjct: 61 LTRLCL-GLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR-- 117
Query: 461 SGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLV-- 518
+G + +RL+ D ++ V + ++ ++ + ++ +M +S LA +++V P V
Sbjct: 118 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 177
Query: 519 IVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQ----ERILKMLEKAQ 574
I +YG+ L++++K + ++++LA E + N+RT+ AF + E+ ++
Sbjct: 178 IAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 235
Query: 575 EAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWY-GGRLVARGYINAKSLFEIFLVLVS 633
+ R+E ++ G + L ++ L+ Y GG L+ ++ L +
Sbjct: 236 QLARKEAFARAGFFG-----ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFW 290
Query: 634 TGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFA 693
G I + +++ KG A ++ +L+R+ K+ + + G +E + VHFA
Sbjct: 291 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFA 350
Query: 694 YPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753
YPARP+V IF+ FS++I + TALVG SGSGKST++ L+ R YDP G + +DG DIR
Sbjct: 351 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410
Query: 754 YHLRSLRRHVALVSQEPALFAVTVRENITYGASDK--IDESEIIEAAKAANAHDFIAGLS 811
+ LR + VSQEP LF+ ++ ENI YGA D + EI A+ ANA FI
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 470
Query: 812 EGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871
+G++T G++G+ LSGGQKQRIAIARA+LKNP +LLLDEATSALD+++E LVQEAL+RLM
Sbjct: 471 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 530
Query: 872 VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQT 926
GRT +V+AHRLSTI+N +M+AVL+QG++ E G HE LL+K P G Y L++ Q+
Sbjct: 531 DGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK-PNGIYRKLMNKQS 584
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 149/318 (46%), Gaps = 21/318 (6%)
Query: 7 CIAWIAAFL--------EAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEII 58
C+ A FL Y +G+R R+R +ILRQ+V +FD T T E+I
Sbjct: 65 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELI 122
Query: 59 SSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIY 118
+ +S+DT ++ ++E L + L A + F + IY
Sbjct: 123 NRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIY 182
Query: 119 GRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQG 178
GR L L + ++ +A + E I +VRTV AF E +++++S + ++L K+
Sbjct: 183 GRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 242
Query: 179 LCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVG---GQALGAGLS 235
+ G ++ + Y L+M G+ V + ++ G ++G GLS
Sbjct: 243 FARAGFFGATGLSGNLIVLSVLYKGGLLM--GSAHMTVGELSSFLMYAFWVGISIG-GLS 299
Query: 236 NF-KYISEAASAGEHIRDVIKRVPDIDSENMEGETLEK--FLGEVEFRNVVFAYPSRPET 292
+F + + AG + ++++R P + EG L + F G +EF+NV FAYP+RPE
Sbjct: 300 SFYSELMKGLGAGGRLWELLEREPKLPFN--EGVILNEKSFQGALEFKNVHFAYPARPEV 357
Query: 293 IIFKDFCLKVPAGNTVAL 310
IF+DF L +P+G+ AL
Sbjct: 358 PIFQDFSLSIPSGSVTAL 375
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 339 bits (870), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 211/595 (35%), Positives = 337/595 (56%), Gaps = 29/595 (4%)
Query: 346 PAFRRLLALNIREWKQ--ASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTR 403
P R+LL L E ++ A++G L+ + + F +G +I V + + +
Sbjct: 36 PEARKLLGLAYPERRRLAAAVGFLT--MSSVISMSAPFFLGKIIDVIY--TNPTVDYSDN 91
Query: 404 FYSLCFFGLSIFSLL---TNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENS 460
LC GLS L N + Y +G+ + R+R ++ S IL EV +FD+
Sbjct: 92 LTRLCL-GLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTR-- 148
Query: 461 SGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLV-- 518
+G + +RL+ D ++ V + ++ ++ + ++ +M +S LA +++V P V
Sbjct: 149 TGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSI 208
Query: 519 IVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQ----ERILKMLEKAQ 574
I +YG+ L++++K + ++++LA E + N+RT+ AF + E+ ++
Sbjct: 209 IAVIYGR--YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVM 266
Query: 575 EAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWY-GGRLVARGYINAKSLFEIFLVLVS 633
+ R+E ++ G + L ++ L+ Y GG L+ ++ L +
Sbjct: 267 QLARKEAFARAGFFG-----ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFW 321
Query: 634 TGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFA 693
G I + +++ KG A ++ +L+R+ K+ + + G +E + VHFA
Sbjct: 322 VGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFA 381
Query: 694 YPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753
YPARP+V IF+ FS++I + TALVG SGSGKST++ L+ R YDP G + +DG DIR
Sbjct: 382 YPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 441
Query: 754 YHLRSLRRHVALVSQEPALFAVTVRENITYGASDK--IDESEIIEAAKAANAHDFIAGLS 811
+ LR + VSQEP LF+ ++ ENI YGA D + EI A+ ANA FI
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 812 EGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871
+G++T G++G+ LSGGQKQRIAIARA+LKNP +LLLDEATSALD+++E LVQEAL+RLM
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM 561
Query: 872 VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQT 926
GRT +V+AH LSTI+N +M+AVL+QG++ E G HE LL+K P G Y L++ Q+
Sbjct: 562 DGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSK-PNGIYRKLMNKQS 615
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 27/321 (8%)
Query: 7 CIAWIAAFL--------EAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEII 58
C+ A FL Y +G+R R+R +ILRQ+V +FD T T E+I
Sbjct: 96 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELI 153
Query: 59 SSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIY 118
+ +S+DT ++ ++E L + L A + F + IY
Sbjct: 154 NRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIY 213
Query: 119 GRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQG 178
GR L L + ++ +A + E I +VRTV AF E +++++S + ++L K+
Sbjct: 214 GRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 273
Query: 179 LCKGFASGINAITYAIWSFLAYYGSRLVM--YHGAKGGA----VFAAGTTIVVGGQALGA 232
+ G ++ + Y L+M H G ++A I +GG
Sbjct: 274 FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGG----- 328
Query: 233 GLSNF-KYISEAASAGEHIRDVIKRVPDIDSENMEGETLEK--FLGEVEFRNVVFAYPSR 289
LS+F + + AG + ++++R P + EG L + F G +EF+NV FAYP+R
Sbjct: 329 -LSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGVILNEKSFQGALEFKNVHFAYPAR 385
Query: 290 PETIIFKDFCLKVPAGNTVAL 310
PE IF+DF L +P+G+ AL
Sbjct: 386 PEVPIFQDFSLSIPSGSVTAL 406
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 277/520 (53%), Gaps = 10/520 (1%)
Query: 407 LCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICS 466
L GL I +T+ Y ++ + +R+ + ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 467 RLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 526
R+ D+ V S + +V+ +SI F M SW+L++++I + P+V + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 527 VLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586
+ +SK + + + A + + + + F QE K +K R +G++
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTT 646
+ I + + S +A + + A ++ +F +++ + + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 647 DIAKGSNAVASVFAVLDRDTKINPEDPKGYRP-EKITGHIELQYVHFAYPARPDVIIFKG 705
+G A ++F +LD + E +G R E+ TG +E + V F YP R DV +
Sbjct: 307 QFQRGMAACQTLFTILDSEQ----EKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRN 361
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
++ I A K+ ALVG+SGSGKSTI LI RFYD +G + +DG D+R Y L SLR VAL
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVAL 421
Query: 766 VSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825
VSQ LF TV NI Y +++ +I EAA+ A A DFI + G DT G+ G+ L
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481
Query: 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885
SGGQ+QRIAIARA+L++ +L+LDEATSALD++SE+ +Q AL+ L RTS+V+AHRLST
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 886 IQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925
I+ D I V+E G +VE G+H LL G Y L +Q
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLLEH--RGVYAQLHKMQ 579
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 131/318 (41%), Gaps = 21/318 (6%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
+++ L + I +++ +YC + + MR ++ V +FD ST ++S
Sbjct: 70 VVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ--STGTLLSR 127
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ D+ + S L + A G +I+ F WQ + +
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSK 187
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVG---EGKTLDEFSSALQGSVKLGLKQ 177
+++ M+ + T E+ + + V F G E K D+ S+ ++ Q
Sbjct: 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR-------LQ 240
Query: 178 GLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAV--FAAGTTIVVGGQ--ALGAG 233
G+ AS +I+ I +A V+Y + + AGT VV AL
Sbjct: 241 GMKMVSAS---SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP 297
Query: 234 LSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGE-TLEKFLGEVEFRNVVFAYPSRPET 292
L + ++ G + + D + E EG+ +E+ G+VEFRNV F YP R +
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGR-DV 356
Query: 293 IIFKDFCLKVPAGNTVAL 310
++ LK+PAG TVAL
Sbjct: 357 PALRNINLKIPAGKTVAL 374
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 175/520 (33%), Positives = 280/520 (53%), Gaps = 10/520 (1%)
Query: 407 LCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICS 466
L GL I +T+ Y ++ + +R+ + ++ V +FD+ S+G + S
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLS 126
Query: 467 RLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKE 526
R+ D+ V S + +V+ +SI F M SW+L+++++ + P+V + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 527 VLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586
+ +SK + + + A + + + + F QE K +K R +G++
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246
Query: 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTT 646
+ I + + S +A + + A ++ +F +++ + + +
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 647 DIAKGSNAVASVFAVLDRDTKINPEDPKGYRP-EKITGHIELQYVHFAYPARPDVIIFKG 705
+G A ++FA+LD + E +G R ++ TG +E + V F YP R +V +
Sbjct: 307 QFQRGMAACQTLFAILDSEQ----EKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRN 361
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
++ I A K+ ALVG+SGSGKSTI LI RFYD +G + +DG D+R Y L SLR VAL
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 766 VSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825
VSQ LF TV NI Y +++ +I EAA+ A A DFI + G DT G+ G+ L
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481
Query: 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885
SGGQ+QRIAIARA+L++ +L+LDEATSALD++SE+ +Q AL+ L RTS+V+AHRLST
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541
Query: 886 IQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925
I+ D I V+E G +VE G+H LLA+ G Y L +Q
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQ--HGVYAQLHKMQ 579
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 21/318 (6%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
+++ L + I +++ +YC + + MR ++ V +FD ST ++S
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ--STGTLLSR 127
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ D+ + S L + A G +I+ F WQ + +
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVG---EGKTLDEFSSALQGSVKLGLKQ 177
+++ M+ + T E+ + + V F G E K D+ S+ ++ Q
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMR-------LQ 240
Query: 178 GLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAV--FAAGTTIVVGGQ--ALGAG 233
G+ AS +I+ I +A V+Y + + AGT VV AL
Sbjct: 241 GMKMVSAS---SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP 297
Query: 234 LSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGE-TLEKFLGEVEFRNVVFAYPSRPET 292
L + ++ G + + D + E EG+ +++ G++EFRNV F YP R E
Sbjct: 298 LKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EV 356
Query: 293 IIFKDFCLKVPAGNTVAL 310
++ LK+PAG TVAL
Sbjct: 357 PALRNINLKIPAGKTVAL 374
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/526 (31%), Positives = 276/526 (52%), Gaps = 8/526 (1%)
Query: 403 RFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSG 462
R GL L+ Y ++ + ++R+ + + + V +FDQ+ S+G
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STG 122
Query: 463 AICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCL 522
+ SR+ D+ V + +V+ +SI T+ SW+L+LV+I V P+V +
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 523 YGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGV 582
+++S+ + A + A + + + + ++ QE K +K + R++ +
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 583 RQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAG 642
+ I + + S + + R + + +F + + +
Sbjct: 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT 302
Query: 643 TMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVII 702
++T++ +G A ++F ++D +T+ D Y E++ G ++++ V F Y + +
Sbjct: 303 SVTSEFQRGMAACQTLFGLMDLETE---RDNGKYEAERVNGEVDVKDVTFTYQGKEKPAL 359
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762
S +I K+ ALVG+SGSGKSTI L RFYD G + +DG D+R Y L +LRRH
Sbjct: 360 -SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822
ALVSQ LF T+ NI Y A + +I +AA+ A+A +FI + +G DT G+ G
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHR 882
LSGGQ+QR+AIARA+L++ VL+LDEATSALD++SE+ +Q AL+ L +T +V+AHR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 883 LSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAE 928
LSTI+ D I V+++G ++E G H LLA+ GAY L +Q E
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQD--GAYAQLHRIQFGE 582
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 123/315 (39%), Gaps = 15/315 (4%)
Query: 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISS 60
MIL L + ++ F +YC + +MR + V +FD ST ++S
Sbjct: 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE--STGGLLSR 127
Query: 61 VSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQXXXXXXXXXXXXXXXXXIYGR 120
++ D+ + S L + + A G + F WQ +
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 121 ILMVLARKMREEYNKANTIVERAISSVRTVYAFVG---EGKTLDEFSSAL-QGSVKLGLK 176
++R M+ + E+ + + V ++ G E K D+ S+++ Q ++KL
Sbjct: 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247
Query: 177 QGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSN 236
Q + I ++ FLA S VF+A ++ +AL + S
Sbjct: 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 237 FKYISEAASAGEHIRDVIKRVPDIDSENMEGE-TLEKFLGEVEFRNVVFAYPSRPETIIF 295
F+ +A + + ++ D+++E G+ E+ GEV+ ++V F Y + E
Sbjct: 308 FQ---RGMAACQTLFGLM----DLETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPAL 359
Query: 296 KDFCLKVPAGNTVAL 310
+P G TVAL
Sbjct: 360 SHVSFSIPQGKTVAL 374
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 268 bits (686), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 179/551 (32%), Positives = 287/551 (52%), Gaps = 17/551 (3%)
Query: 381 FAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRK 440
+A+ +I+ + L +++ T + F I +QY +T + IRK
Sbjct: 39 YAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRK 98
Query: 441 NMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMS 500
+ + + ++ N G + SR+ D + + + + +I IA ++
Sbjct: 99 KLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIM 156
Query: 501 LIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAF 560
+ +L L + + P I+ +Y L++++++ +A E E V + + +F
Sbjct: 157 FFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSF 216
Query: 561 SSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYIN 620
+ ++ K +K ++ + A ++ + G L G I
Sbjct: 217 AIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSIT 276
Query: 621 AKSL--FEIFLVLV--STGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGY 676
+L F +L L+ +++A T+T A ++ VF ++D D I ++ G
Sbjct: 277 VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA----SMDRVFQLIDEDYDI--KNGVGA 330
Query: 677 RPEKIT-GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER 735
+P +I G I++ +V F Y + I K +++IE ++ A VG SG GKST+I LI R
Sbjct: 331 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 736 FYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEII 795
FYD G + IDG +I+ + SLR + LV Q+ LF+ TV+ENI G DE E++
Sbjct: 390 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE-EVV 448
Query: 796 EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855
EAAK ANAHDFI L +GYDT G+RG++LSGGQKQR++IAR L NP +L+LDEATSAL
Sbjct: 449 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 508
Query: 856 DSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPA 915
D +SE ++QEAL+ L RT+++VAHRLSTI + D I V+E G +VE G+H L+AK
Sbjct: 509 DLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK--Q 566
Query: 916 GAYYSLVSLQT 926
GAY L S+Q
Sbjct: 567 GAYEHLYSIQN 577
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 258 bits (660), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 158/492 (32%), Positives = 264/492 (53%), Gaps = 15/492 (3%)
Query: 437 RIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIA 496
R+RK + K+ VG+FD+ G I SR+ D + + +++G+ + + ++ A
Sbjct: 111 RLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 497 FTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAA---EAVSN 553
M ++ L+LV +++ PL ++ +++ + K + Q +L E +S
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLI---TQIVSSQTRKYFYENQRVLGQLNGIIEEDISG 225
Query: 554 LRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRL 613
L I F+ +E+ ++ ++ E+ R+ G + +G+ + + AL +GG L
Sbjct: 226 LTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWL 285
Query: 614 VARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDP 673
+ I ++ + + + I + +F +LD + + +DP
Sbjct: 286 ALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE--KDDP 343
Query: 674 KGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLI 733
++ G IE + V F+Y + V+ K + +I+ + ALVG +GSGK+TI+ L+
Sbjct: 344 DAVELREVRGEIEFKNVWFSYDKKKPVL--KDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 734 ERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESE 793
RFYD +G + +DG DIR SLR + +V Q+ LF+ TV+EN+ YG DE E
Sbjct: 402 MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDE-E 460
Query: 794 IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS 853
I EAAK ++ FI L EGY+T D G LS GQ+Q +AI RA L NP +L+LDEATS
Sbjct: 461 IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520
Query: 854 ALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKG 913
+D+++EK +Q A+ +LM G+TS+++AHRL+TI+N D+I VL G +VE G H+ L+ K
Sbjct: 521 NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK- 579
Query: 914 PAGAYYSLVSLQ 925
G YY L + Q
Sbjct: 580 -RGFYYELFTSQ 590
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 31/294 (10%)
Query: 30 RMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGS 89
R+R + + R VG+FD T +IIS V ND I +VL + F + G+
Sbjct: 111 RLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 90 YIVGFMILWQXXXXXXXXXXXXXXXXXIYGRILMVLARKMREEYNKA----NTIVERAIS 145
I+ F + + +I+ RK E + N I+E IS
Sbjct: 169 VIMMFRV----NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDIS 224
Query: 146 SVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKG-FASGINAITYAIWSFLAYYGSR 204
+ + F E K +++F + K+G K + G +N + ++ ++ +G
Sbjct: 225 GLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGW 284
Query: 205 LVMYHGAKGGAVFAAGTTIVVGG------QALGAGLSNFKYISEAASAGEHIRDVIKRVP 258
L + + GT G + L + F I A ++ E I +++
Sbjct: 285 LALKD------IITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL---- 334
Query: 259 DIDSENMEGETLE--KFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVAL 310
D++ E + + +E + GE+EF+NV F+Y + + KD + G VAL
Sbjct: 335 DLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--VLKDITFHIKPGQKVAL 386
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 254/485 (52%), Gaps = 5/485 (1%)
Query: 426 YFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVAL 485
+ +Y + +R+++ K+L+F + ++ SS + +RL D +++LV + +
Sbjct: 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRI 143
Query: 486 LVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSK 545
+V+ M++ I+ +L+ V+I + P +++ + +K+ ++ DE ++
Sbjct: 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNR 203
Query: 546 LAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVAL 605
+ E + +R + AF +E + KA E+ RR + + L +V+ +
Sbjct: 204 VVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIA 263
Query: 606 AFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRD 665
W+GG LV + S+ L+ + G + I + S + V VL+
Sbjct: 264 VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK 323
Query: 666 TKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSG 725
I D P + G + + V F Y D ++ G + +++ A++G++GSG
Sbjct: 324 PAIEEADNALALP-NVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSG 381
Query: 726 KSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGA 785
KST++ LI R DP +G V++D D+R+ L+ LR H++ V QE LF+ T++EN+ +G
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441
Query: 786 SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAV 845
D D+ EI+EAAK A HDFI L EGYD+ G SGGQKQR++IARA++K P V
Sbjct: 442 EDATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500
Query: 846 LLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905
L+LD+ TS++D +EK + + L+R G T+ ++ ++ T D I VL +G+V G+
Sbjct: 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGT 560
Query: 906 HESLL 910
H+ LL
Sbjct: 561 HKELL 565
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 182/286 (63%), Gaps = 11/286 (3%)
Query: 648 IAKGSNA---VASVFAVLDRDTKINPEDPKGYRPEKIT-GHIELQYVHFAYPARPDVIIF 703
+ +GS+ + ++F +L +T++ +D G P + G IE + VHF+Y + +
Sbjct: 15 VPRGSHMFIDMENMFDLLKEETEV--KDLPGAGPLRFQKGRIEFENVHFSYADGRETL-- 70
Query: 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763
+ S + ++ ALVG SG+GKSTI+ L+ RFYD G ++IDG+DI SLR H+
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 764 ALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823
+V Q+ LF T+ +NI YG ++ E+ AA+AA HD I EGY T G+RGL
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRL 883
+LSGG+KQR+AIAR ILK P ++LLDEATSALD+ +E+ +Q +L ++ RT++VVAHRL
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249
Query: 884 STIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAEQ 929
ST+ N D I V++ G +VE G HE+LL++G G Y + LQ ++
Sbjct: 250 STVVNADQILVIKDGCIVERGRHEALLSRG--GVYADMWQLQQGQE 293
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 207 bits (526), Expect = 3e-53, Method: Composition-based stats.
Identities = 106/249 (42%), Positives = 157/249 (63%), Gaps = 8/249 (3%)
Query: 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737
P + G ++ Q V FAYP RPDV++ +G + + + TALVG +GSGKST+ L++ Y
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
Query: 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEA 797
P G + +DG+ + Y R L R VA V QEP +F +++ENI YG + K EI A
Sbjct: 68 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 127
Query: 798 AKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857
A + AH FI+GL +GYDT + G QLSGGQ+Q +A+ARA+++ P VL+LD+ATSALD+
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 858 QS----EKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKG 913
S E+L+ E+ ER R+ +++ LS ++ D I LE G + E G+H+ L+ K
Sbjct: 188 NSQLQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK- 244
Query: 914 PAGAYYSLV 922
G Y+++V
Sbjct: 245 -KGCYWAMV 252
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVAL 310
G V+F++V FAYP+RP+ ++ + + G AL
Sbjct: 13 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTAL 48
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 165/244 (67%), Gaps = 4/244 (1%)
Query: 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
+IE V+F+YP + + K + I + + ALVG +GSGKSTI L+ RFYD +G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
+KI G+++ Y+ S+R + +V Q+ LF T++ NI YG D DE E+I+A K+A
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDE-EVIKATKSAQL 134
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
+DFI L + +DT G++G++LSGG++QRIAIAR +LK+P +++ DEATS+LDS++E L
Sbjct: 135 YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
Q+A+E L RT +++AHRLSTI + + I +L +G++VE+G+H+ LL G Y + +
Sbjct: 195 QKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN--GEYAEMWN 252
Query: 924 LQTA 927
+Q+
Sbjct: 253 MQSG 256
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 161/244 (65%), Gaps = 3/244 (1%)
Query: 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742
H ++ + + + +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 743 VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAAN 802
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 119
Query: 803 AHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKL 862
AHDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE +
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 863 VQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922
+ + ++ GRT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLY 238
Query: 923 SLQT 926
LQ+
Sbjct: 239 QLQS 242
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 5/243 (2%)
Query: 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I + + F Y +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 118
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+ ++ GRT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 237
Query: 924 LQT 926
LQ+
Sbjct: 238 LQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 5/243 (2%)
Query: 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I + + F Y +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+ ++ GRT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 924 LQT 926
LQ+
Sbjct: 244 LQS 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 161/244 (65%), Gaps = 3/244 (1%)
Query: 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742
H ++ + + + +PD +I +++I+ + +VG++GSGKST+ LI+RFY P G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 743 VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAAN 802
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAG 119
Query: 803 AHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKL 862
AHDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE +
Sbjct: 120 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 179
Query: 863 VQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922
+ + ++ GRT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 180 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLY 238
Query: 923 SLQT 926
LQ+
Sbjct: 239 QLQS 242
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 146/232 (62%), Gaps = 2/232 (0%)
Query: 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 747
++V FAY I + S + A G SG GKSTI L+ERFY P G + ID
Sbjct: 5 RHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 748 GEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFI 807
G+ I + L + R + VSQ+ A+ A T+REN+TYG + ++ + A A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 808 AGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEAL 867
+ + +T G+RG+++SGGQ+QR+AIARA L+NP +L+LDEAT++LDS+SE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 868 ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYY 919
+ LM GRT++V+AHRLSTI + D I +E+G++ G H L+A P A Y
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 199 bits (505), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 160/243 (65%), Gaps = 5/243 (2%)
Query: 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I + + F Y +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ D+ATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+ ++ GRT +++AHRLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 924 LQT 926
LQ+
Sbjct: 244 LQS 246
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 196 bits (499), Expect = 4e-50, Method: Composition-based stats.
Identities = 104/247 (42%), Positives = 148/247 (59%), Gaps = 4/247 (1%)
Query: 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737
P + G ++ Q V FAYP P+V + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEA 797
P G V +DGE + Y L VA V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 798 AKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857
A + AHDFI+G +GYDT G+ G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 858 QSEKLVQEALERL--MVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPA 915
++ VQ L RT +++ H+LS + I L++G V E+G+H L+ +G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 916 GAYYSLV 922
G Y S+V
Sbjct: 248 GCYRSMV 254
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 159/243 (65%), Gaps = 5/243 (2%)
Query: 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I + + F Y +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 2 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 118
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+ ++ GRT +++A RLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 237
Query: 924 LQT 926
LQ+
Sbjct: 238 LQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 159/243 (65%), Gaps = 5/243 (2%)
Query: 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I + + F Y +PD +I +++I+ + +VG+SGSGKST+ LI+RFY P G
Sbjct: 8 ITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
V IDG D+ LRR V +V Q+ L ++ +NI+ A+ + ++I AAK A A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGA 124
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
HDFI+ L EGY+T G++G LSGGQ+QRIAIARA++ NP +L+ DEATSALD +SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 864 QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+ ++ GRT +++A RLST++N D I V+E+G++VE+G H+ LL++ P Y L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLYQ 243
Query: 924 LQT 926
LQ+
Sbjct: 244 LQS 246
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 4/247 (1%)
Query: 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737
P + G ++ Q V FAYP P+V + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEA 797
P G V +DGE + Y L VA V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 798 AKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857
A + AHDFI+G +GYDT G+ G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 858 QSEKLVQEAL--ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPA 915
++ VQ L RT +++ +LS + I L++G V E+G+H L+ +G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 916 GAYYSLV 922
G Y S+V
Sbjct: 248 GCYRSMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 145/247 (58%), Gaps = 4/247 (1%)
Query: 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737
P + G ++ Q V FAYP P+V + +G + + K TALVG +GSGKST+ L++ Y
Sbjct: 10 PLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69
Query: 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEA 797
P G V +DGE + Y L VA V QEP LF + RENI YG + EI
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAV 129
Query: 798 AKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857
A + AHDFI+G +GYDT G+ G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALD+
Sbjct: 130 AMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 858 QSEKLVQEAL--ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPA 915
++ VQ L RT +++ +LS + I L++G V E+G+H L+ +G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-- 247
Query: 916 GAYYSLV 922
G Y S+V
Sbjct: 248 GCYRSMV 254
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY---HLRSL 759
S+++ A + ++G SG+GKST+I + P +G V +DG+++ + L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 760 RRHVALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWC 818
RR + ++ Q L + TV N+ ++D + E + + GL + +D++
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL--MVGRTS 876
+ LSGGQKQR+AIARA+ NP VLL DEATSALD + + + E L+ + +G T
Sbjct: 139 SN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 877 VVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905
+++ H + ++ CD +AV+ G ++E+ +
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGELIEQDT 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 115/210 (54%), Gaps = 13/210 (6%)
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY---HLRSL 759
S+++ A + ++G SG+GKST+I + P +G V +DG+++ + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 760 RRHVALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWC 818
RR + ++ Q L + TV N+ ++D + E + + GL + +D++
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL--MVGRTS 876
+ LSGGQKQR+AIARA+ NP VLL D+ATSALD + + + E L+ + +G T
Sbjct: 162 SN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 877 VVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905
+++ H + ++ CD +AV+ G ++E+ +
Sbjct: 218 LLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 18/227 (7%)
Query: 696 ARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH 755
AR D G + +I A+VGQ G GKS+++ + D ++G V I G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGS------ 67
Query: 756 LRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYD 815
VA V Q+ + ++RENI +G +++E +A + L G
Sbjct: 68 -------VAYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 816 TWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEAL---ERLMV 872
T G++G+ LSGGQKQR+++ARA+ N + L D+ SA+D+ K + E + + ++
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 873 GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYY 919
+T ++V H +S + D+I V+ G++ E GS++ LLA+ A A +
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY---HLRSL 759
S+++ A + ++G SG+GKST+I + P +G V +DG+++ + L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 760 RRHVALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWC 818
RR + + Q L + TV N+ ++D + E + + GL + +D++
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPL--ELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL--MVGRTS 876
+ LSGGQKQR+AIARA+ NP VLL D+ATSALD + + + E L+ + +G T
Sbjct: 162 SN----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 877 VVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905
+++ H ++ CD +AV+ G ++E+ +
Sbjct: 218 LLITHEXDVVKRICDCVAVISNGELIEQDT 247
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 717 ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-V 775
AL+G SGSGKST++ I Y P G + D +D+ L R+V LV Q AL+ +
Sbjct: 33 ALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT--ELPPKDRNVGLVFQNWALYPHM 90
Query: 776 TVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834
TV +NI + K EI + + I L Y W QLSGGQ+QR+A
Sbjct: 91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY-PW------QLSGGQQQRVA 143
Query: 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAH-RLSTIQNCDM 891
IARA++K P VLLLDE S LD+ V+ L+RL +G T+V V H + + D
Sbjct: 144 IARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR 203
Query: 892 IAVLEQGRVVEEGSHESLLAK 912
IAV+ +G +++ G+ + + K
Sbjct: 204 IAVIREGEILQVGTPDEVYYK 224
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 12/213 (5%)
Query: 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763
+G S I + L+G SGSGK+TI+ LI P KG V I G+ R L +R+V
Sbjct: 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRNV 89
Query: 764 ALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822
LV Q ALF +TV +N+++G + E + + A + + + +++
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFG----LREKRVPKDEMDARVRELLRFMR--LESYANRFP 143
Query: 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVA 880
+LSGGQ+QR+A+ARA+ P VLL DE +A+D+Q + ++ + ++ +G TSV V
Sbjct: 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVT 203
Query: 881 H-RLSTIQNCDMIAVLEQGRVVEEGSHESLLAK 912
H + ++ D + VL +G V + G+ E + K
Sbjct: 204 HDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
+ + H P + K ++NIE + A+ G +GSGK++++ LI + +G++K
Sbjct: 41 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDF 806
G V+ SQ + T++ENI +G S DE KA
Sbjct: 98 SG-------------RVSFCSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLQQD 142
Query: 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA 866
I +E +T G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 867 -LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGP 914
+ +LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
+ + H P + K ++NIE + A+ G +GSGK++++ LI + +G++K
Sbjct: 41 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDF 806
G V+ SQ + T++ENI +G S DE KA
Sbjct: 98 SG-------------RVSFCSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLQQD 142
Query: 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA 866
I +E +T G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 867 -LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGP 914
+ +LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 19/220 (8%)
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE--DIRSYHLRSLR 760
KG ++NI+ + TA++G +G GKST+ P G + D + D + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 761 RHVALVSQEP--ALFAVTVRENITYGASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTW 817
+ +V Q+P LF+ +V +++++GA + K+ E EI + A I L + T
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-PTH 142
Query: 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALD----SQSEKLVQEALERLMVG 873
C LS GQK+R+AIA ++ P VL+LDE T+ LD S+ KL+ E + L G
Sbjct: 143 C------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL--G 194
Query: 874 RTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAK 912
T ++ H + + CD + V+++GRV+ +G+ + + A+
Sbjct: 195 ITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
+ + H P + K ++NIE + A+ G +GSGK++++ LI + +G++K
Sbjct: 41 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDF 806
G V+ SQ + T++ENI G S DE KA
Sbjct: 98 SG-------------RVSFCSQFSWIMPGTIKENIIRGVS--YDEYRYKSVVKACQLQQD 142
Query: 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA 866
I +E +T G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 867 -LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGP 914
+ +LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS--YHLRSL 759
+ KG +++I + ++G SGSGKST + + D +G + IDG ++++ +L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 760 RRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWC 818
R V +V Q LF +TV NIT AKA D + GL + +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-GLKDKAHAYP 157
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSV 877
LSGGQ QR+AIARA+ P ++L DE TSALD + V +++L G T V
Sbjct: 158 D----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMV 213
Query: 878 VVAHRLSTIQNC-DMIAVLEQGRVVEEGSHESLLAK 912
VV H + + D + ++ G ++EEG E L +
Sbjct: 214 VVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
+ + H P + K ++NIE + A+ G +GSGK++++ LI + +G++K
Sbjct: 41 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDF 806
G V+ SQ + T++ENI G S DE KA
Sbjct: 98 SG-------------RVSFCSQFSWIMPGTIKENIISGVS--YDEYRYKSVVKACQLQQD 142
Query: 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA 866
I +E +T G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 867 -LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGP 914
+ +LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 251
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 90.5 bits (223), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 10/216 (4%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS--YHLRSL 759
+ KG +++I + ++G SGSGKST + + D +G + IDG ++++ +L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 760 RRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWC 818
R V +V Q LF +TV NIT AKA D + GL + +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-GLKDKAHAYP 136
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSV 877
LSGGQ QR+AIARA+ P ++L DE TSALD + V +++L G T V
Sbjct: 137 D----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMV 192
Query: 878 VVAHRLSTIQNC-DMIAVLEQGRVVEEGSHESLLAK 912
VV H + + D + ++ G ++EEG E L +
Sbjct: 193 VVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 25/233 (10%)
Query: 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762
S+ +E+ + ++G +G+GK+ + LI F+ P G + +DG+D+ L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD--LSPEKHD 73
Query: 763 VALVSQEPALFA-VTVRENITYGASDKI--DESEIIEAAKAANAHDFIAGLSEGYDTWCG 819
+A V Q +LF + V++N+ +G K D +++ A+ +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL------------ 121
Query: 820 DRG-LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVV 878
DR L LSGG++QR+A+ARA++ NP +LLLDE SALD ++++ +E L ++ + +
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS-VLHKKNKLT 180
Query: 879 VAHRLSTIQN-----CDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQT 926
V H ++ Q D IAV+ G++++ G E + K G S V +
Sbjct: 181 VLH-ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766
S+ I + + G +GSGKST++ ++ +P G V DGE + Y +R R++ +
Sbjct: 29 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIR---RNIGIA 85
Query: 767 SQEP--ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
Q P FA V + + + + + + + K A +F+ GL +D++
Sbjct: 86 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK--KAMEFV-GLD--FDSFKDRVPFF 140
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL-MVGRTSVVVAHRL 883
LSGG+K+R+AIA I+ P +L+LDE LD + + + +E+ +G+T ++++H +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 884 STIQN-CDMIAVLEQGRVVEEGSHESLLAK 912
T+ N D + VLE+G+ V +G+ L K
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766
S+ I + + G +GSGKST++ ++ +P G V DGE + Y +R R++ +
Sbjct: 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIR---RNIGIA 83
Query: 767 SQEP--ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
Q P FA V + + + + + + + K A +F+ GL +D++
Sbjct: 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK--KAMEFV-GLD--FDSFKDRVPFF 138
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL-MVGRTSVVVAHRL 883
LSGG+K+R+AIA I+ P +L+LDE LD + + + +E+ +G+T ++++H +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 884 STIQN-CDMIAVLEQGRVVEEGSHESLLAK 912
T+ N D + VLE+G+ V +G+ L K
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 24/215 (11%)
Query: 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764
G S ++ + AL+G SG GK+T + ++ Y P G + D D+ + R V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVG 78
Query: 765 LVSQEPALFA-VTVRENITYG------ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTW 817
+V Q AL+ +TV ENI + + D++ E ++E A+ D
Sbjct: 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEV-EKRVVEIARKL-----------LIDNL 126
Query: 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRT 875
+ QLSGGQ+QR+A+ARA++K P VLL DE S LD+ +++ ++ L +G T
Sbjct: 127 LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 876 SVVVAH-RLSTIQNCDMIAVLEQGRVVEEGSHESL 909
SV V H + + IAV QG++V+ G+ + +
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 20/229 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
+ + H P + K ++NIE + A+ G +GSGK++++ LI + +G++K
Sbjct: 41 VSFSHLCLVGNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH 97
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDF 806
G V+ SQ + T++ENI G S DE KA
Sbjct: 98 SG-------------RVSFCSQFSWIMPGTIKENII-GVS--YDEYRYKSVVKACQLQQD 141
Query: 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA 866
I +E +T G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E+ V E+
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 867 -LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGP 914
+ +LM +T ++V ++ ++ D I +L QG G+ L + P
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 250
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 26/235 (11%)
Query: 685 IELQYVHFAYPARPDVII-FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I+L+ V Y ++I K ++NI+ + +++G SGSGKST++ +I P +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 744 VKIDG---EDIRSYHLRSLRR-HVALVSQEPALFAV-TVRENITY-------GA-SDKID 790
V ID D+ L +RR + V Q+ L + T EN+ GA S +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 791 ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850
+E K A + A + QLSGGQ+QR+AIARA+ NP ++L D+
Sbjct: 122 RKRALECLKMAELEERFAN----------HKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 851 ATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903
T ALDS++ + + + L++L G+T VVV H ++ + + I L+ G V E
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 86.3 bits (212), Expect = 8e-17, Method: Composition-based stats.
Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 26/235 (11%)
Query: 685 IELQYVHFAYPARPDVII-FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
I+L+ V Y ++I K ++NI+ + ++ G SGSGKST + +I P +G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 744 VKIDG---EDIRSYHLRSLRR-HVALVSQEPALFAV-TVRENI------TYGASDKIDE- 791
V ID D+ L +RR + V Q+ L + T EN+ Y + +E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 792 -SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850
+E K A + A + QLSGGQ+QR+AIARA+ NP ++L DE
Sbjct: 122 RKRALECLKXAELEERFAN----------HKPNQLSGGQQQRVAIARALANNPPIILADE 171
Query: 851 ATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903
T ALDS++ + + + L++L G+T VVV H ++ + + I L+ G V E
Sbjct: 172 PTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%)
Query: 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK 741
G L + +F+ P + K + IE + A+ G +G+GK++++ +I +P +
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 742 GVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAA 801
G +K G ++ SQ + T++ENI G S DE KA
Sbjct: 93 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVS--YDEYRYRSVIKAC 137
Query: 802 NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861
+ I+ +E + G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK
Sbjct: 138 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 197
Query: 862 LVQEA-LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898
+ E+ + +LM +T ++V ++ ++ D I +L +G
Sbjct: 198 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
+ K + IE + A+ G +G+GK++++ +I +P +G +K G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ SQ + T++ENI +G S DE KA + I+ +E + G+
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLMVGRTSVVVA 880
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + +LM +T ++V
Sbjct: 140 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 199
Query: 881 HRLSTIQNCDMIAVLEQG 898
++ ++ D I +L +G
Sbjct: 200 SKMEHLKKADKILILHEG 217
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 706 FSINIEAEKS---TALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762
F +N++ E L+G +G+GKS + LI P +G V+++G DI L RR
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRG 71
Query: 763 VALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
+ V Q+ ALF ++V NI YG + + A G++ D +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK----LGIAHLLDR----K 123
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAH 881
+LSGG++QR+A+ARA++ P +LLLDE SA+D +++ ++ E L R + V + H
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILH 182
Query: 882 ----RLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911
+ D +AV+ GR+VE+G + L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 99/199 (49%), Gaps = 3/199 (1%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
I + S +I + L+G++GSGKST++ R + +G ++IDG S L R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ Q+ +F+ T R+N+ A+ + EI + A I D D
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHS--DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAH 881
G LS G KQ + +AR++L +LLLDE ++ LD + ++++ L++ T ++
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
Query: 882 RLSTIQNCDMIAVLEQGRV 900
R+ + CD V+E+ +V
Sbjct: 213 RIEAMLECDQFLVIEENKV 231
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
+ K + IE + A+ G +G+GK++++ +I +P +G +K G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ SQ + T++ENI +G S DE KA + I+ +E + G+
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLMVGRTSVVVA 880
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + +LM +T ++V
Sbjct: 128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 187
Query: 881 HRLSTIQNCDMIAVLEQG 898
++ ++ D I +L +G
Sbjct: 188 SKMEHLKKADKILILHEG 205
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 35/242 (14%)
Query: 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---L 756
V+ +INIE + ++G SG+GK+T + +I P G + D + S +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 757 RSLRRHVALVSQEPALFA-VTVRENITYGASD-KIDESEII----EAAKAANAHDFIAGL 810
R + +V Q AL+ +T ENI + ++ K+ + EI E AK + H +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ----SEKLVQEA 866
+LSGGQ+QR+A+ARA++K+P++LLLDE S LD++ + LV+E
Sbjct: 138 PR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 867 LERLMVGRTSVVVAHRLSTI-QNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925
RL G T +VV+H + I D + VL +G++V+ G E L Y + VS+Q
Sbjct: 187 QSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQ 236
Query: 926 TA 927
A
Sbjct: 237 VA 238
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 26/235 (11%)
Query: 685 IELQYVHFAYPARPDVI-IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
++L+ V Y ++I K ++NI+ + +++G SGSGKST++ +I P +G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 744 VKIDG---EDIRSYHLRSLRR-HVALVSQEPALFAV-TVRENITY-------GA-SDKID 790
V ID D+ L +RR + V Q+ L + T EN+ GA S +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 791 ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850
+E K A E + + + QLSGGQ+QR+AIARA+ NP ++L D+
Sbjct: 122 RKRALECLKMA----------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 851 ATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903
T ALDS++ + + + L++L G+T VVV H ++ + + I L+ G V E
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 20/218 (9%)
Query: 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK 741
G L + +F+ P + K + IE + A+ G +G+GK++++ +I +P +
Sbjct: 36 NGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 742 GVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAA 801
G +K G ++ SQ + T++ENI G S DE KA
Sbjct: 93 GKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKAC 136
Query: 802 NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861
+ I+ +E + G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK
Sbjct: 137 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196
Query: 862 LVQEA-LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898
+ E+ + +LM +T ++V ++ ++ D I +L +G
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 20/218 (9%)
Query: 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK 741
G L + +F+ P + K + IE + A+ G +G+GK++++ +I +P +
Sbjct: 36 NGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92
Query: 742 GVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAA 801
G +K G ++ SQ + T++ENI G S DE KA
Sbjct: 93 GKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS--YDEYRYRSVIKAC 136
Query: 802 NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861
+ I+ +E + G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK
Sbjct: 137 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196
Query: 862 LVQEA-LERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898
+ E+ + +LM +T ++V ++ ++ D I +L +G
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 35/242 (14%)
Query: 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---L 756
V+ +INIE + ++G SG+GK+T + +I P G + D + S +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 757 RSLRRHVALVSQEPALFA-VTVRENITYGASD-KIDESEII----EAAKAANAHDFIAGL 810
R + +V Q AL+ +T ENI + ++ K+ + EI E AK + H +
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ----SEKLVQEA 866
+LSG Q+QR+A+ARA++K+P++LLLDE S LD++ + LV+E
Sbjct: 138 PR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 867 LERLMVGRTSVVVAHRLSTI-QNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925
RL G T +VV+H + I D + VL +G++V+ G E L Y + VS+Q
Sbjct: 187 QSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQ 236
Query: 926 TA 927
A
Sbjct: 237 VA 238
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
+ K + IE + A+ G +G+GK++++ +I +P +G +K G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ SQ + T++ENI +G S DE KA + I+ +E + G+
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLMVGRTSVVVA 880
G+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + E+ + +LM +T ++V
Sbjct: 158 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 217
Query: 881 HRLSTIQNCDMIAVLEQG 898
++ ++ D I +L +G
Sbjct: 218 SKMEHLKKADKILILHEG 235
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 17/198 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
+ K + IE + A+ G +G+GK++++ +I +P +G +K G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ SQ + T++ENI G S DE KA + I+ +E + G+
Sbjct: 70 RISFCSQFSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLMVGRTSVVVA 880
G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + +LM +T ++V
Sbjct: 127 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 186
Query: 881 HRLSTIQNCDMIAVLEQG 898
++ ++ D I +L +G
Sbjct: 187 SKMEHLKKADKILILHEG 204
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 17/231 (7%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV----KIDGEDIRSY 754
+V + S+ ++ + L+G SG GK+T + +I +P +G + K+ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 755 HLRSLRRHVALVSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSE 812
+ R +A+V Q AL+ +TV +NI + K+ EI + + + GL+E
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE---LLGLTE 131
Query: 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL-- 870
+ +LSGGQ+QR+A+ RAI++ P V L+DE S LD++ ++ L++L
Sbjct: 132 ----LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 871 MVGRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920
+G T++ V H ++ + D IAV+ +G + + GS + + K PA + +
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK-PANTFVA 237
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743
IEL V F Y + K + E K +VG++GSGK+T++ ++ G
Sbjct: 11 RIELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGE 66
Query: 744 VKIDGEDIRSYHLRSLRRHVALVSQEPA--LFAVTVRENITYGAS-DKIDESEIIEAAKA 800
+ +DG + LR ++V V Q P+ + TV E++ + +DESE+ + K
Sbjct: 67 IFLDGSPADPFLLR---KNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 801 ANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSE 860
++GL+ L LSGGQKQR+AIA + ++ L LDE S LD S+
Sbjct: 124 VLELVGLSGLAAA-------DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 861 KLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAK 912
+ + + LE L G+ ++V H L + + D I + G + GS E + +
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 23/231 (9%)
Query: 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGEDI---RSYHLR 757
G S++I TA+VG+S SGKSTII + + P L G V G+D+ R LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 758 SLR-RHVALVSQ------EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGL 810
+R + +ALV Q P + + ++ + SE+IE A + + +
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKAS-----EKLRMV 140
Query: 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALD--SQSEKLVQEALE 868
+ LQLSGG KQR+ IA A+L +P VL+LDE TSALD +Q+ +
Sbjct: 141 RLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKEL 200
Query: 869 RLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAY 918
+ M+ T + V H ++ D +AV+ G +VE S + K P Y
Sbjct: 201 KKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIF-KNPLHPY 250
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 14/205 (6%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
++ I+ + L+G SG GK+T + +I +P +G + D+ +L R++++
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV--TYLPPKDRNISM 88
Query: 766 VSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823
V Q A++ +TV ENI + K + EI + + A I L Y
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAH 881
QLSGGQ+QR+A+ARAI+ P VLL+DE S LD++ ++ +++L + T++ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 882 -RLSTIQNCDMIAVLEQGRVVEEGS 905
++ + D IAV+ +G++++ GS
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 14/205 (6%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
++ I+ + L+G SG GK+T + +I +P +G + D+ +L R++++
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV--TYLPPKDRNISM 87
Query: 766 VSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823
V Q A++ +TV ENI + K + EI + + A I L Y
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAH 881
QLSGGQ+QR+A+ARAI+ P VLL+DE S LD++ ++ +++L + T++ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 882 -RLSTIQNCDMIAVLEQGRVVEEGS 905
++ + D IAV+ +G++++ GS
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 28/230 (12%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--------- 752
+ KG S+ A +++G SGSGKST + I P +G + ++G++I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 753 ----SYHLRSLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFI 807
LR LR + +V Q L++ +TV EN+ + S+ +A + A +
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKH-DARERALKYLAK 139
Query: 808 AGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEAL 867
G+ E G + LSGGQ+QR++IARA+ P VLL DE TSALD + LV E L
Sbjct: 140 VGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVL 193
Query: 868 ERLMV-----GRTSVVVAHRLSTIQNCDM-IAVLEQGRVVEEGSHESLLA 911
R+M G+T VVV H + ++ + L QG++ EEG E +
Sbjct: 194 -RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 24/234 (10%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID----GEDIRSY 754
DV K S+ I+ + L+G SG GK+T + I +P +G + I+ + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 755 HLRSLRRHVALVSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSE 812
+ R VA V Q AL+ TV +NI + K+ + EI + + GL+E
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAE---XLGLTE 134
Query: 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL-- 870
+ +LSGGQ+QR+A+ RAI++ P V L DE S LD++ + L++L
Sbjct: 135 ----LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 871 MVGRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923
+G T++ V H ++ D IAV +G + + G+ P YY V+
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT--------PDEVYYKPVN 236
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 18/215 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
I KG S IE + L+G +G+GK+T + +I P G+V + G+++ +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 762 HVALVSQEPALFAVT-----VRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDT 816
++ + +E + +R + AS + E++E A IAGL E
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE------IAGLGE---- 138
Query: 817 WCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL-MVGRT 875
DR S G +++ IARA++ NP + +LDE TS LD + + V++ L++ G T
Sbjct: 139 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 876 SVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909
+V +H + ++ CD IA++ G +VE G+ E L
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI--RSYHL 756
+ + S++++ + ++G SG GK+T++ + F P G + + G+ I ++ +L
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 757 RSLRRHVALVSQEPALFA-VTVRENITYGASD----KIDESEIIEAAKAANAHDFIAGLS 811
R + + QE LF +TV NI YG + E + IEA + G+S
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE------LTGIS 129
Query: 812 EGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871
E G +LSGGQ+QR A+ARA+ +P ++LLDE SALD Q + ++E + +
Sbjct: 130 E----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
Query: 872 V--GRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEGSHESL 909
G+++V V+H R +Q D IAV++QGR+++ S L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 15/224 (6%)
Query: 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744
++LQ V A+ +V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 745 KIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANA 803
I GE R R V +V Q AL+ ++V EN+++G + E+I + N
Sbjct: 61 FI-GEK-RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQ 116
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
+ L+ D + LSGGQ+QR+AI R ++ P+V LLDE S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 864 QEALERLM--VGRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEG 904
+ + RL +GRT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 15/224 (6%)
Query: 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744
++LQ V A+ +V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 745 KIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANA 803
I GE R R V +V Q AL+ ++V EN+++G + E+I + N
Sbjct: 61 FI-GEK-RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQ 116
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
+ L+ D + LSGGQ+QR+AI R ++ P+V LLDE S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 864 QEALERLM--VGRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEG 904
+ + RL +GRT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH-V 763
G SI++ T ++G +GSGKST+I +I F +G V + +DI + L + +
Sbjct: 25 GVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 764 ALVSQEP-ALFAVTVRENITYGASDKID--------------ESEIIEAAKAANAHDFIA 808
Q P L +TV EN+ G + + E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 809 GLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL-DSQSEKLVQEAL 867
LS YD G +LSGGQ + + I RA++ NP ++++DE + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 868 ERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907
E G T +++ HRL + N D + V+ G+++ EG E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH-V 763
G SI++ T ++G +GSGKST+I +I F +G V + +DI + L + +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 764 ALVSQEP-ALFAVTVRENITYG----ASDKID----------ESEIIEAAKAANAHDFIA 808
Q P L +TV EN+ G ++ E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 809 GLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL-DSQSEKLVQEAL 867
LS YD G +LSGGQ + + I RA++ NP ++++DE + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 868 ERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907
E G T +++ HRL + N D + V+ G+++ EG E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 17/198 (8%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761
+ K + IE + A+ G +G+GK++++ +I +P +G +K G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821
++ SQ + T++ENI G S DE KA + I+ +E + G+
Sbjct: 100 RISFCSQFSWIMPGTIKENII-GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLMVGRTSVVVA 880
G+ LS GQ+ +I++ARA+ K+ + LLD LD +EK + E+ + +LM +T ++V
Sbjct: 157 GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVT 216
Query: 881 HRLSTIQNCDMIAVLEQG 898
++ ++ D I +L +G
Sbjct: 217 SKMEHLKKADKILILHEG 234
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH-V 763
G SI++ T ++G +GSGKST+I +I F +G V + +DI + L + +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 764 ALVSQEP-ALFAVTVRENITYGASDKID--------------ESEIIEAAKAANAHDFIA 808
Q P L +TV EN+ G + + E E++E KA +F+
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE--KAFKILEFLK 142
Query: 809 GLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL-DSQSEKLVQEAL 867
LS YD G +LSGGQ + + I RA++ NP ++++D+ + + + + L
Sbjct: 143 -LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 868 ERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907
E G T +++ HRL + N D + V+ G+++ EG E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 15/224 (6%)
Query: 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744
++LQ V A+ +V++ K +++I + VG SG GKST++ +I G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 745 KIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANA 803
I GE R R V +V Q AL+ ++V EN+++G + E+I + N
Sbjct: 61 FI-GEK-RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVIN--QRVNQ 116
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
+ L+ D + LSGGQ+QR+AI R ++ P+V LLD+ S LD+ +
Sbjct: 117 VAEVLQLAHLLDR----KPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM 172
Query: 864 QEALERLM--VGRTSVVVAH-RLSTIQNCDMIAVLEQGRVVEEG 904
+ + RL +GRT + V H ++ + D I VL+ GRV + G
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 19/234 (8%)
Query: 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746
L+ H Y + +I S++I + + A++G +G+GKST++ L+ + P G +
Sbjct: 12 LEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 747 DGEDIRSYHLRSLRRHVALVSQEPAL-FAVTVRENITYGASDKIDESEIIEAAKAANAHD 805
G+++ S+ ++L R A++ Q L F +V E I G + + + D
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTD 130
Query: 806 FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK------NPAVLLLDEATSALDSQS 859
+A Y LSGG++QR+ +AR + + P L LDE TSALD
Sbjct: 131 CLALAQRDYRV--------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYH 182
Query: 860 EKLVQEALERLMVGRTSVV--VAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLL 910
++ L +L V V H L+ D I +L QG++V G+ E +L
Sbjct: 183 QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-- 759
I KG S++++ + +++G SGSGKST++ ++ P +G V ++G+++ + + L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 760 --RRHVALVSQEPALFA-VTVRENI-----TYGASDKIDESEIIEAAKAANAHDFIAGLS 811
R + V Q L +T EN+ G K +A +++ LS
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK----------EAKERGEYL--LS 126
Query: 812 E-GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL 870
E G + +LSGG++QR+AIARA+ P +L DE T LDS + K V + ++
Sbjct: 127 ELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 871 MVGRTSVV-VAHRLSTIQNCDMIAVLEQGRVVEE 903
G TS+V V H + ++ G+VV E
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744
+E+Q +H Y A + KG + + + L+G +G+GK+T + I KG +
Sbjct: 7 LEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 745 KIDGEDIRSYHLRSLRRH-VALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAAN 802
+G+DI + + R +ALV + +F +TV EN+ GA ++ D+ I
Sbjct: 64 IFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGI------KR 117
Query: 803 AHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKL 862
++I L G LSGG++Q +AI RA+ P +L DE + L
Sbjct: 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 863 VQEALERLMVGRTSVVVAHR--LSTIQNCDMIAVLEQGRVVEEGSHESLL 910
V E ++++ T++++ + L ++ VLE G++V EG LL
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 22/215 (10%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
S + A + LVG +G+GKST++ + KG ++ G+ + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 766 VSQEPAL-FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
+SQ+ FA V +T DK +E++ A A D G S Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTN----------Q 126
Query: 825 LSGGQKQRIAIARAILK-----NPA--VLLLDEATSALDSQSEKLVQEALERL-MVGRTS 876
LSGG+ QR+ +A +L+ NPA +LLLD+ ++LD + + + L L G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 877 VVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLL 910
V+ +H L+ T+++ +L+ G+++ G E +L
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
S + A + LVG +G+GKST++ + KG ++ G+ + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 766 VSQEPAL-FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
+SQ+ FA V +T DK +E++ A A D G S Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTN----------Q 126
Query: 825 LSGGQKQRIAIARAILK-----NPA--VLLLDEATSALDSQSEKLVQEALERL-MVGRTS 876
LSGG+ QR+ +A +L+ NPA +LLLD+ +LD + + + L L G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAI 186
Query: 877 VVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLL 910
V+ +H L+ T+++ +L+ G+++ G E +L
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
S + A + LVG +G+GKST++ KG ++ G+ + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 766 VSQEPAL-FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
+SQ+ FA V +T DK +E++ A A D G S Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTN----------Q 126
Query: 825 LSGGQKQRIAIARAILK-----NPA--VLLLDEATSALDSQSEKLVQEALERL-MVGRTS 876
LSGG+ QR+ +A +L+ NPA +LLLDE ++LD + + + L L G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAI 186
Query: 877 VVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLL 910
V +H L+ T+++ +L+ G+ + G E +L
Sbjct: 187 VXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
S + A + LVG +G+GKST++ KG ++ G+ + ++ L H A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG-KGSIQFAGQPLEAWSATKLALHRAY 77
Query: 766 VSQEPAL-FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824
+SQ+ FA V +T DK +E++ A A D G S Q
Sbjct: 78 LSQQQTPPFATPVWHYLTLHQHDKT-RTELLNDVAGALALDDKLGRSTN----------Q 126
Query: 825 LSGGQKQRIAIARAILK-----NPA--VLLLDEATSALDSQSEKLVQEALERL-MVGRTS 876
LSGG+ QR+ +A +L+ NPA +LLLDE ++LD + + + L L G
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAI 186
Query: 877 VVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLL 910
V +H L+ T+++ +L+ G+ + G E +L
Sbjct: 187 VXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744
+ ++ + F Y A + +F+ + ++ A++GQ+G GKST++ L+ + P++G +
Sbjct: 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 745 KIDGEDIRSYHLRSLRRHVALVSQE-PALFAVTVRENITYGASDKIDESEIIEAAKAANA 803
++ + + V Q + FA +V + + G S I+ +
Sbjct: 63 EV-------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN------TFAKPKS 103
Query: 804 HDFIAGLSEGYD----TWCGDRGL-QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ 858
HD+ + + D T R LSGGQ+Q I IARAI ++LLDE TSALD
Sbjct: 104 HDYQVAM-QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 859 SEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAV 894
++ +V L L + VV +T Q ++A+
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVV---FTTHQPNQVVAI 195
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLI--ERFYDPLKGVVKIDGEDIRSYH- 755
D I +G S+++ + A++G +GSGKST+ + Y+ G V+ G+D+ +
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 756 --------LRSLRRHVALVSQEPALFAVT----VRENITYGASDKIDESEIIEAAKAANA 803
+ + V + F T VR D+ D +++E
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK----- 127
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
IA L D + SGG+K+R I + + P + +LDE+ S LD + K+V
Sbjct: 128 ---IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 184
Query: 864 QEALERLMVGRTS-VVVAH--RLSTIQNCDMIAVLEQGRVVEEGS 905
+ + L G+ S ++V H R+ D + VL QGR+V+ G
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLI--ERFYDPLKGVVKIDGEDIRSYH- 755
D I +G S+++ + A++G +GSGKST+ + Y+ G V+ G+D+ +
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 756 --------LRSLRRHVALVSQEPALFAVT----VRENITYGASDKIDESEIIEAAKAANA 803
+ + V + F T VR D+ D +++E
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK----- 146
Query: 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863
IA L D + SGG+K+R I + + P + +LDE+ S LD + K+V
Sbjct: 147 ---IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
Query: 864 QEALERLMVGRTS-VVVAH--RLSTIQNCDMIAVLEQGRVVEEGS 905
+ + L G+ S ++V H R+ D + VL QGR+V+ G
Sbjct: 204 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 15/220 (6%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSL 759
I K S I L G +G+GK+T++ ++ + G V + G+ Y ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 760 RRHVALVSQ---EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFI--AGLSEGY 814
R+H+ VS E V + + GA I + I+ AH + G S
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 815 DTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGR 874
+ G LS G+KQR+ IARA+ P VL+LDE + LD + + + L+ L
Sbjct: 156 QQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 875 TS---VVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLL 910
+ + V H + I N I +L+ G+ +++G+ E +L
Sbjct: 212 PTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 65/269 (24%)
Query: 673 PKGYRP---EKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKST------------- 716
PKG R E + G+++ + V F RP I F S ++ E+ T
Sbjct: 300 PKGTRNGINEFLQGYLKDENVRF----RPYEIRFTKLSERVDVERETLVEYPRLVKDYGS 355
Query: 717 ----------------ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR 760
+VG +G GK+T + ++ +P +G V+ D
Sbjct: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------------- 402
Query: 761 RHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820
V+ +P E Y KID S++ + G+ + YD D
Sbjct: 403 ---LTVAYKPQYIKAEY-EGTVYELLSKIDSSKLNSNFYKTELLKPL-GIIDLYDRNVED 457
Query: 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG--RTSVV 878
LSGG+ QR+AIA +L++ + LLDE ++ LD + V A+ LM +T++V
Sbjct: 458 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 879 VAHRLSTIQNC-DMIAVLEQGRVVEEGSH 906
V H + I D + V E E G H
Sbjct: 514 VEHDVLMIDYVSDRLIVFEG----EPGRH 538
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 820 DRGL-QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSV 877
DR L QLSGG+ QR+AIA A+L+ DE +S LD + V + RL G+ +
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 878 VVAHRLSTIQ 887
VV H L+ +
Sbjct: 269 VVEHDLAVLD 278
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 65/269 (24%)
Query: 673 PKGYRP---EKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKST------------- 716
PKG R E + G+++ + V F RP I F S ++ E+ T
Sbjct: 314 PKGTRNGINEFLQGYLKDENVRF----RPYEIRFTKLSERVDVERETLVEYPRLVKDYGS 369
Query: 717 ----------------ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR 760
+VG +G GK+T + ++ +P +G V+ D
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD------------- 416
Query: 761 RHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820
V+ +P E Y KID S++ + G+ + YD D
Sbjct: 417 ---LTVAYKPQYIKAEY-EGTVYELLSKIDSSKLNSNFYKTELLKPL-GIIDLYDRNVED 471
Query: 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG--RTSVV 878
LSGG+ QR+AIA +L++ + LLDE ++ LD + V A+ LM +T++V
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 879 VAHRLSTIQNC-DMIAVLEQGRVVEEGSH 906
V H + I D + V E E G H
Sbjct: 528 VEHDVLMIDYVSDRLIVFEG----EPGRH 552
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 820 DRGL-QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSV 877
DR L QLSGG+ QR+AIA A+L+ DE +S LD + V + RL G+ +
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 878 VVAHRLSTIQ 887
VV H L+ +
Sbjct: 283 VVEHDLAVLD 292
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGG K ++A+ARA+L+N +LLLDE T+ LD+ + + L G TS+ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 885 TIQN-CDMIAVLEQGRVVE-EGSHESLLAKGPAGAYYSLVS 923
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 647
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 885 TIQN-CDMIAVLEQGRVVEEGSH 906
+N + + ++ GR+ G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGG K ++A+ARA+L+N +LLLDE T+ LD+ + + L G TS+ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 885 TIQN-CDMIAVLEQGRVVE-EGSHESLLAKGPAGAYYSLVS 923
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 647
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 885 TIQN-CDMIAVLEQGRVVEEGSH 906
+N + + ++ GR G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGG K ++A+ARA+L+N +LLLDE T+ LD+ + + L G TS+ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 600
Query: 885 TIQN-CDMIAVLEQGRVVE-EGSHESLLAKGPAGAYYSLVS 923
+ N C+ I E ++ + +G+ + K PA Y +S
Sbjct: 601 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELS 641
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884
LSGGQK ++ +A + P +++LDE T+ LD S + +AL+ G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 885 TIQN-CDMIAVLEQGRVVEEGSH 906
+N + + ++ GR G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 819 GDRGLQLSGGQKQRIAIARAILKNPA---VLLLDEATSALDSQSEKLVQEALERLM-VGR 874
G LSGG+ QRI +A + K + +LDE T L + + + E L RL+ G
Sbjct: 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859
Query: 875 TSVVVAHRLSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGP 914
T +V+ H L I+N D I L E G +V G+ E +AK P
Sbjct: 860 TVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEE-IAKNP 904
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 825 LSGGQKQRIAIARAILK--NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAH 881
LSGG+ QRI +A I + +LDE T L + + + + L++L +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 882 RLSTIQNCDMI------AVLEQGRVVEEGSHESLLAKGP----AGAYYS 920
I+N D I GRVV +G+ + LL K P G Y S
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL-KNPDSSLTGEYLS 572
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH--L 756
D + + ++ IE G +G GK+T++ I + PLKG + +G I +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 757 RSLRRHVAL---VSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEG 813
L + + +S E L AV YG K++++EI++A ++ D L E
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVAS----LYGV--KVNKNEIMDALESVEVLDLKKKLGE- 133
Query: 814 YDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG 873
LS G +R+ +A +L N + +LD+ A+D S+ V +++ ++
Sbjct: 134 -----------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182
Query: 874 RTSVVVAHRLSTIQNCDM 891
+ V+++ R + CD+
Sbjct: 183 KGIVIISSR-EELSYCDV 199
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLI--ERFYDPLKGVVKIDGEDIRSYHL-RS 758
I KG ++ + + AL+G +G+GKST+ ++ + Y +G + +DGE+I
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 759 LRRHVALVSQEPA-LFAVTVRENITYGASDKID-ESEIIE----AAKAANAHDFIAGLSE 812
R+ + L Q P + VT+ + K+ E + E KA D+ E
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW----DE 133
Query: 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV 872
Y + + G SGG+K+R I + ++ P +LDE S LD + K+V + M
Sbjct: 134 SYLSRYLNEGF--SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMR 190
Query: 873 GRT--SVVVAH--RLSTIQNCDMIAVLEQGRVVEEGSHE---SLLAKG 913
G ++V+ H R+ D + V+ GRVV G E L AKG
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHR 882
LSGG+ QR+AIA A+L+N DE +S LD + A+ RL G++ +VV H
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217
Query: 883 LSTIQN-CDMIAVL 895
L+ + D+I V+
Sbjct: 218 LAVLDYLSDIIHVV 231
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 37/189 (19%)
Query: 717 ALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVT 776
+VG +G GK+T + + +P +G ++ D V+ +P
Sbjct: 316 GIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD----------------LTVAYKPQYIKAD 359
Query: 777 VRENITYGASDKIDESEIIEAAKAANAHDFIA------GLSEGYDTWCGDRGLQLSGGQK 830
E Y KID S++ N++ + G+ + YD +LSGG+
Sbjct: 360 Y-EGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN----ELSGGEL 407
Query: 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG--RTSVVVAHRLSTIQN 888
QR+AIA +L++ + LLDE ++ LD + V A+ L +T++VV H + I
Sbjct: 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDY 467
Query: 889 C-DMIAVLE 896
D + V E
Sbjct: 468 VSDRLXVFE 476
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 825 LSGGQKQRIAIARAILKNPAVLL--LDEATSALDSQSEKLVQEALERLM-VGRTSVVVAH 881
LSGG+ QRI +A I +L LDE + L + + + E L RL +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 882 RLSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGPA--GAYYS 920
TI++ D I + GR+V G ++ LL + GAY S
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLS 628
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 825 LSGGQKQRIAIARAILKNPA---VLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVA 880
LSGG+ QR+ +A + K V +LDE T+ L + + + L+ G T +V+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 881 HRLSTIQNCDMI 892
H L I+ D I
Sbjct: 924 HNLDVIKTSDWI 935
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 717 ALVGQSGSGKSTIIGL-----IERFYDPLKGVVKID------GEDIRSYHLRSLRRHVAL 765
++G++G GK+T++ + I F DP V K + G++I +Y + +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 766 VSQ------EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCG 819
V + TV E +T KIDE D + L + W
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILT-----KIDER---------GKKDEVKELLNMTNLWNK 134
Query: 820 DRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVV 879
D + LSGG QR+ +A ++L+ V + D+ +S LD + + +A+ L+ + +VV
Sbjct: 135 DANI-LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 880 AHRLSTIQN-CDMIAVL 895
H L + D+I ++
Sbjct: 194 DHDLIVLDYLTDLIHII 210
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSV--VVAH 881
LSGG+ Q++ IA + K + +LD+ +S LD + +V +A++R+ R +V ++ H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 882 RLS 884
LS
Sbjct: 445 DLS 447
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 30/169 (17%)
Query: 718 LVGQSGSGKSTIIGLIERFYDPLKGVVKID-GEDIRSYHLRSLRRHVALVSQEPALFAVT 776
++G++G+GK+T+I L L G +K D G+DI ++ + +A F T
Sbjct: 383 MMGENGTGKTTLIKL-------LAGALKPDEGQDIPKLNVSMKPQKIA------PKFPGT 429
Query: 777 VRENITYGASDKIDESEI-IEAAKAANAHDFIAGLSEGYDTWCGDRGLQ-LSGGQKQRIA 834
VR+ + + + K D I D+ +Q LSGG+ QR+A
Sbjct: 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII------------DQEVQHLSGGELQRVA 477
Query: 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAH 881
I A+ + L+DE ++ LDS+ + + + R ++ +T+ +V H
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVV-VAHR 882
+LSGG+ QR AI + ++ V + DE +S LD + + + L+ V+ V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 883 LSTI 886
LS +
Sbjct: 281 LSVL 284
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 803 AHDFIAGLS---EGYDTW---------CGDRGLQLSGGQKQRIAIA---RAILKNPAVLL 847
AHDF A S DT G +LSGG+ QRI +A R + V +
Sbjct: 697 AHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYV 756
Query: 848 LDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMI------AVLEQGRV 900
LDE T+ L + +Q L +L+ G T + V H++ + D + A + GR+
Sbjct: 757 LDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRL 816
Query: 901 VEEGS 905
V +G+
Sbjct: 817 VAQGT 821
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 825 LSGGQKQRIAIARAILKN--PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSV-VVAH 881
LS G+ QR+ +A + N V +LDE ++ L + + ALE L G S+ VV H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 882 RLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAG 916
L I+ D + ++ G E E L + P G
Sbjct: 440 DLDVIRRADWL--VDVGPEAGEKGGEILYSGPPEG 472
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 707 SINIEAEKSTALV-GQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765
+IN+E ++ G +GSGK+T++ I P G + I+G ++R +R ++
Sbjct: 23 NINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK-----IRNYIRY 76
Query: 766 VSQEPALFAVTVREN---ITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822
+ P + + V N Y +D +E KA + I R
Sbjct: 77 STNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RRK 125
Query: 823 L-QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAH 881
L +LS GQ + + A+ P ++ LDE +D+ ++ ++ G+ ++V H
Sbjct: 126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTH 183
Query: 882 RLSTIQ 887
L +
Sbjct: 184 ELDMLN 189
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 819 GDRGLQLSGGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGR 874
G LSGG+ QR+ +A + + + +LDE T+ L + + L RL+ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 875 TSVVVAHRLSTIQNCDMI 892
T +V+ H L I+ D I
Sbjct: 900 TVLVIEHNLDVIKTADYI 917
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 825 LSGGQKQRIAIARAILKNPAVLL--LDEATSALDSQ-SEKLVQEALERLMVGRTSVVVAH 881
LSGG+ QRI +A I +L LDE + L + +++L+ +G T +VV H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 882 RLSTIQNCDMI------AVLEQGRVVEEGSHESLL 910
T+ D + A + G VV G+ E ++
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 819 GDRGLQLSGGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGR 874
G LSGG+ QR+ +A + + + +LDE T+ L + + L RL+ G
Sbjct: 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899
Query: 875 TSVVVAHRLSTIQNCDMI 892
T +V+ H L I+ D I
Sbjct: 900 TVLVIEHNLDVIKTADYI 917
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 825 LSGGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVA 880
LSGG+ QR+ +A + + + +LDE T+ L + + L RL+ G T +V+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 881 HRLSTIQNCDMI 892
H L I+ D I
Sbjct: 604 HNLDVIKTADYI 615
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 825 LSGGQKQRIAIARAILKNPAVLL--LDEATSALDSQ-SEKLVQEALERLMVGRTSVVVAH 881
LSGG+ QRI +A I +L LDE + L + +++L+ +G T +VV H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 882 RLSTIQNCDMI------AVLEQGRVVEEGSHESLL 910
T+ D + A + G VV G+ E ++
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI-DGEDIRSYH 755
IE + S +VG++ SGK+T + I F P VV I D +I+ YH
Sbjct: 257 IEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYH 303
>pdb|4GLR|I Chain I, Structure Of The Anti-ptau Fab (pt231/ps235_1) In Complex
With Phosphoepitope Pt231/ps235
pdb|4GLR|K Chain K, Structure Of The Anti-ptau Fab (pt231/ps235_1) In Complex
With Phosphoepitope Pt231/ps235
Length = 212
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 208 YHGAKGGAVFAAGTTIVVGGQALGA 232
Y G+ GG +F AGTT+ V GQ A
Sbjct: 88 YDGSAGGGIFGAGTTLTVLGQPKAA 112
>pdb|3CFZ|A Chain A, Crystal Structure Of M. Jannaschii Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 292
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 646 TDIAKGSNAVASV--FAVLDR-DTKI---NP-EDPKGYRPEKITGHIELQYVHFAYPARP 698
TD +K + + S + +L R D KI NP +DP GYR + + ++L +++ P
Sbjct: 92 TDKSKYKDEINSTNWYKILQRPDVKIGFSNPNDDPCGYRTQMV---LQLAELYYKDPTIY 148
Query: 699 DVIIFKGFSINIEAEKSTALV 719
D ++ K +I +E T L+
Sbjct: 149 DNLVLKHSNIKVEENNGTYLI 169
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 718 LVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH 755
L GQSG+GK+TI + ++ + +V IDG+ RS H
Sbjct: 37 LGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDSFRSQH 72
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 825 LSGGQKQRIAIAR--AILKNPAV--LLLDEATSALDSQSEKLVQEALERLMVGRTSVVVA 880
LSGG++ AIA +ILK V +LDE +ALD + + L++ +V+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 881 HRLSTIQNCDMI 892
HR T++ D++
Sbjct: 389 HRKGTMEEADVL 400
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 694 YPARPDVIIFKGFSINIEAE---KSTALVGQSGSGKSTIIGLI 733
+ R DVI FK F+ I + TA+VG +GSGKS I I
Sbjct: 2 FLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAI 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,927,762
Number of Sequences: 62578
Number of extensions: 920692
Number of successful extensions: 2467
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2175
Number of HSP's gapped (non-prelim): 173
length of query: 930
length of database: 14,973,337
effective HSP length: 108
effective length of query: 822
effective length of database: 8,214,913
effective search space: 6752658486
effective search space used: 6752658486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)