Query 040875
Match_columns 930
No_of_seqs 378 out of 3442
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 9E-170 2E-174 1496.0 99.7 921 1-927 76-1227(1228)
2 KOG0054 Multidrug resistance-a 100.0 9E-149 2E-153 1350.5 98.1 905 3-927 242-1377(1381)
3 PTZ00265 multidrug resistance 100.0 4E-127 8E-132 1219.7 117.0 917 2-926 103-1466(1466)
4 PLN03130 ABC transporter C fam 100.0 2E-123 5E-128 1195.9 113.9 886 22-927 363-1476(1622)
5 PLN03232 ABC transporter C fam 100.0 1E-121 3E-126 1181.2 112.0 898 6-927 344-1473(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 7E-121 2E-125 1176.2 115.7 898 8-925 363-1520(1522)
7 PTZ00243 ABC transporter; Prov 100.0 2E-120 4E-125 1168.0 112.3 909 5-927 287-1548(1560)
8 TIGR01271 CFTR_protein cystic 100.0 5E-117 1E-121 1137.1 111.7 896 5-928 124-1455(1490)
9 KOG0058 Peptide exporter, ABC 100.0 7E-113 1E-117 960.1 66.2 574 346-928 133-707 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 2.8E-99 6E-104 896.0 55.9 575 348-927 15-590 (1228)
11 COG2274 SunT ABC-type bacterio 100.0 9.9E-97 2E-101 867.7 72.1 569 347-926 141-709 (709)
12 COG1132 MdlB ABC-type multidru 100.0 1E-89 2.2E-94 818.6 74.8 562 349-927 5-566 (567)
13 PRK11174 cysteine/glutathione 100.0 1.8E-89 4E-94 821.3 76.0 570 347-928 9-587 (588)
14 TIGR00958 3a01208 Conjugate Tr 100.0 2.1E-88 4.6E-93 822.8 75.0 564 347-922 148-711 (711)
15 COG4988 CydD ABC-type transpor 100.0 3.5E-87 7.6E-92 739.8 69.7 551 366-927 6-557 (559)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.8E-87 1.5E-91 811.0 77.0 562 348-925 123-685 (686)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 2.8E-86 6.2E-91 808.3 74.9 566 346-923 142-707 (708)
18 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3E-86 6.5E-91 809.2 73.9 564 347-922 141-709 (710)
19 PRK11160 cysteine/glutathione 100.0 3.5E-85 7.6E-90 777.7 75.9 566 349-924 5-573 (574)
20 PRK11176 lipid transporter ATP 100.0 3.7E-85 8E-90 783.8 75.9 567 349-926 14-580 (582)
21 TIGR03375 type_I_sec_LssB type 100.0 3.5E-85 7.5E-90 797.1 75.4 560 347-916 134-693 (694)
22 PRK10790 putative multidrug tr 100.0 1.6E-84 3.5E-89 778.5 76.6 567 349-929 12-579 (592)
23 TIGR01846 type_I_sec_HlyB type 100.0 8.5E-84 1.8E-88 784.0 76.4 568 347-926 126-693 (694)
24 TIGR02203 MsbA_lipidA lipid A 100.0 4.1E-83 8.8E-88 765.5 75.7 567 350-927 4-570 (571)
25 KOG0057 Mitochondrial Fe/S clu 100.0 3.4E-84 7.4E-89 702.5 59.5 544 374-928 44-589 (591)
26 KOG0056 Heavy metal exporter H 100.0 9.1E-87 2E-91 703.8 37.9 504 416-927 272-776 (790)
27 PRK13657 cyclic beta-1,2-gluca 100.0 6.6E-82 1.4E-86 754.7 77.7 566 348-927 7-572 (588)
28 COG4987 CydC ABC-type transpor 100.0 2.6E-82 5.6E-87 687.6 64.0 557 356-924 12-572 (573)
29 TIGR02204 MsbA_rel ABC transpo 100.0 2.1E-81 4.6E-86 751.0 75.8 569 349-925 7-575 (576)
30 TIGR02868 CydC thiol reductant 100.0 5.6E-82 1.2E-86 747.1 69.7 523 350-883 3-529 (529)
31 PRK10789 putative multidrug tr 100.0 2.1E-81 4.5E-86 745.4 72.8 544 373-927 8-552 (569)
32 TIGR01192 chvA glucan exporter 100.0 7E-81 1.5E-85 741.7 77.4 565 348-926 7-571 (585)
33 PTZ00265 multidrug resistance 100.0 3.7E-81 8E-86 797.9 73.8 568 348-926 47-729 (1466)
34 COG5265 ATM1 ABC-type transpor 100.0 1.8E-83 4E-88 674.1 40.4 491 425-923 4-496 (497)
35 TIGR02857 CydD thiol reductant 100.0 3E-79 6.6E-84 723.8 70.8 526 361-895 4-529 (529)
36 TIGR01842 type_I_sec_PrtD type 100.0 2.6E-77 5.5E-82 708.0 72.7 536 359-911 5-542 (544)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.8E-73 6.2E-78 673.0 66.8 534 347-903 4-551 (555)
38 COG4618 ArpD ABC-type protease 100.0 2E-73 4.4E-78 611.8 53.4 529 369-912 32-561 (580)
39 PLN03232 ABC transporter C fam 100.0 5.4E-71 1.2E-75 712.2 73.8 537 360-926 301-841 (1495)
40 PLN03130 ABC transporter C fam 100.0 1.1E-70 2.4E-75 708.3 74.6 539 359-925 300-840 (1622)
41 PRK10522 multidrug transporter 100.0 1.3E-67 2.9E-72 624.8 67.0 523 356-910 9-538 (547)
42 KOG0054 Multidrug resistance-a 100.0 3.1E-66 6.7E-71 630.1 65.1 544 358-925 199-743 (1381)
43 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-64 6.1E-69 650.7 74.0 542 359-925 316-862 (1522)
44 TIGR00954 3a01203 Peroxysomal 100.0 3.2E-63 7E-68 594.5 63.5 531 347-897 78-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 2.5E-60 5.4E-65 612.1 73.1 528 365-922 85-645 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 6.2E-59 1.4E-63 599.0 71.3 546 356-924 240-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.3E-57 1.8E-61 480.8 27.5 238 683-926 1-238 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 7.1E-54 1.5E-58 416.0 22.3 218 684-916 2-229 (240)
49 COG1135 AbcC ABC-type metal io 100.0 7.4E-53 1.6E-57 429.9 21.7 228 685-923 2-243 (339)
50 PRK14257 phosphate ABC transpo 100.0 3.6E-52 7.7E-57 456.8 27.3 223 682-912 78-314 (329)
51 COG1123 ATPase components of v 100.0 1.4E-51 3E-56 459.5 18.2 232 683-925 279-532 (539)
52 COG1117 PstB ABC-type phosphat 100.0 3.2E-51 6.9E-56 395.0 17.7 220 683-912 6-238 (253)
53 cd03252 ABCC_Hemolysin The ABC 100.0 4.2E-49 9.1E-54 417.5 27.8 235 685-923 1-235 (237)
54 COG1125 OpuBA ABC-type proline 100.0 5.2E-50 1.1E-54 396.1 19.2 221 685-920 2-233 (309)
55 cd03288 ABCC_SUR2 The SUR doma 100.0 8.6E-49 1.9E-53 419.2 28.8 241 681-925 16-256 (257)
56 COG1124 DppF ABC-type dipeptid 100.0 3E-48 6.6E-53 385.4 21.9 228 684-922 3-241 (252)
57 COG1120 FepC ABC-type cobalami 100.0 4.7E-48 1E-52 397.5 22.6 214 684-911 2-228 (258)
58 COG1122 CbiO ABC-type cobalt t 100.0 4.7E-48 1E-52 398.8 22.6 215 684-911 3-228 (235)
59 cd03251 ABCC_MsbA MsbA is an e 100.0 1.4E-47 2.9E-52 405.3 26.6 233 685-921 1-233 (234)
60 cd03253 ABCC_ATM1_transporter 100.0 2E-47 4.3E-52 404.6 27.6 235 685-924 1-235 (236)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.9E-47 4.1E-52 405.1 27.0 236 685-923 1-236 (238)
62 COG4172 ABC-type uncharacteriz 100.0 5.2E-48 1.1E-52 403.3 21.3 227 682-920 274-524 (534)
63 cd03244 ABCC_MRP_domain2 Domai 100.0 2.2E-47 4.8E-52 400.0 26.3 221 683-906 1-221 (221)
64 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-47 3.1E-52 420.5 25.8 227 685-923 2-242 (343)
65 cd03254 ABCC_Glucan_exporter_l 100.0 4.4E-47 9.6E-52 400.0 26.4 226 683-911 1-226 (229)
66 PRK13631 cbiO cobalt transport 100.0 2.8E-46 6E-51 409.1 27.7 219 683-911 20-265 (320)
67 COG3839 MalK ABC-type sugar tr 100.0 8E-47 1.7E-51 403.4 22.3 219 684-919 3-230 (338)
68 KOG0058 Peptide exporter, ABC 100.0 2.8E-45 6.1E-50 413.6 35.2 318 4-325 196-514 (716)
69 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-46 2.3E-51 353.7 19.6 209 685-911 2-219 (231)
70 cd03245 ABCC_bacteriocin_expor 100.0 4.4E-46 9.5E-51 389.9 26.3 220 683-904 1-220 (220)
71 COG1127 Ttg2A ABC-type transpo 100.0 2.5E-46 5.5E-51 369.2 21.7 227 683-923 7-246 (263)
72 cd03261 ABC_Org_Solvent_Resist 100.0 4.6E-46 9.9E-51 393.6 24.2 213 685-911 1-226 (235)
73 COG3638 ABC-type phosphate/pho 100.0 2.6E-46 5.6E-51 368.1 19.9 215 684-911 3-237 (258)
74 cd03260 ABC_PstB_phosphate_tra 100.0 3.9E-46 8.5E-51 392.1 22.6 213 685-909 1-227 (227)
75 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.3E-46 1.6E-50 378.9 23.5 210 684-911 4-227 (254)
76 cd03248 ABCC_TAP TAP, the Tran 100.0 8.5E-46 1.8E-50 389.3 24.5 220 680-900 7-226 (226)
77 COG4615 PvdE ABC-type sideroph 100.0 6.3E-43 1.4E-47 363.8 45.1 476 406-904 51-530 (546)
78 PRK13650 cbiO cobalt transport 100.0 1.1E-45 2.3E-50 399.3 24.9 217 684-911 4-229 (279)
79 PRK14269 phosphate ABC transpo 100.0 1.4E-45 2.9E-50 392.3 25.3 218 684-911 2-230 (246)
80 PRK14250 phosphate ABC transpo 100.0 2.1E-45 4.5E-50 389.4 26.4 224 684-922 3-231 (241)
81 COG1116 TauB ABC-type nitrate/ 100.0 6.5E-46 1.4E-50 373.1 21.0 198 684-900 3-211 (248)
82 COG1136 SalX ABC-type antimicr 100.0 1.7E-45 3.6E-50 371.1 23.9 208 685-902 2-222 (226)
83 COG2884 FtsE Predicted ATPase 100.0 4E-46 8.7E-51 353.2 18.1 209 685-906 2-221 (223)
84 PRK11153 metN DL-methionine tr 100.0 3.2E-45 6.8E-50 405.6 26.0 217 685-912 2-231 (343)
85 PRK13637 cbiO cobalt transport 100.0 3E-45 6.5E-50 397.1 24.8 218 685-911 3-234 (287)
86 COG3842 PotA ABC-type spermidi 100.0 1.3E-45 2.8E-50 396.2 21.0 220 683-919 4-233 (352)
87 PRK11432 fbpC ferric transport 100.0 3.6E-45 7.9E-50 403.9 25.0 220 683-919 5-233 (351)
88 PRK11650 ugpC glycerol-3-phosp 100.0 3.9E-45 8.4E-50 405.0 25.2 220 684-919 3-231 (356)
89 TIGR01186 proV glycine betaine 100.0 1.8E-45 3.9E-50 405.9 22.2 208 700-919 6-226 (363)
90 PRK13643 cbiO cobalt transport 100.0 2.9E-45 6.4E-50 397.4 23.3 216 685-911 2-233 (288)
91 PRK14242 phosphate transporter 100.0 4.7E-45 1E-49 390.3 24.5 219 684-912 6-238 (253)
92 PRK13646 cbiO cobalt transport 100.0 4.2E-45 9.2E-50 396.1 24.0 217 684-911 2-235 (286)
93 PRK14273 phosphate ABC transpo 100.0 8.8E-45 1.9E-49 388.3 26.1 226 683-919 6-245 (254)
94 PRK13647 cbiO cobalt transport 100.0 5.3E-45 1.2E-49 392.8 24.5 214 684-910 4-226 (274)
95 cd03263 ABC_subfamily_A The AB 100.0 4.6E-45 1E-49 382.2 23.4 212 685-909 1-219 (220)
96 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.9E-45 1.9E-49 376.0 25.2 203 683-906 5-207 (207)
97 cd03296 ABC_CysA_sulfate_impor 100.0 7.1E-45 1.5E-49 385.3 24.9 211 685-911 3-226 (239)
98 TIGR00972 3a0107s01c2 phosphat 100.0 7E-45 1.5E-49 387.3 24.9 223 685-918 2-238 (247)
99 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-45 1.4E-49 402.8 24.9 218 684-918 4-230 (353)
100 PRK10744 pstB phosphate transp 100.0 1.1E-44 2.4E-49 388.4 26.0 219 683-911 12-244 (260)
101 COG4178 ABC-type uncharacteriz 100.0 1.9E-41 4.1E-46 383.0 53.0 470 406-896 89-587 (604)
102 cd03256 ABC_PhnC_transporter A 100.0 7.6E-45 1.7E-49 386.3 23.8 214 685-911 1-234 (241)
103 PRK14235 phosphate transporter 100.0 1.1E-44 2.3E-49 389.5 24.6 220 682-911 17-251 (267)
104 PRK13635 cbiO cobalt transport 100.0 1.3E-44 2.7E-49 390.6 24.9 216 684-911 5-229 (279)
105 cd03219 ABC_Mj1267_LivG_branch 100.0 8.6E-45 1.9E-49 384.4 23.0 213 685-911 1-232 (236)
106 TIGR02315 ABC_phnC phosphonate 100.0 1E-44 2.3E-49 385.6 23.6 213 685-910 2-234 (243)
107 PRK15079 oligopeptide ABC tran 100.0 1.6E-44 3.4E-49 396.7 25.7 226 684-920 8-259 (331)
108 PRK13636 cbiO cobalt transport 100.0 1.2E-44 2.7E-49 391.8 24.4 215 684-911 5-231 (283)
109 PRK13634 cbiO cobalt transport 100.0 1E-44 2.2E-49 393.6 23.8 217 685-911 3-235 (290)
110 PRK10851 sulfate/thiosulfate t 100.0 1.4E-44 3.1E-49 400.0 25.2 218 684-918 2-232 (353)
111 TIGR00960 3a0501s02 Type II (G 100.0 7.2E-45 1.6E-49 379.4 21.5 204 685-900 2-216 (216)
112 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-44 3.1E-49 383.7 24.0 217 685-912 1-226 (242)
113 PRK13642 cbiO cobalt transport 100.0 2E-44 4.4E-49 389.2 25.5 217 684-911 4-229 (277)
114 PRK09536 btuD corrinoid ABC tr 100.0 1.8E-44 4E-49 402.6 25.9 214 684-911 3-228 (402)
115 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-44 2.2E-49 389.9 23.0 220 686-920 26-258 (269)
116 PRK14267 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 387.0 23.6 218 684-911 4-237 (253)
117 PRK13651 cobalt transporter AT 100.0 1.5E-44 3.3E-49 393.1 24.4 217 684-911 2-254 (305)
118 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.1E-43 2.5E-48 381.0 30.4 219 682-922 37-256 (282)
119 COG1118 CysA ABC-type sulfate/ 100.0 5.5E-45 1.2E-49 371.0 19.1 218 684-918 2-233 (345)
120 PRK09452 potA putrescine/sperm 100.0 1.8E-44 3.9E-49 400.9 24.9 219 683-918 13-240 (375)
121 PRK11629 lolD lipoprotein tran 100.0 2.3E-44 4.9E-49 379.9 24.1 211 684-905 5-228 (233)
122 PRK14247 phosphate ABC transpo 100.0 2.2E-44 4.8E-49 384.4 24.2 226 684-920 3-242 (250)
123 cd03224 ABC_TM1139_LivF_branch 100.0 2.2E-44 4.7E-49 377.8 23.7 214 685-911 1-221 (222)
124 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-44 4.2E-49 380.8 23.3 216 685-911 2-230 (233)
125 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-44 4.2E-49 399.3 24.3 220 682-918 3-234 (362)
126 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-44 2.4E-49 377.1 20.8 204 685-904 1-213 (213)
127 TIGR03005 ectoine_ehuA ectoine 100.0 3.7E-44 8E-49 383.0 25.1 214 685-912 1-237 (252)
128 cd03264 ABC_drug_resistance_li 100.0 2.2E-44 4.7E-49 374.4 22.5 204 685-904 1-211 (211)
129 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.5E-44 9.7E-49 378.4 25.2 212 685-911 2-221 (236)
130 cd03266 ABC_NatA_sodium_export 100.0 2.8E-44 6.1E-49 375.7 23.0 208 685-904 2-218 (218)
131 PRK11308 dppF dipeptide transp 100.0 5.8E-44 1.3E-48 392.0 26.5 227 684-921 5-253 (327)
132 cd03250 ABCC_MRP_domain1 Domai 100.0 4.5E-44 9.8E-49 369.8 24.2 200 685-899 1-204 (204)
133 cd03265 ABC_DrrA DrrA is the A 100.0 3E-44 6.6E-49 375.7 23.0 210 685-909 1-219 (220)
134 PRK14268 phosphate ABC transpo 100.0 4.5E-44 9.7E-49 383.2 24.8 225 683-918 11-248 (258)
135 PRK14237 phosphate transporter 100.0 5.8E-44 1.2E-48 383.9 25.5 219 683-911 19-251 (267)
136 PRK14274 phosphate ABC transpo 100.0 4.7E-44 1E-48 383.6 24.5 224 684-918 12-249 (259)
137 PRK14248 phosphate ABC transpo 100.0 6.5E-44 1.4E-48 384.2 25.5 219 684-912 21-253 (268)
138 PRK14256 phosphate ABC transpo 100.0 7.1E-44 1.5E-48 380.8 25.5 220 683-912 3-237 (252)
139 PRK14259 phosphate ABC transpo 100.0 1E-43 2.3E-48 382.0 26.9 220 683-912 12-254 (269)
140 PRK14249 phosphate ABC transpo 100.0 7.9E-44 1.7E-48 380.2 25.8 219 684-912 4-236 (251)
141 PRK10619 histidine/lysine/argi 100.0 6.3E-44 1.4E-48 382.1 25.1 216 683-911 4-241 (257)
142 PRK13632 cbiO cobalt transport 100.0 5.4E-44 1.2E-48 385.0 24.5 216 684-911 7-231 (271)
143 PRK11000 maltose/maltodextrin 100.0 4E-44 8.8E-49 399.8 24.3 218 684-918 3-229 (369)
144 PRK13652 cbiO cobalt transport 100.0 6.8E-44 1.5E-48 385.2 25.3 215 684-911 3-227 (277)
145 PRK14245 phosphate ABC transpo 100.0 4.5E-44 9.7E-49 381.8 23.6 219 684-912 3-235 (250)
146 PRK13633 cobalt transporter AT 100.0 5.2E-44 1.1E-48 386.7 24.4 217 684-911 4-233 (280)
147 PRK14244 phosphate ABC transpo 100.0 2.9E-44 6.3E-49 383.5 22.2 223 685-918 6-243 (251)
148 PRK09493 glnQ glutamine ABC tr 100.0 5.5E-44 1.2E-48 379.0 24.1 213 685-911 2-225 (240)
149 PRK11264 putative amino-acid A 100.0 6.6E-44 1.4E-48 380.9 24.8 215 684-912 3-234 (250)
150 PRK14240 phosphate transporter 100.0 7.7E-44 1.7E-48 380.2 25.1 225 683-918 2-240 (250)
151 PRK11831 putative ABC transpor 100.0 6.1E-44 1.3E-48 384.1 24.5 225 684-923 7-244 (269)
152 PRK14239 phosphate transporter 100.0 7.3E-44 1.6E-48 381.1 24.9 219 684-912 5-237 (252)
153 PRK14251 phosphate ABC transpo 100.0 4.8E-44 1E-48 382.1 23.4 225 684-919 4-242 (251)
154 PRK14262 phosphate ABC transpo 100.0 6.5E-44 1.4E-48 380.8 24.3 227 684-921 3-243 (250)
155 PRK11022 dppD dipeptide transp 100.0 5.4E-44 1.2E-48 392.5 24.2 229 684-921 3-252 (326)
156 PRK13640 cbiO cobalt transport 100.0 1.1E-43 2.3E-48 384.4 26.1 217 683-911 4-232 (282)
157 cd03268 ABC_BcrA_bacitracin_re 100.0 4.8E-44 1E-48 370.9 22.2 204 685-904 1-208 (208)
158 cd03218 ABC_YhbG The ABC trans 100.0 5.7E-44 1.2E-48 377.1 23.2 213 685-911 1-222 (232)
159 PRK13648 cbiO cobalt transport 100.0 8.7E-44 1.9E-48 383.2 24.8 216 684-911 7-231 (269)
160 PRK10575 iron-hydroxamate tran 100.0 6.9E-44 1.5E-48 383.1 23.8 214 684-911 11-237 (265)
161 PRK14236 phosphate transporter 100.0 1.2E-43 2.6E-48 382.4 25.6 219 683-911 24-256 (272)
162 TIGR02211 LolD_lipo_ex lipopro 100.0 7.9E-44 1.7E-48 373.1 22.9 206 685-901 2-220 (221)
163 cd03226 ABC_cobalt_CbiO_domain 100.0 5.5E-44 1.2E-48 369.4 21.4 200 686-901 1-205 (205)
164 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.8E-44 8.2E-49 374.7 20.4 205 685-900 1-218 (218)
165 PRK14260 phosphate ABC transpo 100.0 1.1E-43 2.4E-48 380.4 24.5 220 683-912 6-244 (259)
166 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-43 2.9E-48 376.6 24.8 214 684-911 2-231 (242)
167 PRK14243 phosphate transporter 100.0 1.6E-43 3.4E-48 379.9 25.5 219 684-912 10-249 (264)
168 PRK11614 livF leucine/isoleuci 100.0 1.4E-43 3E-48 375.1 24.6 213 684-911 5-226 (237)
169 PRK14238 phosphate transporter 100.0 1.4E-43 3.1E-48 381.4 25.0 219 684-912 24-256 (271)
170 PRK14270 phosphate ABC transpo 100.0 1.3E-43 2.8E-48 378.5 24.4 218 684-911 4-235 (251)
171 PRK11231 fecE iron-dicitrate t 100.0 1.1E-43 2.3E-48 379.9 23.8 221 685-922 3-235 (255)
172 PRK13644 cbiO cobalt transport 100.0 1.5E-43 3.3E-48 381.5 24.8 214 685-911 2-224 (274)
173 PRK09473 oppD oligopeptide tra 100.0 1.2E-43 2.7E-48 389.9 24.5 229 684-921 12-260 (330)
174 PRK10070 glycine betaine trans 100.0 1.5E-43 3.1E-48 395.2 25.4 206 701-918 42-260 (400)
175 PRK14254 phosphate ABC transpo 100.0 2.6E-43 5.6E-48 381.3 26.6 220 683-912 38-270 (285)
176 TIGR02769 nickel_nikE nickel i 100.0 2.2E-43 4.7E-48 379.3 25.4 218 684-911 2-240 (265)
177 PRK13641 cbiO cobalt transport 100.0 1.9E-43 4.2E-48 383.3 25.2 217 684-911 2-234 (287)
178 cd03301 ABC_MalK_N The N-termi 100.0 8.7E-44 1.9E-48 370.6 21.5 204 685-904 1-213 (213)
179 TIGR03410 urea_trans_UrtE urea 100.0 1.6E-43 3.4E-48 373.1 23.7 213 685-910 1-220 (230)
180 PRK13649 cbiO cobalt transport 100.0 1.4E-43 3E-48 384.1 24.0 217 685-911 3-234 (280)
181 PRK14261 phosphate ABC transpo 100.0 2.3E-43 5E-48 377.1 25.0 228 684-922 6-247 (253)
182 PRK13537 nodulation ABC transp 100.0 1.5E-43 3.3E-48 386.2 24.1 214 683-911 6-227 (306)
183 cd03247 ABCC_cytochrome_bd The 100.0 1.1E-43 2.4E-48 358.2 21.2 178 685-904 1-178 (178)
184 PRK13645 cbiO cobalt transport 100.0 1.7E-43 3.7E-48 384.8 24.2 219 683-911 5-240 (289)
185 PRK11607 potG putrescine trans 100.0 2.7E-43 5.9E-48 392.2 26.2 219 683-918 18-245 (377)
186 PRK13638 cbiO cobalt transport 100.0 2.3E-43 5E-48 380.3 24.7 213 685-911 2-225 (271)
187 PRK14266 phosphate ABC transpo 100.0 2.4E-43 5.1E-48 376.5 24.5 225 684-919 3-241 (250)
188 PRK13548 hmuV hemin importer A 100.0 4.2E-43 9.2E-48 375.2 26.2 214 684-911 2-230 (258)
189 PRK15112 antimicrobial peptide 100.0 3.1E-43 6.6E-48 378.3 25.2 231 684-925 4-253 (267)
190 PRK11124 artP arginine transpo 100.0 2.3E-43 5E-48 374.6 23.9 213 685-911 3-230 (242)
191 PRK11247 ssuB aliphatic sulfon 100.0 2.5E-43 5.4E-48 374.8 24.1 204 684-907 12-219 (257)
192 TIGR03415 ABC_choXWV_ATP choli 100.0 2.1E-43 4.7E-48 390.9 24.4 209 700-920 37-262 (382)
193 PRK10253 iron-enterobactin tra 100.0 2.7E-43 5.9E-48 378.5 24.4 215 683-911 6-233 (265)
194 PRK14241 phosphate transporter 100.0 2.5E-43 5.5E-48 377.7 24.0 218 684-911 4-242 (258)
195 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.5E-43 3.3E-48 370.4 21.8 206 685-906 1-218 (220)
196 PRK14271 phosphate ABC transpo 100.0 4.2E-43 9.1E-48 378.2 25.6 219 684-912 21-252 (276)
197 TIGR03873 F420-0_ABC_ATP propo 100.0 2.7E-43 5.9E-48 376.9 23.7 213 685-911 2-226 (256)
198 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-43 2.9E-48 368.6 20.8 202 686-899 1-211 (211)
199 TIGR02673 FtsE cell division A 100.0 1.5E-43 3.2E-48 369.1 21.0 202 685-899 2-214 (214)
200 cd03292 ABC_FtsE_transporter F 100.0 1.9E-43 4.2E-48 368.4 21.7 203 685-900 1-214 (214)
201 cd03290 ABCC_SUR1_N The SUR do 100.0 4.8E-43 1E-47 366.0 24.5 210 686-899 2-218 (218)
202 PRK14253 phosphate ABC transpo 100.0 4.4E-43 9.5E-48 374.2 24.6 218 684-911 3-233 (249)
203 PRK13639 cbiO cobalt transport 100.0 3.5E-43 7.6E-48 379.2 24.1 214 685-911 2-226 (275)
204 PRK14275 phosphate ABC transpo 100.0 3.8E-43 8.2E-48 380.5 24.5 227 683-920 38-278 (286)
205 PRK14258 phosphate ABC transpo 100.0 4.7E-43 1E-47 375.8 24.9 223 683-916 6-249 (261)
206 TIGR01288 nodI ATP-binding ABC 100.0 3.2E-43 6.9E-48 384.7 24.0 213 684-911 4-224 (303)
207 cd03235 ABC_Metallic_Cations A 100.0 1.3E-43 2.8E-48 369.1 19.9 199 686-904 1-213 (213)
208 PRK14252 phosphate ABC transpo 100.0 6.8E-43 1.5E-47 375.6 26.1 221 682-912 14-250 (265)
209 PRK10584 putative ABC transpor 100.0 4.7E-43 1E-47 368.9 24.1 209 684-903 6-227 (228)
210 TIGR00968 3a0106s01 sulfate AB 100.0 4.6E-43 1E-47 370.5 24.0 211 685-911 1-220 (237)
211 PRK10247 putative ABC transpor 100.0 3.2E-43 7E-48 368.6 22.6 211 684-907 7-223 (225)
212 cd03300 ABC_PotA_N PotA is an 100.0 2.4E-43 5.2E-48 371.7 21.6 211 685-911 1-220 (232)
213 PRK14265 phosphate ABC transpo 100.0 9.1E-43 2E-47 375.4 26.5 219 683-911 19-258 (274)
214 PRK11300 livG leucine/isoleuci 100.0 5.2E-43 1.1E-47 375.2 24.2 214 684-911 5-243 (255)
215 PRK14263 phosphate ABC transpo 100.0 6.7E-43 1.4E-47 373.7 24.9 225 684-919 8-252 (261)
216 PRK10895 lipopolysaccharide AB 100.0 4.7E-43 1E-47 372.0 23.6 214 684-911 3-226 (241)
217 PRK15093 antimicrobial peptide 100.0 6.6E-43 1.4E-47 385.4 25.6 229 684-921 3-257 (330)
218 PRK14264 phosphate ABC transpo 100.0 6.9E-43 1.5E-47 381.7 25.1 219 683-911 44-289 (305)
219 cd03298 ABC_ThiQ_thiamine_tran 100.0 5E-43 1.1E-47 364.2 22.9 202 685-904 1-211 (211)
220 cd03269 ABC_putative_ATPase Th 100.0 3.5E-43 7.6E-48 365.0 21.7 202 685-904 1-210 (210)
221 PRK14272 phosphate ABC transpo 100.0 6.2E-43 1.3E-47 373.9 24.1 226 684-920 4-244 (252)
222 PRK14255 phosphate ABC transpo 100.0 6.6E-43 1.4E-47 373.5 24.0 223 684-917 5-241 (252)
223 PRK10771 thiQ thiamine transpo 100.0 1.3E-42 2.9E-47 366.1 25.5 209 685-911 2-219 (232)
224 TIGR03522 GldA_ABC_ATP gliding 100.0 8.2E-43 1.8E-47 380.8 24.4 212 685-911 3-221 (301)
225 PRK10908 cell division protein 100.0 7.1E-43 1.5E-47 365.8 23.0 205 685-902 2-217 (222)
226 PRK14246 phosphate ABC transpo 100.0 1.3E-42 2.8E-47 370.7 25.1 229 683-922 9-251 (257)
227 PRK13547 hmuV hemin importer A 100.0 1.3E-42 2.8E-47 372.5 24.5 213 685-911 2-244 (272)
228 PRK13536 nodulation factor exp 100.0 1.1E-42 2.3E-47 383.2 24.4 213 684-911 41-261 (340)
229 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-42 2.7E-47 366.2 23.7 210 685-904 2-228 (228)
230 cd03246 ABCC_Protease_Secretio 100.0 7.8E-43 1.7E-47 350.1 21.2 172 685-900 1-173 (173)
231 PRK11144 modC molybdate transp 100.0 1.2E-42 2.6E-47 386.4 24.3 210 685-912 2-219 (352)
232 PRK11701 phnK phosphonate C-P 100.0 2.8E-42 6.1E-47 369.6 25.9 224 684-921 6-250 (258)
233 TIGR00956 3a01205 Pleiotropic 100.0 3.9E-41 8.4E-46 430.7 41.1 214 684-908 759-990 (1394)
234 cd03299 ABC_ModC_like Archeal 100.0 2.4E-42 5.3E-47 364.5 24.6 210 685-911 1-219 (235)
235 TIGR01277 thiQ thiamine ABC tr 100.0 2E-42 4.4E-47 359.8 23.3 203 685-905 1-212 (213)
236 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-42 2.2E-47 362.7 20.9 202 685-900 1-213 (213)
237 PRK10418 nikD nickel transport 100.0 2.7E-42 5.9E-47 368.6 24.6 228 684-926 4-245 (254)
238 PRK15064 ABC transporter ATP-b 100.0 1.4E-41 3E-46 401.2 33.1 202 683-911 318-525 (530)
239 PRK09984 phosphonate/organopho 100.0 1.5E-42 3.4E-47 372.5 22.7 224 684-925 4-252 (262)
240 TIGR01188 drrA daunorubicin re 100.0 1.3E-42 2.8E-47 379.7 21.8 200 700-911 6-213 (302)
241 TIGR01978 sufC FeS assembly AT 100.0 2.1E-42 4.6E-47 367.9 22.6 214 685-911 1-234 (243)
242 PRK11248 tauB taurine transpor 100.0 3.3E-42 7.1E-47 367.1 23.0 203 685-906 2-215 (255)
243 PRK10419 nikE nickel transport 100.0 6.9E-42 1.5E-46 367.7 24.8 226 684-922 3-250 (268)
244 COG0444 DppD ABC-type dipeptid 100.0 3.7E-42 7.9E-47 358.1 21.3 229 685-922 2-253 (316)
245 TIGR02142 modC_ABC molybdenum 100.0 7.2E-42 1.6E-46 380.9 24.1 213 689-918 4-227 (354)
246 COG1131 CcmA ABC-type multidru 100.0 1.2E-41 2.7E-46 367.4 23.4 214 684-911 4-226 (293)
247 cd03234 ABCG_White The White s 100.0 5.8E-42 1.2E-46 359.8 20.0 206 685-904 4-226 (226)
248 TIGR02982 heterocyst_DevA ABC 100.0 1.3E-41 2.8E-46 355.6 22.4 205 685-900 2-219 (220)
249 TIGR03740 galliderm_ABC gallid 100.0 1.3E-41 2.8E-46 356.6 22.3 206 685-908 1-210 (223)
250 COG4175 ProV ABC-type proline/ 100.0 5.5E-42 1.2E-46 348.9 18.2 225 684-920 4-262 (386)
251 TIGR02323 CP_lyasePhnK phospho 100.0 3.7E-41 8E-46 360.2 25.5 224 684-921 3-247 (253)
252 cd03233 ABC_PDR_domain1 The pl 100.0 1.8E-41 3.9E-46 348.8 21.6 191 684-904 3-202 (202)
253 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-41 3.4E-46 340.7 20.4 170 685-900 1-173 (173)
254 PRK10938 putative molybdenum t 100.0 5.6E-42 1.2E-46 401.4 19.9 209 683-905 259-486 (490)
255 cd03229 ABC_Class3 This class 100.0 2E-41 4.4E-46 341.5 20.4 172 685-899 1-178 (178)
256 cd03297 ABC_ModC_molybdenum_tr 100.0 1.9E-41 4.2E-46 352.9 20.8 201 686-904 3-214 (214)
257 PRK15056 manganese/iron transp 100.0 3.7E-41 8E-46 363.1 23.6 211 684-911 6-230 (272)
258 PRK09544 znuC high-affinity zi 100.0 7.1E-41 1.5E-45 355.4 24.9 208 684-922 4-217 (251)
259 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-41 7.2E-46 337.7 20.8 171 685-899 1-171 (171)
260 PLN03073 ABC transporter F fam 100.0 1.8E-39 3.8E-44 388.5 38.9 202 683-910 507-713 (718)
261 COG1123 ATPase components of v 100.0 3.3E-41 7.3E-46 376.4 22.5 229 684-922 5-254 (539)
262 COG0410 LivF ABC-type branched 100.0 6.1E-41 1.3E-45 331.1 21.6 215 684-911 3-226 (237)
263 COG4608 AppF ABC-type oligopep 100.0 2.9E-41 6.3E-46 344.2 19.5 197 684-922 4-209 (268)
264 TIGR03608 L_ocin_972_ABC putat 100.0 2.9E-41 6.3E-46 349.8 19.5 195 687-895 1-206 (206)
265 cd03213 ABCG_EPDR ABCG transpo 100.0 4.9E-41 1.1E-45 343.3 20.5 183 684-904 3-194 (194)
266 cd03232 ABC_PDR_domain2 The pl 100.0 4.4E-41 9.4E-46 343.3 19.9 182 684-904 3-192 (192)
267 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.1E-40 2.3E-45 342.7 21.7 186 685-910 1-192 (200)
268 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-40 3.3E-45 355.4 23.8 214 684-910 7-240 (252)
269 PRK10261 glutathione transport 100.0 1.2E-40 2.6E-45 398.3 25.4 228 684-923 313-565 (623)
270 cd03223 ABCD_peroxisomal_ALDP 100.0 1.2E-40 2.6E-45 331.3 21.1 164 685-899 1-164 (166)
271 cd03215 ABC_Carb_Monos_II This 100.0 8.8E-41 1.9E-45 338.2 19.6 172 684-900 4-182 (182)
272 TIGR02770 nickel_nikD nickel i 100.0 1.6E-40 3.4E-45 349.8 22.0 208 702-920 1-223 (230)
273 COG4555 NatA ABC-type Na+ tran 100.0 6.9E-41 1.5E-45 320.1 17.3 213 685-911 2-222 (245)
274 PRK10636 putative ABC transpor 100.0 1.1E-38 2.5E-43 381.3 40.8 199 684-910 312-516 (638)
275 PRK03695 vitamin B12-transport 100.0 2.5E-40 5.5E-45 351.6 23.5 207 686-911 2-222 (248)
276 PRK09580 sufC cysteine desulfu 100.0 2.1E-40 4.5E-45 353.7 22.6 215 685-911 2-235 (248)
277 cd03214 ABC_Iron-Siderophores_ 100.0 1.1E-40 2.3E-45 336.9 19.3 177 686-904 1-180 (180)
278 PRK11819 putative ABC transpor 100.0 6.7E-39 1.4E-43 379.5 36.8 203 683-911 323-533 (556)
279 cd03231 ABC_CcmA_heme_exporter 100.0 4.1E-40 8.9E-45 338.9 22.3 195 685-895 1-198 (201)
280 COG0411 LivG ABC-type branched 100.0 7.8E-41 1.7E-45 333.0 16.2 214 684-911 4-239 (250)
281 COG4619 ABC-type uncharacteriz 100.0 7.5E-41 1.6E-45 309.8 14.8 194 699-902 15-214 (223)
282 TIGR01184 ntrCD nitrate transp 100.0 2.1E-40 4.6E-45 348.3 19.7 192 703-910 1-203 (230)
283 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-40 1E-44 385.7 24.9 214 684-911 11-229 (510)
284 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.4E-39 1.6E-43 379.2 34.4 202 684-911 322-531 (552)
285 PRK13540 cytochrome c biogenes 100.0 5.1E-40 1.1E-44 338.1 21.3 195 685-894 2-198 (200)
286 PRK13549 xylose transporter AT 100.0 4E-40 8.7E-45 386.6 22.3 214 684-911 5-232 (506)
287 PRK09700 D-allose transporter 100.0 3.7E-40 8E-45 387.6 21.9 214 684-911 5-234 (510)
288 PRK13538 cytochrome c biogenes 100.0 7.2E-40 1.5E-44 338.1 20.9 196 685-895 2-202 (204)
289 PRK10261 glutathione transport 100.0 9.2E-40 2E-44 390.7 24.1 226 684-918 12-264 (623)
290 cd03267 ABC_NatA_like Similar 100.0 7.8E-40 1.7E-44 345.4 20.7 193 700-904 34-236 (236)
291 cd03216 ABC_Carb_Monos_I This 100.0 1.3E-39 2.9E-44 322.7 21.0 159 685-902 1-162 (163)
292 COG4181 Predicted ABC-type tra 100.0 7.5E-40 1.6E-44 304.1 17.6 209 684-903 6-227 (228)
293 PRK11147 ABC transporter ATPas 100.0 1.4E-38 3E-43 381.8 33.6 201 684-910 319-527 (635)
294 COG4598 HisP ABC-type histidin 100.0 2.6E-40 5.6E-45 309.2 14.3 219 684-917 6-246 (256)
295 PRK10762 D-ribose transporter 100.0 6.6E-40 1.4E-44 384.3 21.4 213 684-910 4-229 (501)
296 PRK15134 microcin C ABC transp 100.0 9.8E-40 2.1E-44 385.4 23.0 217 684-912 275-516 (529)
297 PRK13543 cytochrome c biogenes 100.0 1.7E-39 3.7E-44 337.7 21.8 197 684-897 11-212 (214)
298 COG1137 YhbG ABC-type (unclass 100.0 1.6E-40 3.4E-45 317.3 12.3 215 683-911 3-228 (243)
299 PRK10938 putative molybdenum t 100.0 2.2E-39 4.8E-44 379.4 23.6 211 684-911 3-224 (490)
300 PRK15134 microcin C ABC transp 100.0 3.8E-39 8.3E-44 380.4 25.4 220 684-911 5-246 (529)
301 PRK11288 araG L-arabinose tran 100.0 1.7E-39 3.7E-44 380.9 22.0 209 684-906 4-224 (501)
302 COG4559 ABC-type hemin transpo 100.0 3.8E-39 8.1E-44 310.7 20.2 213 685-911 2-230 (259)
303 PRK10982 galactose/methyl gala 100.0 2.1E-39 4.5E-44 379.5 22.3 210 687-910 1-222 (491)
304 TIGR02324 CP_lyasePhnL phospho 100.0 4.1E-39 8.8E-44 338.1 21.3 201 685-895 2-222 (224)
305 TIGR01189 ccmA heme ABC export 100.0 4.6E-39 9.9E-44 330.6 20.5 194 685-894 1-197 (198)
306 PRK13545 tagH teichoic acids e 100.0 9.2E-39 2E-43 358.4 24.4 214 684-923 21-242 (549)
307 PRK13539 cytochrome c biogenes 100.0 6.3E-39 1.4E-43 331.7 21.3 195 685-897 3-200 (207)
308 TIGR03269 met_CoM_red_A2 methy 100.0 5.6E-39 1.2E-43 378.6 23.5 222 684-911 279-517 (520)
309 TIGR03771 anch_rpt_ABC anchore 100.0 4.7E-39 1E-43 336.4 20.0 187 708-911 1-201 (223)
310 TIGR02633 xylG D-xylose ABC tr 100.0 4.2E-39 9.2E-44 378.1 21.7 213 685-910 2-229 (500)
311 PLN03211 ABC transporter G-25; 100.0 1.1E-38 2.5E-43 380.0 24.9 201 700-911 81-296 (659)
312 PRK13541 cytochrome c biogenes 100.0 8.5E-39 1.8E-43 327.6 20.2 190 685-893 2-193 (195)
313 PRK10535 macrolide transporter 100.0 1.8E-38 3.9E-43 380.7 24.9 216 684-910 4-231 (648)
314 PRK13549 xylose transporter AT 100.0 6.5E-39 1.4E-43 376.4 20.6 217 684-910 259-493 (506)
315 TIGR03269 met_CoM_red_A2 methy 100.0 1E-38 2.2E-43 376.3 22.0 213 685-911 1-258 (520)
316 TIGR01166 cbiO cobalt transpor 100.0 6.5E-39 1.4E-43 327.4 17.6 175 700-885 5-189 (190)
317 TIGR01257 rim_protein retinal- 100.0 1.8E-38 3.9E-43 404.2 25.5 217 683-912 927-1150(2272)
318 PRK13546 teichoic acids export 100.0 3.5E-38 7.6E-43 336.4 23.5 213 684-922 4-241 (264)
319 KOG0060 Long-chain acyl-CoA tr 100.0 9.7E-36 2.1E-40 325.4 41.6 203 683-897 432-641 (659)
320 TIGR00955 3a01204 The Eye Pigm 100.0 1.1E-38 2.5E-43 380.8 18.1 217 684-911 17-256 (617)
321 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.2E-38 1.1E-42 328.6 20.8 195 685-904 23-224 (224)
322 COG4161 ArtP ABC-type arginine 100.0 3.3E-38 7.2E-43 289.7 16.5 214 684-911 2-230 (242)
323 PRK09700 D-allose transporter 100.0 3.9E-38 8.5E-43 370.5 20.9 210 684-908 265-495 (510)
324 COG1129 MglA ABC-type sugar tr 100.0 1.3E-37 2.9E-42 345.5 23.4 208 684-905 8-228 (500)
325 TIGR02633 xylG D-xylose ABC tr 100.0 8.1E-38 1.7E-42 367.2 20.4 215 684-908 257-489 (500)
326 TIGR01257 rim_protein retinal- 100.0 3E-37 6.5E-42 393.1 25.4 216 683-911 1936-2159(2272)
327 TIGR01187 potA spermidine/putr 100.0 1.7E-37 3.7E-42 341.7 19.7 187 718-918 1-196 (325)
328 PRK10762 D-ribose transporter 100.0 1.7E-37 3.7E-42 363.9 20.0 209 684-910 257-483 (501)
329 PRK11288 araG L-arabinose tran 100.0 1.8E-37 3.9E-42 363.7 19.8 210 684-910 257-484 (501)
330 COG4525 TauB ABC-type taurine 100.0 1.8E-37 3.8E-42 294.6 14.9 206 685-907 4-220 (259)
331 cd03237 ABC_RNaseL_inhibitor_d 100.0 7E-37 1.5E-41 323.2 20.8 194 692-910 1-206 (246)
332 PRK15064 ABC transporter ATP-b 100.0 1E-36 2.2E-41 359.9 23.9 201 685-911 2-242 (530)
333 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-37 4.9E-42 328.1 16.3 201 688-903 4-219 (255)
334 COG4167 SapF ABC-type antimicr 100.0 6.3E-37 1.4E-41 287.2 16.3 213 701-925 27-253 (267)
335 PRK11819 putative ABC transpor 100.0 1.3E-36 2.9E-41 359.9 22.2 210 684-911 6-250 (556)
336 COG4172 ABC-type uncharacteriz 100.0 1.4E-36 3.1E-41 317.8 19.4 233 684-925 6-260 (534)
337 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.1E-36 4.5E-41 292.9 18.7 143 685-899 1-144 (144)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.9E-36 4E-41 358.7 22.3 210 684-911 4-248 (552)
339 PRK15177 Vi polysaccharide exp 100.0 1.7E-36 3.7E-41 314.1 18.6 187 702-911 2-192 (213)
340 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-36 2.9E-41 356.5 20.1 210 684-911 268-492 (510)
341 COG4148 ModC ABC-type molybdat 100.0 1.1E-36 2.4E-41 304.9 15.9 196 704-911 15-218 (352)
342 COG3845 ABC-type uncharacteriz 100.0 2.7E-36 5.9E-41 326.9 20.0 208 684-905 4-223 (501)
343 COG4604 CeuD ABC-type enteroch 100.0 9.5E-37 2.1E-41 290.3 13.2 222 685-923 2-234 (252)
344 PRK10982 galactose/methyl gala 100.0 2.5E-36 5.4E-41 353.6 19.4 211 684-909 250-478 (491)
345 COG0488 Uup ATPase components 100.0 4.6E-34 1E-38 326.7 35.1 202 683-911 320-525 (530)
346 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-32 2.3E-37 335.6 41.3 314 9-326 214-528 (711)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 4.7E-35 1E-39 291.0 16.2 155 688-911 4-163 (177)
348 PLN03140 ABC transporter G fam 100.0 2E-34 4.4E-39 367.1 26.1 214 684-907 867-1106(1470)
349 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.3E-34 2.9E-39 286.0 18.9 155 686-899 1-157 (157)
350 PRK13409 putative ATPase RIL; 100.0 1.6E-34 3.6E-39 340.1 21.8 192 684-905 340-536 (590)
351 COG1101 PhnK ABC-type uncharac 100.0 7.6E-35 1.6E-39 281.6 15.0 204 699-904 18-231 (263)
352 TIGR02868 CydC thiol reductant 100.0 3.4E-32 7.3E-37 322.4 41.1 314 10-327 67-383 (529)
353 cd03238 ABC_UvrA The excision 100.0 2E-34 4.3E-39 286.3 18.5 161 699-904 7-176 (176)
354 PRK10636 putative ABC transpor 100.0 2.6E-33 5.6E-38 335.2 23.7 200 685-911 2-236 (638)
355 COG2274 SunT ABC-type bacterio 100.0 3.8E-31 8.3E-36 312.5 40.2 315 7-326 205-520 (709)
356 TIGR00956 3a01205 Pleiotropic 100.0 2E-33 4.3E-38 360.0 20.7 203 700-910 74-299 (1394)
357 COG0396 sufC Cysteine desulfur 100.0 1.2E-32 2.5E-37 270.7 20.9 216 684-911 3-233 (251)
358 COG1119 ModF ABC-type molybden 100.0 5E-33 1.1E-37 277.0 17.7 209 683-905 30-256 (257)
359 COG4136 ABC-type uncharacteriz 100.0 5.3E-33 1.2E-37 252.6 15.2 189 684-888 2-200 (213)
360 PRK11174 cysteine/glutathione 100.0 2.1E-30 4.5E-35 311.1 40.9 311 11-328 78-399 (588)
361 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.9E-30 4.1E-35 317.8 40.8 313 11-327 209-527 (710)
362 PRK11147 ABC transporter ATPas 100.0 1.7E-32 3.7E-37 329.3 22.3 208 684-911 3-243 (635)
363 PRK10789 putative multidrug tr 100.0 2.8E-30 6.1E-35 307.4 41.1 308 14-327 54-363 (569)
364 TIGR03375 type_I_sec_LssB type 100.0 2.8E-30 6.1E-35 315.1 41.6 310 11-326 202-512 (694)
365 PRK13409 putative ATPase RIL; 100.0 3.1E-33 6.6E-38 329.4 14.9 193 688-898 77-287 (590)
366 PLN03140 ABC transporter G fam 100.0 6.6E-33 1.4E-37 353.3 18.1 208 700-910 178-426 (1470)
367 TIGR01193 bacteriocin_ABC ABC- 100.0 3E-30 6.6E-35 315.5 40.9 311 11-327 211-522 (708)
368 PRK11160 cysteine/glutathione 100.0 4.8E-30 1E-34 305.5 41.0 314 8-327 72-388 (574)
369 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4E-30 8.6E-35 313.4 40.9 311 10-327 190-501 (686)
370 TIGR02857 CydD thiol reductant 100.0 7.2E-30 1.6E-34 302.5 41.3 314 7-327 55-370 (529)
371 COG4674 Uncharacterized ABC-ty 100.0 2.4E-32 5.2E-37 259.9 15.9 214 684-911 5-235 (249)
372 TIGR02204 MsbA_rel ABC transpo 100.0 1.3E-29 2.8E-34 303.9 40.8 314 12-327 74-388 (576)
373 TIGR02203 MsbA_lipidA lipid A 100.0 1.8E-29 3.9E-34 302.5 41.1 311 11-327 69-380 (571)
374 COG4152 ABC-type uncharacteriz 100.0 4E-32 8.7E-37 267.5 14.3 210 684-911 2-219 (300)
375 COG1134 TagH ABC-type polysacc 100.0 3.3E-31 7.1E-36 264.7 20.6 190 700-911 40-236 (249)
376 PF00005 ABC_tran: ABC transpo 100.0 2.9E-32 6.2E-37 263.2 11.9 136 703-853 1-137 (137)
377 PLN03073 ABC transporter F fam 100.0 9.4E-32 2E-36 322.1 18.7 222 683-911 176-431 (718)
378 TIGR01846 type_I_sec_HlyB type 100.0 3.7E-29 7.9E-34 305.1 41.3 313 9-327 192-505 (694)
379 PRK11176 lipid transporter ATP 100.0 5E-29 1.1E-33 299.0 41.0 311 11-327 80-391 (582)
380 KOG0064 Peroxisomal long-chain 100.0 1.4E-28 3E-33 265.0 39.5 451 418-895 172-681 (728)
381 COG0488 Uup ATPase components 100.0 2.7E-31 6E-36 304.0 19.9 209 684-911 3-240 (530)
382 COG4107 PhnK ABC-type phosphon 100.0 5.5E-31 1.2E-35 245.3 16.8 228 684-924 6-253 (258)
383 KOG0061 Transporter, ABC super 100.0 6.4E-31 1.4E-35 310.1 20.9 219 683-911 24-260 (613)
384 TIGR01192 chvA glucan exporter 100.0 2.1E-28 4.4E-33 291.9 41.4 311 12-327 68-383 (585)
385 TIGR01842 type_I_sec_PrtD type 100.0 2E-28 4.2E-33 290.6 40.0 304 11-327 61-366 (544)
386 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-28 3.3E-33 291.5 38.1 315 6-326 63-389 (555)
387 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-30 2.6E-35 272.8 16.3 191 699-904 7-226 (226)
388 KOG0927 Predicted transporter 100.0 3.6E-30 7.8E-35 279.9 19.6 196 683-903 388-587 (614)
389 COG1132 MdlB ABC-type multidru 100.0 7.5E-28 1.6E-32 287.3 40.1 313 7-326 63-376 (567)
390 PRK10790 putative multidrug tr 100.0 8.9E-28 1.9E-32 288.4 40.4 306 12-327 81-389 (592)
391 COG4586 ABC-type uncharacteriz 100.0 1.2E-30 2.6E-35 261.4 12.3 203 701-911 38-246 (325)
392 PRK13657 cyclic beta-1,2-gluca 100.0 1.8E-27 3.9E-32 285.3 41.1 298 25-327 85-383 (588)
393 cd03271 ABC_UvrA_II The excisi 100.0 2.4E-29 5.3E-34 264.7 16.5 194 702-906 10-261 (261)
394 cd03278 ABC_SMC_barmotin Barmo 100.0 1.5E-29 3.2E-34 258.1 14.1 164 704-897 14-190 (197)
395 COG4133 CcmA ABC-type transpor 100.0 3E-29 6.6E-34 238.8 12.9 187 686-887 4-194 (209)
396 PRK10522 multidrug transporter 100.0 1.5E-26 3.2E-31 274.5 38.2 308 9-327 61-371 (547)
397 COG4778 PhnL ABC-type phosphon 100.0 6.5E-29 1.4E-33 230.9 11.2 203 684-896 4-226 (235)
398 KOG0065 Pleiotropic drug resis 100.0 6.1E-27 1.3E-31 279.5 26.8 198 700-907 804-1017(1391)
399 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.8E-28 8.3E-33 252.0 12.7 191 684-900 5-211 (213)
400 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.4E-27 2.9E-32 254.1 14.7 192 684-896 3-234 (243)
401 COG4988 CydD ABC-type transpor 99.9 7.7E-24 1.7E-28 236.1 39.1 301 21-327 65-369 (559)
402 TIGR00954 3a01203 Peroxysomal 99.9 9.6E-25 2.1E-29 262.5 33.2 297 26-327 169-500 (659)
403 COG4138 BtuD ABC-type cobalami 99.9 2.3E-27 5E-32 221.5 6.0 208 685-911 4-221 (248)
404 KOG0059 Lipid exporter ABCA1 a 99.9 2.4E-26 5.2E-31 283.4 16.6 216 683-911 563-787 (885)
405 KOG0062 ATPase component of AB 99.9 6.8E-25 1.5E-29 237.7 25.6 208 683-927 361-576 (582)
406 KOG0057 Mitochondrial Fe/S clu 99.9 8.9E-24 1.9E-28 231.5 33.1 314 6-326 84-399 (591)
407 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.1E-26 8.8E-31 243.3 13.7 183 713-896 25-242 (251)
408 cd03240 ABC_Rad50 The catalyti 99.9 6.3E-26 1.4E-30 232.9 13.0 162 707-897 17-197 (204)
409 COG1129 MglA ABC-type sugar tr 99.9 3.9E-25 8.4E-30 246.3 18.1 217 684-908 263-487 (500)
410 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.8E-26 8.3E-31 235.6 9.3 185 684-897 5-204 (212)
411 PRK00349 uvrA excinuclease ABC 99.9 7.4E-25 1.6E-29 266.0 18.9 104 813-917 818-932 (943)
412 COG4987 CydC ABC-type transpor 99.9 3.4E-22 7.4E-27 219.0 35.9 299 21-327 83-386 (573)
413 PRK00635 excinuclease ABC subu 99.9 2E-24 4.4E-29 272.1 20.8 212 684-911 600-906 (1809)
414 KOG0056 Heavy metal exporter H 99.9 1.5E-23 3.2E-28 224.0 18.3 302 16-326 279-585 (790)
415 COG3845 ABC-type uncharacteriz 99.9 2.5E-23 5.5E-28 226.4 19.7 215 683-908 256-489 (501)
416 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3E-24 6.6E-29 228.0 11.7 184 714-897 23-233 (247)
417 TIGR00630 uvra excinuclease AB 99.9 2.8E-23 6.2E-28 251.8 20.8 97 813-909 816-923 (924)
418 COG4170 SapD ABC-type antimicr 99.9 3.8E-23 8.3E-28 198.7 12.8 228 685-921 4-257 (330)
419 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.7E-22 3.7E-27 206.3 13.2 167 703-898 12-191 (198)
420 COG1245 Predicted ATPase, RNas 99.9 1.2E-21 2.6E-26 209.1 14.6 169 703-896 352-530 (591)
421 PF00664 ABC_membrane: ABC tra 99.9 1.1E-18 2.4E-23 187.7 37.6 271 364-637 3-274 (275)
422 KOG0927 Predicted transporter 99.9 1.7E-21 3.7E-26 212.6 14.4 216 683-911 74-309 (614)
423 KOG0066 eIF2-interacting prote 99.9 2.9E-21 6.3E-26 203.7 13.6 193 683-902 585-781 (807)
424 KOG0062 ATPase component of AB 99.8 2.8E-21 6.1E-26 209.8 9.7 199 683-911 79-285 (582)
425 cd03239 ABC_SMC_head The struc 99.8 2E-20 4.2E-25 187.4 14.1 85 807-897 83-172 (178)
426 COG4618 ArpD ABC-type protease 99.8 2.5E-18 5.5E-23 187.0 29.6 297 16-326 83-383 (580)
427 COG4615 PvdE ABC-type sideroph 99.8 3.6E-18 7.9E-23 179.4 29.6 306 10-326 62-370 (546)
428 COG5265 ATM1 ABC-type transpor 99.8 1.2E-18 2.6E-23 185.3 24.8 300 22-326 8-310 (497)
429 cd01128 rho_factor Transcripti 99.8 2.4E-20 5.2E-25 195.3 10.8 197 708-925 11-229 (249)
430 PF00664 ABC_membrane: ABC tra 99.8 5.1E-18 1.1E-22 182.6 29.0 208 21-230 66-275 (275)
431 cd03241 ABC_RecN RecN ATPase i 99.8 1.9E-19 4.1E-24 194.3 15.2 76 824-899 170-249 (276)
432 COG2401 ABC-type ATPase fused 99.8 1.1E-18 2.3E-23 184.3 17.5 198 681-901 354-588 (593)
433 COG0178 UvrA Excinuclease ATPa 99.8 4.3E-19 9.3E-24 202.3 15.5 99 813-911 810-919 (935)
434 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.4E-19 7.3E-24 183.9 13.0 180 704-899 15-211 (213)
435 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.6E-19 5.5E-24 184.0 11.2 145 703-904 17-172 (200)
436 KOG2355 Predicted ABC-type tra 99.8 1.3E-18 2.8E-23 167.4 14.6 210 682-903 11-229 (291)
437 KOG0065 Pleiotropic drug resis 99.8 8.9E-19 1.9E-23 210.2 12.8 202 700-911 128-351 (1391)
438 PRK00635 excinuclease ABC subu 99.8 6.4E-18 1.4E-22 213.9 17.0 213 703-917 1506-1801(1809)
439 cd03227 ABC_Class2 ABC-type Cl 99.7 5.7E-18 1.2E-22 167.7 10.1 73 825-897 78-155 (162)
440 COG1245 Predicted ATPase, RNas 99.7 6.3E-18 1.4E-22 180.9 10.6 188 689-896 79-287 (591)
441 cd03285 ABC_MSH2_euk MutS2 hom 99.7 1.9E-17 4.1E-22 171.9 9.4 152 700-905 17-175 (222)
442 cd03242 ABC_RecF RecF is a rec 99.7 1.1E-16 2.4E-21 172.2 14.7 191 703-900 12-269 (270)
443 PRK00349 uvrA excinuclease ABC 99.7 1.6E-16 3.4E-21 193.8 12.8 94 818-911 483-585 (943)
444 cd00820 PEPCK_HprK Phosphoenol 99.7 4.8E-17 1E-21 145.3 6.0 75 701-783 3-77 (107)
445 cd03243 ABC_MutS_homologs The 99.6 3.9E-16 8.5E-21 160.8 9.3 154 705-909 21-177 (202)
446 cd03283 ABC_MutS-like MutS-lik 99.6 2.6E-16 5.7E-21 160.6 7.8 144 700-895 14-163 (199)
447 TIGR00630 uvra excinuclease AB 99.6 5.8E-16 1.3E-20 188.5 11.6 94 818-911 481-583 (924)
448 TIGR02858 spore_III_AA stage I 99.6 1.8E-15 4E-20 160.3 11.8 142 714-910 112-268 (270)
449 COG4178 ABC-type uncharacteriz 99.6 5.7E-13 1.2E-17 152.4 31.7 294 20-325 106-439 (604)
450 TIGR00606 rad50 rad50. This fa 99.6 5.4E-15 1.2E-19 191.3 14.0 134 772-911 1153-1308(1311)
451 PRK00064 recF recombination pr 99.5 1.1E-13 2.4E-18 154.7 18.3 76 823-900 272-359 (361)
452 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.2E-13 2.5E-18 144.7 12.9 172 704-896 16-212 (220)
453 cd03284 ABC_MutS1 MutS1 homolo 99.5 4.6E-14 9.9E-19 146.1 9.6 150 701-909 19-179 (216)
454 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.2E-13 2.5E-18 141.4 11.8 140 699-889 15-157 (204)
455 KOG0066 eIF2-interacting prote 99.5 4.6E-14 1E-18 149.8 8.8 205 684-902 264-489 (807)
456 KOG0063 RNAse L inhibitor, ABC 99.5 4.5E-13 9.7E-18 142.7 12.8 195 691-911 342-548 (592)
457 PHA02562 46 endonuclease subun 99.4 1.2E-13 2.7E-18 165.5 7.7 106 793-900 432-555 (562)
458 KOG0060 Long-chain acyl-CoA tr 99.4 1.6E-11 3.4E-16 136.4 21.6 296 20-325 142-481 (659)
459 PRK07721 fliI flagellum-specif 99.3 1.5E-11 3.2E-16 138.9 16.6 173 701-907 147-339 (438)
460 TIGR00634 recN DNA repair prot 99.3 7.3E-12 1.6E-16 148.6 10.0 77 823-899 439-519 (563)
461 PRK10869 recombination and rep 99.3 1.3E-11 2.7E-16 145.0 10.0 76 824-899 430-509 (553)
462 cd03281 ABC_MSH5_euk MutS5 hom 99.2 5.9E-11 1.3E-15 122.7 13.3 136 702-889 18-160 (213)
463 smart00534 MUTSac ATPase domai 99.2 2.1E-12 4.5E-17 130.9 2.4 69 820-891 57-130 (185)
464 PRK14079 recF recombination pr 99.2 1.1E-10 2.4E-15 129.9 15.5 79 823-906 262-349 (349)
465 TIGR01069 mutS2 MutS2 family p 99.2 6.6E-11 1.4E-15 143.4 12.9 150 683-886 294-448 (771)
466 PTZ00132 GTP-binding nuclear p 99.2 2.5E-11 5.4E-16 126.6 7.9 44 828-871 156-204 (215)
467 KOG0063 RNAse L inhibitor, ABC 99.2 2.1E-11 4.5E-16 130.2 6.8 170 711-896 98-287 (592)
468 COG0178 UvrA Excinuclease ATPa 99.2 1.3E-10 2.9E-15 133.8 13.6 110 806-917 464-582 (935)
469 TIGR02788 VirB11 P-type DNA tr 99.2 4.5E-11 9.7E-16 131.0 8.3 144 706-911 137-281 (308)
470 PRK13695 putative NTPase; Prov 99.2 4.1E-11 8.8E-16 120.4 7.1 93 822-923 76-170 (174)
471 TIGR00611 recf recF protein. A 99.2 3.8E-10 8.2E-15 126.0 14.6 63 823-887 274-345 (365)
472 PRK14257 phosphate ABC transpo 99.1 4E-11 8.7E-16 132.3 4.8 108 209-327 23-130 (329)
473 COG2884 FtsE Predicted ATPase 99.1 2.8E-11 6.1E-16 116.5 1.5 49 277-327 2-50 (223)
474 COG1116 TauB ABC-type nitrate/ 99.1 5.9E-11 1.3E-15 120.8 3.5 47 276-325 3-49 (248)
475 cd03287 ABC_MSH3_euk MutS3 hom 99.1 5.2E-10 1.1E-14 115.7 10.4 47 700-746 18-65 (222)
476 PRK08533 flagellar accessory p 99.1 2.4E-09 5.3E-14 112.1 14.9 144 710-896 21-184 (230)
477 COG1126 GlnQ ABC-type polar am 99.0 8.7E-11 1.9E-15 115.9 3.4 47 276-325 2-48 (240)
478 cd01124 KaiC KaiC is a circadi 99.0 1.7E-09 3.6E-14 110.2 12.9 80 817-896 64-163 (187)
479 COG3638 ABC-type phosphate/pho 99.0 1.3E-10 2.7E-15 116.3 3.8 49 276-326 3-51 (258)
480 PRK13830 conjugal transfer pro 99.0 1.7E-09 3.7E-14 133.3 13.7 68 839-906 649-728 (818)
481 PRK01156 chromosome segregatio 99.0 7.8E-10 1.7E-14 139.6 10.0 76 821-896 798-883 (895)
482 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.3E-10 4.9E-15 127.2 4.3 64 701-770 20-87 (504)
483 PRK00409 recombination and DNA 99.0 7.8E-10 1.7E-14 134.6 9.1 79 820-900 386-467 (782)
484 TIGR00618 sbcc exonuclease Sbc 99.0 9.8E-10 2.1E-14 140.1 10.1 78 821-898 947-1036(1042)
485 COG1117 PstB ABC-type phosphat 99.0 2E-10 4.3E-15 112.8 2.7 48 275-325 6-53 (253)
486 PRK03918 chromosome segregatio 99.0 1.1E-09 2.3E-14 138.7 9.4 75 822-896 786-867 (880)
487 COG1120 FepC ABC-type cobalami 99.0 3E-10 6.4E-15 118.1 3.5 48 276-326 2-49 (258)
488 COG1136 SalX ABC-type antimicr 99.0 3.1E-10 6.8E-15 115.5 3.6 49 277-325 2-51 (226)
489 cd01131 PilT Pilus retraction 98.9 1.9E-09 4.2E-14 110.4 7.7 119 715-896 3-122 (198)
490 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 5.4E-10 1.2E-14 115.5 3.4 49 276-327 4-52 (254)
491 TIGR02168 SMC_prok_B chromosom 98.9 1.9E-09 4.1E-14 141.4 7.7 75 821-895 1086-1164(1179)
492 COG1125 OpuBA ABC-type proline 98.9 8.1E-10 1.8E-14 111.3 2.8 46 277-325 2-47 (309)
493 COG1127 Ttg2A ABC-type transpo 98.9 1.1E-09 2.3E-14 110.0 3.0 49 275-326 7-55 (263)
494 cd01120 RecA-like_NTPases RecA 98.9 1.8E-08 3.9E-13 99.8 11.9 128 716-886 2-140 (165)
495 COG1124 DppF ABC-type dipeptid 98.8 1.5E-09 3.2E-14 109.6 3.7 51 276-326 3-54 (252)
496 cd03233 ABC_PDR_domain1 The pl 98.8 1.9E-09 4.1E-14 111.0 3.9 52 276-327 3-55 (202)
497 PRK06793 fliI flagellum-specif 98.8 1.7E-08 3.7E-13 113.2 11.5 168 684-905 130-305 (432)
498 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.2E-08 2.7E-13 105.2 9.5 137 700-888 17-158 (218)
499 TIGR02169 SMC_prok_A chromosom 98.8 6.6E-09 1.4E-13 136.1 8.6 76 822-897 1072-1151(1164)
500 COG3839 MalK ABC-type sugar tr 98.8 2.7E-09 5.9E-14 115.4 3.8 47 276-325 3-49 (338)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.3e-170 Score=1496.04 Aligned_cols=921 Identities=47% Similarity=0.793 Sum_probs=870.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHH
Q 040875 1 MILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFL 80 (930)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~ 80 (930)
+++|+|++.|+++|++..||.+.|+|+..|+|..|+++++||+++|||.+ ++|++++.++.|+++|+|++++|++.++
T Consensus 76 ~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~--~~g~~~~~l~~d~~~I~d~~geKvg~~i 153 (1228)
T KOG0055|consen 76 YFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN--STGELVTRLSDDIELIQDAIGEKVGNFI 153 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc--cccceEEEecCcHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999964 4599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHH
Q 040875 81 VNVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTL 160 (930)
Q Consensus 81 ~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~ 160 (930)
+.+.+++++++++|+.+|+++|+++++.|+++.....+++.+.+...+.++.+.++.++++|++++||||.+|+.|+.+.
T Consensus 154 ~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~ 233 (1228)
T KOG0055|consen 154 QLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEI 233 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHH
Q 040875 161 DEFSSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKY 239 (930)
Q Consensus 161 ~~~~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~ 239 (930)
+||++..+...|.+.|++++.|++.| ++++.++.+++++|||..++..+..++|+|+++++.++++.+.|++..|++..
T Consensus 234 ~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~ 313 (1228)
T KOG0055|consen 234 ERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSA 313 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHH
Confidence 99999999999999999999999999 88999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCc
Q 040875 240 ISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKS 319 (930)
Q Consensus 240 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKS 319 (930)
+.+|++|+.+|++.+++.|++++....++..++.++.|+|+||+|+||+|||.++|+|+||+||+||+||+|||||||||
T Consensus 314 f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKS 393 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKS 393 (1228)
T ss_pred HhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHH
Confidence 99999999999999999999988774455666678999999999999999999999999999999999999999999999
Q ss_pred ccccccc-----------cc------------------------------------------------------------
Q 040875 320 TVVSASL-----------ED------------------------------------------------------------ 328 (930)
Q Consensus 320 Tll~~ll-----------~~------------------------------------------------------------ 328 (930)
|++++|. .|
T Consensus 394 T~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~ 473 (1228)
T KOG0055|consen 394 TLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL 473 (1228)
T ss_pred HHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence 9999982 11
Q ss_pred ------------------CCccccccc-----------------------------------------------------
Q 040875 329 ------------------GNLKQNNRE----------------------------------------------------- 337 (930)
Q Consensus 329 ------------------g~~~q~~~~----------------------------------------------------- 337 (930)
||||||.+.
T Consensus 474 ~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN 553 (1228)
T ss_pred hhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc
Confidence 256655321
Q ss_pred -------------c---------------------------c--c-----------c-----------c-----------
Q 040875 338 -------------E---------------------------D--N-----------K-----------K----------- 342 (930)
Q Consensus 338 -------------~---------------------------~--~-----------~-----------~----------- 342 (930)
+ + + . .
T Consensus 554 aD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~ 633 (1228)
T KOG0055|consen 554 ADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVK 633 (1228)
T ss_pred cCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccccc
Confidence 0 0 0 0 0
Q ss_pred --------C-----chHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHH
Q 040875 343 --------L-----TAPAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCF 409 (930)
Q Consensus 343 --------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 409 (930)
. ...++.+++++++++|+++.+|.+.+++.|...|++++.+++++..+...+++........|+++|
T Consensus 634 ~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f 713 (1228)
T KOG0055|consen 634 PEGEDPEEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIF 713 (1228)
T ss_pred ccccccccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 0 112366889999999999999999999999999999999999999888666555555556699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Q 040875 410 FGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQT 489 (930)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~ 489 (930)
+++++...+.++++.|++...++++..++|.++|+++++++++|||.++|+ |.+.+|+++|...++..+.+.+..+++.
T Consensus 714 ~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~ 792 (1228)
T KOG0055|consen 714 LGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQN 792 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHH
Q 040875 490 LSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKM 569 (930)
Q Consensus 490 ~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 569 (930)
+..+++++++.++++|+++++++++.|++++..+.+.+++.....+..+..++..+.+.|+++|++||++|+.|+++.+.
T Consensus 793 ~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~ 872 (1228)
T KOG0055|consen 793 IAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMEL 872 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 570 LEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIA 649 (930)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (930)
|.+.++...+...++.++.++..++++++.++..++++|||.+++.+|.+++.+++.++..+.+....+++..++.+++.
T Consensus 873 y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ 952 (1228)
T KOG0055|consen 873 YKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDIS 952 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHH
Q 040875 650 KGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTI 729 (930)
Q Consensus 650 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL 729 (930)
++..++.+++++++++++.++.++.+..+++.+|+|+|+||+|+||.||+.+||+|+||+|++|+++|+||||||||||+
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTv 1032 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTV 1032 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHH
Confidence 99999999999999987666654333344557799999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhc
Q 040875 730 IGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAG 809 (930)
Q Consensus 730 ~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~ 809 (930)
+.+|.|+|+|++|+|.|||+||+++++++||++|++|+|||.||++||||||+||.. +++++|+.+|++.+++|+||.+
T Consensus 1033 I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1033 ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999954 4899999999999999999999
Q ss_pred CccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhcc
Q 040875 810 LSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNC 889 (930)
Q Consensus 810 Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~ 889 (930)
||+||||.|||+|.+||||||||||||||++||||||+|||||||||.++|+.||++|++...|||+|+|||||+||++|
T Consensus 1112 LP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred CcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 890 DMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 890 DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
|.|+|+++|+|+|+|||+||++ ++|.|++|++.|..
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~--~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA--KRGIYFRLVQLQSS 1227 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh--CCCchHHHhhhccC
Confidence 9999999999999999999998 89999999998864
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.4e-149 Score=1350.47 Aligned_cols=905 Identities=23% Similarity=0.330 Sum_probs=742.2
Q ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCccccccc--CCCChhhHHHHHHhhHHHHHHHhhchHH
Q 040875 3 LYLACIAWIAAFLEAYC---WTRTGERQATRMRAIYLKAILRQDVGYFDL--HVTSTAEIISSVSNDTLVIQDVLSEKLP 77 (930)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~--~~~~~g~i~n~~s~d~~~i~~~~~~~~~ 77 (930)
.++++++|++.++++.| |.+...|.+.|+|.++..++|+|.+..... +..++|+++|+|++|++++.+++.
T Consensus 242 ~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~---- 317 (1381)
T KOG0054|consen 242 YLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC---- 317 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH----
Confidence 46788999999999998 567788999999999999999998655332 234899999999999999999885
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 040875 78 NFLVNVAIFFGSYIVGFMILWQL----VVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAF 153 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~w~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~ 153 (930)
++|.+|..|.+++++.++.|.. +++|++++.+++|+|.++++++.+++++.++.+|+|+++|+|+|+|||+||+|
T Consensus 318 -~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~y 396 (1381)
T KOG0054|consen 318 -FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLY 396 (1381)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhH
Confidence 6666666666666666666644 59999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhh
Q 040875 154 VGEGKTLDEFSSALQGSVKLGLKQGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAG 233 (930)
Q Consensus 154 ~~e~~~~~~~~~~r~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~ 233 (930)
|||++|.+++++.|++|++..+|..++++++.+++++.|.++++++|.++.+..++.+++..+|+++++|++++.|+.++
T Consensus 397 aWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~ 476 (1381)
T KOG0054|consen 397 AWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFML 476 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888765577889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEcc
Q 040875 234 LSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGG 313 (930)
Q Consensus 234 ~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~ 313 (930)
|..+..+.++.+|.+|+++|+..+ +.+.......+++..+.+|+++|++|+|.+..+.++|+||||+|++|+++|||||
T Consensus 477 P~~i~~~vqa~VS~~Ri~~fl~~~-e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~ 555 (1381)
T KOG0054|consen 477 PSVISQLVQAKVSLKRLKEFLLSE-ELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGP 555 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc-ccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECC
Confidence 999999999999999999999764 4443333322333344579999999999875456699999999999999999999
Q ss_pred CCCCCcccccccccc-----------------------------------------------------------------
Q 040875 314 SGSGKSTVVSASLED----------------------------------------------------------------- 328 (930)
Q Consensus 314 sGsGKSTll~~ll~~----------------------------------------------------------------- 328 (930)
+||||||||++|++|
T Consensus 556 vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~T 635 (1381)
T KOG0054|consen 556 VGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLT 635 (1381)
T ss_pred CCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcc
Confidence 999999999999643
Q ss_pred ----------CCcccccccc------------------------------------------------------------
Q 040875 329 ----------GNLKQNNREE------------------------------------------------------------ 338 (930)
Q Consensus 329 ----------g~~~q~~~~~------------------------------------------------------------ 338 (930)
||||||.+..
T Consensus 636 eIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl 715 (1381)
T KOG0054|consen 636 EIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVL 715 (1381)
T ss_pred eecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEe
Confidence 3666664310
Q ss_pred -cc-----------------------------cc------Cch---------HHH-----------------HHHHHHh-
Q 040875 339 -DN-----------------------------KK------LTA---------PAF-----------------RRLLALN- 355 (930)
Q Consensus 339 -~~-----------------------------~~------~~~---------~~~-----------------~~~~~~~- 355 (930)
+. .. .+. ... .+.....
T Consensus 716 ~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee 795 (1381)
T KOG0054|consen 716 KDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEE 795 (1381)
T ss_pred cCCeEecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHH
Confidence 00 00 000 000 0000000
Q ss_pred --------hHhHHHHHH-H-HH---HHHHHHHHHHHHHHHHHHHHHHhccCChhHHh---hhhhHHHHHHHHHHHHHHHH
Q 040875 356 --------IREWKQASL-G-CL---SAILFGAVQPVYAFAMGSMISVYFLKDHDEIK---EKTRFYSLCFFGLSIFSLLT 419 (930)
Q Consensus 356 --------~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 419 (930)
..++.++.. + .+ ..++..++..........|+. +|.++..... .+...|..+|.+++++..++
T Consensus 796 ~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs-~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~ 874 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLS-YWTDDGEDNGTTTVSTSFYLGVYALLGVASSLL 874 (1381)
T ss_pred HhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccCCCcchHHHHHHHHHHHHHHH
Confidence 001111111 1 11 111111222222222223333 2322211111 24567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040875 420 NVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTM 499 (930)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 499 (930)
..++.+.+...+.+.++.||+.|+++++++||+||| .||+|+|+||||+|++.+|+.+|..+..++++++.+++.+++
T Consensus 875 ~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~v 952 (1381)
T KOG0054|consen 875 TLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVV 952 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHH
Q 040875 500 SLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKA----QDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQE 575 (930)
Q Consensus 500 ~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 575 (930)
+.+..|+. +++.+|+.+++++++.+|.+. +++..+. +++...|++|+++|+.|||||+.|++|.+++...++
T Consensus 953 i~~~~P~f---li~~~pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D 1028 (1381)
T KOG0054|consen 953 ISYVTPWF---LIAIIPLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELID 1028 (1381)
T ss_pred hhHHhHHH---HHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhh
Confidence 88888754 445558888877777777653 4444333 367778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 576 APRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAV 655 (930)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (930)
.+.+...-......++....+.+..+....+..+.... ..+..++|.+...+.+.+.....+........+++..++++
T Consensus 1029 ~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SV 1107 (1381)
T KOG0054|consen 1029 ENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSV 1107 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 88876655443333333334444333333333222222 12226789999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCC----CCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHH
Q 040875 656 ASVFAVLDRDTKINPED----PKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIG 731 (930)
Q Consensus 656 ~~i~~~~~~~~~~~~~~----~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~ 731 (930)
+|+.++.+.+++.+.+. ++..|| .+|+|+|+|++++|.+. .++|||||||+|+||||||||||||||||||++
T Consensus 1108 ERv~eY~~~~~E~p~~~~~~~pp~~WP--~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~ 1184 (1381)
T KOG0054|consen 1108 ERVLEYTDIPSEAPLEIEESRPPPSWP--SKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLIL 1184 (1381)
T ss_pred hHHHHHhcCCCCCCCCCcCCCCCCCCC--CCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHH
Confidence 99999998655511111 233343 45999999999999543 457999999999999999999999999999999
Q ss_pred HHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCc
Q 040875 732 LIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLS 811 (930)
Q Consensus 732 lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp 811 (930)
+|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+|| ||.++++|+|||+|||+|+|+++|.++|
T Consensus 1185 aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NL--DPf~e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1185 ALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL--DPFDEYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred HHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccccc--CcccccCHHHHHHHHHHhChHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999 7777899999999999999999999999
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCE
Q 040875 812 EGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDM 891 (930)
Q Consensus 812 ~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~Dr 891 (930)
+|||++|.|+|.|||.||||++||||||||++||||||||||++|++||.+||++||+.|++||||+||||++||.||||
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 892 IAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 892 I~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
|+|||+|+|+|+|+|++|+++ +++.|++++.+...
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~~-~~S~f~~~l~~~~~ 1377 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLSD-KDSLFSSLLKEAAL 1377 (1381)
T ss_pred EEEeeCCeEeecCChHHHHhC-CcchHHHHHHHHHH
Confidence 999999999999999999984 89999877765543
No 3
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.8e-127 Score=1219.74 Aligned_cols=917 Identities=27% Similarity=0.463 Sum_probs=776.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHH
Q 040875 2 ILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLV 81 (930)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~ 81 (930)
+++++++.+++.|++..||...++|+..++|..|++++++++.+|||. . ++|++.+.++.|++.+++++++++..++.
T Consensus 103 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~ 180 (1466)
T PTZ00265 103 LVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-N-PGSKLTSDLDFYLEQVNAGIGTKFITIFT 180 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999999999999999995 5 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHH
Q 040875 82 NVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLD 161 (930)
Q Consensus 82 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~ 161 (930)
.+.+++++++++|+++|.++++.++++|+++.+..++.+++.+..++..+..++..+.++|+++|||+||+|+.|+.+.+
T Consensus 181 ~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 260 (1466)
T PTZ00265 181 YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILK 260 (1466)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHH
Confidence 99999999999999999999999999999999999999999988988888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc--------cCCcchHHHHHHHHHHHHHHHhh
Q 040875 162 EFSSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYH--------GAKGGAVFAAGTTIVVGGQALGA 232 (930)
Q Consensus 162 ~~~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~vft~~~~~~~~~~~l~~ 232 (930)
+|.+..++..+...|...+.++..+ +.++.+..+++++|+|.+++..+ .++++.+++++...+.....+..
T Consensus 261 ~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~ 340 (1466)
T PTZ00265 261 KFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTI 340 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888888888777 67777888999999999988764 47889999888877777777788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEc
Q 040875 233 GLSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVG 312 (930)
Q Consensus 233 ~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG 312 (930)
+.+.+..+.++.+|++|++++++++|+++.. ..+..++.. +.|+++|++|+||++++.++|+|+||+|++||+++|||
T Consensus 341 i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG 418 (1466)
T PTZ00265 341 ILPNITEYMKSLEATNSLYEIINRKPLVENN-DDGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVG 418 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEEC
Confidence 8889999999999999999999887765432 122222222 37999999999997766789999999999999999999
Q ss_pred cCCCCCcccccccc-----------c-cC-----------------------------------C---------------
Q 040875 313 GSGSGKSTVVSASL-----------E-DG-----------------------------------N--------------- 330 (930)
Q Consensus 313 ~sGsGKSTll~~ll-----------~-~g-----------------------------------~--------------- 330 (930)
|||||||||+++|. . +| +
T Consensus 419 ~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~ 498 (1466)
T PTZ00265 419 ESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYN 498 (1466)
T ss_pred CCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccc
Confidence 99999999999872 1 11 0
Q ss_pred --------------------------------------------------------------------------------
Q 040875 331 -------------------------------------------------------------------------------- 330 (930)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (930)
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~ 578 (1466)
T PTZ00265 499 EDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNAS 578 (1466)
T ss_pred cccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCC
Confidence
Q ss_pred -----ccccccc--------------c-----------------------------------------------cccc--
Q 040875 331 -----LKQNNRE--------------E-----------------------------------------------DNKK-- 342 (930)
Q Consensus 331 -----~~q~~~~--------------~-----------------------------------------------~~~~-- 342 (930)
|+|+... | ++..
T Consensus 579 ~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g 658 (1466)
T PTZ00265 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERG 658 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccc
Confidence 0000000 0 0000
Q ss_pred -------------------------------------------C--------------------------------c---
Q 040875 343 -------------------------------------------L--------------------------------T--- 344 (930)
Q Consensus 343 -------------------------------------------~--------------------------------~--- 344 (930)
. .
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~ 738 (1466)
T PTZ00265 659 STVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNN 738 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccc
Confidence 0 0
Q ss_pred --h--H------------H-------------------------------------------------------HHHHHH
Q 040875 345 --A--P------------A-------------------------------------------------------FRRLLA 353 (930)
Q Consensus 345 --~--~------------~-------------------------------------------------------~~~~~~ 353 (930)
. . . +.++++
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1466)
T PTZ00265 739 DNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYR 818 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHH
Confidence 0 0 0 000001
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 354 LNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEY 433 (930)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (930)
..++.++.+.++.+++++.+.+.|+++++++.+++..+.. .........|.+++++++++..++.+++.++..+++++
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~ 896 (1466)
T PTZ00265 819 EIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEK 896 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222245566777788999999999999998866532 22223345677888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 434 LTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIA 513 (930)
Q Consensus 434 ~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~ 513 (930)
+..++|.++|++++++|++|||.+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++
T Consensus 897 ~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~ 976 (1466)
T PTZ00265 897 VEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTG 976 (1466)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987678999999999999999999998888899999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHH
Q 040875 514 VQPLVIVCLYGKEVLLKRMSKK---------------VIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPR 578 (930)
Q Consensus 514 ~~pl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~ 578 (930)
+.+++........+.......+ ..+..+.....+.|++.|++|||+|+.|+.+.++|++..+...
T Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~ 1056 (1466)
T PTZ00265 977 TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSN 1056 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4443332222211111110000 1223456678899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 579 REGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASV 658 (930)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 658 (930)
+...+.....++...+++++..+..++++|+|++++..|.+++|+++.++.+......++..+...++++.++..+.+|+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri 1136 (1466)
T PTZ00265 1057 KGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKY 1136 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999888777666677888999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCC---CCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 040875 659 FAVLDRDTKINPEDPKGYR---PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~---~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r 735 (930)
+++++.+++.+..+..... ++...|.|+|+||+|+||++|+.+||+|+||+|+|||++||||+||||||||+++|+|
T Consensus 1137 ~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r 1216 (1466)
T PTZ00265 1137 YPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR 1216 (1466)
T ss_pred HHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 9999875432211111111 1224578999999999997766689999999999999999999999999999999999
Q ss_pred ccCC------------------------------------------------------CCcEEEECCccCCCCCHHHhhc
Q 040875 736 FYDP------------------------------------------------------LKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 736 l~~~------------------------------------------------------~~G~I~idG~di~~~~~~~lR~ 761 (930)
+|+| ++|+|++||+|++++++++||+
T Consensus 1217 ~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~ 1296 (1466)
T PTZ00265 1217 FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296 (1466)
T ss_pred hCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHh
Confidence 9999 6999999999999999999999
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+|+||||||+||+|||||||+||.+ +++|+|+++|++.++++|||.+||+||||.|||+|.+|||||||||||||||+|
T Consensus 1297 ~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr 1375 (1466)
T PTZ00265 1297 LFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR 1375 (1466)
T ss_pred hccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999976 689999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeC----CEEE-EecChhHHhccCC
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQ----GRVV-EEGSHESLLAKGP 914 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~----G~iv-e~G~~~eLl~~~~ 914 (930)
+|+||||||||||||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++ +
T Consensus 1376 ~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~-~ 1454 (1466)
T PTZ00265 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSV-Q 1454 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhc-C
Confidence 999999999999999999999999999884 69999999999999999999999999 9954 99999999972 5
Q ss_pred CcHHHHHHHHhh
Q 040875 915 AGAYYSLVSLQT 926 (930)
Q Consensus 915 ~g~y~~l~~~~~ 926 (930)
+|.|++|++.|.
T Consensus 1455 ~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1455 DGVYKKYVKLAK 1466 (1466)
T ss_pred CChHHHHHhhcC
Confidence 899999998763
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-123 Score=1195.85 Aligned_cols=886 Identities=21% Similarity=0.280 Sum_probs=659.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCc----ccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 040875 22 RTGERQATRMRAIYLKAILRQD----VGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMIL 97 (930)
Q Consensus 22 ~~~~r~~~~~r~~~~~~l~~~~----~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (930)
+...+.+.++|..+...+++|. ..+++ +. ++|+++|+|++|++++++.+...+..|..++..+++.+++...++
T Consensus 363 ~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~-~~-~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg 440 (1622)
T PLN03130 363 QNVMRVGFRLRSTLVAAVFRKSLRLTHEGRK-KF-TSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhcC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355777777777666666665 44444 24 789999999999999999875444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHH
Q 040875 98 WQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQ 177 (930)
Q Consensus 98 w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~ 177 (930)
| .++++++++++++|++.++++++.+.+++.++..|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++.
T Consensus 441 ~-~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~ 519 (1622)
T PLN03130 441 V-ASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKA 519 (1622)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 346677778888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Q 040875 178 GLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIRDVIKRV 257 (930)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~ 257 (930)
.+..++..++....+...+ +.++|.+++.++.+|++.+|+++.++..+..|+..+|..+..+.++++|++||.+|++.+
T Consensus 520 ~~~~~~~~~~~~~~~~~v~-~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 520 QLLSAFNSFILNSIPVLVT-VVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8887776654444443333 334566666788999999999999999999999999999999999999999999999754
Q ss_pred CCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccccc------C--
Q 040875 258 PDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLED------G-- 329 (930)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~~------g-- 329 (930)
+..+..... .....+.|+++|++|+|+++++.++|+|+||+|++||+++||||||||||||+++|+++ |
T Consensus 599 e~~~~~~~~---~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLPNPP---LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred ccccccCCc---ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 332111110 11112469999999999866567899999999999999999999999999999998532 2
Q ss_pred --------------------------------------------------------------------Cccccccc----
Q 040875 330 --------------------------------------------------------------------NLKQNNRE---- 337 (930)
Q Consensus 330 --------------------------------------------------------------------~~~q~~~~---- 337 (930)
|||||...
T Consensus 676 ~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 676 VIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred EEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 34443210
Q ss_pred ----------c-----------------------------------------------ccc----cC------chHHHHH
Q 040875 338 ----------E-----------------------------------------------DNK----KL------TAPAFRR 350 (930)
Q Consensus 338 ----------~-----------------------------------------------~~~----~~------~~~~~~~ 350 (930)
+ +.+ .. ....+.+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~ 835 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQK 835 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHH
Confidence 0 000 00 0000000
Q ss_pred H----------------------------------------------------HHHh--------hH-hHHHHHH-HH--
Q 040875 351 L----------------------------------------------------LALN--------IR-EWKQASL-GC-- 366 (930)
Q Consensus 351 ~----------------------------------------------------~~~~--------~~-~~~~~~~-~~-- 366 (930)
+ .... .. .+.++.. +.
T Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~ 915 (1622)
T PLN03130 836 LMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAW 915 (1622)
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHH
Confidence 0 0000 00 0011110 10
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 367 LSA--ILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLS 444 (930)
Q Consensus 367 ~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (930)
+.. ++...+..........++.. |.+...........|.++|++++++..++.+++.+++...+.+...++|+++++
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~wl~~-w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~ 994 (1622)
T PLN03130 916 VVMILFLCYVLTEVFRVSSSTWLSE-WTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00011111111111112211 111111111223457778888888888999999999999999999999999999
Q ss_pred HHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 445 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYG 524 (930)
Q Consensus 445 ~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~ 524 (930)
+++++|++||+ ++|+|+++||+++|++.+|+.++..+..++..++.+++.++++++.+|... ++++|+.++++..
T Consensus 995 ~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~~~pl~~~~~~~ 1069 (1622)
T PLN03130 995 SILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL---WAIMPLLVLFYGA 1069 (1622)
T ss_pred HHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 99999999997 799999999999999999999999999999988888888887777776432 2333444433333
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 525 KEVLL---KRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSC 601 (930)
Q Consensus 525 ~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (930)
..++. ++..+......++...++.|+++|++|||+|+.++++.+.+.+..+...+..........+......++.
T Consensus 1070 ~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~-- 1147 (1622)
T PLN03130 1070 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLG-- 1147 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 32222 2222233344567788999999999999999999998888877776655443322222222211112111
Q ss_pred HHHHHHHHHHHHHHhCc-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 040875 602 VVALAFWYGGRLVARGY-IN-----AKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKG 675 (930)
Q Consensus 602 ~~~~~~~~g~~l~~~g~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 675 (930)
..++++.+...+..+. .. .+.+...+.+.......+..+...+..++....+++|+.++++.+++.+...+..
T Consensus 1148 -~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~ 1226 (1622)
T PLN03130 1148 -GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENN 1226 (1622)
T ss_pred -HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 1112222222233321 11 2333344445555667777777888889999999999999987654432111111
Q ss_pred CCCC--CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC
Q 040875 676 YRPE--KITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753 (930)
Q Consensus 676 ~~~~--~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~ 753 (930)
.+++ +..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++
T Consensus 1227 ~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1227 RPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 1111 235789999999999643 3479999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 754 YHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 754 ~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++++|++|++|||||+||+|||||||.++. +++|+|+|+||++++++|+|.++|+||||+|||+|.||||||||||
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred CCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999998764 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccC
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||+++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~- 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN- 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCcHHHHHHHHhhh
Q 040875 914 PAGAYYSLVSLQTA 927 (930)
Q Consensus 914 ~~g~y~~l~~~~~~ 927 (930)
++|.|++|++.+..
T Consensus 1463 ~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1463 EGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCCHHHHHHHHcCh
Confidence 57999999987654
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-121 Score=1181.21 Aligned_cols=898 Identities=20% Similarity=0.291 Sum_probs=670.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCcccc----cccCCCChhhHHHHHHhhHHHHHHHhhchHHH
Q 040875 6 ACIAWIAAFLEAYC---WTRTGERQATRMRAIYLKAILRQDVGY----FDLHVTSTAEIISSVSNDTLVIQDVLSEKLPN 78 (930)
Q Consensus 6 ~~~~~~~~~~~~~~---~~~~~~r~~~~~r~~~~~~l~~~~~~~----~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~ 78 (930)
++.+++...++..| +.+...|.+.++|..+...+++|.+.+ ++ +. ++|+++|++++|++++++...
T Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~-~~-~~G~i~n~ls~Dv~~i~~~~~----- 416 (1495)
T PLN03232 344 AFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARK-NF-ASGKVTNMITTDANALQQIAE----- 416 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcC-CC-CHHHHHHHHHHHHHHHHHHHH-----
Confidence 33444444444444 344456888888887777777776443 33 23 799999999999999999763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q 040875 79 FLVNVAIFFGSYIVGFMILWQL----VVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFV 154 (930)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~w~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~ 154 (930)
.++.+|..|.++++++++.|.. +++++.++++++|++.++++++.+.+++.++..|+|.+.++|+++|||+||+|+
T Consensus 417 ~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~ 496 (1495)
T PLN03232 417 QLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYA 496 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666643 345566667778899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhh
Q 040875 155 GEGKTLDEFSSALQGSVKLGLKQGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGL 234 (930)
Q Consensus 155 ~e~~~~~~~~~~r~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~ 234 (930)
||+.+.+++++.|++|.+..+|..+..++...+....+...+ ..++|.+++.++.+|++.+|+++.++..+..|+..++
T Consensus 497 ~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~ 575 (1495)
T PLN03232 497 WEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVT-LVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLP 575 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877765543333333322 3456777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccC
Q 040875 235 SNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGS 314 (930)
Q Consensus 235 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~s 314 (930)
..+..+.++++|++||.++++.+++.+.... ......+.|+++|++|+|+++++.++|+|+||+|++||+++|||||
T Consensus 576 ~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~---~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~s 652 (1495)
T PLN03232 576 NLLSQVVNANVSLQRIEELLLSEERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGT 652 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccccC---CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCC
Confidence 9999999999999999999976543221111 1111234699999999998655678999999999999999999999
Q ss_pred CCCCcccccccccc------------------------------------------------------------------
Q 040875 315 GSGKSTVVSASLED------------------------------------------------------------------ 328 (930)
Q Consensus 315 GsGKSTll~~ll~~------------------------------------------------------------------ 328 (930)
|||||||+++|+++
T Consensus 653 GSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T 732 (1495)
T PLN03232 653 GEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLT 732 (1495)
T ss_pred CCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCc
Confidence 99999999998531
Q ss_pred ----------CCccccccc--------------c----------------------------------------------
Q 040875 329 ----------GNLKQNNRE--------------E---------------------------------------------- 338 (930)
Q Consensus 329 ----------g~~~q~~~~--------------~---------------------------------------------- 338 (930)
||||||... +
T Consensus 733 ~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L 812 (1495)
T PLN03232 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILV 812 (1495)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEE
Confidence 144444210 0
Q ss_pred -ccc----cC------chHHHHHHH-------------------------------------------------HH-hh-
Q 040875 339 -DNK----KL------TAPAFRRLL-------------------------------------------------AL-NI- 356 (930)
Q Consensus 339 -~~~----~~------~~~~~~~~~-------------------------------------------------~~-~~- 356 (930)
+.+ .. ....+..+. .. .+
T Consensus 813 ~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 892 (1495)
T PLN03232 813 SEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERE 892 (1495)
T ss_pred eCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHHh
Confidence 000 00 000000000 00 00
Q ss_pred -------HhHHHHHH-HH-HH-H--HHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040875 357 -------REWKQASL-GC-LS-A--ILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQ 424 (930)
Q Consensus 357 -------~~~~~~~~-~~-~~-~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (930)
..+.++.. +. .. . ++..............++.. |..+..........|..+|++++++..++.+++.
T Consensus 893 ~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~-w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~ 971 (1495)
T PLN03232 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSI-WTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNS 971 (1495)
T ss_pred cCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 00011111 00 00 0 00001111111111122221 2111110012235688889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 425 YYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIIS 504 (930)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (930)
+++...+.+.+.++|++++++++++|++||+ ++|+|+++||+++|++.+|+.++..+..++..++.+++.+++++...
T Consensus 972 ~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 972 FWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 79999999999999999999999988888888877777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHH
Q 040875 505 WRLALVIIAVQPLVIVCLYGKEVLL---KRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREG 581 (930)
Q Consensus 505 ~~l~lv~~~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 581 (930)
+.. +++++|+.++++.....+. +...+......++..+++.|+++|++|||+|+.++++.+++++..+...+..
T Consensus 1050 ~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~ 1126 (1495)
T PLN03232 1050 TIS---LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFT 1126 (1495)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 533 2223344443333222222 2233334455567888999999999999999999999888887777665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 582 VRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVA-RGYIN-----AKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAV 655 (930)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (930)
........+...... .+...++++.+...+. .+.+. .+.+..++.+......++..+...+.+++.+..++
T Consensus 1127 ~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 1203 (1495)
T PLN03232 1127 LANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSV 1203 (1495)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222211111 1111222222333333 23321 12222344455556677788888899999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCC--CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH
Q 040875 656 ASVFAVLDRDTKINPEDPKGYRPE--KITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLI 733 (930)
Q Consensus 656 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL 733 (930)
+|+.++++.+++.+.......+++ +..|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|
T Consensus 1204 eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232 1204 ERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred HHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999976544321111111111 235789999999999533 35799999999999999999999999999999999
Q ss_pred hcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccc
Q 040875 734 ERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEG 813 (930)
Q Consensus 734 ~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~g 813 (930)
+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+|||||||+++. +++|+|+|+||++++++|+|+++|+|
T Consensus 1283 ~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred hCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 9999999999999999999999999999999999999999999999998763 68999999999999999999999999
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEE
Q 040875 814 YDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIA 893 (930)
Q Consensus 814 ldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~ 893 (930)
|||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 894 VLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 894 vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
|||+|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSR-DTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 9999999999999999983 56799999987764
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.3e-121 Score=1176.20 Aligned_cols=898 Identities=18% Similarity=0.251 Sum_probs=682.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCcc----cccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHH
Q 040875 8 IAWIAAFLEAYC---WTRTGERQATRMRAIYLKAILRQDV----GYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFL 80 (930)
Q Consensus 8 ~~~~~~~~~~~~---~~~~~~r~~~~~r~~~~~~l~~~~~----~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~ 80 (930)
+.+++..+..++ +.+...|.+.++|..+...+|+|.+ +.++ +. ++|+++|+|++|++++.+.+. .+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~-~~-~~G~i~nl~s~D~~~i~~~~~-----~~ 435 (1522)
T TIGR00957 363 LLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARK-SS-TVGEIVNLMSVDAQRFMDLAT-----YI 435 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcC-CC-CHHHHHHHHHHhHHHHHHHHH-----HH
Confidence 344444444444 3444667777777777777777754 3344 23 789999999999999998764 56
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccc
Q 040875 81 VNVAIFFGSYIVGFMILWQ----LVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGE 156 (930)
Q Consensus 81 ~~~~~~~~~~~~~~~~~w~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e 156 (930)
+.+|..+.++++++++.|. .++++++++++++|++.++++++.+.+++.++..|+|.+.++|+++|||+||+|+||
T Consensus 436 ~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e 515 (1522)
T TIGR00957 436 NMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWE 515 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6666666666666655553 347788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCcchHHHHHHHHHHHHHHHhhhhH
Q 040875 157 GKTLDEFSSALQGSVKLGLKQGLCKGFASGINAITYAIWSFLAYYGSRLVM-YHGAKGGAVFAAGTTIVVGGQALGAGLS 235 (930)
Q Consensus 157 ~~~~~~~~~~r~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vft~~~~~~~~~~~l~~~~~ 235 (930)
+.|.+++++.|++|++..++..+..++........+....++.|.++.... ++.++++.+|+++.++..++.|+..++.
T Consensus 516 ~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~ 595 (1522)
T TIGR00957 516 LAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPM 595 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888776555444445444444433333322 3568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcc-cCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccC
Q 040875 236 NFKYISEAASAGEHIRDVIKRVPDIDSENMEGETL-EKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGS 314 (930)
Q Consensus 236 ~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~s 314 (930)
.+..+.++++|.+||.+|++.+++ +....+.... +...+.|+++|++|+|+.+ +.++|+|+||+|++||+++|+||+
T Consensus 596 ~~~~~~~a~~s~~Ri~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~ 673 (1522)
T TIGR00957 596 VISSIVQASVSLKRLRIFLSHEEL-EPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQV 673 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccc-ccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCC
Confidence 999999999999999999975432 2211111111 1112369999999999743 457999999999999999999999
Q ss_pred CCCCcccccccccc------------------------------------------------------------------
Q 040875 315 GSGKSTVVSASLED------------------------------------------------------------------ 328 (930)
Q Consensus 315 GsGKSTll~~ll~~------------------------------------------------------------------ 328 (930)
|||||||+++|+++
T Consensus 674 GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ 753 (1522)
T TIGR00957 674 GCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTE 753 (1522)
T ss_pred CCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCce
Confidence 99999999998431
Q ss_pred ---------CCccccccc--------------c-----------------------------------------------
Q 040875 329 ---------GNLKQNNRE--------------E----------------------------------------------- 338 (930)
Q Consensus 329 ---------g~~~q~~~~--------------~----------------------------------------------- 338 (930)
|||||+... +
T Consensus 754 ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~ 833 (1522)
T TIGR00957 754 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833 (1522)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE
Confidence 123322110 0
Q ss_pred --cccc---Cc-------hHHHHHH-------------------------------------------------------
Q 040875 339 --DNKK---LT-------APAFRRL------------------------------------------------------- 351 (930)
Q Consensus 339 --~~~~---~~-------~~~~~~~------------------------------------------------------- 351 (930)
+.+. .+ ...+..+
T Consensus 834 l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1522)
T TIGR00957 834 MSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSD 913 (1522)
T ss_pred ecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence 0000 00 0000000
Q ss_pred --------------------------HHHh-h-------H-hHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHhcc
Q 040875 352 --------------------------LALN-I-------R-EWKQAS-LGCLSAILFGAVQPV---YAFAMGSMISVYFL 392 (930)
Q Consensus 352 --------------------------~~~~-~-------~-~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 392 (930)
.... + . ++.++. .|....++...+... .......++.. |.
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-w~ 992 (1522)
T TIGR00957 914 SGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSL-WT 992 (1522)
T ss_pred cccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 0000 0 0 001110 011111111111111 11111112221 11
Q ss_pred CCh--hHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHh
Q 040875 393 KDH--DEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAK 470 (930)
Q Consensus 393 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~ 470 (930)
.+. .........|..+|++++++..++.+++.+++...+.+...++|++++++++++|++||+ .+|+|+++||+++
T Consensus 993 ~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~ 1070 (1522)
T TIGR00957 993 DDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSK 1070 (1522)
T ss_pred ccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHH
Confidence 110 000112335667888888888888888888889999999999999999999999999997 7999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 471 DANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEA 550 (930)
Q Consensus 471 D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 550 (930)
|++.+|+.++..+..++..++.+++.++++++.+|+++++++++.++.++....+.+..+...+...+..++...++.|+
T Consensus 1071 Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~ 1150 (1522)
T TIGR00957 1071 ELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNET 1150 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999888888888888877655444433333322222222222333333445567788999999
Q ss_pred HhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCccCHHHHHHHHH
Q 040875 551 VSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLV-ARGYINAKSLFEIFL 629 (930)
Q Consensus 551 l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~~~g~~~~~~~ 629 (930)
+.|++|||+|++|++|.+++.+..+...+..........+......++.. .++++.+...+ ..|.+++|.+..++.
T Consensus 1151 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~ 1227 (1522)
T TIGR00957 1151 LLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVS 1227 (1522)
T ss_pred hCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999988888777655444444333333333322 22233333333 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC--CCCccEEEEEEEEEcCCCCCccceeeee
Q 040875 630 VLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPE--KITGHIELQYVHFAYPARPDVIIFKGFS 707 (930)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~g~I~~~nvsf~Y~~~~~~~vL~~vs 707 (930)
+......++..+...+.+++.+..+.+|+.++.+.+++.+...+...+++ +..|.|+|+||+|+|+++ .++||+|+|
T Consensus 1228 ~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is 1306 (1522)
T TIGR00957 1228 YSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHIN 1306 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-Cccccccee
Confidence 99999999999999999999999999999999976543221101111111 245889999999999754 346999999
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASD 787 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~ 787 (930)
|+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||++. +
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~ 1384 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--S 1384 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999643 3
Q ss_pred CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHH
Q 040875 788 KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEAL 867 (930)
Q Consensus 788 ~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i 867 (930)
+++|+|+|+|++.|+++|+|.++|+||||+|||+|.+||||||||+||||||+|+|+|||||||||+||++||+.||++|
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHh
Q 040875 868 ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 868 ~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
++.+++||+|+||||++++.+||||+|||+|+|+|+|+|+||++ ++|.|++|+++.
T Consensus 1465 ~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~--~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1465 RTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ--QRGIFYSMAKDA 1520 (1522)
T ss_pred HHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh--CCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998 579999999874
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-120 Score=1168.04 Aligned_cols=909 Identities=18% Similarity=0.243 Sum_probs=693.7
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCcccccc--cC--CCChhhHHHHHHhhHHHHHHHhhchHH
Q 040875 5 LACIAWIAAFLEAYC---WTRTGERQATRMRAIYLKAILRQDVGYFD--LH--VTSTAEIISSVSNDTLVIQDVLSEKLP 77 (930)
Q Consensus 5 ~~~~~~~~~~~~~~~---~~~~~~r~~~~~r~~~~~~l~~~~~~~~~--~~--~~~~g~i~n~~s~d~~~i~~~~~~~~~ 77 (930)
++++.+++..++..| +.+...|.+.++|..+...+|+|.+.... .. +.++|+++|+|++|++++.+++...+.
T Consensus 287 l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~ 366 (1560)
T PTZ00243 287 LVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMY 366 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445556666666665 35567889999999999999998753321 11 237899999999999999999876677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccH
Q 040875 78 NFLVNVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEG 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~ 157 (930)
.|..|+..+++.+++...+|| .+++|++++++++|++.++++++.+++++.++.+|+|++.++|+++|||+||+|+||+
T Consensus 367 l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~ 445 (1560)
T PTZ00243 367 LWSSPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEP 445 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666666666 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHH
Q 040875 158 KTLDEFSSALQGSVKLGLKQGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNF 237 (930)
Q Consensus 158 ~~~~~~~~~r~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~ 237 (930)
.|.+++++.|++|++..++..+..++..++....+....+++|.+ +.+.++.+|++.+||++.++..++.|+.++|..+
T Consensus 446 ~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~-y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~ 524 (1560)
T PTZ00243 446 CFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTV-YYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVF 524 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888887776666666666666544 4455788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC-----C--CC------Ccc--C----------------C------------------
Q 040875 238 KYISEAASAGEHIRDVIKRVPDI-----D--SE------NME--G----------------E------------------ 268 (930)
Q Consensus 238 ~~~~~a~~a~~ri~~~l~~~~~~-----~--~~------~~~--~----------------~------------------ 268 (930)
..+.++.+|++||.+||+.++.. + .. ... . +
T Consensus 525 ~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1560)
T PTZ00243 525 TTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRM 604 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 99999999999999999754310 0 00 000 0 0
Q ss_pred ------c--ccCccccEEEEeeEEeCCCC-------------------------------------CCcccccceeeeec
Q 040875 269 ------T--LEKFLGEVEFRNVVFAYPSR-------------------------------------PETIIFKDFCLKVP 303 (930)
Q Consensus 269 ------~--~~~~~~~i~~~~~~f~y~~~-------------------------------------~~~~~L~~isl~i~ 303 (930)
. .....+.+.++|++|+||.. .+.++|+|+||+|+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~ 684 (1560)
T PTZ00243 605 LCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVP 684 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEEC
Confidence 0 00011357788888887531 12458999999999
Q ss_pred CCCEEEEEccCCCCCcccccccccc-----C-------------------------------------------------
Q 040875 304 AGNTVALVGGSGSGKSTVVSASLED-----G------------------------------------------------- 329 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~ll~~-----g------------------------------------------------- 329 (930)
+|++++|+||+|||||||+++|++. |
T Consensus 685 ~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~ 764 (1560)
T PTZ00243 685 RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEAD 764 (1560)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHH
Confidence 9999999999999999999998431 1
Q ss_pred ---------------------Cccccccc--------------c------------------------------------
Q 040875 330 ---------------------NLKQNNRE--------------E------------------------------------ 338 (930)
Q Consensus 330 ---------------------~~~q~~~~--------------~------------------------------------ 338 (930)
||||+... +
T Consensus 765 l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~ 844 (1560)
T PTZ00243 765 LAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV 844 (1560)
T ss_pred HHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH
Confidence 22222100 0
Q ss_pred -----------cccc----C-----chHHHH-------------------------------------------------
Q 040875 339 -----------DNKK----L-----TAPAFR------------------------------------------------- 349 (930)
Q Consensus 339 -----------~~~~----~-----~~~~~~------------------------------------------------- 349 (930)
+.+. . ......
T Consensus 845 ~~~ad~ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1560)
T PTZ00243 845 VPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924 (1560)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHHhChHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 0 000000
Q ss_pred ---------HHHHHhhH-----hHHHHHHHH-HHHHHHHHHHHHHHHHH--------HHHHHHhccCChhHHhhhhhHHH
Q 040875 350 ---------RLLALNIR-----EWKQASLGC-LSAILFGAVQPVYAFAM--------GSMISVYFLKDHDEIKEKTRFYS 406 (930)
Q Consensus 350 ---------~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~ 406 (930)
++.....+ .|..+...+ ........+.++..+++ ..++. .|..+. .......|+
T Consensus 925 ~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~-~w~~~~--~~~~~~~~l 1001 (1560)
T PTZ00243 925 GAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLS-MWSTRS--FKLSAATYL 1001 (1560)
T ss_pred ccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc--cCCCcccHH
Confidence 00000000 010000000 00000000111111111 11121 121111 112233567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 040875 407 LCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALL 486 (930)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~ 486 (930)
.+|+++.++..+..+++.+.....+.+....+|+.++++++++|+.||| ++++|+++||+++|++.+|+.++..+..+
T Consensus 1002 ~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~ 1079 (1560)
T PTZ00243 1002 YVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYL 1079 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777888899999999999999999998 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccH
Q 040875 487 VQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLL---KRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQ 563 (930)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 563 (930)
+..++.+++.++++++.+|.+. ++++|+.+++..+..++. +...+......++...++.|++.|++|||+|+.+
T Consensus 1080 ~~~~~~~i~~li~~~~~~p~~~---~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e 1156 (1560)
T PTZ00243 1080 LQCLFSICSSILVTSASQPFVL---VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKA 1156 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccH
Confidence 9988888888888888877433 333344434333333332 2233334455677889999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCccCHHHHHHHHHHHHHHHHHHHHH
Q 040875 564 ERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGR--LVARGYINAKSLFEIFLVLVSTGKVIADA 641 (930)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~~~g~~~~~~~~~~~~~~~~~~~ 641 (930)
+.+.+++.+..+...+..........+......++..+...++.+++.. +...+.+++|.+..++.+......++..+
T Consensus 1157 ~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l 1236 (1560)
T PTZ00243 1157 HLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWL 1236 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877666555444454444444444443333333332 33345578888877788878888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCC-CC---------------------------CCCCCCC-CCCCccEEEEEEEE
Q 040875 642 GTMTTDIAKGSNAVASVFAVLDRDTKIN-PE---------------------------DPKGYRP-EKITGHIELQYVHF 692 (930)
Q Consensus 642 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~---------------------------~~~~~~~-~~~~g~I~~~nvsf 692 (930)
...+.++++++.+++|+.++++..++.+ ++ .++..++ .+..|.|+|+||+|
T Consensus 1237 ~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf 1316 (1560)
T PTZ00243 1237 VRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQM 1316 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEE
Confidence 9999999999999999999986432211 00 0000011 11347899999999
Q ss_pred EcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCC
Q 040875 693 AYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPAL 772 (930)
Q Consensus 693 ~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~L 772 (930)
+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|++|++|||||+|
T Consensus 1317 ~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~L 1395 (1560)
T PTZ00243 1317 RYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVL 1395 (1560)
T ss_pred EeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcc
Confidence 99753 34699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC-CCEEEeecc
Q 040875 773 FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN-PAVLLLDEA 851 (930)
Q Consensus 773 F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~-~~ILiLDEa 851 (930)
|+|||||||+++ ++++|+|+|+||+.++++|+|.++|+||||.|||+|.||||||||||||||||+++ |+|||||||
T Consensus 1396 F~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEA 1473 (1560)
T PTZ00243 1396 FDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEA 1473 (1560)
T ss_pred ccccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 999999999654 46899999999999999999999999999999999999999999999999999996 899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 852 TSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 852 TSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
||+||++||+.||++|++.+++||+|+||||++++.+||||+|||+|+|+|+|+|+||+++ ++|.|++|++.+..
T Consensus 1474 TSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~-~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1474 TANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN-RQSIFHSMVEALGR 1548 (1560)
T ss_pred CccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999999999999999999973 68999999987754
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.6e-117 Score=1137.10 Aligned_cols=896 Identities=18% Similarity=0.212 Sum_probs=669.2
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCccc----ccccCCCChhhHHHHHHhhHHHHHHHhhchHH
Q 040875 5 LACIAWIAAFLEAYC---WTRTGERQATRMRAIYLKAILRQDVG----YFDLHVTSTAEIISSVSNDTLVIQDVLSEKLP 77 (930)
Q Consensus 5 ~~~~~~~~~~~~~~~---~~~~~~r~~~~~r~~~~~~l~~~~~~----~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~ 77 (930)
++++.+++.+++.++ +.+...+.+.++|..+...+|+|.+. .++ +. ++|+++|+|++|+++|.+++...|.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~-~~-~~g~i~nl~s~Dv~~i~~~~~~~~~ 201 (1490)
T TIGR01271 124 LALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLD-KI-STGQLVSLLSNNLNKFDEGLALAHF 201 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhc-CC-CHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444 34456678888898887777777543 233 23 7899999999999999999876667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccH
Q 040875 78 NFLVNVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEG 157 (930)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~ 157 (930)
.|..++..+++.++++..++| .++++++++++++|++.++++++.+++++.++..|+|++.++|+++|||+||+|+||+
T Consensus 202 ~~~~pi~i~~~~~lL~~~~G~-~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~ 280 (1490)
T TIGR01271 202 VWIAPLQVILLMGLIWELLEV-NGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEE 280 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 777777666666666666666 6799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHh-hhhHH
Q 040875 158 KTLDEFSSALQGSVKLGLKQGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALG-AGLSN 236 (930)
Q Consensus 158 ~~~~~~~~~r~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~-~~~~~ 236 (930)
.|.+++++.|++|++..++..++.++...++++.+.+.++++|.++.+. +.++++.+||+++++.+++.|+. .+|..
T Consensus 281 ~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~--~~~~~~~~ft~lal~~lL~~~l~~~lp~~ 358 (1490)
T TIGR01271 281 AMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALI--KGIILRRIFTTISYCIVLRMTVTRQFPGA 358 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877666655566666565555444443 34688999999999999998875 68888
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCC--------------------------
Q 040875 237 FKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRP-------------------------- 290 (930)
Q Consensus 237 ~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~-------------------------- 290 (930)
+..+.++.+|++||++||+.++ .+.... ......|+++|++|+|+...
T Consensus 359 ~~~~~~a~~s~~RI~~fL~~~e-~~~~~~-----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 359 IQTWYDSLGAITKIQDFLCKEE-YKTLEY-----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-cccccc-----cCCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 9999999999999999997543 221110 01123599999999996320
Q ss_pred -----CcccccceeeeecCCCEEEEEccCCCCCcccccccccc-------------------------------------
Q 040875 291 -----ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLED------------------------------------- 328 (930)
Q Consensus 291 -----~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~~------------------------------------- 328 (930)
..++|+|+||+|++|++++|+||+|||||||+++|++.
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~ 512 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLS 512 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccc
Confidence 13689999999999999999999999999999998431
Q ss_pred --------------------------------------CCccccccc--------------c------------------
Q 040875 329 --------------------------------------GNLKQNNRE--------------E------------------ 338 (930)
Q Consensus 329 --------------------------------------g~~~q~~~~--------------~------------------ 338 (930)
|||||+... +
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l 592 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 122222110 0
Q ss_pred -----------------------------ccc----------cCchHHHHHHH---------------------------
Q 040875 339 -----------------------------DNK----------KLTAPAFRRLL--------------------------- 352 (930)
Q Consensus 339 -----------------------------~~~----------~~~~~~~~~~~--------------------------- 352 (930)
+.+ ......+.+..
T Consensus 593 ~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1490)
T TIGR01271 593 CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSI 672 (1490)
T ss_pred HHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccc
Confidence 000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 040875 353 -------------------------------------------------------------------------------- 352 (930)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (930)
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1490)
T TIGR01271 673 DGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGE 752 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 040875 353 -------------------------------------------------------------------------------- 352 (930)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (930)
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1490)
T TIGR01271 753 ESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEIN 832 (1490)
T ss_pred cccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence
Q ss_pred ---------H-H-------hhH-hHHHHHH-HH-HHHHH---HHHHHHHHHHHHHHHHHHhccCCh------hHH-----
Q 040875 353 ---------A-L-------NIR-EWKQASL-GC-LSAIL---FGAVQPVYAFAMGSMISVYFLKDH------DEI----- 398 (930)
Q Consensus 353 ---------~-~-------~~~-~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~------~~~----- 398 (930)
. . ... ++.++.. +. ...++ ..++......+...|+.. |..+. ...
T Consensus 833 ~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~-~~~~~~~~~~~~~~~~~~~ 911 (1490)
T TIGR01271 833 EEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLIT-DNPSAPNYVDQQHANASSP 911 (1490)
T ss_pred hhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHh-cccccccccccccccCCCc
Confidence 0 0 000 0001100 00 00000 000011111111222222 21100 000
Q ss_pred --------hhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHH
Q 040875 399 --------KEKTRFY-SLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLA 469 (930)
Q Consensus 399 --------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls 469 (930)
.....+| ..+|+++.++..++.+++.+++...+.+.+.++|.+++++++++|+.||+ .+|+|+++||++
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs 989 (1490)
T TIGR01271 912 DVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFT 989 (1490)
T ss_pred cccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHH
Confidence 0011123 34455555556667778888889999999999999999999999999997 799999999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 040875 470 KDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLL---KRMSKKVIKAQDESSKL 546 (930)
Q Consensus 470 ~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 546 (930)
+|++.+|+.++..+..++..++.+++.++++++.+|++.++ .+|+.+++++....+. +...+......++...+
T Consensus 990 ~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~---~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~ 1066 (1490)
T TIGR01271 990 KDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIA---AIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSH 1066 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999888888888888888865443 3344443333333332 22333344556778899
Q ss_pred HHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCccCHHHH
Q 040875 547 AAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVAL--AFWYGGRLVARGYINAKSL 624 (930)
Q Consensus 547 ~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~~~g~~~~g~~ 624 (930)
+.|++.|+.|||+|++++++.+++.+..+..............+.......+..+.... .++++. ...+.|.+
T Consensus 1067 ~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~ 1141 (1490)
T TIGR01271 1067 LITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEV 1141 (1490)
T ss_pred HHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHH
Confidence 99999999999999999999999999888654433322222222222222221111111 111221 23445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC--------------CCCC--CCCCccEEEE
Q 040875 625 FEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPK--------------GYRP--EKITGHIELQ 688 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~~--~~~~g~I~~~ 688 (930)
..++.+......++..+...+.+++..+.+++|+.++.+.+++.....+. ...+ .+..|.|+|+
T Consensus 1142 g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~ 1221 (1490)
T TIGR01271 1142 GIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQ 1221 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEE
Confidence 55555666666777788888899999999999999998765432211000 0001 1234789999
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEcc
Q 040875 689 YVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQ 768 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 768 (930)
||+|+|++. .+++|+|+||+|+|||+||||||||||||||+++|+|+++ ++|+|+|||+|+++++++++|++++||||
T Consensus 1222 nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQ 1299 (1490)
T TIGR01271 1222 GLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQ 1299 (1490)
T ss_pred EEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeC
Confidence 999999753 4679999999999999999999999999999999999997 79999999999999999999999999999
Q ss_pred CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEe
Q 040875 769 EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLL 848 (930)
Q Consensus 769 ~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiL 848 (930)
||+||+||||+||++. ++++|+++|+||++++++++|.++|+||||+|+|+|.+|||||||||||||||+++|+||||
T Consensus 1300 dp~LF~GTIR~NLdp~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1300 KVFIFSGTFRKNLDPY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred CCccCccCHHHHhCcc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999544 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhhh
Q 040875 849 DEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAE 928 (930)
Q Consensus 849 DEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~~ 928 (930)
|||||+||++||+.|++.|++.+++||||+||||++++.+||||+||++|+|+|+|+|+||++ ++|.|++|++.+...
T Consensus 1378 DEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~--~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN--ETSLFKQAMSAADRL 1455 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc--CCcHHHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999999999999999997 689999999877653
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-113 Score=960.09 Aligned_cols=574 Identities=37% Similarity=0.603 Sum_probs=539.6
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CChhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040875 346 PAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFL-KDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQ 424 (930)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (930)
...++++.+.+++|+++..+..+.++........|.+.+++++.... .+. ..........+.++.+...+++.++.
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r~ 209 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIRG 209 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999988888888888888889999987765 221 22223345566777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 425 YYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIIS 504 (930)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (930)
+++.+.++++..++|..+|+++++++++||| +|.+|++++|++.|...+.+.++..+...+.+++..++.+++++..+
T Consensus 210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999998 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHH
Q 040875 505 WRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQ 584 (930)
Q Consensus 505 ~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 584 (930)
|+++++.++.+|++.+...++.++.++.+++.++..++.++...|.+.+++|||+|+.|++..++|.+..++..+...|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040875 585 SWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDR 664 (930)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 664 (930)
....+.+.....+...+....+++||++++..|.++.|.+..++++....+..+..+...++++.++..+.+|+++++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE
Q 040875 665 DTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744 (930)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I 744 (930)
+|..++.. . ..|....|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||++++|.|||+|++|+|
T Consensus 448 ~P~i~~~G-~-~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG-T-LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC-c-cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 87766542 1 122256799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 745 KIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 745 ~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
++||+||++++.++||++|++|.|||+||+|||+|||.||.+ +.+|||+.+|+++++.||||.++|+||||.|||+|.+
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 999999999999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEec
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 904 (930)
|||||||||||||||+|||+||||||||||||.++|..||++|.+..+++|||+|||||+||++||+|+|+|+|+|+|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhccCCCcHHHHHHHHhhhh
Q 040875 905 SHESLLAKGPAGAYYSLVSLQTAE 928 (930)
Q Consensus 905 ~~~eLl~~~~~g~y~~l~~~~~~~ 928 (930)
+|+||+++ ++|.|++|+++|..+
T Consensus 685 ~h~eLl~~-~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSK-PNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhC-cccHHHHHHHHhccc
Confidence 99999984 789999999999754
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.8e-99 Score=895.98 Aligned_cols=575 Identities=41% Similarity=0.673 Sum_probs=533.3
Q ss_pred HHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLAL-NIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
+.++++. .+.++..+.+|.+.+++.|...|++.+..+.+.+.+.........++...+++.++.++++.++..+++..+
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c 94 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSC 94 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 245567778899999999999999999999988876543321222355567888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
+.+.++|...++|...++.+++++++||| .+.+|++..++++|++.+++.+++.+..+++.+.++++++++.|+..|+
T Consensus 95 ~~~~geRq~~riR~~yl~~iLrQdi~~fD--~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~ 172 (1228)
T KOG0055|consen 95 WMRTGERQTARIRSKYLKAILRQDIGWFD--TNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK 172 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceee--cccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 4556999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
++++.+.+.|++++......+.+.+...+.++..++....+.|++.++|||.+|+.|++..++|.+..+..++...+...
T Consensus 173 Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~ 252 (1228)
T KOG0055|consen 173 LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGL 252 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
+.++..+...++.+...++.+|||..++..+..+.|.++.++..+...+..+++....+..+.++..++.++++.++..+
T Consensus 253 ~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~ 332 (1228)
T KOG0055|consen 253 FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKP 332 (1228)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++............|.|+|+||+|+||.||+.++|+|+||+|++||+|||||+|||||||++++|.|||+|++|+|+|
T Consensus 333 ~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 333 SIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred CCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 76665422223344679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||.|+++++.++||++|++|.|||+||++||+|||.||+| +++++|+.+|++.++.++||.+||+||||.|||+|.+||
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 9999999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|||||||||||||++||+||+|||||||||+++|+.||++|++..+|+|+|+|||||+||+++|+|+||++|+|||.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHhhh
Q 040875 907 ESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+||++ .+|.|++|++.|+.
T Consensus 572 ~ELi~--~~G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 572 DELIA--LGGIYSSLVRLQEL 590 (1228)
T ss_pred HHHHh--ccchHHHHHHHHhh
Confidence 99998 45999999998854
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.9e-97 Score=867.70 Aligned_cols=569 Identities=30% Similarity=0.488 Sum_probs=517.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
...+.+....+++..+...++.+++..++....|.+...++|....... .+........++..+++..++..++.+.
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~ 217 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYL 217 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655666666666666666666666665543211 2333344556667788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
+.+.+.++...+..+.++|++++|+.||+ ++++|++++|+ +|.+.+++++.......+..+.+.++.++++++++|+
T Consensus 218 ~~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~ 294 (709)
T COG2274 218 IAHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK 294 (709)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 68999999999 7999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++.+|+.++...+..+++++..++..+..+...+...|++.|++|||+.+.|.++..+|++...+..+...+...
T Consensus 295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~ 374 (709)
T COG2274 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+...+++|+|+.++..|.+|+|.++++.+....+..|+..+...+.+++....+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.+.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++
T Consensus 455 E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 455 EQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred ccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5433221 12334567999999999999765 347999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||.|+++++++++|++|+||||||+||+|||||||++++| +.++||+++||+.+++||||.++|.||||+|||+|.+||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|||||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHhh
Q 040875 907 ESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~~ 926 (930)
+||++ .+|.|+++++.|.
T Consensus 692 ~ell~--~~g~y~~l~~~q~ 709 (709)
T COG2274 692 EELLA--QGGLYARLYQQQE 709 (709)
T ss_pred HHHHH--hcChHHHHHhccC
Confidence 99998 6999999998873
No 12
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1e-89 Score=818.63 Aligned_cols=562 Identities=37% Similarity=0.577 Sum_probs=492.8
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 349 RRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 428 (930)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (930)
++++...+ .+ .+..+.+..++...+....+.+++..++... .+ ......+...++++.++..++.+...+...
T Consensus 5 ~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (567)
T COG1132 5 RRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-AD----LGELLELLLLLLLLALLGGVLRALQSYLGS 77 (567)
T ss_pred HHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 45 6666666666667777777777777777655 11 122223444455555566777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 429 YTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLA 508 (930)
Q Consensus 429 ~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 508 (930)
+.+.+....+|.++++++++.|+++|+ ++++|++++|+++|++.++..+......+...+..+++.+++++..+|.++
T Consensus 78 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (567)
T COG1132 78 RLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLA 155 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888999999999999999999999997 688999999999999999998888766666567788888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040875 509 LVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIA 588 (930)
Q Consensus 509 lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (930)
+++++..|++.+......+..++..++..+..++..+.+.|.+.|+++||+|+.++...+++++..+...+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887777666655567777888888999999999999999999999999999999999888888888878888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040875 589 GICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKI 668 (930)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 668 (930)
.........+..+...+++++|...+..+.+++|.+..++.+......++..+......+..+..+.+|++++++.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 669 NPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 669 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
.....+ .....+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 316 ~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 316 EDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred cCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 221111 2234478999999999974 45799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 749 EDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 749 ~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
+||++++.++||++|++|||||+||+|||+|||.+|.+ +++|||+++|++.++++|+|+++|+||||.|||+|.+||||
T Consensus 391 ~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 391 IDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred EehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 99999999999999999999999999999999999987 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 908 (930)
||||||||||+++||||||||||||+||++||+.|++++++..++||+|+||||++++++||+|+|||+|+|+|+|+|+|
T Consensus 470 QrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HhccCCCcHHHHHHHHhhh
Q 040875 909 LLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 909 Ll~~~~~g~y~~l~~~~~~ 927 (930)
|++ ++|.|++||+.|..
T Consensus 550 Ll~--~~g~y~~l~~~~~~ 566 (567)
T COG1132 550 LLA--KGGLYARLYQAQGG 566 (567)
T ss_pred HHH--cCCHHHHHHHHhhc
Confidence 998 68999999998864
No 13
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-89 Score=821.30 Aligned_cols=570 Identities=22% Similarity=0.313 Sum_probs=484.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+++++++.++.++.+..+.++.++...+....+++++.+++.....+.+ ......+...++++.++..++.+.+.+.
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888765321111 1112234444555666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|.++|++++++|+.+|+ ++++|++++|+++|++.+++.+...+..++..++..++.+++++.++|+
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 6889999999999999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
++++++++.|+.++......+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777667777777777788888999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSL---------FEIFLVLVSTGKVIADAGTMTTDIAKGSNAVAS 657 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (930)
.......+...+..+...++.++++... .|.+++|.+ +.+..+......|+..+...+..+.++..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555545545555444 377777754 122233344567888888999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 658 VFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 658 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+.++++.+++.++.. ....+....+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999997643221111 10111112357999999998863 356999999999999999999999999999999999999
Q ss_pred CCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccc
Q 040875 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTW 817 (930)
Q Consensus 738 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~ 817 (930)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|.+ +++|||+++|++.++++|+|++||+||||.
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~ 478 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTP 478 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999975 689999999999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
|||+|.+|||||||||||||||++||+||||||||||||++||+.|++.|++..+++|+|+||||++++++||+|+||++
T Consensus 479 vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred CEEEEecChhHHhccCCCcHHHHHHHHhhhh
Q 040875 898 GRVVEEGSHESLLAKGPAGAYYSLVSLQTAE 928 (930)
Q Consensus 898 G~ive~G~~~eLl~~~~~g~y~~l~~~~~~~ 928 (930)
|+|+|.|+|+||++ ++|.|+++++.|.++
T Consensus 559 G~i~e~G~~~eL~~--~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 559 GQIVQQGDYAELSQ--AGGLFATLLAHRQEE 587 (588)
T ss_pred CeEeecCCHHHHHh--cchHHHHHHHHhhcC
Confidence 99999999999998 689999999999875
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.1e-88 Score=822.81 Aligned_cols=564 Identities=35% Similarity=0.520 Sum_probs=497.0
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.++++++..++.++.+..+.++.++...+....+++.+.+++........ .........++++.++..++.+++.+.
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888778888888888888888888865432111 111122334445556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
+.+.+.++..++|.++|++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999997 6889999999999999999999988888889888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
++++.++..|+..+......+..++..++..+..++....+.|+++|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888877777777777777888888888899999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
...........+..+...+++++|++++..|.+++|.++++..+......++..+...+.++.++..+.+|+.++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77766666777777777888899999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++... ..+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 3222111 11223357899999999998766678999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++|+||||||++|+|||||||.++.+ +.+|++++++++.++++++++++|+||||.+||+|.+||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 619 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS 619 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence 9999999999999999999999999999999999999875 678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
||||||||||||+++||+|||||||||+||+++|+.+++ ....+++|+|+||||++++..||+|+||++|+|+|+|+|
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~ 697 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTH 697 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCH
Confidence 999999999999999999999999999999999999998 334579999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHH
Q 040875 907 ESLLAKGPAGAYYSLV 922 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~ 922 (930)
+||++ ++|.|++|+
T Consensus 698 ~eL~~--~~~~y~~lv 711 (711)
T TIGR00958 698 KQLME--DQGCYKHLV 711 (711)
T ss_pred HHHHh--CCCchHhcC
Confidence 99998 678999874
No 15
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-87 Score=739.82 Aligned_cols=551 Identities=25% Similarity=0.360 Sum_probs=494.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 366 CLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSK 445 (930)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (930)
.+.+.+.++....+++++...++.++.... ......+...++++.++..+..+.+.......+.+....+|..++++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666667766666554321 23344566677777888888999999999999999999999999999
Q ss_pred HHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 446 ILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGK 525 (930)
Q Consensus 446 ~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~ 525 (930)
+.+.++.+-. ..|+|++.+.+...++.++.++...++.+..+.+..+..++.++..+|..+++++++.|++.+++...
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886 68999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 526 EVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVAL 605 (930)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (930)
.+..++.++++.......+.++.+.++|+.|+|.|+..+...++..+..++.++..++.-+..........++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 040875 606 AFWYGGRLVAR-GYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGH 684 (930)
Q Consensus 606 ~~~~g~~l~~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 684 (930)
+..|.+..... |.++....+.++...--...|+..+++.++.-..+..+.+.++.+.+.+.+..+...+.......+.+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 88777666666 89998888888888888899999999999999999999999999998765432222110111112245
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|.|+++|++|+|.+||+|+++++.++||++++
T Consensus 321 i~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 66679999998643 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
+|||+|+||+|||||||.++.+ +.+|++++++++.+++.|+++. |+|+||++||+|.+|||||+||++|||||+++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999987 6899999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 924 (930)
++++|||||+||.|||+.|++.|.++++++|||+||||++.++++|+|+|||+|+++|.|+|+||.+ ++|.|++|+.+
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~--~~~~y~~l~~~ 554 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE--KQGLYANLLKQ 554 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh--cCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 78999999999
Q ss_pred hhh
Q 040875 925 QTA 927 (930)
Q Consensus 925 ~~~ 927 (930)
|++
T Consensus 555 q~~ 557 (559)
T COG4988 555 QEG 557 (559)
T ss_pred Hhc
Confidence 875
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.8e-87 Score=811.00 Aligned_cols=562 Identities=25% Similarity=0.361 Sum_probs=489.9
Q ss_pred HHHHHHH-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLAL-NIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 348 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.++++.. .++.++.+....+.+++...+....+++++.+++....... ......++..++++.++..++.+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 34455555555566666666666677777777775542211 1122234455556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|..+|++++++|+.||+ +.++|++++|++ |.+.+++.+...+...+.....+++.+++++.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 688999999997 799999888777666666666677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++...+..+..++..++..+..++..+.+.|+++|+++||+++.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777777778888888899999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+...+++++|++++..|.+++|.++++..+......++..+...+..++.+..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++.. ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred ccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 322111 1122234689999999999743 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++++||||||++|+|||||||+++.+ .+|+++++|++.++++++++++|+||||++||+|.+||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LS 590 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLS 590 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999864 79999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|||||||+|||||+++|+|||||||||+||++||+.+++.|++. ++|+|+||||++++++||||+||++|+|+|.|+|
T Consensus 591 GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~ 668 (686)
T TIGR03797 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTY 668 (686)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999886 6899999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHh
Q 040875 907 ESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~ 925 (930)
+||++ ++|.|++|++.|
T Consensus 669 ~~Ll~--~~~~y~~l~~~q 685 (686)
T TIGR03797 669 DELMA--REGLFAQLARRQ 685 (686)
T ss_pred HHHHh--CCcHHHHHHHhc
Confidence 99998 689999999876
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.8e-86 Score=808.33 Aligned_cols=566 Identities=23% Similarity=0.350 Sum_probs=493.7
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040875 346 PAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 425 (930)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (930)
..+++++...+++++.+....+.+++..++....+++++.+++....... ......+...++++.++..++.+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIF 218 (708)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777667777777666666777777777778888888876543211 111223334445556667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 426 YFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISW 505 (930)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (930)
+....+.++..++|.++|++++++|+.||+ ++++|++++|++ |.+.+.+.+.......+..+..+++.+++++.++|
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (708)
T TIGR01193 219 LLNVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNM 295 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999997 689999999997 89999888777766666667777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHH
Q 040875 506 RLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQS 585 (930)
Q Consensus 506 ~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 585 (930)
++++++++..|+.++..+...+..++..++..+..++..+.+.|+++|+++||+++.|+++.++|++..++..+...+..
T Consensus 296 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 375 (708)
T TIGR01193 296 LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQ 375 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998889888888888888888888888888999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040875 586 WIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRD 665 (930)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 665 (930)
........+..++..+...+++++|++++..|.+|+|.++++..+......|+..+...+..++.+..+.+|+.++++.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 455 (708)
T TIGR01193 376 KADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVD 455 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88777777778888888888999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 040875 666 TKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 745 (930)
Q Consensus 666 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~ 745 (930)
++.++.... ...+...|.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 456 ~e~~~~~~~-~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 456 SEFINKKKR-TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred Ccccccccc-cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 432211110 111223478999999999973 34699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 746 IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 746 idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+||+|+++++.+++|++++||||||+||+|||||||.++...+.+|++++++++.++++|+|.++|+||||.+||+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999832368999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred hhHHhccCCCcHHHHHHH
Q 040875 906 HESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 906 ~~eLl~~~~~g~y~~l~~ 923 (930)
|+||++ ++|.|++|++
T Consensus 692 ~~~L~~--~~~~y~~l~~ 707 (708)
T TIGR01193 692 HDELLD--RNGFYASLIH 707 (708)
T ss_pred HHHHHh--cCCcHHHHhh
Confidence 999998 6799999975
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3e-86 Score=809.17 Aligned_cols=564 Identities=27% Similarity=0.364 Sum_probs=491.3
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+++++...++.++.+....+.+++..++....+++.+.+++....... ......+...++++.++..++.+++.+.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666667777777775543211 1112233444555566677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..+++..+|+++++.|+++|+ +.++|++++|++.| +.+++.+...+...+..+..+++.+++++.++|+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 68999999999888 6788888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++......+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777777777777778888889999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+...+++++|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCC---C-CCCC-CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 040875 667 KINPEDP---K-GYRP-EKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK 741 (930)
Q Consensus 667 ~~~~~~~---~-~~~~-~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~ 741 (930)
+.+.... . ...+ +...+.|+++||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3221110 0 0111 2234789999999999853 4579999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCC
Q 040875 742 GVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 742 G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~ 821 (930)
|+|++||+|+++++.+++|++++||||||++|+|||||||.++.+ +.+|+++++|++.+++++++.++|+||||.+||+
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 999999999999999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEE
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVV 901 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 901 (930)
|.+|||||||||+|||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999999999999999999999999
Q ss_pred EecChhHHhccCCCcHHHHHH
Q 040875 902 EEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~y~~l~ 922 (930)
|.|+|+||++ ++|.|++|+
T Consensus 691 ~~G~~~~Ll~--~~~~y~~l~ 709 (710)
T TIGR03796 691 QRGTHEELWA--VGGAYARLI 709 (710)
T ss_pred EecCHHHHHH--cCCcHHHHh
Confidence 9999999998 689999987
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-85 Score=777.70 Aligned_cols=566 Identities=23% Similarity=0.351 Sum_probs=481.4
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 349 RRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHD-EIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 427 (930)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (930)
++++++.++.++.+.++.+..++........+.++++.++........ ............+.++.++..++.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677777777777777767777778877754321110 0000111122234445566777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 428 AYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRL 507 (930)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 507 (930)
...+.++..++|.++|++++++|+.+|+ +.++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 68899999999999999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 508 ALVIIAVQPLVIV-CLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 508 ~lv~~~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++.|++.+ ...+..+..++..++..+..++....+.|.++|+++||+|+.|+++.+++++..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988777776554 334555555666777778888999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVS-TGKVIADAGTMTTDIAKGSNAVASVFAVLDRD 665 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 665 (930)
.......+..++..+..++++++|+.+ ..|.+++|.+++++.+... ...++..+...+..+.++..+.+|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888888888888888999888 4789999998887665433 45677778888899999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 040875 666 TKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 745 (930)
Q Consensus 666 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~ 745 (930)
++.+.... ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 43221111 1111234689999999999753 34699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 746 IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 746 idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+||+|+++++.+++|++++||||||+||+|||+|||+++.+ +.+|++++++++.+++++++++ |+||||.+||+|.+|
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 99999999999999999999999999999999999999875 6899999999999999999999 999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
|||||||+|||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhccCCCcHHHHHHHH
Q 040875 906 HESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 906 ~~eLl~~~~~g~y~~l~~~ 924 (930)
|+||++ ++|.|++|++.
T Consensus 557 ~~~l~~--~~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLA--QQGRYYQLKQR 573 (574)
T ss_pred HHHHHh--cCcHHHHHHhh
Confidence 999998 78999999864
No 20
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.7e-85 Score=783.78 Aligned_cols=567 Identities=32% Similarity=0.501 Sum_probs=488.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 349 RRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 428 (930)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (930)
+++++..++.++.+....+..++........+..+..+++........ .....+...++++.++..+..+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444444555666666544322111 11111223334456667777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 429 YTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLA 508 (930)
Q Consensus 429 ~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 508 (930)
..+.+....+|..+++++++.|..+|+ +..+|++++|+++|++.+.+.+...+..++..++.+++.+++++.++|+++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999997 678999999999999999998888888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040875 509 LVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIA 588 (930)
Q Consensus 509 lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (930)
+++++++|+.++......+..++..++..+..++....+.|.++|+++||+++.|+.+.++|++..++..+...+.....
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777777777777788888889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040875 589 GICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKI 668 (930)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 668 (930)
........++..+...+++++|+..+..|.+++|.+++++.+......|+..+...+..+.++..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 88888888888888888899999999999999999998888888888999999999999999999999999998754321
Q ss_pred CCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 669 NPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 669 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
+. ... ..++..+.|+++||+|+||++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~-~~~--~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 329 DE-GKR--VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CC-CCc--CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 11 111 112233579999999999754 45799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 749 EDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 749 ~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
+|+++++.+++|++++||||||++|+|||||||.++.+++++|++++++++.+++++++++||+||||.+||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999865458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 908 (930)
|||||+|||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhccCCCcHHHHHHHHhh
Q 040875 909 LLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 909 Ll~~~~~g~y~~l~~~~~ 926 (930)
|++ +++.|++|++.|.
T Consensus 565 l~~--~~~~y~~l~~~~~ 580 (582)
T PRK11176 565 LLA--QNGVYAQLHKMQF 580 (582)
T ss_pred HHh--CCChHHHHHHHHh
Confidence 998 6799999998764
No 21
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.5e-85 Score=797.05 Aligned_cols=560 Identities=24% Similarity=0.401 Sum_probs=488.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
..++++...++.++.+....+.+++..++....|++++.+++....... ......+...++++.++..++.+++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 210 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYF 210 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666667677777777777777775442211 1112223334444555677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
..+.+.++..++|..+|++++++|+.| + +.++|++++|+ +|++.+++.+...+...+..+..+++.++++++++|+
T Consensus 211 ~~~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 211 LDVAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999997 4 57899999999 8999999988877777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++..+...+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|++..++..+...+...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888877777777777888888889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+...+..+...+++++|++++..|.+++|.++++..+......|+..+...+.++..+..+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++.. .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 322111 111112234689999999999753 456999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++++||||||++|+|||||||.++.+ +++|+|++++++.++++|+++++|+||||.+||+|.+||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 9999999999999999999999999999999999999976 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|||||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhccCCCc
Q 040875 907 ESLLAKGPAG 916 (930)
Q Consensus 907 ~eLl~~~~~g 916 (930)
+||+++.+.|
T Consensus 684 ~eLl~~~~~~ 693 (694)
T TIGR03375 684 DQVLEALRKG 693 (694)
T ss_pred HHHHHHhhcC
Confidence 9999754444
No 22
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-84 Score=778.51 Aligned_cols=567 Identities=26% Similarity=0.391 Sum_probs=474.7
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 349 RRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 428 (930)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (930)
+++..+..+.++.+....++.++...+....+..++.+++.......... .....+.++++++.++..++.+.+.+...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLFN 90 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666777777777778888888875543211111 11111223344445566677888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 429 YTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLA 508 (930)
Q Consensus 429 ~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 508 (930)
..+.++..++|.++|+++++.|.++|+ +.++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 91 RAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 688999999999999999999988888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040875 509 LVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIA 588 (930)
Q Consensus 509 lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (930)
++++++.|+.++......+..++..++..+..++...++.|.+.|+++||+|+.|+++.+++.+..++..+...+.....
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777666666666666666777777888899999999999999999999999999998888777766655544
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040875 589 GIC-LAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTK 667 (930)
Q Consensus 589 ~~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 667 (930)
... .....++..+...++.++++. +..|.+++|.++++..+......|+..+...+..++++..+.+|+.++++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 327 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ 327 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 432 233333333333333333333 578999999999999999999999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC
Q 040875 668 INPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 747 (930)
Q Consensus 668 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id 747 (930)
. ... . ..+...+.|+|+||+|+||+ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 328 ~-~~~-~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 328 Q-YGN-D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred c-CCC-C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 1 111 1 11123467999999999974 3469999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 748 GEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 748 G~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
|+|+++++.+++|++|+||||||++|+|||||||+++. +++|++++++++.+++++++++||+||||.+||+|.+|||
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 99999999999999999999999999999999999985 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 907 (930)
||||||||||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHhhhhc
Q 040875 908 SLLAKGPAGAYYSLVSLQTAEQ 929 (930)
Q Consensus 908 eLl~~~~~g~y~~l~~~~~~~~ 929 (930)
||++ +++.|+++++.|....
T Consensus 560 ~L~~--~~~~y~~l~~~~~~~~ 579 (592)
T PRK10790 560 QLLA--AQGRYWQMYQLQLAGE 579 (592)
T ss_pred HHHh--CCCHHHHHHHHHhhhc
Confidence 9998 6799999999886543
No 23
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.5e-84 Score=784.04 Aligned_cols=568 Identities=26% Similarity=0.413 Sum_probs=496.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+.+++...++++..+....+.+++..++....++++..+++....... ......+...++++.++..++.+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 202 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYL 202 (694)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665555666666666666666666666777888888876542211 1122234445556666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|.++|++++++|+.||+ ++++|++++|+ +|++.+++++...+..++..+..+++.++++++++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 203 FAHLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 78999999999 6999999988777777666666666667888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
++++++++.|+.++......+..++..++..+..++..+.+.|+++|+++||+++.|+.+.++|++..++..+...+..+
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777766666777777888889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
..........++..+..++++++|++++..|.+++|.++++..+......|+..+...+..++++..+.+|+.++++.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++.. ....+...+.|+++||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++
T Consensus 440 e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 440 EPRSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred CccCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 322111 11112234789999999999743 346999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++++||||||++|+|||||||.++.+ +.++++++++++.++++|++.++|+||||.+||+|.+||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 9999999999999999999999999999999999999875 689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
||||||++|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHhh
Q 040875 907 ESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~~ 926 (930)
+||++ ++|.|++|++.|.
T Consensus 676 ~~l~~--~~~~y~~l~~~~~ 693 (694)
T TIGR01846 676 EELLA--LQGLYARLWQQQS 693 (694)
T ss_pred HHHHH--cCChHHHHHHhhc
Confidence 99998 6799999998764
No 24
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.1e-83 Score=765.51 Aligned_cols=567 Identities=33% Similarity=0.530 Sum_probs=503.3
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 350 RLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAY 429 (930)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (930)
+++...++.++.+..+.+.+++.+.+.+..++.++.+++....... ......+...++++.++..++.+.+.+....
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 80 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667777777777788888887778877777765443211 1112223445666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 430 TGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLAL 509 (930)
Q Consensus 430 ~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 509 (930)
.+.++...+|..+++++++.|.++|+ +.++|++.+|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999997 6789999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040875 510 VIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAG 589 (930)
Q Consensus 510 v~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (930)
++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+++.++++.+++++..++..+...+......
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888877778777888888899999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 040875 590 ICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKIN 669 (930)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 669 (930)
....+...+..+...+++++|+.++..|.+++|.++++..+......|+..+...+..+.++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999987543321
Q ss_pred CCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc
Q 040875 670 PEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE 749 (930)
Q Consensus 670 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~ 749 (930)
... . ..++..+.|+++||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+
T Consensus 319 ~~~--~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT--R-AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC--C-CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 111 1 111234679999999999754 457999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 750 DIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 750 di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
|+++++.+++|++++||||||++|+|||||||.++.+++.+|++++++++.+++++++.++|+||||++||+|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 99999999999999999999999999999999998754689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 909 (930)
|||||||||++++|+|++||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|+||
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccCCCcHHHHHHHHhhh
Q 040875 910 LAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 910 l~~~~~g~y~~l~~~~~~ 927 (930)
++ .++.|+++++.+.+
T Consensus 555 ~~--~~~~~~~~~~~~~~ 570 (571)
T TIGR02203 555 LA--RNGLYAQLHNMQFR 570 (571)
T ss_pred HH--cCCHHHHHHHHhhc
Confidence 97 57899999887643
No 25
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-84 Score=702.47 Aligned_cols=544 Identities=27% Similarity=0.430 Sum_probs=453.9
Q ss_pred HHHHHHHHHHHHHHHHhccCChh-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 040875 374 AVQPVYAFAMGSMISVYFLKDHD-EIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVG 452 (930)
Q Consensus 374 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 452 (930)
.+....+.++...++..-..+.. .........+..|.++.++..+++-++.+++.++.++..+..-.+.|++.+.++.+
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44444556666665543211111 11122233466778888889999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 453 WFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMS-LIISWRLALVIIAVQPLVIVCLYGKEVLLKR 531 (930)
Q Consensus 453 ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~ 531 (930)
+|. ...+|.+.+.+.+....+...+......++..++.+......+ .-.++..+++.+..+.....+......+..+
T Consensus 124 ~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 124 FFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred hhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 997 5779999999999998888777766666665554443333222 2233444444444433444333334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 532 MSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGG 611 (930)
Q Consensus 532 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 611 (930)
.+++..++.+...+.+.+++.|.++||+||.|++..++|+....+..+...+.....++....-..+.....+.+.+.|.
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888889999999999999999999999999999999999999888888877788877777777777777777887
Q ss_pred HHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEE
Q 040875 612 RLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVH 691 (930)
Q Consensus 612 ~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvs 691 (930)
.=+..+.+++|+++.....+.....++..+...+.++.++..-+...+...+...+.... ..++...++.|+|+||+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEeeE
Confidence 778899999999999999999999999999999999888888888777665432222111 01122244689999999
Q ss_pred EEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC
Q 040875 692 FAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA 771 (930)
Q Consensus 692 f~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~ 771 (930)
|+|+ |+.++|+|+||+|++||||||||+|||||||++++|+||++ ++|+|+|||+|+++++++.+|+.|++||||.+
T Consensus 359 f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 359 FSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV 435 (591)
T ss_pred EEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc
Confidence 9996 35569999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeecc
Q 040875 772 LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEA 851 (930)
Q Consensus 772 LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEa 851 (930)
||++||-+||.||++ .+++||+.++|+++++||.|.++|+||+|.|||+|..||||||||++||||++++|+|+++|||
T Consensus 436 LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 436 LFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred ccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 999999999999997 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhhh
Q 040875 852 TSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAE 928 (930)
Q Consensus 852 TSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~~ 928 (930)
||+||.+||+.+.++|.+...++|+|+|+||++++++||+|++||+|+|+|+|+|+||++ +.+.|+++|..|...
T Consensus 515 TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~--~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA--PSELYADLWTTQTSS 589 (591)
T ss_pred ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh--hhhHHHHHhcccccc
Confidence 999999999999999999889999999999999999999999999999999999999998 789999999887643
No 26
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-87 Score=703.80 Aligned_cols=504 Identities=30% Similarity=0.444 Sum_probs=423.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Q 040875 416 SLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITI 495 (930)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~ 495 (930)
..+++-++.|+...+.+...+.+...+|+|+..+++.|+- .+.+|+.+.-+.+....+. ++.....++.-.+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 3566777888777888889999999999999999999996 5779999988888777765 444444444444444444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHH
Q 040875 496 AFTMS-LIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQ 574 (930)
Q Consensus 496 ~~~~~-~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~ 574 (930)
+++.. ...+|+.+++++.+..+.+.......-...+.+++......+......+++-|.+|+|-|+.|+...++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 44433 34588888888776555443322111111223444444455566677889999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 575 EAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNA 654 (930)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (930)
..+.+...+...--.++...-..+..+.......+..+.+..+..++|+++.+..+++...+|+..++.+...+++...-
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 88877666655544445544455555555555556667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 040875 655 VASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE 734 (930)
Q Consensus 655 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~ 734 (930)
+++++++++++++.... |...+.....|.|+|+||+|.|+ |.+|||+||||+++||+++|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVvd~-P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDL-PGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhhcC-CCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 99999999876544322 22222233568999999999995 5678999999999999999999999999999999999
Q ss_pred cccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCcccc
Q 040875 735 RFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGY 814 (930)
Q Consensus 735 rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gl 814 (930)
||||.++|.|.|||+||+++..++||++||+||||.+||++||.+||.|+.+ .+++||+.+|++.+++||.|.++|+||
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 9999999999999999999999999999999999999999999999999987 789999999999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEE
Q 040875 815 DTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 815 dt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
+|.|||+|..||||||||+||||+++++|.|++|||||||||..||+.||.++.+.+++||.|+|||||+||.+||.|+|
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 895 LEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 895 l~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+++|+|+|.|+|+||+++ .+|.|++||+.|+.
T Consensus 745 i~~G~IvErG~HeeLl~r-dgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKR-DGGAYADMWQAQQA 776 (790)
T ss_pred EeCCeEeecCcHHHHHhc-cCCcHHHHHHHHHh
Confidence 999999999999999984 59999999976654
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.6e-82 Score=754.72 Aligned_cols=566 Identities=27% Similarity=0.413 Sum_probs=480.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 427 (930)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (930)
+++++.+.++.+..+.+..+.+++..++....++.++.+++..... .....+...++++.++..+..+...+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666667777777777777777788888888754321 1111222333333344444444445455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 428 AYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRL 507 (930)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 507 (930)
.....++..+++.++|+++++.|+.+|+ +.++|++++|+++|++.+.+.+...+..++..++..++.+++++..+|.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL 158 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667778999999999999997 68899999999999999988777777777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040875 508 ALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWI 587 (930)
Q Consensus 508 ~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 587 (930)
+++++++.|+..++.....+..++..++..+..++....+.|.++|+++||.|+.++.+.+++.+..++..+...+....
T Consensus 159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
T PRK13657 159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW 238 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887877776666666666666777777888899999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040875 588 AGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTK 667 (930)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 667 (930)
........+++..+...+++++|++++.+|.+++|.++++..+......++..+...+..+..+..+.+++.++.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (588)
T PRK13657 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777778888888888899999999999999999999999998888999999999999999999999999998876433
Q ss_pred CCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC
Q 040875 668 INPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 747 (930)
Q Consensus 668 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id 747 (930)
.+ +.+....++...+.|+++||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.+|
T Consensus 319 ~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 319 VR-DPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred cC-CCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 21 111111111233579999999999743 459999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 748 GEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 748 G~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
|+|+++++.+++|++|+||||||++|+|||||||+++.+ +.+|++++++++.+++++++.++|+|+||.+|++|.+|||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 999999999999999999999999999999999999865 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 907 (930)
||||||||||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||||++|++|+++|.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHhhh
Q 040875 908 SLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 908 eLl~~~~~g~y~~l~~~~~~ 927 (930)
||++ +++.|++|++.+..
T Consensus 555 ~l~~--~~~~y~~l~~~~~~ 572 (588)
T PRK13657 555 ELVA--RGGRFAALLRAQGM 572 (588)
T ss_pred HHHH--CCChHHHHHHHhhc
Confidence 9997 67999999986643
No 28
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-82 Score=687.64 Aligned_cols=557 Identities=22% Similarity=0.322 Sum_probs=453.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 356 IREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYS--LCFFGLSIFSLLTNVCQQYYFAYTGEY 433 (930)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (930)
++++..+.++++.+++........-.+-|+.++........ ....+|. ...=++++...+..+...........+
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~---~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~Atfr 88 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA---YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFR 88 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33556666666655554443333333344444322111110 1111222 222346777778888888888888899
Q ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 434 LTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIA 513 (930)
Q Consensus 434 ~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~ 513 (930)
+-..+|.++|+++...++.-.. .-.+|+++||+..|++.+|+.+-..+...+..+....+..+...+++|.+++.+..
T Consensus 89 vL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 89 VLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999988887765 57799999999999999999998888888888777766666666778877665543
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040875 514 V-QPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICL 592 (930)
Q Consensus 514 ~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (930)
. ..++++......++-++..++..........++.|.+.|....+.||.++.+.+.+.+..+...+...+...+.++.+
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334444555666666677777788888899999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 040875 593 AFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAG-TMTTDIAKGSNAVASVFAVLDRDTKINPE 671 (930)
Q Consensus 593 ~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 671 (930)
....++..+.....+.+.+..+..|..+................++..+. ..+.+..+...+..|+.++.+.+++...+
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~ 326 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP 326 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC
Confidence 88888887777744444444555666664333333333344455555555 66788888999999999998876554332
Q ss_pred CCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC
Q 040875 672 DPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI 751 (930)
Q Consensus 672 ~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di 751 (930)
.++ .+. ....++++||+|+||++ +.++|+|+||++++||||||+|||||||||++++|.|-|+|++|+|..+|+|+
T Consensus 327 ~~~--~~~-~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 327 DEQ--TAT-TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402 (573)
T ss_pred ccc--cCC-ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence 111 111 11279999999999975 56799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 752 RSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 752 ~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+.++.+++|+.+++++|.++||+||+|+||.++.| ++||||+|+++++++|++++++.|+||+|++||+|.+|||||||
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 99999999999999999999999999999999987 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+||||+|++|++++||||||.+||++||+.|.+.|.+..+|||+|+||||+.-+.+||||+|||+|+++|+|+|+||++
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcHHHHHHHH
Q 040875 912 KGPAGAYYSLVSL 924 (930)
Q Consensus 912 ~~~~g~y~~l~~~ 924 (930)
++|.|++|.+.
T Consensus 562 --~~g~~~~l~q~ 572 (573)
T COG4987 562 --NNGRYKRLYQL 572 (573)
T ss_pred --cccHHHHHhcc
Confidence 78999999764
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.1e-81 Score=750.99 Aligned_cols=569 Identities=33% Similarity=0.528 Sum_probs=489.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 349 RRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFA 428 (930)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (930)
+.++++.++.+..+.+..+..++...+....++.++.+++..+.... ......+..+++++.++..+..+.+.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVT 83 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666777777777778888888875432211 111222334444555556667788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 429 YTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLA 508 (930)
Q Consensus 429 ~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 508 (930)
..+.++...+|..+++++++.|..+|+ +.++|++.+|+++|++.+++.+...+..++..+..+++.+++++.++|+++
T Consensus 84 ~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 84 WLGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999997 577899999999999999998888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040875 509 LVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIA 588 (930)
Q Consensus 509 lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (930)
+++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+++.++.+.+++++..++..+...+.....
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777767777777778888888889999999999999999999999999999999998888777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040875 589 GICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKI 668 (930)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 668 (930)
.........+..+...+++++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 66666666666677777888999999999999999999999888899999999999999999999999999998764332
Q ss_pred CCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 669 NPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 669 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
+....+...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|.+||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 21111111111223579999999999864335799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 749 EDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 749 ~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
+|+++++.+++|++++|+||||++|+|||||||.++.+ +.+|++++++++.++++++++++|+|+||++||+|.+||||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 99999999999999999999999999999999999875 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 908 (930)
||||++||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++.+..||||++|++|+++|.|+|++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhccCCCcHHHHHHHHh
Q 040875 909 LLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 909 Ll~~~~~g~y~~l~~~~ 925 (930)
|++ +++.|++|++.|
T Consensus 561 l~~--~~~~~~~l~~~~ 575 (576)
T TIGR02204 561 LIA--KGGLYARLARLQ 575 (576)
T ss_pred HHH--cCChHHHHHhhc
Confidence 997 789999999876
No 30
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.6e-82 Score=747.14 Aligned_cols=523 Identities=23% Similarity=0.288 Sum_probs=444.2
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 040875 350 RLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFY--SLCFFGLSIFSLLTNVCQQYYF 427 (930)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 427 (930)
+++++.+++++.+....+.+++...+....+++++.+++.....+ . ....+ ...++++.+...++.++..++.
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP-P----VLYLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666666666666666677777888777543211 1 11111 1112234455667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 428 AYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRL 507 (930)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 507 (930)
...+.++..++|.++|+++++.|..||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+
T Consensus 78 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 78 HDAALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8899999999999999999999999997 78899999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 508 ALVIIAVQPLVIVCL-YGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 508 ~lv~~~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
++++++..|+..++. ....+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887767665544 3334444444556667778889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+...+++++|++++..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888999999999999999999999888888889999999999999999999999999997654
Q ss_pred CCCCCCCC-CCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 040875 667 KINPEDPK-GYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 745 (930)
Q Consensus 667 ~~~~~~~~-~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~ 745 (930)
+.+....+ ....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 32211111 10111223679999999999753 3599999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 746 IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 746 idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+||+|++++ .+++|++++||||||+||+|||||||++|.+ +.+||++++|++.++++|+|.+||+||||+|||+|.+|
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 999999999 9999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRL 883 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl 883 (930)
|||||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999988999999999996
No 31
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.1e-81 Score=745.44 Aligned_cols=544 Identities=24% Similarity=0.355 Sum_probs=468.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 040875 373 GAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVG 452 (930)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 452 (930)
.++....+++++.+++........ ......|..+++++.++..++.+++.++....+.+...++|.++|++++++|++
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 334444566677777754322111 112233455555555666777788888888899999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 453 WFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMS-LIISWRLALVIIAVQPLVIVCLYGKEVLLKR 531 (930)
Q Consensus 453 ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~ 531 (930)
+|+ ++++|++++|+++|++.++......+..++..++..++.++++ +.++|.+++++++..|+..++.....+..++
T Consensus 86 ~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 86 FYL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 6889999999999999998777777777777655555554444 5789999998888888887777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 532 MSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGG 611 (930)
Q Consensus 532 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 611 (930)
..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++..++..+...+..+..............+...+++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788889999999999999999999999999999999888888888887777777777777777778889999
Q ss_pred HHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEE
Q 040875 612 RLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVH 691 (930)
Q Consensus 612 ~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvs 691 (930)
+++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.++.. ...+...+.|+++||+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEE
Confidence 9999999999999999999998999999999999999999999999999987653321111 1112234679999999
Q ss_pred EEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC
Q 040875 692 FAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA 771 (930)
Q Consensus 692 f~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~ 771 (930)
|+|++. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++++||||+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999753 4569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeecc
Q 040875 772 LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEA 851 (930)
Q Consensus 772 LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEa 851 (930)
+|+|||||||+++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||
T Consensus 400 lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEp 478 (569)
T PRK10789 400 LFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDA 478 (569)
T ss_pred eccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 999999999999865 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 852 TSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 852 TSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+||++ ++|.|++|++.|..
T Consensus 479 ts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~y~~l~~~~~~ 552 (569)
T PRK10789 479 LSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ--QSGWYRDMYRYQQL 552 (569)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH--cCChHHHHHHHhhh
Confidence 999999999999999999888999999999999999999999999999999999999997 67999999987754
No 32
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7e-81 Score=741.66 Aligned_cols=565 Identities=26% Similarity=0.374 Sum_probs=482.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYF 427 (930)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (930)
+++++++.+++++.+....+.+++..++....+++++.+++.....+. ...+...+++..++..+..++..+..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777888888888888888999988886543211 11122222233334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 428 AYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRL 507 (930)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 507 (930)
.....++..++|.++|++++++|++||+ ++++|++++|+++|++.+.+.+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777778999999999999997 67899999999999999998888777777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040875 508 ALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWI 587 (930)
Q Consensus 508 ~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 587 (930)
+++++++.|+.++......+..++..++..+..++..+.+.|+++|+++||+|+.++.+.+++++..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777776666666666677777788889999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040875 588 AGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTK 667 (930)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 667 (930)
......+...+..+...+++++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777777888889999999999999999999998888888899999999999999999999999999876433
Q ss_pred CCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC
Q 040875 668 INPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 747 (930)
Q Consensus 668 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id 747 (930)
.+..... ...+...+.|+++||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+|
T Consensus 319 ~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPADA-PELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCccC-CCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 2111110 0111224579999999999743 358999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 748 GEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 748 G~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
|+|+++++.+++|++++||||||++|++||||||.++.+ +.+|++++++++.+++++++.++|+|+||.+|++|.+|||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 999999999999999999999999999999999999865 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 907 (930)
|||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHhh
Q 040875 908 SLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 908 eLl~~~~~g~y~~l~~~~~ 926 (930)
||++ ++|.|+++++.+.
T Consensus 555 ~l~~--~~~~y~~l~~~~~ 571 (585)
T TIGR01192 555 ELIQ--KDGRFYKLLRRSG 571 (585)
T ss_pred HHHH--CCChHHHHHHhCc
Confidence 9998 6899999998774
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.7e-81 Score=797.92 Aligned_cols=568 Identities=27% Similarity=0.479 Sum_probs=499.1
Q ss_pred HHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLALN-IREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 348 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
+..++++. ..++..+.++.+++++.+...|+++++++.+++.+... .....+++.+++++++..++.+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~ 120 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG------ENVNDIIFSLVLIGIFQFILSFISSFC 120 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555553 34566778888999999999999999999999865321 112234555666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
+.+.+.++..++|.++|++++++|+.||| .+++|++.+|+++|++.+.+.+...+..++..++++++.++++++.+|+
T Consensus 121 ~~~~~~~~~~~lR~~~~~~ll~~~~~~fd--~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~ 198 (1466)
T PTZ00265 121 MDVVTTKILKTLKLEFLKSVFYQDGQFHD--NNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNAR 198 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++++|+++++..+..+.++...++..+..++....+.|++.|+++||+|+.|+.+.++|++..+...+...+...
T Consensus 199 Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~ 278 (1466)
T PTZ00265 199 LTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANF 278 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888877777777777778899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARG--------YINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASV 658 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 658 (930)
..++...+..++.++..++++|+|++++..| .+++|.+++++.........+..+...+..+.++..+.+|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri 358 (1466)
T PTZ00265 279 MESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSL 358 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888899999999999999986 57888888777666665666667777888999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 659 FAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
+++++.+++.++.. .....+. .+.|+|+||+|+||++++.++|+|+||+|++||++||||+||||||||+++|.|+|+
T Consensus 359 ~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 436 (1466)
T PTZ00265 359 YEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436 (1466)
T ss_pred HHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 99998765433211 1111111 247999999999987655679999999999999999999999999999999999999
Q ss_pred CCCcEEEE-CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCC-------------------------------
Q 040875 739 PLKGVVKI-DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGAS------------------------------- 786 (930)
Q Consensus 739 ~~~G~I~i-dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~------------------------------- 786 (930)
|++|+|++ ||.|+++++.+++|++|+||||+|.||++||+|||.+|.+
T Consensus 437 p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1466)
T PTZ00265 437 PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRA 516 (1466)
T ss_pred CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccc
Confidence 99999999 5799999999999999999999999999999999998631
Q ss_pred -------------------------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 787 -------------------------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 787 -------------------------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
.+.+|++++++++.+++++|+.+||+||||.+|++|.+|||||||||+|||||++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~ 596 (1466)
T PTZ00265 517 KCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIR 596 (1466)
T ss_pred cccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhc
Confidence 1357789999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCC---------------------
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQG--------------------- 898 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G--------------------- 898 (930)
+|+|||||||||+||+++++.|++.|++.. +|+|+|+||||+++++.||+|+||++|
T Consensus 597 ~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~ 676 (1466)
T PTZ00265 597 NPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKE 676 (1466)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccc
Confidence 999999999999999999999999999886 489999999999999999999999986
Q ss_pred --------------------------EEEEecChhHHhccCCCcHHHHHHHHhh
Q 040875 899 --------------------------RVVEEGSHESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 899 --------------------------~ive~G~~~eLl~~~~~g~y~~l~~~~~ 926 (930)
+|+|+|+|+||+++ ++|.|+.|++.|.
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~-~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 677 NNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKN-KNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccCCceeEeeCCHHHHHhc-cCCcHHHHHhhhc
Confidence 59999999999973 6899999998774
No 34
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-83 Score=674.09 Aligned_cols=491 Identities=31% Similarity=0.470 Sum_probs=425.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHH
Q 040875 425 YYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITI-AFTMSLII 503 (930)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 503 (930)
.++...++.....+--+.|.|+..+++.|+- +..+|.+...+.+..+.++..+...+...+..++-+.. .+++....
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4456677777888888899999999999986 56778777777667766766666666555555554433 33344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Q 040875 504 SWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVR 583 (930)
Q Consensus 504 ~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 583 (930)
+|+.+.+.++++.+++++...........+++..++++.......+++-+.+|+|.|+.|+.+..+|++..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 88888888777666666554433333345666777788888999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040875 584 QSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLD 663 (930)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 663 (930)
...-..++...-..+...........+..-+..|.+++|+++....++.....|+..++....++.++...+++.+++.+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77767777777777777777777888888999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCC-CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 040875 664 RDTKINPEDPKGYRPE-KITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742 (930)
Q Consensus 664 ~~~~~~~~~~~~~~~~-~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G 742 (930)
.+.+... .+..++.. ...|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||++++|+|||++++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 6543321 11111111 3458899999999995 456799999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCC
Q 040875 743 VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822 (930)
Q Consensus 743 ~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G 822 (930)
.|.+||+|+++...+.+|+.||+||||.+||++|+..|+.||.+ ..+++|++.|++.+++++||+++|+||||.|||+|
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999999987 78999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEE
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVE 902 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 902 (930)
..||||||||+||||++|++|+||+|||||||||.+||+.||.+|++..+|+|.++|||||+||.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhccCCCcHHHHHHH
Q 040875 903 EGSHESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 903 ~G~~~eLl~~~~~g~y~~l~~ 923 (930)
.|+|+||++ .+|.|++||.
T Consensus 478 rg~h~~ll~--~~g~ya~mw~ 496 (497)
T COG5265 478 RGTHEELLA--AGGLYAEMWR 496 (497)
T ss_pred cCcHHHHHH--cCChHHHHhc
Confidence 999999998 6999999996
No 35
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3e-79 Score=723.83 Aligned_cols=526 Identities=25% Similarity=0.334 Sum_probs=453.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 361 QASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRK 440 (930)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (930)
.+..+.+++++.+++.+..+++.+++++........ ......+...++++.++..++.+++.+.....+.++..++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777778888888888888765322111 122334455566667777888899999999999999999999
Q ss_pred HHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 441 NMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIV 520 (930)
Q Consensus 441 ~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~ 520 (930)
.+|+++++.|..+|+ +.++|++++|+++|++.+++.+...+..++..+...++.+++++.++|.+++++++..|+..+
T Consensus 82 ~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999997 689999999999999999998888888888888888888888889999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 521 CLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVS 600 (930)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (930)
+.....+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..+..........++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777788888999999999999999999999999999999988888877777777766666666666
Q ss_pred HHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 040875 601 CVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEK 680 (930)
Q Consensus 601 ~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 680 (930)
+...++..+++..+..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.+++..+ ..+ .+..
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~~--~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KAP--VTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcC--CCCC
Confidence 6666665666677779999999999888888888889999999999999999999999999974322111 111 1111
Q ss_pred CCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhh
Q 040875 681 ITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 681 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 760 (930)
..+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999854 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 761 RHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
++++||||||++|+|||||||.++.+ +.+|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999865 57899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVL 895 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl 895 (930)
++|+|+|||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999988899999999999999999999986
No 36
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-77 Score=707.99 Aligned_cols=536 Identities=23% Similarity=0.304 Sum_probs=455.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 359 WKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRI 438 (930)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 438 (930)
++.+....+.+++...+....++.++.+++....... ......+..+++++.++..++.+++.+.....+.++..++
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666777888888875542211 1122234455555666677888889999999999999999
Q ss_pred HHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 439 RKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGD-RVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPL 517 (930)
Q Consensus 439 ~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl 517 (930)
|.++|+++++.|+..+ +...+++.+|++.+++.+.. .+..++..++.++ .+++++.++|++++++++..|+
T Consensus 82 r~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998432 45678899999999987766 4555555544443 3456788899998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040875 518 VIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRS 597 (930)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (930)
.++...+..+..++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+..............
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666667777788888999999999999999999999999999999999888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040875 598 LVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYR 677 (930)
Q Consensus 598 ~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 677 (930)
+..+...+++++|++++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.++. . .
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~-~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---M-P 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---C-C
Confidence 77777888889999999999999999999999988899999999999999999999999999999764332111 1 1
Q ss_pred CCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 678 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
.+...+.|+++||+|+||+. +.++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||+|+.+++.+
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 11233679999999999753 34689999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++|++++||||||++|++|+||||.++.+ +.++++++++++.++++++++++|+|+||.+||+|.+||||||||++|||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999997654 57999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999999875 6899999999999999999999999999999999999985
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.8e-73 Score=673.04 Aligned_cols=534 Identities=17% Similarity=0.176 Sum_probs=431.3
Q ss_pred HHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNI-REWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQY 425 (930)
Q Consensus 347 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (930)
.++++++..+ ++++.+.++.+.+++.+......+..++.+++.... . ... ....++++.++..++.+...+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~---~--~~~---~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF---L--GQG---SLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---c--cch---HHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777 777877777777777777666666666655532100 0 000 111233344555677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 426 YFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISW 505 (930)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (930)
.....+.++..++|.++|++++++|+.||+ +.++|++++|+++|++.+++.+.. +..++..+..+++.++++++.+|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 889999999999999999999999999997 688999999999999999988754 66677777777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHH--HHHHHHHHHHHhHHHHHHH
Q 040875 506 RLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQE--RILKMLEKAQEAPRREGVR 583 (930)
Q Consensus 506 ~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~ 583 (930)
.+++++++.+|+.++......+..++...+..+..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888888877766655555555566677777888999999999999999999854 4567777777777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040875 584 QSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLD 663 (930)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 663 (930)
.............++..+..++.+++++.. |.+++|.++++..++.....|+..+...+..++++..+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554444444444444444444445555443 78999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCC--CCC-CC----CCCCCCccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 040875 664 RDTKINPE--DPK-GY----RPEKITGHIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE 734 (930)
Q Consensus 664 ~~~~~~~~--~~~-~~----~~~~~~g~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~ 734 (930)
.+.+.++. .+. .. .+....+.|+++||+|+|++.+ +.++|+|+||++++||++|||||||||||||+++|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 32111111 010 00 1112236799999999997532 236999999999999999999999999999999999
Q ss_pred cccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCcccc
Q 040875 735 RFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGY 814 (930)
Q Consensus 735 rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gl 814 (930)
|+|+|++|+|.+||+|+++++.+++|+++++|||||++|++|+++|+ . + +.++++++++++.++++++++++|+||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~-~-~~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G-E-HASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c-c-chhHHHHHHHHHHcCCchhhccccccc
Confidence 99999999999999999999999999999999999999999999996 2 2 568899999999999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHH-H-cCCCeEEEEccCchhhhccCEE
Q 040875 815 DTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALER-L-MVGRTSVVVAHRLSTIQNCDMI 892 (930)
Q Consensus 815 dt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~-~-~~~~TvI~IaHrl~ti~~~DrI 892 (930)
||. .+|||||||||+||||++++|+|||||||||+||+++++.+++.+.+ . .+++|+|+||||++++..||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 995 78999999999999999999999999999999999999999887643 3 4689999999999999999999
Q ss_pred EEEeCCEEEEe
Q 040875 893 AVLEQGRVVEE 903 (930)
Q Consensus 893 ~vl~~G~ive~ 903 (930)
+||++|+++|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999975
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2e-73 Score=611.77 Aligned_cols=529 Identities=25% Similarity=0.326 Sum_probs=452.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040875 369 AILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILT 448 (930)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 448 (930)
+.+..++....+.++-++.|....+.. .........+.+++.++..++..++.+.+.+++.++..+++..+|...++
T Consensus 32 S~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~ 108 (580)
T COG4618 32 SAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFS 108 (580)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 334444444445555555554432211 11222333444556667788899999999999999999999999999876
Q ss_pred CCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 449 FEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVL 528 (930)
Q Consensus 449 ~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~ 528 (930)
++.. .+..|+=.+-+ +|.+.++.++...-...+...-.+.+.+.++|.++++++++.++...+++.+.++..+.
T Consensus 109 ~~l~-----~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~ 182 (580)
T COG4618 109 APLL-----RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERA 182 (580)
T ss_pred hHHh-----hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654 23344444444 79999999987754444444556677888889999999999998888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 529 LKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFW 608 (930)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (930)
.++..++..+.....+.+...+.+|.++|++.|+.....++|.+....+.....+..-..+.+...+..+-+.....++.
T Consensus 183 t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg 262 (580)
T COG4618 183 TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLG 262 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77766777777788888999999999999999999999999999999998888888888888999999999999999999
Q ss_pred HHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEE
Q 040875 609 YGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQ 688 (930)
Q Consensus 609 ~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 688 (930)
.|.+++.+|++|.|.+++....+.....|+......|.++..+..+..|+.++++..+...+ .-+.+..+|.+.++
T Consensus 263 ~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve 338 (580)
T COG4618 263 LGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVE 338 (580)
T ss_pred cceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEe
Confidence 99999999999999999999888889999999999999999999999999999976543221 12223456899999
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEcc
Q 040875 689 YVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQ 768 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 768 (930)
++++.=|+. .+|+|+|+||+++|||-+||+||||||||||.++|.|.++|.+|.|++||-|+++++.+++-++|+|.||
T Consensus 339 ~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQ 417 (580)
T COG4618 339 RLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417 (580)
T ss_pred eeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcc
Confidence 999976654 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEe
Q 040875 769 EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLL 848 (930)
Q Consensus 769 ~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiL 848 (930)
|..||+|||+|||+-..+ +.|++.+.+|++.++.||.|.+||+||||.|||+|..|||||||||+|||||+.+|++++|
T Consensus 418 dVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 418 DVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred cceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 999999999999965432 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhcc
Q 040875 849 DEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 849 DEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
|||-|+||.+-|+.+.++|.+.+ +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999998875 69999999999999999999999999999999999999873
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.4e-71 Score=712.15 Aligned_cols=537 Identities=18% Similarity=0.235 Sum_probs=412.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 360 KQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIR 439 (930)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 439 (930)
+.+..+.+..++...+....|+++..+++.....+. ......++.++++..++..++.....+.....+.++...++
T Consensus 301 ~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~ 377 (1495)
T PLN03232 301 GRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP---AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLV 377 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666667777777764422111 11111222222222222222222122223577888888899
Q ss_pred HHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 040875 440 KNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQP--- 516 (930)
Q Consensus 440 ~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p--- 516 (930)
..+|+++++.+..+++ +.++|+++|++++|++.+++.. ..+..+....+.+++.++++ .+.+++.+++..+
T Consensus 378 ~~i~~k~l~l~~~~~~--~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~~ 451 (1495)
T PLN03232 378 AAIFHKSLRLTHEARK--NFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLILF 451 (1495)
T ss_pred HHHHHHHhcCChhhcC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Confidence 9999999999999886 6789999999999999999875 33333333333333322222 1223332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040875 517 LVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSR 596 (930)
Q Consensus 517 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (930)
+++.......+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+.......+..
T Consensus 452 l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1495)
T PLN03232 452 LLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILN 531 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222334455666677778888899999999999999999999999999999999888877777666665554433322
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 040875 597 SLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGY 676 (930)
Q Consensus 597 ~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 676 (930)
... ....++++|++++..|.++++.+++++.+......|+..+...+..+.++..+.+|+.++++.+++.....++
T Consensus 532 ~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~-- 607 (1495)
T PLN03232 532 SIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPP-- 607 (1495)
T ss_pred HHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCC--
Confidence 222 1233467788888899999999999998888888899999999999999999999999999764322111111
Q ss_pred CCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH
Q 040875 677 RPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL 756 (930)
Q Consensus 677 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 756 (930)
.....+.|+++|++|+|++++++++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 608 -~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~----------- 675 (1495)
T PLN03232 608 -LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV----------- 675 (1495)
T ss_pred -cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------
Confidence 11123579999999999865456799999999999999999999999999999999999999998763
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++|++++||||+|+||+|||||||.+|. ++++++++++++.|+++++++.||+|+||.|||+|.+||||||||||||
T Consensus 676 -~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 676 -VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred -EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 4688999999999999999999999996 4799999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLV-QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPA 915 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i-~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~ 915 (930)
||++++|+|+||||||||||+++++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||++ ++
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~--~~ 830 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK--SG 830 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh--cc
Confidence 999999999999999999999999977 455776678999999999999999999999999999999999999997 67
Q ss_pred cHHHHHHHHhh
Q 040875 916 GAYYSLVSLQT 926 (930)
Q Consensus 916 g~y~~l~~~~~ 926 (930)
+.|+++++.+.
T Consensus 831 ~~~~~l~~~~~ 841 (1495)
T PLN03232 831 SLFKKLMENAG 841 (1495)
T ss_pred hhHHHHHHhcc
Confidence 89999987654
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-70 Score=708.29 Aligned_cols=539 Identities=19% Similarity=0.231 Sum_probs=410.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 359 WKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRI 438 (930)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 438 (930)
++.+..+.+..++..++....|+++..+++.....+. ......++.++++..++..+......+.....+.++...+
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 376 (1622)
T PLN03130 300 GGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP---AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTL 376 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666677777777764422111 1111112222111112222111111112346778888889
Q ss_pred HHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 439 RKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLV 518 (930)
Q Consensus 439 ~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~ 518 (930)
+..+|+|+++++..+++ +.++|+++|++++|++.+++... .+..+....+.+++.+++++..-...+++.++++.+.
T Consensus 377 ~~~i~~k~L~l~~~~~~--~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~ 453 (1622)
T PLN03130 377 VAAVFRKSLRLTHEGRK--KFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLM 453 (1622)
T ss_pred HHHHHHHHhcCChhhcC--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 67899999999999999998774 3444444433333333332221111122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040875 519 IVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSL 598 (930)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (930)
+.+.....+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+......+...+....
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556666777788888999999999999999999999999999999988877766666555554443332222
Q ss_pred HHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 040875 599 VSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRP 678 (930)
Q Consensus 599 ~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 678 (930)
. ....++++|++++..|.++++.++.++.+......|+..+...+..+.++..+.+|+.++++.++......++ .
T Consensus 534 ~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~---~ 608 (1622)
T PLN03130 534 P--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPP---L 608 (1622)
T ss_pred H--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCc---c
Confidence 2 1334566788888899999999999888888888888888899999999999999999998754321111110 1
Q ss_pred CCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-cEEEECCccCCCCCHH
Q 040875 679 EKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK-GVVKIDGEDIRSYHLR 757 (930)
Q Consensus 679 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~-G~I~idG~di~~~~~~ 757 (930)
....+.|+++|++|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++ |+|.+
T Consensus 609 ~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l----------- 677 (1622)
T PLN03130 609 EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI----------- 677 (1622)
T ss_pred cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------
Confidence 112357999999999986545679999999999999999999999999999999999999999 99974
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
|++|+||||+|+||+|||||||.||.+ .++++++++++.|+|+++++.||+|++|.|||+|.+|||||||||||||
T Consensus 678 --~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 678 --RGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred --cCeEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 568999999999999999999999964 6899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLV-QEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAG 916 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i-~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g 916 (930)
|++++|+|+||||||||||+++++.| +++++...+++|+|+||||++++..||+|++|++|+|+|+|+|+||++ +++
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~--~~~ 831 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN--NGP 831 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh--cch
Confidence 99999999999999999999999876 567777778999999999999999999999999999999999999997 678
Q ss_pred HHHHHHHHh
Q 040875 917 AYYSLVSLQ 925 (930)
Q Consensus 917 ~y~~l~~~~ 925 (930)
.|+++++.+
T Consensus 832 ~~~~l~~~~ 840 (1622)
T PLN03130 832 LFQKLMENA 840 (1622)
T ss_pred hHHHHHHhc
Confidence 999998754
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.3e-67 Score=624.83 Aligned_cols=523 Identities=17% Similarity=0.183 Sum_probs=393.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 356 IREWKQASLGCLSAILFGAVQPVY-AFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYL 434 (930)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (930)
+++++.+..+.+.+++..++.... +++.+.+++.... . .. ....+.++.++..+..+++.+.....+.++
T Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (547)
T PRK10522 9 RQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S----LL----VLPEFLGLLLLLMAVTLGSQLALTTLGHHF 79 (547)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c----ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554442 3444555543211 0 00 011112222223445677888888999999
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 435 TKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAV 514 (930)
Q Consensus 435 ~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 514 (930)
..++|.++++++++.|+++|+ ++++|++++|+++|++.+...+. .+..++..++.+++.+++++.++|.+++++++.
T Consensus 80 ~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 80 VYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999997 68899999999999999987654 456677777788888888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccH---HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 040875 515 QPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQ---ERILKMLEKAQEAPRREGVRQSWIAGIC 591 (930)
Q Consensus 515 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (930)
.|+.++..+...+..++..++..+..++..+.+.|.++|+++++ ++.+ +.+.+++++..++..+...+........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSA 235 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 88877766666666666667777888899999999999999996 4433 4567777777777666555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 040875 592 LAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPE 671 (930)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 671 (930)
............++.+++++.. ..+ +.+.+..+..+......|+..+...+..+..+..+.+|+.++.+.+++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 236 VNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3333333222233333333322 112 2233333333333345788889999999999999999999987543221111
Q ss_pred CCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC
Q 040875 672 DPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI 751 (930)
Q Consensus 672 ~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di 751 (930)
+. .+.+..+.|+++||+|+||+ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 313 --~~-~~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 313 --RP-QAFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred --cc-cccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 11 11111357999999999974 34699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 752 RSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 752 ~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
++++.+++|++++||||||++|++|+++| ++ ..++++++++++.+++.+++. +|+|. .+|.+|||||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~--~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GK--PANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHHhhccc---cC--chHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCHHHHH
Confidence 99999999999999999999999999999 32 568889999999998887665 34442 248899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEe-cChhH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE-GSHES 908 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~-G~~~e 908 (930)
|++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchh
Confidence 9999999999999999999999999999999999997654 48999999999999999999999999999997 55544
Q ss_pred Hh
Q 040875 909 LL 910 (930)
Q Consensus 909 Ll 910 (930)
-.
T Consensus 537 ~~ 538 (547)
T PRK10522 537 AA 538 (547)
T ss_pred hh
Confidence 43
No 42
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-66 Score=630.09 Aligned_cols=544 Identities=23% Similarity=0.272 Sum_probs=431.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 358 EWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKR 437 (930)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (930)
.++.+....++..+........|.++...+..+... .........|+..+++..++..++.-...+.....+.++...
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a 276 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA 276 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence 344444444444444444555567777777644322 222233445666666666666666555556667889999999
Q ss_pred HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 438 IRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPL 517 (930)
Q Consensus 438 l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl 517 (930)
+-..+|+|.++++...-. +.+.|+++|.++.|++.+++........+...+..+++...+....+| -+++.+++..+
T Consensus 277 l~~~IY~K~L~ls~~~~~--~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G~~~~il 353 (1381)
T KOG0054|consen 277 LISAIYRKALRLSNSARG--ETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGP-SALAGVAVMVL 353 (1381)
T ss_pred HHHHHHHhhhcCchhhcc--CCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHH
Confidence 999999999999877653 678999999999999999988765544444443333222222222222 34555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040875 518 VIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRS 597 (930)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (930)
++.+..+..+..++.+.+..+..+++.+..+|.++|+++||.|+||+.|.++.++..++..+...+.....++.......
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~ 433 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFF 433 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777888888888999999999999999999999999999999999999999999888888888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040875 598 LVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYR 677 (930)
Q Consensus 598 ~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 677 (930)
...+...+.+..-.. ...+.+++...|.++.+....-.|+..+......+.++..+++|+.+++..++. ++.......
T Consensus 434 ~p~lv~~~tF~~~v~-~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~-~~~~~~~~~ 511 (1381)
T KOG0054|consen 434 SPVLVSVVTFVVFVL-LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL-DPDSVERSP 511 (1381)
T ss_pred HHHHHHHHHHHHHhh-ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CccccccCC
Confidence 555555544433222 445677777788877777777788888888889999999999999999975432 121111011
Q ss_pred CCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 678 PEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 678 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
+.+.+..|+++|.+|++++..+.+.|+||||+|++|+.+||||+.|||||||+++++|-.+..+|++.++|.
T Consensus 512 ~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 512 DEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 222334799999999997643445999999999999999999999999999999999999999999999994
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++||||+|++|+|||||||.||. ++++++.+++++.|+|++.++.||.|..|+|||+|.||||||||||+|||
T Consensus 584 -----iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 -----VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred -----EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 99999999999999999999995 58999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHH-HHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKL-VQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAG 916 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~-i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g 916 (930)
|+++|++|++||+|.||||+++.+. +.++|+...++||+|.|||.++.+++||+|+||+||+|+|.|+|+||++ .++
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~--~~~ 734 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK--SGG 734 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh--cch
Confidence 9999999999999999999998885 5677877789999999999999999999999999999999999999997 678
Q ss_pred HHHHHHHHh
Q 040875 917 AYYSLVSLQ 925 (930)
Q Consensus 917 ~y~~l~~~~ 925 (930)
.|.++.++.
T Consensus 735 ~~~~l~~~~ 743 (1381)
T KOG0054|consen 735 DFAELAHEE 743 (1381)
T ss_pred hHHHHhhcc
Confidence 888885543
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-64 Score=650.73 Aligned_cols=542 Identities=18% Similarity=0.206 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 359 WKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRI 438 (930)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 438 (930)
++.+..+.+..++..++....|+++..+++..... .. .......+++.++++.++..++.....+.....+.++...+
T Consensus 316 ~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 393 (1522)
T TIGR00957 316 GPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDP-MA-PDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAV 393 (1522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666777888777643221 11 11112223334444444444444444455677899999999
Q ss_pred HHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 439 RKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLV 518 (930)
Q Consensus 439 ~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~ 518 (930)
+..+|+|+++++...++ +.++|+++|+++.|++.+.+... .+..+....+.+++++.++.....+.+++.++++++.
T Consensus 394 ~~~iy~K~L~l~~~~~~--~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~ 470 (1522)
T TIGR00957 394 MGAVYRKALVITNSARK--SSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLM 470 (1522)
T ss_pred HHHHHHHHHhCChhhcC--CCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999886 67899999999999999987553 3334444444444443333322222334444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040875 519 IVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSL 598 (930)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (930)
+.......+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+..+...+........
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 550 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667777888888899999999999999999999999999999999988887776666655544433222211
Q ss_pred HHHHHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 040875 599 VSCVVALAFWYGGRLVA--RGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGY 676 (930)
Q Consensus 599 ~~~~~~~~~~~g~~l~~--~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 676 (930)
..+ ...+.++.+.+. .+.++.+..+.++.+......|+..+...+..+.++..+.+|+.++++.++..+.......
T Consensus 551 ~~~--~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~ 628 (1522)
T TIGR00957 551 PFL--VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT 628 (1522)
T ss_pred HHH--HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc
Confidence 111 112223445554 3567888888887777777788999999999999999999999999975432111000000
Q ss_pred CCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH
Q 040875 677 RPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL 756 (930)
Q Consensus 677 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 756 (930)
..+...+.|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 629 ~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 629 IKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699 (1522)
T ss_pred cCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------
Confidence 001112479999999999743 35699999999999999999999999999999999999999999999998
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+++||||+|++|++||||||.+|. ..++++.+++++.|++.+++..+|+|++|.+||+|.+||||||||++||
T Consensus 700 -----~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 700 -----SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred -----EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 599999999999999999999985 3577888999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHH---HcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALER---LMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~---~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
||++++|+|++||||||+||+++++.+.+.+.+ ..+++|+|+||||++.+..||+|++|++|+|++.|+|+|+++
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~-- 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ-- 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh--
Confidence 999999999999999999999999999998863 457899999999999999999999999999999999999997
Q ss_pred CCcHHHHHHHHh
Q 040875 914 PAGAYYSLVSLQ 925 (930)
Q Consensus 914 ~~g~y~~l~~~~ 925 (930)
++|.|+++...+
T Consensus 851 ~~~~~~~l~~~~ 862 (1522)
T TIGR00957 851 RDGAFAEFLRTY 862 (1522)
T ss_pred cchhHHHHHHhh
Confidence 678899888643
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.2e-63 Score=594.50 Aligned_cols=531 Identities=15% Similarity=0.104 Sum_probs=428.2
Q ss_pred HHHHHHHHhhHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWK-----QASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNV 421 (930)
Q Consensus 347 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (930)
.+.+++++.+++|. .+....++.++...+....+++.+.+++.....+..........+.+++++..++..+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566776666665 4555666666667777777888888887665333222222223344455555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040875 422 CQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSL 501 (930)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (930)
+..++......++...+|+..+++....+..+|| + ++|++.+|+++|++.+.+.+...+..++..++.+++..+.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d--~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD--S-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC--C-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888888888888887 3 679999999999999999999999999999888887777666
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHH
Q 040875 502 I-ISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRRE 580 (930)
Q Consensus 502 ~-~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 580 (930)
. .+|.+++++++..|+..+......+...+...+..+..+.......|.+.|+++||+|+.|+.+.+++++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5 899999988888898888888888888888888889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CccCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Q 040875 581 GVRQSWIAGICLAFSRSLVSC--VVALAFWYGGRLVA-R----GYINAKSLFEI-FL---VLVSTGKVIADAGTMTTDIA 649 (930)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----g~~~~g~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 649 (930)
..+...+......+..++... ...+.++.|...+. . |.++.|.++.. .. ++.....++..+.....+++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777543 22223333343332 2 68888876653 22 24456788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC------CCCCC--C--------------CCCCCCCccEEEEEEEEEcCCCCCccceeeee
Q 040875 650 KGSNAVASVFAVLDRDTKIN------PEDPK--G--------------YRPEKITGHIELQYVHFAYPARPDVIIFKGFS 707 (930)
Q Consensus 650 ~~~~~~~~i~~~~~~~~~~~------~~~~~--~--------------~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vs 707 (930)
++..+.+|+.++++.+++.. ++.+. . .......+.|+++||+|+||++ .++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence 99999999999986432211 00000 0 0001123579999999999742 36999999
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCC-
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGAS- 786 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~- 786 (930)
|+|++||++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++||+.++..
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 678999999999999999999998631
Q ss_pred -----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHH
Q 040875 787 -----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861 (930)
Q Consensus 787 -----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~ 861 (930)
.+.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 13578899999999999999987 999999976 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 862 LVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 862 ~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
.+.+.+++. |+|+|+||||++++..||+|++|+.
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999874 8999999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-60 Score=612.08 Aligned_cols=528 Identities=19% Similarity=0.220 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 365 GCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLS 444 (930)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (930)
..+..++..++....|+++..+++.. .............+++.++++.++..++.....|.....+.++...+...+|+
T Consensus 85 ~~~~~~~~~~~~~~~P~ll~~li~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 85 YGILLYFGEATKAVQPLLLGRIIASY-DPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555566677778777643 11111111112234444445555555666666667777888888889999999
Q ss_pred HHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 445 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYG 524 (930)
Q Consensus 445 ~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~ 524 (930)
|+++++...++ +.++|+++|++++|++.+.+.+..... +....+.+++++.+++....+.+++.++++++++++...
T Consensus 164 K~L~l~~~~~~--~~~~g~i~nl~s~Dv~~i~~~~~~~~~-~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 164 KTLKLSSRVLD--KISTGQLVSLLSNNLNKFDEGLALAHF-VWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHhCCHHHhc--CCCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 678999999999999999987654433 333334444444444444445566677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 525 KEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVA 604 (930)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (930)
..+...+..++..+..+++.+...|.++|+++||.+++|+.+.+++++..+...+...+..++......+..... ...
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~ 318 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFV 318 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 777777888888999999999999999999999999999999999999888887777666665543333322222 223
Q ss_pred HHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCc
Q 040875 605 LAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVI-ADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITG 683 (930)
Q Consensus 605 ~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 683 (930)
.++.++++.+..+ .+++.++.++.+......++ ..+...+..+.++..+++|+.++++.++. ++.. . .....
T Consensus 319 ~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~-~~~~-~----~~~~~ 391 (1490)
T TIGR01271 319 VFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY-KTLE-Y----NLTTT 391 (1490)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cccc-c----cCCCC
Confidence 3444555555544 57777777766655555555 35777788889999999999999975422 1111 0 01123
Q ss_pred cEEEEEEEEEcCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH
Q 040875 684 HIELQYVHFAYPARP-------------------------------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGL 732 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-------------------------------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~l 732 (930)
.|+++|++|.|+... ..++|+|+||+|++||.++|+||||||||||+++
T Consensus 392 ~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~ 471 (1490)
T TIGR01271 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMM 471 (1490)
T ss_pred ceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHH
Confidence 699999999995310 1358999999999999999999999999999999
Q ss_pred HhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCcc
Q 040875 733 IERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSE 812 (930)
Q Consensus 733 L~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~ 812 (930)
|+|+++|++|+|.+|| +++||||+|++|++||||||.||. ..++++..++++.|+|.+++..+|+
T Consensus 472 l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l~~l~~ 536 (1490)
T TIGR01271 472 IMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDIALFPE 536 (1490)
T ss_pred HhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHHHhccc
Confidence 9999999999999998 499999999999999999999985 3566778889999999999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhccCE
Q 040875 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQE-ALERLMVGRTSVVVAHRLSTIQNCDM 891 (930)
Q Consensus 813 gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~-~i~~~~~~~TvI~IaHrl~ti~~~Dr 891 (930)
|++|.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ .+++..+++|+|+|||+++.+..||+
T Consensus 537 g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ 616 (1490)
T TIGR01271 537 KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADK 616 (1490)
T ss_pred cccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999987 46777789999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHhccCCCcHHHHHH
Q 040875 892 IAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 892 I~vl~~G~ive~G~~~eLl~~~~~g~y~~l~ 922 (930)
|++|++|++++.|+|+++.+ .++.|.+.+
T Consensus 617 ii~l~~g~i~~~g~~~~l~~--~~~~~~~~~ 645 (1490)
T TIGR01271 617 ILLLHEGVCYFYGTFSELQA--KRPDFSSLL 645 (1490)
T ss_pred EEEEECCEEEEEcCHHHHHh--cChHHHHHH
Confidence 99999999999999999987 456676665
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.2e-59 Score=599.00 Aligned_cols=546 Identities=18% Similarity=0.209 Sum_probs=423.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 356 IREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLT 435 (930)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (930)
+..++.+....+..++..++....|+++..+++.+ .. ++........++..+++..++..++.....+.....+.++.
T Consensus 240 ~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l-~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r 317 (1560)
T PTZ00243 240 AALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFL-DA-DNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYR 317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666777777777788888777643 22 11111111223333444445555555556667788888899
Q ss_pred HHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 436 KRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQ 515 (930)
Q Consensus 436 ~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~ 515 (930)
..+...+|+|+++.+...+..++.++|+++|.++.|++.+.+++... ..+....+.+++++.++.....+.+++.++++
T Consensus 318 ~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl 396 (1560)
T PTZ00243 318 SALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGWCALMAVAVL 396 (1560)
T ss_pred HHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999887775445689999999999999999887544 34444444555544444444444566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 040875 516 PLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFS 595 (930)
Q Consensus 516 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (930)
++++.+.....+......++..+..+++.+...|.++|+++||.+++|+.|.+++++..+...+...+......+...+.
T Consensus 397 ~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~ 476 (1560)
T PTZ00243 397 LVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVN 476 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666667778888899999999999999999999999999999999998888877766666666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CC
Q 040875 596 RSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKI-----NP 670 (930)
Q Consensus 596 ~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~ 670 (930)
.....+...+ .++.+.+..+.++++.++.++.++.....|+..+...+..+.++..++.|+.++++.++.. +.
T Consensus 477 ~~~p~l~~~~--~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 554 (1560)
T PTZ00243 477 NATPTLMIAV--VFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDM 554 (1560)
T ss_pred HHHHHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc
Confidence 4443333332 3456777789999999999999998889999999999999999999999999999653210 00
Q ss_pred CC---------C--C------C---C------------------------------C--CCCCCccEEEEEEEEEcCCC-
Q 040875 671 ED---------P--K------G---Y------------------------------R--PEKITGHIELQYVHFAYPAR- 697 (930)
Q Consensus 671 ~~---------~--~------~---~------------------------------~--~~~~~g~I~~~nvsf~Y~~~- 697 (930)
.+ + . . . . .....+.+.++|++|.+|..
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1560)
T PTZ00243 555 EEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSA 634 (1560)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccc
Confidence 00 0 0 0 0 0 00012357888888875410
Q ss_pred ------------------------------------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 040875 698 ------------------------------------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK 741 (930)
Q Consensus 698 ------------------------------------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~ 741 (930)
.+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~ 714 (1560)
T PTZ00243 635 SRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE 714 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 12358999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCC
Q 040875 742 GVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 742 G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~ 821 (930)
|+|.++ ++++|+||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++
T Consensus 715 G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~ 779 (1560)
T PTZ00243 715 GRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779 (1560)
T ss_pred cEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCC
Confidence 999863 47999999999999999999998743 466778899999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHH-HHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQE-ALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~-~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
|.+||||||||++||||++++|+|+|||||||+||+++.+.+.+ .+....+|+|+|+|||+++.+..||+|++|++|++
T Consensus 780 g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859 (1560)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999998776654 45555679999999999999999999999999999
Q ss_pred EEecChhHHhccCCCcHHHHHHHH
Q 040875 901 VEEGSHESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 901 ve~G~~~eLl~~~~~g~y~~l~~~ 924 (930)
++.|+|+|+++ ++.|.++...
T Consensus 860 ~~~G~~~~l~~---~~~~~~~~~~ 880 (1560)
T PTZ00243 860 EFSGSSADFMR---TSLYATLAAE 880 (1560)
T ss_pred EEecCHHHHHh---ChHHHHHHHh
Confidence 99999999986 3568777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.3e-57 Score=480.83 Aligned_cols=238 Identities=25% Similarity=0.424 Sum_probs=223.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
|.|+|+|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|++||+|+.+++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++||||+|.+|++|+++|+.+. ...+++++|++++.+++.+++..+|++||+.++|+|.+||||||||+|||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~--~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPY--GKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhc--cCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999643 23578899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~ 922 (930)
|+||||||||++||+++++.+++.|++.++++|+|+||||++++..||||++|++|+++|.|+|++|++ .++.|++++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~--~~~~~~~~~ 234 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN--EKSHFKQAI 234 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh--CcHHHHHHH
Confidence 999999999999999999999999999888999999999999999999999999999999999999998 568899998
Q ss_pred HHhh
Q 040875 923 SLQT 926 (930)
Q Consensus 923 ~~~~ 926 (930)
....
T Consensus 235 ~~~~ 238 (275)
T cd03289 235 SPSD 238 (275)
T ss_pred hhcc
Confidence 7654
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-54 Score=416.01 Aligned_cols=218 Identities=34% Similarity=0.563 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC-CCCHHHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR-SYHLRSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 762 (930)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.+|.+|++|+|.+||.++. +.++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999995 346999999999999999999999999999999999999999999999998774 3478999999
Q ss_pred eEEEccCCCCC-cccHHHHhhcCCC--CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALF-AVTVRENITYGAS--DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF-~gTIreNl~~g~~--~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+|+|+|+..|| +-|+.||+.+++- ...+.+ .-.+.|+++||.|..+. .|.+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-----------yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-----------CccccCcHHHHHHHH
Confidence 99999999999 4799999999863 122333 34566888888877654 466999999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccC
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
||||..+|+++++|||||||||+.-..|.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+|++++.+
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~- 226 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN- 226 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC-
Confidence 999999999999999999999999999999999987 49999999999999988 899999999999999999999985
Q ss_pred CCc
Q 040875 914 PAG 916 (930)
Q Consensus 914 ~~g 916 (930)
++.
T Consensus 227 p~~ 229 (240)
T COG1126 227 PKS 229 (240)
T ss_pred CCC
Confidence 443
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-53 Score=429.91 Aligned_cols=228 Identities=35% Similarity=0.542 Sum_probs=197.3
Q ss_pred EEEEEEEEEcCCC--CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---HHHh
Q 040875 685 IELQYVHFAYPAR--PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---LRSL 759 (930)
Q Consensus 685 I~~~nvsf~Y~~~--~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~l 759 (930)
|+++||+..|+.. +...+|+||||+|++||+.||+|+||||||||++++.+|-+|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 1246899999999999999999999999999999999999999999999998887776 6667
Q ss_pred hcceEEEccCCCCCc-ccHHHHhhcCCC-CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 760 RRHVALVSQEPALFA-VTVRENITYGAS-DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
|++|++|+|++.|++ -|+.+|++|... ...+.+ ++.+.|+.+||.|.-+ ..+.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 899999999999997 899999998532 123343 4556777777766543 45789999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||..+|+||+.|||||||||+|.+.|.+.|++.. -|-|+++|||-++.+++ |||+.||++|+|+|.|+-.+++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 38999999999999987 9999999999999999999999
Q ss_pred ccCCCcHHHHHHH
Q 040875 911 AKGPAGAYYSLVS 923 (930)
Q Consensus 911 ~~~~~g~y~~l~~ 923 (930)
.+.+...=.+++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 8633444445554
No 50
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-52 Score=456.77 Aligned_cols=223 Identities=30% Similarity=0.480 Sum_probs=199.3
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCC--CC
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIR--SY 754 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~--~~ 754 (930)
.+.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|+. +.
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4689999999999643 3469999999999999999999999999999999999997 56999999999997 45
Q ss_pred CHHHhhcceEEEccCCCCCcccHHHHhhcCCC-CCCCHHHH-----HHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 755 HLRSLRRHVALVSQEPALFAVTVRENITYGAS-DKIDESEI-----IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 755 ~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~~d~ei-----~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
++.++|++++||||+|++|++|++|||.+++. ...++++. +++++.+++ ++++++.++++|.+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 66789999999999999999999999998752 22445444 445566655 345678889999999999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+|+
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999999889999999999999987 9999999999999999999
Q ss_pred HHhcc
Q 040875 908 SLLAK 912 (930)
Q Consensus 908 eLl~~ 912 (930)
+++.+
T Consensus 310 ~l~~~ 314 (329)
T PRK14257 310 TIFIH 314 (329)
T ss_pred HHhcC
Confidence 99874
No 51
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=459.49 Aligned_cols=232 Identities=30% Similarity=0.457 Sum_probs=194.1
Q ss_pred ccEEEEEEEEEcCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc--CC
Q 040875 683 GHIELQYVHFAYPARP--------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED--IR 752 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~--------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d--i~ 752 (930)
..++++|++.+|..++ ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 4689999999997421 2358999999999999999999999999999999999999999999999977 34
Q ss_pred CCCHHHhhcceEEEccCCCCC---cccHHHHhhcCCC--CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCC
Q 040875 753 SYHLRSLRRHVALVSQEPALF---AVTVRENITYGAS--DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823 (930)
Q Consensus 753 ~~~~~~lR~~i~~V~Q~p~LF---~gTIreNl~~g~~--~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~ 823 (930)
.-+...+|+++.+|+|||+-. ..||+++|.--.. ... -.+.+.+.++.++|.+- .....+.
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCch
Confidence 334667889999999999633 4699999852110 111 12346666777777631 2345788
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
.||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|.++.+ |.|.|+|||++..++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 9999999999999999999999999999999999999999999988764 8999999999999987 999999999999
Q ss_pred EEecChhHHhccCCCcHHHHHHHHh
Q 040875 901 VEEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 901 ve~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
||.|+.+++++ ++...|.+..-..
T Consensus 509 VE~G~~~~v~~-~p~h~Ytr~L~~a 532 (539)
T COG1123 509 VEEGPTEKVFE-NPQHPYTRKLLAA 532 (539)
T ss_pred EEeCCHHHHhc-CCCChHHHHHHHh
Confidence 99999999997 4788888765443
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-51 Score=395.00 Aligned_cols=220 Identities=34% Similarity=0.507 Sum_probs=200.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-----cEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK-----GVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~-----G~I~idG~di~~--~~ 755 (930)
..++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|.|+.+... |+|.+||+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999995 3459999999999999999999999999999999999999875 999999999976 57
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC-C----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD-K----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
.-++|+++|+|+|.|.-|..||.||++||+.- . .-|+-++++|+.+.|||-+. +.|+ +.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK---DrL~----~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK---DRLH----KSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH---HHhh----CCccCCChhHH
Confidence 99999999999999999999999999999641 1 12355788999999998775 3343 56888999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|||||||||.-+|+||+||||||||||-+...|.+.|.++.++-|+++|||.+.-... +|+..++-.|++||+|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999998865 899999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
+.+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 974
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.2e-49 Score=417.51 Aligned_cols=235 Identities=47% Similarity=0.753 Sum_probs=217.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. ..++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+..++|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999643 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|..|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999988643 345667788888899999999999999999888999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 923 (930)
+|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++ +.+.|..+++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~ 235 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA--ENGLYAYLYQ 235 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh--ccChHHHHHh
Confidence 9999999999999999999999999877999999999999998899999999999999999999997 5788888765
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=396.12 Aligned_cols=221 Identities=34% Similarity=0.519 Sum_probs=196.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||+|+++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCCHH----HHHHHHHHhcchh--HHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 765 LVSQEPALF-AVTVRENITYGAS-DKIDES----EIIEAAKAANAHD--FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~-~~~~d~----ei~~al~~~~l~~--~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
||-|..-|| +-||.|||++-|. ...+.+ ++.+.++.++|.+ |.. ..|..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~-----------RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYAD-----------RYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhh-----------cCchhcCcchhhHHHHH
Confidence 999999999 5799999987553 134444 4566777777753 433 35679999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTI-QNCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
|||..+|+|+++|||.+|||+-+...+|+-+.+..+ ++|+|+|||+++.. +-+|||.+|++|+|+++|+|+|++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~- 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN- 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC-
Confidence 999999999999999999999999999999988764 89999999999876 55999999999999999999999985
Q ss_pred CCcHHHH
Q 040875 914 PAGAYYS 920 (930)
Q Consensus 914 ~~g~y~~ 920 (930)
+...|-+
T Consensus 227 Pan~FV~ 233 (309)
T COG1125 227 PANDFVE 233 (309)
T ss_pred ccHHHHH
Confidence 6666643
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.6e-49 Score=419.16 Aligned_cols=241 Identities=31% Similarity=0.505 Sum_probs=222.7
Q ss_pred CCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhh
Q 040875 681 ITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 681 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 760 (930)
..|.|+++|++++|++. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 35789999999999742 24689999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 761 RHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
++++|+||+|.+|.+|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999996542 23567788999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
++|++|||||||++||+++...+.+.+++..+++|+|++||+++.+..||||++|++|++++.|++++++++ .++.|++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 251 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ-EDGVFAS 251 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cchHHHH
Confidence 999999999999999999999999999987779999999999999989999999999999999999999873 6788988
Q ss_pred HHHHh
Q 040875 921 LVSLQ 925 (930)
Q Consensus 921 l~~~~ 925 (930)
++..+
T Consensus 252 ~~~~~ 256 (257)
T cd03288 252 LVRTD 256 (257)
T ss_pred HHhcc
Confidence 87654
No 56
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-48 Score=385.39 Aligned_cols=228 Identities=31% Similarity=0.484 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC-HHHhhc
Q 040875 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-LRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~ 761 (930)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4899999999975421 15899999999999999999999999999999999999999999999998776543 446789
Q ss_pred ceEEEccCCC-CCc--ccHHHHhhcCC-CC--CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPA-LFA--VTVRENITYGA-SD--KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~-LF~--gTIreNl~~g~-~~--~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
.+.+|+|||. =++ -||++-|.=.. ++ ....++++++|+.+||.+-... ..+..|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 9999999995 222 35555552110 01 1234568999999998765432 4678999999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
||||.-+|++||||||||+||...++.|.+.+.+..+ +-|.|+|||+++.+.+ ||||+||++|++||.++-++++..
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998876 5599999999999987 999999999999999999999974
Q ss_pred CCCcHHHHHH
Q 040875 913 GPAGAYYSLV 922 (930)
Q Consensus 913 ~~~g~y~~l~ 922 (930)
+...|.+..
T Consensus 233 -~~h~ytr~L 241 (252)
T COG1124 233 -PSHPYTREL 241 (252)
T ss_pred -CccHHHHHH
Confidence 566676543
No 57
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.7e-48 Score=397.46 Aligned_cols=214 Identities=35% Similarity=0.507 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++|+|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||+|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-CCCcccHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 764 ALVSQEP-ALFAVTVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 764 ~~V~Q~p-~LF~gTIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+||||+| .-|.-||+|=+.+|... +.|++.+.+|++.+++.++.++ .=..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 57788999999998531 1233457889999999988653 2347999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTI-QNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
.|||||+++|+||+||||||+||..++..|++.+++.. +|+|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999886 489999999999886 569999999999999999999998
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 5
No 58
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-48 Score=398.80 Aligned_cols=215 Identities=34% Similarity=0.603 Sum_probs=197.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC-CCCHHHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR-SYHLRSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 762 (930)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58999999999765 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred eEEEccCC--CCCcccHHHHhhcCCCC-CCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEP--ALFAVTVRENITYGASD-KIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++|+|+| ++|..||.|+++||+.+ ..+.+ ++.++++.+++.++.+ ..+.+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 89999999999999853 23443 4678888999887633 4578999999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|.+|..+|++||||||||+||++..+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+|+++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999999864 5799999999999987 99999999999999999999997
No 59
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-47 Score=405.32 Aligned_cols=233 Identities=58% Similarity=0.891 Sum_probs=214.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|+++ ..++++|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|..|++||+.++.. ..+.+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988754 345667778888899999999999999999988999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 921 (930)
++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.. ..+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA--QGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH--cCcchhhh
Confidence 9999999999999999999999999878999999999999998899999999999999999999987 55666543
No 60
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-47 Score=404.61 Aligned_cols=235 Identities=54% Similarity=0.807 Sum_probs=217.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999632 35899999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|++|++||+.++.. ..++++++++++.+++.+.+..+|.|+++.+...+.+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988654 456677888899999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 924 (930)
+|||||||++||+++.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++.. ..+.|..++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~--~~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA--KGGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh--cccHHHHHHhc
Confidence 9999999999999999999999998766899999999999998899999999999999999999987 56777776654
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.9e-47 Score=405.10 Aligned_cols=236 Identities=61% Similarity=0.961 Sum_probs=215.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++..+.++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|..|++||+.++.. ....+++++.++..++.+++..+|.|+++.....+.+||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999988643 345667788888889999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 923 (930)
+|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.. ..+.+++++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~--~~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA--QKGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh--cChhHHHHhh
Confidence 9999999999999999999999998777899999999999998899999999999999999999986 4566666553
No 62
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=5.2e-48 Score=403.35 Aligned_cols=227 Identities=32% Similarity=0.534 Sum_probs=191.5
Q ss_pred CccEEEEEEEEEcCCCCC--------ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC
Q 040875 682 TGHIELQYVHFAYPARPD--------VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~--------~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~ 753 (930)
+..++.+||...||-++. ..+.+|+||++++||++||||+||||||||-.+|+|+.+++ |+|..+|.||..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 346899999999974321 24789999999999999999999999999999999999876 999999999998
Q ss_pred CCHHH---hhcceEEEccCCC--CC-cccHHHHhhcCCC--C-CCC----HHHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 754 YHLRS---LRRHVALVSQEPA--LF-AVTVRENITYGAS--D-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 754 ~~~~~---lR~~i~~V~Q~p~--LF-~gTIreNl~~g~~--~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
++.++ +|+++.+|+|||+ |= .-||-+=|.=|.. + ..+ |+++.+|++.+||+.-.. ..
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hc
Confidence 88665 5899999999996 21 2355555532211 0 122 456788899988865433 35
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ 897 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~ 897 (930)
.+..||||||||||||||++-+|++++|||||||||...+.+|.+.++++. .+-+-++|+|+|..++. ||+|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 688999999999999999999999999999999999999999999999875 48899999999999986 999999999
Q ss_pred CEEEEecChhHHhccCCCcHHHH
Q 040875 898 GRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 898 G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
|+|||+|+-++++++ +...|.+
T Consensus 503 GkiVE~G~~~~if~~-P~~~YT~ 524 (534)
T COG4172 503 GKIVEQGPTEAVFAN-PQHEYTR 524 (534)
T ss_pred CEEeeeCCHHHHhcC-CCcHHHH
Confidence 999999999999984 7888865
No 63
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-47 Score=400.03 Aligned_cols=221 Identities=34% Similarity=0.559 Sum_probs=207.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 3469999999999999999999999999999999999999999999999999999898899999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++|+||+|.+|++|++||+.+.. ..+++++.++++..++.+++..+|.|+++..++.+.+||+|||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997653 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|+++||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999999988778999999999999989999999999999998863
No 64
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.5e-47 Score=420.53 Aligned_cols=227 Identities=30% Similarity=0.484 Sum_probs=195.1
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---hh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---LR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 760 (930)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
++|+||||++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.+ ..+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999995 799999987531 1122 245677888888876544 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+.+|++|+||||||+||+++...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 8999999999999976 99999999999999999999987
Q ss_pred cCCCcH-HHHHHH
Q 040875 912 KGPAGA-YYSLVS 923 (930)
Q Consensus 912 ~~~~g~-y~~l~~ 923 (930)
+ ++.. ...++.
T Consensus 231 ~-p~~~~~~~~~~ 242 (343)
T TIGR02314 231 H-PKTPLAQKFIR 242 (343)
T ss_pred C-CCcHHHHHHHh
Confidence 4 4433 344443
No 65
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-47 Score=400.01 Aligned_cols=226 Identities=50% Similarity=0.829 Sum_probs=211.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++|++++|++ ..++++|+||++++||+++|+||||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999963 2358999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++|+||+|.+|.+|++||+.+..+ ...++++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999988654 3456778889999999999999999999999988999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999998877899999999999998899999999999999999999876
No 66
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=409.08 Aligned_cols=219 Identities=24% Similarity=0.434 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC------
Q 040875 683 GHIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY------ 754 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~------ 754 (930)
..|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHhhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCHHHH----HHHHHHhcchhHHhcCccccccc
Q 040875 755 ----------HLRSLRRHVALVSQEP--ALFAVTVRENITYGASD-KIDESEI----IEAAKAANAHDFIAGLSEGYDTW 817 (930)
Q Consensus 755 ----------~~~~lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d~ei----~~al~~~~l~~~i~~Lp~gldt~ 817 (930)
+...+|++++||||+| .+|.+|++||+.+++.. ..++++. .++++.+++. +..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------DSY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------hhH
Confidence 3567899999999999 79999999999887421 2233332 2333333332 123
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEE
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVL 895 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl 895 (930)
..+.+.+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||||++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 456788999999999999999999999999999999999999999999998764 5899999999999885 59999999
Q ss_pred eCCEEEEecChhHHhc
Q 040875 896 EQGRVVEEGSHESLLA 911 (930)
Q Consensus 896 ~~G~ive~G~~~eLl~ 911 (930)
++|++++.|+|+++++
T Consensus 250 ~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 250 DKGKILKTGTPYEIFT 265 (320)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999998764
No 67
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-47 Score=403.37 Aligned_cols=219 Identities=33% Similarity=0.540 Sum_probs=196.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+.+|++. . +|+|+||+|+.||.++|+|||||||||++++++||.+|++|+|+|||.|++++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2 899999999999999999999999999999999999999999999999999999887 789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC-----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD-----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~-----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++|+|++-||.- ||+|||.|+... +.-++++.++++..++.+..+. .+.+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-----------~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-----------KPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-----------CcccCChhhHHHHHHHH
Confidence 999999999965 999999998641 1235678889999999888775 45689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++++||||.|+||++....+...|+++.+ +.|+|.|||+....+. +|||+||++|+|.+.|+|.|+..+ +
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~-P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER-P 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC-c
Confidence 99999999999999999999999999888888654 7899999999988765 999999999999999999999974 6
Q ss_pred CcHHH
Q 040875 915 AGAYY 919 (930)
Q Consensus 915 ~g~y~ 919 (930)
...|-
T Consensus 226 ~n~fV 230 (338)
T COG3839 226 ANLFV 230 (338)
T ss_pred cchhh
Confidence 66553
No 68
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-45 Score=413.60 Aligned_cols=318 Identities=29% Similarity=0.465 Sum_probs=296.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHH
Q 040875 4 YLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNV 83 (930)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~ 83 (930)
++.++.-++.+++..|+.++++|+..|+|..+++++++||+++||. + .+|+++++++.|++.+-+.+...+...+.++
T Consensus 196 ~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~ 273 (716)
T KOG0058|consen 196 GLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-N-KTGELISRLTSDTQIVSNSVSQNLSDGLRNL 273 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-C-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555677888899999999999999999999999999999996 4 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHH
Q 040875 84 AIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEF 163 (930)
Q Consensus 84 ~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~ 163 (930)
...+++++..|+++|+++++.+.++|+++.+..+++++.++..++.++...++.++++|++++||||++|+.|+.+.+||
T Consensus 274 ~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 274 VQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040875 164 SSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISE 242 (930)
Q Consensus 164 ~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~ 242 (930)
.+..++..+..+|.+...++..+ ..++.......+.|||.+++..+.+|+|+..+.+..-.....++..+...+..+++
T Consensus 354 ~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmk 433 (716)
T KOG0058|consen 354 NKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMK 433 (716)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888 77888888888999999999999999999998888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccc
Q 040875 243 AASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVV 322 (930)
Q Consensus 243 a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll 322 (930)
+..|.+|+++++|++|.++.... ..|...+|.|+|+||+|+||+||+.++|+|+||+|+|||.||+||||||||||++
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~--~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia 511 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGT--LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA 511 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCc--cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH
Confidence 99999999999999998876622 2344667899999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 040875 323 SAS 325 (930)
Q Consensus 323 ~~l 325 (930)
++|
T Consensus 512 sLL 514 (716)
T KOG0058|consen 512 SLL 514 (716)
T ss_pred HHH
Confidence 998
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-46 Score=353.68 Aligned_cols=209 Identities=34% Similarity=0.530 Sum_probs=188.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|.+++|.|+|...+ =..+++|++||+|||+||||||||||++++.||..|.+|+|+|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 57889999996432 468899999999999999999999999999999999999999999999877765 46799
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGASD-----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~~-----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+++||..||. -||++|+.+|... ..+.+.+..++.++|+.++...||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 6999999988642 2345678899999999999998875 899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+|+.+||+||||.||||+.-...+...+.+.+ ++.|+++|||.++-++. +|+++++++|||++.|+-++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999999999888888887776 48899999999999875 99999999999999999999997
No 70
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.4e-46 Score=389.92 Aligned_cols=220 Identities=41% Similarity=0.707 Sum_probs=202.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
|.|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2468999999999999999999999999999999999999999999999999988888788899
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++|+||+|.+|..|++||+.++.. ..+++++.++++..++.+..+..|.|++|.+.+...+||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999987643 3456678889999999999999999999999988999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEec
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 904 (930)
|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999887678999999999988779999999999998765
No 71
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-46 Score=369.18 Aligned_cols=227 Identities=35% Similarity=0.504 Sum_probs=194.9
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSL 759 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~l 759 (930)
..|++++|+++|.+ ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++- ..+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999964 469999999999999999999999999999999999999999999999999999885 456
Q ss_pred hcceEEEccCCCCCc-ccHHHHhhcCCC--CCCCHHHHHH----HHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 RRHVALVSQEPALFA-VTVRENITYGAS--DKIDESEIIE----AAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~d~ei~~----al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
|+++++++|.--||+ -||+||+.|-.. .+.+++++.+ -|+.+||...+.. -.|..||||.|.|
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~----------~~PsELSGGM~KR 153 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD----------LYPSELSGGMRKR 153 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh----------hCchhhcchHHHH
Confidence 999999999999996 599999987432 1345555554 3555666554221 2477999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
+||||||.-+|+|+++|||||+|||-+...+-+.|+++.+ |.|+++|||+++++.. ||||+++.+|+|+.+|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988764 8999999999999976 899999999999999999999
Q ss_pred hccCCCcHHHHHHH
Q 040875 910 LAKGPAGAYYSLVS 923 (930)
Q Consensus 910 l~~~~~g~y~~l~~ 923 (930)
.+. .+-..+++++
T Consensus 234 ~~s-d~P~v~qf~~ 246 (263)
T COG1127 234 LAS-DDPWVRQFFN 246 (263)
T ss_pred HhC-CCHHHHHHhc
Confidence 983 4544455544
No 72
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-46 Score=393.55 Aligned_cols=213 Identities=36% Similarity=0.534 Sum_probs=185.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 761 (930)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 358999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ceEEEccCCCCCcc-cHHHHhhcCCC--CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 762 HVALVSQEPALFAV-TVRENITYGAS--DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 762 ~i~~V~Q~p~LF~g-TIreNl~~g~~--~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
+++||||+|.+|.+ |++||+.++.. ...+. +++.++++.+++.++.. ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 99999999999986 99999987521 11222 34566677777655432 344689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 8999999999999875 99999999999999999999986
No 73
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=368.10 Aligned_cols=215 Identities=32% Similarity=0.517 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---HHHhh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---LRSLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR 760 (930)
.|+++||+.+||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++..++ ++++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 457999999999999999999999999999999999999999999999999999888 77889
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCC-------------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGAS-------------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~-------------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
+++++|+|+|.|-. -|+-+|+..|.. .+.+..+..++|+++++.|+.- .+-.+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999885 589999986642 1223345678899999987754 3556899
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
|||+||++|||||..+|+|++-|||||+|||.+.+.|++.|++.. .|.|+|+.-|.+++.+. ||||+=|++|+|+-+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999875 58999999999999975 999999999999999
Q ss_pred cChhHHhc
Q 040875 904 GSHESLLA 911 (930)
Q Consensus 904 G~~~eLl~ 911 (930)
|+++||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.9e-46 Score=392.10 Aligned_cols=213 Identities=38% Similarity=0.553 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCCcEEEECCccCCCCC--HH
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY-----DPLKGVVKIDGEDIRSYH--LR 757 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~~~~G~I~idG~di~~~~--~~ 757 (930)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999643 5899999999999999999999999999999999999 999999999999998877 66
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCC-CC-C----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGAS-DK-I----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
.+|++++|+||+|.+|..|++||+.++.. .. . .++++.++++.+++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 78899999999999999999999987521 11 1 23467778888888665543211 5689999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655999999999999865 999999999999999998764
No 75
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=378.89 Aligned_cols=210 Identities=32% Similarity=0.526 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++|+|.++ +||+||||+|++||.+||+||||||||||+++++|+.+|.+|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999643 49999999999999999999999999999999999999999999999998766543 5789
Q ss_pred EEEccCC---CCCcccHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 764 ALVSQEP---ALFAVTVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 764 ~~V~Q~p---~LF~gTIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
|||||.. +-|.-||+|=+.+|... ..+.+++.+||+++++.++.. -++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999955 57899999999987431 124588999999999998764 3333 69999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|+.|||||+++|++|+|||||+++|+.+++.+.+.|+++.+ ||||++|+|+++.+.. +|+|+.|+ +++...|+|++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999875 9999999999999975 99999996 678999999999
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
+.
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 86
No 76
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=8.5e-46 Score=389.25 Aligned_cols=220 Identities=50% Similarity=0.803 Sum_probs=200.4
Q ss_pred CCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh
Q 040875 680 KITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 680 ~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l 759 (930)
...+.++++|++++|+++...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34578999999999975423469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 760 RRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
|++++|+||+|.+|.+|++||+.++.. ..+.+++++..+..+++++++.+|.|+++.+.+.+.+||||||||++|||||
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 899999999999999999999987643 3345566677777888999999999999999999999999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
+++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999988778999999999999988999999999974
No 77
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-43 Score=363.79 Aligned_cols=476 Identities=19% Similarity=0.239 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHH
Q 040875 406 SLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVAL 485 (930)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~ 485 (930)
...+.++..+..+...+.+.....+++++..++|.++.++++..|..-++ .-.+++++.++++|+..+. +-...+..
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHH
Confidence 33444455555556667777788999999999999999999999999997 5789999999999999987 44455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHH
Q 040875 486 LVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQER 565 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 565 (930)
+.+....++++.+...+.++++.++.++.+.+.+...++.....-+.-....+..++..++.+..++|.+..+....-.+
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 88888888889999999999877766655554444443333333233344555667788888888999998876542221
Q ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 566 --ILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGT 643 (930)
Q Consensus 566 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 643 (930)
+.+.+...-+..++...+...........++...+....+++|....... -+......+.+.+.+...|+.++..
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHh
Confidence 11222222112111111111111122334455555556666666544322 2222333455566677788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 040875 644 MTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSG 723 (930)
Q Consensus 644 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sG 723 (930)
.++.+..+..+.+++.++-..+.+.+- +.....+.. ..|+++||.|+|+.. .--+..||++|++||.|-|+|.||
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~--~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADF--PRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccC--CCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCC
Confidence 999999999999999887653322111 111111122 469999999999643 234688999999999999999999
Q ss_pred CcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcc
Q 040875 724 SGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803 (930)
Q Consensus 724 sGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l 803 (930)
|||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||..++ |++...+++.+..-|++..+
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999654 55444788878777777766
Q ss_pred hhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEcc
Q 040875 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAH 881 (930)
Q Consensus 804 ~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaH 881 (930)
..... +.+|== ....||-|||.|+|+--|++.+.||+++||=-+-.||.=.+.+.+.+.-.. +|||++.|||
T Consensus 434 ~~kts-l~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 434 AHKTS-LNDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hhhhc-ccCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 55432 333211 235799999999999999999999999999999999999988877765443 4999999999
Q ss_pred CchhhhccCEEEEEeCCEEEEec
Q 040875 882 RLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 882 rl~ti~~~DrI~vl~~G~ive~G 904 (930)
+-..-..|||++.|++|+++|.-
T Consensus 508 Dd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 508 DDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred CchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999864
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=399.32 Aligned_cols=217 Identities=27% Similarity=0.486 Sum_probs=192.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+||||+| .++..|++|||.++... ..+ +++++++++.+++.++.+. .+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 46778999999886321 122 3457788888888766543 3468999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+++|++|||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||||++|++|++++.|+++++..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999999998753 899999999999998899999999999999999999886
No 79
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=392.32 Aligned_cols=218 Identities=31% Similarity=0.520 Sum_probs=193.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEECCccCCCCCHHHhh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 760 (930)
.|+++|++++|++ .++|+|+||++++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 358999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEccCCCCCcccHHHHhhcCCC-C------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 RHVALVSQEPALFAVTVRENITYGAS-D------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~gTIreNl~~g~~-~------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++|+||+|.+|..|++||+.++.. . ...++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 0 11234567888888887655432 2356789999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+|||||+++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988779999999999998864 99999999999999999999986
No 80
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=389.40 Aligned_cols=224 Identities=34% Similarity=0.532 Sum_probs=194.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+...+..++|+++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3589999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCCCcccHHHHhhcCCCC-CCCHHHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 764 ALVSQEPALFAVTVRENITYGASD-KIDESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 764 ~~V~Q~p~LF~gTIreNl~~g~~~-~~~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+|+||+|.+|..|++||+.++... ...++++.+.++..++. +.. ...+.+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875321 12345667777777763 222 23567899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcHH
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 918 (930)
+|++|||||||++||+++.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|++++++.+ +...|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~ 227 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN-PQNEV 227 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC-CCcHH
Confidence 999999999999999999999999999874 38999999999999875 999999999999999999999863 44455
Q ss_pred HHHH
Q 040875 919 YSLV 922 (930)
Q Consensus 919 ~~l~ 922 (930)
.+.+
T Consensus 228 ~~~~ 231 (241)
T PRK14250 228 TKLF 231 (241)
T ss_pred HHHH
Confidence 5544
No 81
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-46 Score=373.14 Aligned_cols=198 Identities=32% Similarity=0.471 Sum_probs=175.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.+++++|+.+|++ ..||+|+||+|++||.|+|+||||||||||++++.||.+|++|+|.+||.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 5899999999964 5699999999999999999999999999999999999999999999999987433 4579
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCCC-C----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGASDK-I----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~~-~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||+|++.||. -||+||+.++.... . ..+...+.++.+||.+|-+. .+.+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-----------~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-----------YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-----------CccccChHHHHHHHHHH
Confidence 99999999997 79999999986421 1 23467889999999888654 46699999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeC--CEE
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQ--GRV 900 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~--G~i 900 (930)
||+.+|+||+||||.+|||+.|...+|+.+.+..+ ++||++|||+++... -+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999988753 799999999998865 4999999999 555
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-45 Score=371.11 Aligned_cols=208 Identities=35% Similarity=0.494 Sum_probs=176.9
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHh-
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSL- 759 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~l- 759 (930)
++++||+..|.... ...+|+|+||+|++||.|||+||||||||||+++|.++-.|++|+|.++|.|+..++- ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57999999996432 2369999999999999999999999999999999999999999999999999999984 333
Q ss_pred hcceEEEccCCCCCc-ccHHHHhhc----CCCCC-CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 760 RRHVALVSQEPALFA-VTVRENITY----GASDK-IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~-gTIreNl~~----g~~~~-~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
|++||+|+|+..|+. -|++||+.+ ..... ..++...+.++.+++.+.... ..+.+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 578999999998775 699999984 21111 123455666777777654431 34679999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEE
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVE 902 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 902 (930)
||||||+.+|+|++.||||+|||.+|.+.|.+.+++.. .|+|+|+|||+......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999884 3899999999999999999999999999543
No 83
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4e-46 Score=353.19 Aligned_cols=209 Identities=32% Similarity=0.465 Sum_probs=187.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---HHHhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---LRSLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR~ 761 (930)
|+|+||+.+|++. .++|+||||+|++||.+-++|||||||||++++|++...|+.|+|+++|.|++++. ..-||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999864 56999999999999999999999999999999999999999999999999998877 455899
Q ss_pred ceEEEccCCCCC-cccHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALF-AVTVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF-~gTIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+|++|+||--|. +-|+.||++|... ...-.+++.++|+.+||.+....+|. +|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999755 6799999988532 11123567889999999999888764 899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhcc-CEEEEEeCCEEEEecCh
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNC-DMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl~~G~ive~G~~ 906 (930)
|||++.+|++||-||||-+||+++...|++.+.+.. .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999998875 599999999999999875 69999999999987654
No 84
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=405.60 Aligned_cols=217 Identities=34% Similarity=0.531 Sum_probs=188.1
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---hh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---LR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 760 (930)
|+++|++++|+... +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
++++||||+|.+|. .|++||+.++.. ...+ ++++.++++..++.++.. ..+.+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999886 799999987521 1122 235566777777655433 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+++|+||+|||||++||+++.+.+.+.|++..+ |+|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 8999999999999876 99999999999999999999986
Q ss_pred c
Q 040875 912 K 912 (930)
Q Consensus 912 ~ 912 (930)
+
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 3
No 85
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=397.14 Aligned_cols=218 Identities=28% Similarity=0.509 Sum_probs=187.7
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC--HHHhh
Q 040875 685 IELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH--LRSLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--~~~lR 760 (930)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 RHVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 ~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++||||+| .+|..|++||+.++... ..++ +++.++++.+++.+ .+.....+.+||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 68899999999876421 2233 34566777777640 0122345679999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+.+|++|||||||++||+.+...+.+.|++..+ |+|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 899999999999985 59999999999999999999987
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 86
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=396.23 Aligned_cols=220 Identities=35% Similarity=0.558 Sum_probs=196.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||+|+.+++.+ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 4699999999995 45699999999999999999999999999999999999999999999999999998876 478
Q ss_pred eEEEccCCCCC-cccHHHHhhcCCC-C-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALF-AVTVRENITYGAS-D-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF-~gTIreNl~~g~~-~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
|++|+|+.-|| +-||+|||.||.. . ...+ +++.++++.++|.++-. ..+.+|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHH
Confidence 99999999999 5799999999864 1 1232 36789999999988755 3567999999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhcc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
||||..+|++|+||||-||||.+-...++..+++.. .|.|.|+|||+-+... .+|||.||++|+|...|+|+|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988765 3899999999998765 5999999999999999999999974
Q ss_pred CCCcHHH
Q 040875 913 GPAGAYY 919 (930)
Q Consensus 913 ~~~g~y~ 919 (930)
+...|-
T Consensus 228 -P~~~fV 233 (352)
T COG3842 228 -PATRFV 233 (352)
T ss_pred -cchHHH
Confidence 665553
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=403.95 Aligned_cols=220 Identities=30% Similarity=0.506 Sum_probs=192.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ +++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRD 79 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 36999999999963 3589999999999999999999999999999999999999999999999999877653 578
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++||||++.||. .|++||+.|+.. ...+ ++++.++++.+++.++.. ..+.+||||||||+|||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALA 148 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 599999998632 1122 346777888888866543 34568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
|||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||+||++|+|++.|+|++++++
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~- 227 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ- 227 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-
Confidence 999999999999999999999999999999998754 8999999999999855 999999999999999999999974
Q ss_pred CCcHHH
Q 040875 914 PAGAYY 919 (930)
Q Consensus 914 ~~g~y~ 919 (930)
+...|.
T Consensus 228 p~~~~~ 233 (351)
T PRK11432 228 PASRFM 233 (351)
T ss_pred CCchHH
Confidence 555443
No 88
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=405.01 Aligned_cols=220 Identities=30% Similarity=0.483 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++.. ++++
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24589999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||+|.+|. .|++|||.|+... ..+ ++++.++++.+++.++... .+.+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987421 122 2456788888888776654 34589999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++|+||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+|+|++++ +
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~-p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK-P 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC-C
Confidence 99999999999999999999999999999988754 799999999999876 4999999999999999999999974 5
Q ss_pred CcHHH
Q 040875 915 AGAYY 919 (930)
Q Consensus 915 ~g~y~ 919 (930)
...|.
T Consensus 227 ~~~~~ 231 (356)
T PRK11650 227 ASTFV 231 (356)
T ss_pred ccHHH
Confidence 54443
No 89
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.8e-45 Score=405.92 Aligned_cols=208 Identities=31% Similarity=0.483 Sum_probs=183.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh----hcceEEEccCCCCCc-
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL----RRHVALVSQEPALFA- 774 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~V~Q~p~LF~- 774 (930)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||+|+.+.+..++ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEee
Q 040875 775 VTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLD 849 (930)
Q Consensus 775 gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLD 849 (930)
.||+||+.++... ..+ ++++.++++.++|.++.. ..+.+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-----------~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-----------RYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999886421 122 345677888888766544 456689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCCCcHHH
Q 040875 850 EATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGPAGAYY 919 (930)
Q Consensus 850 EaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~ 919 (930)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+. .||||++|++|++++.|+|+|++++ +...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~-p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN-PANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC-cccHHH
Confidence 9999999999999999998874 3899999999999875 5999999999999999999999974 444443
No 90
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=397.42 Aligned_cols=216 Identities=27% Similarity=0.495 Sum_probs=186.8
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----CCHHH
Q 040875 685 IELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS----YHLRS 758 (930)
Q Consensus 685 I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 758 (930)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+..+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHHH
Q 040875 759 LRRHVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 759 lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
+|++++||+|+| .+|..|+.||+.+++.. ..+. +++.++++.+++. ++. ...+.+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 899999999998 79999999999987521 1222 3455667776663 222 245679999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 4899999999999885 599999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
++.
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 975
No 91
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=390.34 Aligned_cols=219 Identities=32% Similarity=0.523 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 358999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS-DK-----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++.. .. ..++++.++++.+++.+.+.. .....+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 123567778888887654432 22356779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
.++
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 863
No 92
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=396.10 Aligned_cols=217 Identities=29% Similarity=0.473 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHH
Q 040875 684 HIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~ 757 (930)
.|+++||+++|++.+ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999996432 23699999999999999999999999999999999999999999999999999653 356
Q ss_pred HhhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCHH----HHHHHHHHhcchhHHhcCccccccc-cCCCCCCCChHH
Q 040875 758 SLRRHVALVSQEP--ALFAVTVRENITYGASD-KIDES----EIIEAAKAANAHDFIAGLSEGYDTW-CGDRGLQLSGGQ 829 (930)
Q Consensus 758 ~lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~-vge~G~~LSgGQ 829 (930)
.+|++++||||+| .+|..|++||+.+++.. ..+.+ ++.++++.+++ ++. ....+.+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF-----------SRDVMSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCCcccCCHHH
Confidence 7899999999998 68999999999886421 12333 33344444444 322 235678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecCh
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~ 906 (930)
|||++|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|||+|||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999874 4899999999999986 5999999999999999999
Q ss_pred hHHhc
Q 040875 907 ESLLA 911 (930)
Q Consensus 907 ~eLl~ 911 (930)
+++++
T Consensus 231 ~~~~~ 235 (286)
T PRK13646 231 KELFK 235 (286)
T ss_pred HHHHh
Confidence 99886
No 93
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-45 Score=388.25 Aligned_cols=226 Identities=31% Similarity=0.482 Sum_probs=193.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|++||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36999999999963 3589999999999999999999999999999999999997 48999999999863 34
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC-C-C----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD-K-I----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~-~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|..|++||+.++... . . .++++.++++.+++.+.+ ++.+++ .+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 56788999999999999999999999875311 1 1 134567778887775433 233444 467899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred HhccCCCcHHH
Q 040875 909 LLAKGPAGAYY 919 (930)
Q Consensus 909 Ll~~~~~g~y~ 919 (930)
+.++ +...|.
T Consensus 236 ~~~~-~~~~~~ 245 (254)
T PRK14273 236 LFFN-PKNTKT 245 (254)
T ss_pred HHhC-CCChHH
Confidence 9863 444443
No 94
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-45 Score=392.80 Aligned_cols=214 Identities=35% Similarity=0.571 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+| .+|..|+++|+.++... ..+ ++++.++++.+++.++.... +..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999999 68899999999886321 122 34567788888887665433 458999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl 910 (930)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998875 4899999999999985 59999999999999999987653
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.6e-45 Score=382.17 Aligned_cols=212 Identities=27% Similarity=0.471 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++||+++|++. ..++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.. .++|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 245999999999999999999999999999999999999999999999999987643 67788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALF-AVTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+| ..|+++|+.+... ...+ +++++++++..++.+.. + ....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------N----KRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------h----ChhhhCCHHHHHHHHHHHH
Confidence 999999988 6899999976421 0111 24566777777775443 2 2345899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988778999999999999875 999999999999999999875
No 96
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-45 Score=375.96 Aligned_cols=203 Identities=35% Similarity=0.581 Sum_probs=183.5
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.++++|++++|+.. ..++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 679999999999742 2368999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++|+||+|.+|++|+++|+.+.. ..+++++.++++ +.+.+.+|||||+||++||||++++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999997643 345555555443 2356789999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999988999999999999998875
No 97
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-45 Score=385.27 Aligned_cols=211 Identities=33% Similarity=0.473 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999964 359999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-CC----C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGASD-KI----D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~~-~~----~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
|+||+|.+|. .|++||+.++... .. + ++++.++++..++.+... ..+.+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHH
Confidence 9999999885 6999999875310 11 1 234566677777655433 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7999999999998765 99999999999999999999986
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7e-45 Score=387.31 Aligned_cols=223 Identities=35% Similarity=0.540 Sum_probs=191.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccCCCC--CHH
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGEDIRSY--HLR 757 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-----~G~I~idG~di~~~--~~~ 757 (930)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999964 34899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCC-CC-CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGAS-DK-ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
.+|++++|+||+|.+|..|++||+.++.. .. .+ ++++.++++.+++.+++.. .....+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 11 11 2456778888888644321 123456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
|++|||||+++|+++||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999998865 9999999999999999999998
Q ss_pred ccCCCcHH
Q 040875 911 AKGPAGAY 918 (930)
Q Consensus 911 ~~~~~g~y 918 (930)
++ +...+
T Consensus 232 ~~-~~~~~ 238 (247)
T TIGR00972 232 TN-PKEKR 238 (247)
T ss_pred hC-CCChH
Confidence 63 44444
No 99
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.5e-45 Score=402.77 Aligned_cols=218 Identities=28% Similarity=0.468 Sum_probs=191.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||+++.+.+.. ++++
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||++.+|. .|++||+.|+... ..+ ++++.++++..++.++.+ ..+.+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHH
Confidence 99999999995 7999999986421 122 345677788877766543 456799999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+|++++ +
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~-p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH-P 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-C
Confidence 99999999999999999999999999999988754 8999999999998865 999999999999999999999974 5
Q ss_pred CcHH
Q 040875 915 AGAY 918 (930)
Q Consensus 915 ~g~y 918 (930)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 5555
No 100
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=388.35 Aligned_cols=219 Identities=32% Similarity=0.523 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 755 (930)
+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||+++.. .+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 57999999999963 358999999999999999999999999999999999986 479999999999863 45
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC--CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD--KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~--~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|..|+++|+.++... ..+ +++++++++.+++.+.+. ....+.+.+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 67789999999999999999999999875310 122 245777888888754332 22345677999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
++.
T Consensus 242 ~~~ 244 (260)
T PRK10744 242 IFT 244 (260)
T ss_pred HHh
Confidence 986
No 101
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=383.02 Aligned_cols=470 Identities=18% Similarity=0.158 Sum_probs=342.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHH------HHHHHHHhhHHHHHHHH
Q 040875 406 SLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSG------AICSRLAKDANVVRSLV 479 (930)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G------~i~~rls~D~~~i~~~~ 479 (930)
+.+|.+++.+.......+.|+......++..-+.+.+.++-+.....|+. +..| ..=+|+..|+..+.+..
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhhH
Confidence 45566666666777777888888888888888888888887766633332 1122 23478999998887766
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 480 GDRVALLVQTLSSITIAFTMSL---------------IISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESS 544 (930)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (930)
......+++.+.+++...++.. .+...+.+++++.++..-+......+.+.+..-+..+......
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 6666677777666555444443 1122223333333333333333344444444444555555555
Q ss_pred HHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHH
Q 040875 545 KLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSL 624 (930)
Q Consensus 545 ~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~ 624 (930)
......-++.+.|..++.|+...++.++..........+.......+..+......+...+-+..+......|.++.|.+
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 66666778889999999998887777666665554444433333333333333344444444455666778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCCCCCC--C---CCCCccEEEEEEEEEcCCC
Q 040875 625 FEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT--KINPEDPKGYR--P---EKITGHIELQYVHFAYPAR 697 (930)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~---~~~~g~I~~~nvsf~Y~~~ 697 (930)
+............++.+...++.+..-.+...|+.++.+... +.+++.+.... . ......|+++|++..-|+.
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 999888888888888888888888888888888877754221 11111111100 0 0014679999999999854
Q ss_pred CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccH
Q 040875 698 PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTV 777 (930)
Q Consensus 698 ~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTI 777 (930)
.+.++++||+++|||.+-|.|+||||||||+++|.|++|--+|+|.+-. -.++-++||.|++=.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccH
Confidence 3688999999999999999999999999999999999999999986541 135899999999999999
Q ss_pred HHHhhcCCCC-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCC
Q 040875 778 RENITYGASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALD 856 (930)
Q Consensus 778 reNl~~g~~~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD 856 (930)
||=|+|.... +.+|+|+.++|.+|+|.++++++.+- +. =..-||+|||||||+||.|+++||+++|||||||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999996543 38999999999999999999987542 22 356899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 040875 857 SQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 857 ~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
+++|..+.+.+++...+.|+|.|+||.......++.+-++
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999998877777766554
No 102
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-45 Score=386.25 Aligned_cols=214 Identities=35% Similarity=0.533 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---HHHhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---LRSLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR~ 761 (930)
++++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 145999999999999999999999999999999999999999999999999998876 566888
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASD-------------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~-------------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+++|+||+|.+|. .|++||+.++... ...++++.++++..++.+.. ...+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999998886 6999999864210 11234566667777665432 245679999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEec
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 904 (930)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3899999999999998 59999999999999999
Q ss_pred ChhHHhc
Q 040875 905 SHESLLA 911 (930)
Q Consensus 905 ~~~eLl~ 911 (930)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999743
No 103
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=389.55 Aligned_cols=220 Identities=30% Similarity=0.471 Sum_probs=191.4
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--C
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--Y 754 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~ 754 (930)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 467999999999963 3589999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-----C-CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 755 HLRSLRRHVALVSQEPALFAVTVRENITYGAS-DK-----I-DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 755 ~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-----~-~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+...+|++++|+||+|.+|.+|++||+.++.. .. . .+++++++++.+++.+.+.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 56678899999999999999999999987531 01 1 13456778888888654421 22345778999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 906 (930)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999999965 899999999999999999
Q ss_pred hHHhc
Q 040875 907 ESLLA 911 (930)
Q Consensus 907 ~eLl~ 911 (930)
++++.
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 99986
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=390.62 Aligned_cols=216 Identities=30% Similarity=0.530 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++++
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+| .++..|++|||.++... ..+ ++++.++++.+++.+++... +..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHH
Confidence 9999999 57788999999875321 122 24567788888887766543 458999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999998763 799999999999998899999999999999999999875
No 105
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=8.6e-45 Score=384.43 Aligned_cols=213 Identities=29% Similarity=0.473 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 763 (930)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 358999999999999999999999999999999999999999999999999988876654 5789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCC-C----------C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 764 ALVSQEPALFAV-TVRENITYGASDK-I----------D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~~-~----------~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+|+||+|.+|.+ |++||+.++.... . . .+++.++++..++ +.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999986 9999998753211 0 1 1233444444444 3333456678999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999998875 68999999999999966 99999999999999999
Q ss_pred hhHHhc
Q 040875 906 HESLLA 911 (930)
Q Consensus 906 ~~eLl~ 911 (930)
++++++
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 999875
No 106
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1e-44 Score=385.57 Aligned_cols=213 Identities=32% Similarity=0.512 Sum_probs=184.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 761 (930)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999961 2358999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASD-------------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~-------------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+++|+||+|.+|. .|++||+.++... ...++++.++++..++.+... ..+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999998886 6999999865311 112345666777777655432 35678999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 37999999999999865 9999999999999999
Q ss_pred ChhHHh
Q 040875 905 SHESLL 910 (930)
Q Consensus 905 ~~~eLl 910 (930)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999974
No 107
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.6e-44 Score=396.68 Aligned_cols=226 Identities=25% Similarity=0.378 Sum_probs=190.8
Q ss_pred cEEEEEEEEEcCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC
Q 040875 684 HIELQYVHFAYPARP----------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~----------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~ 753 (930)
-|+++|++++|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HhhcceEEEccCC--CCC-cccHHHHhhcCCC---CCCCH----HHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 754 YHLR---SLRRHVALVSQEP--ALF-AVTVRENITYGAS---DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 754 ~~~~---~lR~~i~~V~Q~p--~LF-~gTIreNl~~g~~---~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
++.. .+|++++||||+| .|| ..||.+||.++.. ...+. +.+.++++.+++.+. ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------HhcC
Confidence 8754 4678999999999 477 5899999965310 01233 334556666666321 1234
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeC
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQ 897 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~ 897 (930)
.+.+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5779999999999999999999999999999999999999999999988753 8999999999999976 999999999
Q ss_pred CEEEEecChhHHhccCCCcHHHH
Q 040875 898 GRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 898 G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
|+|+|.|++++++++ +...|.+
T Consensus 238 G~ive~g~~~~i~~~-~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHN-PLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcC-CCCHHHH
Confidence 999999999999974 5566655
No 108
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=391.84 Aligned_cols=215 Identities=30% Similarity=0.521 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~ 761 (930)
.|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+..++|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999962 245999999999999999999999999999999999999999999999999984 345677899
Q ss_pred ceEEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 762 HVALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 762 ~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
+++|+||+| .+|+.|++||+.++... ..+ ++++.++++.+++.++.+ ..+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 67899999999875321 122 244667778877765432 457799999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+.+|+||||||||++||+++.+.+.+.|++..+ |+|||++||+++.+. .||||++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 899999999999997 599999999999999999999886
No 109
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=393.61 Aligned_cols=217 Identities=30% Similarity=0.498 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----CCHHH
Q 040875 685 IELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS----YHLRS 758 (930)
Q Consensus 685 I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 758 (930)
|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 79999999996421 1459999999999999999999999999999999999999999999999999863 34667
Q ss_pred hhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 759 LRRHVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 759 lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+|++++||||+| .+|..|++||+.++... ..+. +++.++++.+++++.+. ...+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999998 68899999999886421 1233 24556677777642211 2456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ |.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 8999999999999864 99999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+++
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 875
No 110
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=400.05 Aligned_cols=218 Identities=31% Similarity=0.497 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.|+.+.+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999964 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC-----CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGASD-----KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~-----~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+||||++.+|. .|++||+.++... ..+ ++++.++++.+++.++.+ ..+.+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 99999999997 5999999986321 112 245667788887765543 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+++|++|+||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999999865 9999999999999999999999
Q ss_pred ccCCCcHH
Q 040875 911 AKGPAGAY 918 (930)
Q Consensus 911 ~~~~~g~y 918 (930)
.+ +...|
T Consensus 226 ~~-p~~~~ 232 (353)
T PRK10851 226 RE-PATRF 232 (353)
T ss_pred hC-ccchH
Confidence 74 54444
No 111
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.2e-45 Score=379.45 Aligned_cols=204 Identities=30% Similarity=0.487 Sum_probs=177.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 761 (930)
|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++|+||+|.+|. .|++||+.++.. ....++++.++++.+++.++... ...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999886 599999986421 01134567888888888765543 345899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 48999999999999975 999999999975
No 112
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=383.72 Aligned_cols=217 Identities=33% Similarity=0.509 Sum_probs=186.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 35899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.+- ......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999885 799999976421 1112 2345666777666430 01234567899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999999875 38999999999998764 999999999999999999999863
No 113
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=389.22 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=191.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+| .++..|+.|||.++... ..++ +++.++++.+++.++... .+..||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 47789999999875321 2233 335667777787665432 4568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+++|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999988753 899999999999998899999999999999999999986
No 114
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-44 Score=402.64 Aligned_cols=214 Identities=29% Similarity=0.514 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++..++|+++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHhhcCCC---------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 764 ALVSQEPAL-FAVTVRENITYGAS---------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g~~---------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+||||+|.+ |..|++||+.++.. ...++++++++++.+++.++.+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999986 78899999987642 01234568889999999776532 3568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+|||||+++|+||+|||||++||+.+...+.+.|+++. +++|+|+++|+++.+. .||||++|++|++++.|+|+|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 4899999999999995 599999999999999999999985
No 115
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-44 Score=389.89 Aligned_cols=220 Identities=33% Similarity=0.493 Sum_probs=186.8
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh----hc
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL----RR 761 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~ 761 (930)
.++|++.+|.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777743 358999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ceEEEccCCCCC-cccHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALF-AVTVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF-~gTIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++|+||+|.+| ..|++||+.++.. ....++++.++++.+++.++.... +.+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY-----------PDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------cccCCHHHHHHHHH
Confidence 899999999988 4699999986421 011234567788888887665543 34899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
||||+++|+||||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++|++++
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 37999999999998865 999999999999999999999863
Q ss_pred CCCcHHHH
Q 040875 913 GPAGAYYS 920 (930)
Q Consensus 913 ~~~g~y~~ 920 (930)
+...|.+
T Consensus 252 -~~~~~~~ 258 (269)
T cd03294 252 -PANDYVR 258 (269)
T ss_pred -cCcHHHH
Confidence 4454543
No 116
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=386.97 Aligned_cols=218 Identities=30% Similarity=0.428 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccCC--CCCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGEDIR--SYHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-----~G~I~idG~di~--~~~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 5899999999964 35899999999999999999999999999999999999874 999999999997 4566
Q ss_pred HHhhcceEEEccCCCCCcc-cHHHHhhcCCC-CC------CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 757 RSLRRHVALVSQEPALFAV-TVRENITYGAS-DK------IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~------~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
.++|++++|+||+|.+|.+ |++||+.++.. .. ..++++.++++..++.+.+.. .....+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788999999999999975 99999986421 01 112456677777777544321 223457799999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999865 9999999999999999999
Q ss_pred HHhc
Q 040875 908 SLLA 911 (930)
Q Consensus 908 eLl~ 911 (930)
++++
T Consensus 234 ~~~~ 237 (253)
T PRK14267 234 KVFE 237 (253)
T ss_pred HHHh
Confidence 9986
No 117
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=393.11 Aligned_cols=217 Identities=24% Similarity=0.452 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC--------
Q 040875 684 HIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS-------- 753 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~-------- 753 (930)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997432 1359999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHhhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcch-hHHhc
Q 040875 754 ----------------YHLRSLRRHVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAH-DFIAG 809 (930)
Q Consensus 754 ----------------~~~~~lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~-~~i~~ 809 (930)
.+...+|++++||||+| .+|..|++|||.+++.. ..+. +++.++++.+++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-- 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL-- 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh--
Confidence 13467889999999987 68999999999987521 1232 3456677777764 332
Q ss_pred CccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-
Q 040875 810 LSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ- 887 (930)
Q Consensus 810 Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~- 887 (930)
...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+.
T Consensus 160 ---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 160 ---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 24577999999999999999999999999999999999999999999998875 4899999999999875
Q ss_pred ccCEEEEEeCCEEEEecChhHHhc
Q 040875 888 NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 888 ~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
.||||++|++|++++.|+++++++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999999886
No 118
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-43 Score=381.00 Aligned_cols=219 Identities=28% Similarity=0.440 Sum_probs=195.8
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhc
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~ 761 (930)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 4579999999952 2489999999999999999999999999999999999999999999998
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+++|+||+|.+|.+|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999987642 34456777888899999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEAL-ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i-~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
+|++|||||||++||+++...+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+ ....|.+
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~--~~~~~~~ 254 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS--LRPDFSS 254 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh--cchHHHH
Confidence 99999999999999999998887754 55556899999999999998899999999999999999999986 3445554
Q ss_pred HH
Q 040875 921 LV 922 (930)
Q Consensus 921 l~ 922 (930)
.+
T Consensus 255 ~~ 256 (282)
T cd03291 255 KL 256 (282)
T ss_pred HH
Confidence 33
No 119
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-45 Score=371.02 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc---cCCCCCHHHhh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE---DIRSYHLRSLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~---di~~~~~~~lR 760 (930)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.+++..+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 3788899988864 45899999999999999999999999999999999999999999999999 88774444 4
Q ss_pred cceEEEccCCCCC-cccHHHHhhcCCC------C-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 761 RHVALVSQEPALF-AVTVRENITYGAS------D-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 761 ~~i~~V~Q~p~LF-~gTIreNl~~g~~------~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
++||+|+|+.-|| +-||++||+||.. + ...+.++.+.|+.++|.++-+ ..+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 6899999999877 6899999999973 1 123456777888888865433 4578999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
+||||||...|++|+||||.++||++-.+.+++.|++... |.|+++|||+.+.+.. ||||+||++|+|.+.|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 8999999999998754 999999999999999999999
Q ss_pred hccCCCcHH
Q 040875 910 LAKGPAGAY 918 (930)
Q Consensus 910 l~~~~~g~y 918 (930)
..+ ++..|
T Consensus 226 ~~~-P~s~f 233 (345)
T COG1118 226 YDH-PASRF 233 (345)
T ss_pred hcC-CCccc
Confidence 974 66554
No 120
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.8e-44 Score=400.86 Aligned_cols=219 Identities=35% Similarity=0.528 Sum_probs=191.9
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..++++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.+ +++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 46999999999963 3589999999999999999999999999999999999999999999999999877654 578
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++||||++.||.. |++|||.|+.. ...+ ++++.++++..++.++.+.. +.+||||||||++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRK-----------PHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHHH
Confidence 9999999999965 99999998642 1122 24567788888887766544 458999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
|||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|+|++++++
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~- 235 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE- 235 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-
Confidence 999999999999999999999999999999998754 899999999999876 4999999999999999999999974
Q ss_pred CCcHH
Q 040875 914 PAGAY 918 (930)
Q Consensus 914 ~~g~y 918 (930)
+...|
T Consensus 236 p~~~~ 240 (375)
T PRK09452 236 PKNLF 240 (375)
T ss_pred cccHH
Confidence 55444
No 121
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=379.89 Aligned_cols=211 Identities=28% Similarity=0.394 Sum_probs=181.4
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---h
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---L 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 759 (930)
.++++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+..+ +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 R-RHVALVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 R-~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
| ++++|+||+|.+|.+ |++||+.+... ... .++++.++++..++.+.. ...+.+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 3 689999999998875 99999976321 011 224566777777665443 23467899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
++||||++.+|+||||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999999899999999999998876
No 122
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=384.43 Aligned_cols=226 Identities=31% Similarity=0.464 Sum_probs=193.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~~~~ 758 (930)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3589999999999999999999999999999999999974 6999999999999888888
Q ss_pred hhcceEEEccCCCCC-cccHHHHhhcCCC-CC------CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 759 LRRHVALVSQEPALF-AVTVRENITYGAS-DK------IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF-~gTIreNl~~g~~-~~------~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
+|++++|+||+|.+| ..|++||+.++.. .. ..+++++++++.+++.+.+. ..++ ..+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHH
Confidence 999999999999754 6899999986521 01 11346778888888765432 1223 34568999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 4999999999999999999999
Q ss_pred hccCCCcHHHH
Q 040875 910 LAKGPAGAYYS 920 (930)
Q Consensus 910 l~~~~~g~y~~ 920 (930)
.++ +...+.+
T Consensus 233 ~~~-~~~~~~~ 242 (250)
T PRK14247 233 FTN-PRHELTE 242 (250)
T ss_pred HcC-CccHHHH
Confidence 863 4444443
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.2e-44 Score=377.77 Aligned_cols=214 Identities=31% Similarity=0.456 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 763 (930)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+..+. |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999963 358999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCCC---HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 764 ALVSQEPALFAV-TVRENITYGASDKID---ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~~~~---d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
+|+||+|.+|.+ |++||+.++...... .+++.++++.. ..+++.+ ...+.+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~~~~----~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLKERR----KQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhhhhh----hCchhhCCHHHHHHHHHHHHH
Confidence 999999999986 999999876421101 12233333333 1122222 345678999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999998875 58999999999998865 99999999999999999998864
No 124
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=380.80 Aligned_cols=216 Identities=36% Similarity=0.530 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hhh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 760 (930)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
++++|+||+|.+|. .|++||+.++.. ... .+++++++++..++.+... ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 89999999999997 699999986421 111 2345677777777765543 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+++|++|||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 3 8999999999999875 99999999999999999999875
No 125
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-44 Score=399.32 Aligned_cols=220 Identities=34% Similarity=0.492 Sum_probs=191.5
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC--cEEEECCccCCCCCHHHh
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK--GVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~--G~I~idG~di~~~~~~~l 759 (930)
+|.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 468999999999963 358999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hcceEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 760 RRHVALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+++++||+|++.+|.. |++||+.|+.. ...+ ++++.++++.++|.++.+. .+.+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHH
Confidence 5789999999999965 99999987642 1123 2356677888887666543 4568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV---GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
+|||||+++|++|+||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+.. ||||++|++|++++.|+|+|+
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988754 7899999999998865 999999999999999999999
Q ss_pred hccCCCcHH
Q 040875 910 LAKGPAGAY 918 (930)
Q Consensus 910 l~~~~~g~y 918 (930)
+++ +...|
T Consensus 227 ~~~-p~~~~ 234 (362)
T TIGR03258 227 YDA-PADGF 234 (362)
T ss_pred HhC-cCcHH
Confidence 974 55444
No 126
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=377.12 Aligned_cols=204 Identities=35% Similarity=0.558 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999964 35899999999999999999999999999999999999999999999999998654 3567899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|. .|++||+.++... ..+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence 9999998885 6999999865311 111 245667777777765543 3346899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|+++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999874 38999999999998865 9999999999999875
No 127
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.7e-44 Score=382.96 Aligned_cols=214 Identities=31% Similarity=0.489 Sum_probs=185.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---------
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH--------- 755 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--------- 755 (930)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35899999999999999999999999999999999999999999999999997653
Q ss_pred ----HHHhhcceEEEccCCCCCc-ccHHHHhhcCCC--CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 756 ----LRSLRRHVALVSQEPALFA-VTVRENITYGAS--DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 756 ----~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
...+|++++|+||+|.+|. .|++||+.++.. ... .++++.++++..++.+... ..+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 2467889999999998885 899999987421 011 2345667777777765543 34568
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999865 9999999999999
Q ss_pred EecChhHHhcc
Q 040875 902 EEGSHESLLAK 912 (930)
Q Consensus 902 e~G~~~eLl~~ 912 (930)
+.|+++++.++
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999863
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-44 Score=374.41 Aligned_cols=204 Identities=28% Similarity=0.505 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||++++| ++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 35899999999999 99999999999999999999999999999999999998877 77899999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.+... ... .++++.++++..++.++.+ ..+.+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999976321 011 1345677888888865532 2346899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988778999999999999965 9999999999999875
No 129
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.5e-44 Score=378.41 Aligned_cols=212 Identities=30% Similarity=0.512 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 35999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEccCCCC-CcccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPAL-FAVTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~L-F~gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+ +..|+++|+.++.. ...+ ++++.+.++..++.+ .....+.+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999987 57899999976421 1122 233445555555433 2345567899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999999999875 4899999999999998899999999999999999999986
No 130
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.8e-44 Score=375.71 Aligned_cols=208 Identities=30% Similarity=0.508 Sum_probs=180.0
Q ss_pred EEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 685 IELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~-~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
|+++||+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 259999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||+|.+|.+ |++||+.+... ... .++++.++++..++.+... ..+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976321 011 2345677788887765543 356689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 48999999999998865 9999999999998865
No 131
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-44 Score=391.99 Aligned_cols=227 Identities=30% Similarity=0.446 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH
Q 040875 684 HIELQYVHFAYPARP-------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 756 (930)
.|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 2368999999999999999999999999999999999999999999999999988874
Q ss_pred ---HHhhcceEEEccCCC--CCc-ccHHHHhhcC------CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 757 ---RSLRRHVALVSQEPA--LFA-VTVRENITYG------ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 757 ---~~lR~~i~~V~Q~p~--LF~-gTIreNl~~g------~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
..+|++++||||+|. |+. -|+.+|+... .......+++.++++.+++.+ ..++ ..+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhc----CCCcc
Confidence 457889999999994 554 4898888531 110112345677788887743 1233 34678
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 8999999999999975 9999999999999
Q ss_pred EecChhHHhccCCCcHHHHH
Q 040875 902 EEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~y~~l 921 (930)
|.|++++++++ +...|.+.
T Consensus 235 e~g~~~~~~~~-p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNN-PRHPYTQA 253 (327)
T ss_pred EECCHHHHhcC-CCCHHHHH
Confidence 99999999974 55666653
No 132
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-44 Score=369.76 Aligned_cols=200 Identities=33% Similarity=0.534 Sum_probs=182.0
Q ss_pred EEEEEEEEEcCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 685 IELQYVHFAYPARPD--VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~--~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
|+++||+++|+++.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++|+||+|.+|++|++||+.++. ..++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++|||||+++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998864 3456678889999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 843 PAVLLLDEATSALDSQSEKLVQE-ALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~-~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
|++++|||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999887766 566553 4799999999999998899999999985
No 133
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-44 Score=375.66 Aligned_cols=210 Identities=29% Similarity=0.455 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999963 3599999999999999999999999999999999999999999999999988763 356788999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |+++|+.+... ... .++++.++++..++.++... ...+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976311 011 23457778888888665432 345899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
++.+|++|||||||++||+++.+.+.+.|++.. + ++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998875 3 7899999999999875 999999999999999998875
No 134
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=383.25 Aligned_cols=225 Identities=31% Similarity=0.504 Sum_probs=190.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCC--C
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSY--H 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.+. +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 3589999999999999999999999999999999999985 799999999998653 3
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
...+|++++|+||+|.+|..|++||+.++.. ...+ ++++.++++.+++.+.+. ..++ ..+.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLK----SPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CChhhCCHHHH
Confidence 4567889999999999999999999987531 1122 234667777777753321 1223 45678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+.+|+||||||||++||+++...+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hccCCCcHH
Q 040875 910 LAKGPAGAY 918 (930)
Q Consensus 910 l~~~~~g~y 918 (930)
+++ +...|
T Consensus 241 ~~~-~~~~~ 248 (258)
T PRK14268 241 FHN-PREKS 248 (258)
T ss_pred hcC-CCCHH
Confidence 863 44444
No 135
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-44 Score=383.87 Aligned_cols=219 Identities=32% Similarity=0.452 Sum_probs=191.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999953 459999999999999999999999999999999999997 479999999999864 34
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC--CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS--DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|+.++|+||+|.+|.+|++||+.++.. ... .++++.++++.+++.+.+. ......+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 6678899999999999999999999987521 111 2345677788888765443 22345678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999865 99999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+++
T Consensus 249 ~~~ 251 (267)
T PRK14237 249 IFT 251 (267)
T ss_pred Hhc
Confidence 986
No 136
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-44 Score=383.59 Aligned_cols=224 Identities=29% Similarity=0.458 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 358999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCC-C-CCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASD-K-IDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~-~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|.+|++||+.++... . .++ +++.++++..++.+.+. ......+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999875321 1 122 23555677777755432 122346678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|+||+|||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hccCCCcHH
Q 040875 910 LAKGPAGAY 918 (930)
Q Consensus 910 l~~~~~g~y 918 (930)
+++ +...|
T Consensus 242 ~~~-~~~~~ 249 (259)
T PRK14274 242 FSN-PDDQR 249 (259)
T ss_pred hhC-CCCHH
Confidence 863 44443
No 137
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=384.20 Aligned_cols=219 Identities=31% Similarity=0.450 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 358999999999999999999999999999999999875 689999999999865 345
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC--CC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS--DK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|.+|++||+.++.. .. ..++.+.++++.+++.+.+. ......+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999986421 01 11344666777777643221 122355779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
+.+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 863
No 138
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=380.78 Aligned_cols=220 Identities=30% Similarity=0.485 Sum_probs=188.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccCCCC--C
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGEDIRSY--H 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~ 755 (930)
+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 67999999999963 359999999999999999999999999999999999986 4 589999999998753 4
Q ss_pred HHHhhcceEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 756 LRSLRRHVALVSQEPALFA-VTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
...+|++++|+||+|.+|. .|++||+.++.. ...+ ++++.++++.+++.+.+.. .....+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5577899999999999887 699999986421 1111 2446677777777554432 122457789999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 9999999999999999999
Q ss_pred HHhcc
Q 040875 908 SLLAK 912 (930)
Q Consensus 908 eLl~~ 912 (930)
++..+
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 99864
No 139
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=382.00 Aligned_cols=220 Identities=34% Similarity=0.472 Sum_probs=189.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 755 (930)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 358999999999999999999999999999999999997 589999999999863 56
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC-CC---CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD-KI---DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~~---~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
..++|++++|+||+|.+|..|++||+.++... .. .++++.++++.+++.+.+ +......+.+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67888999999999999999999999875321 11 234566777777764332 22234556789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeC-----------CE
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQ-----------GR 899 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-----------G~ 899 (930)
|++|||||+++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999999865 999999996 67
Q ss_pred EEEecChhHHhcc
Q 040875 900 VVEEGSHESLLAK 912 (930)
Q Consensus 900 ive~G~~~eLl~~ 912 (930)
++|.|++++++.+
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999863
No 140
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=380.19 Aligned_cols=219 Identities=30% Similarity=0.497 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-----~G~I~idG~di~~~--~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 6899999999963 35999999999999999999999999999999999999987 69999999998653 45
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCC-CC-C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASD-KI-D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~~-~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|+.++|+||+|.+|..|++||+.++... .. . ++.+.++++..++.+.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6789999999999999999999999876320 11 1 234555666666654433 223456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+.+|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988678999999999999876 899999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 863
No 141
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.3e-44 Score=382.09 Aligned_cols=216 Identities=32% Similarity=0.489 Sum_probs=187.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC--------
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY-------- 754 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~-------- 754 (930)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 57999999999963 3589999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHhhcceEEEccCCCCCc-ccHHHHhhcCCC--CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCC
Q 040875 755 -----HLRSLRRHVALVSQEPALFA-VTVRENITYGAS--DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822 (930)
Q Consensus 755 -----~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G 822 (930)
....+|++++|+||+|.+|. .|++||+.++.. ... .++++.++++..++.+... ...+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 13567889999999999997 499999976421 011 2345667777777755431 2456
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
..||||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999999875 48999999999999986 999999999999
Q ss_pred EEecChhHHhc
Q 040875 901 VEEGSHESLLA 911 (930)
Q Consensus 901 ve~G~~~eLl~ 911 (930)
++.|+++++++
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999999986
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=384.98 Aligned_cols=216 Identities=30% Similarity=0.558 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+..++|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 59999999999632 34689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+| .++..|++||+.++... ..+.+ ++.++++..++.++.. ..+.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 46678999999875311 12333 3556677777766544 34569999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 589999999999988899999999999999999999876
No 143
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-44 Score=399.83 Aligned_cols=218 Identities=31% Similarity=0.478 Sum_probs=188.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.. ..+.+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999996 599999988632 1122 245677888888765543 335689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++||||||||+||+++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|++++.+ +
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~-p 225 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999988753 8999999999998865 999999999999999999999873 4
Q ss_pred CcHH
Q 040875 915 AGAY 918 (930)
Q Consensus 915 ~g~y 918 (930)
...|
T Consensus 226 ~~~~ 229 (369)
T PRK11000 226 ANRF 229 (369)
T ss_pred ccHH
Confidence 4444
No 144
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-44 Score=385.16 Aligned_cols=215 Identities=31% Similarity=0.502 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-++++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3589999999999999999999999999999999999999999999999999887888889999
Q ss_pred EEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+| .+|..|+++|+.++... ..++ ++++++++.+++.+.... .+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHH
Confidence 9999998 47889999999865321 1232 346778888888765543 3468999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999999988753 899999999999995 599999999999999999999986
No 145
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=381.84 Aligned_cols=219 Identities=34% Similarity=0.525 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc---cCC--CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF---YDP--LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl---~~~--~~G~I~idG~di~~~--~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999997 454 489999999999764 35
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS-DK-----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++.. .. ..+++++++++.+++.+.+. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999986421 01 12345677777777755443 222356779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
+++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 863
No 146
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=386.70 Aligned_cols=217 Identities=27% Similarity=0.478 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCC---CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC-HHHh
Q 040875 684 HIELQYVHFAYPARP---DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-LRSL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~---~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~l 759 (930)
-|+++|++++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 246999999999999999999999999999999999999999999999999997654 4667
Q ss_pred hcceEEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 RRHVALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 R~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
|++++|+||+| .+|..|+.+|+.++... ..+ +++++++++.+++.++... ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 89999999999 47777999999886421 112 3557788888888776554 346899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999999889999999999999999999998
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 6
No 147
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=383.52 Aligned_cols=223 Identities=29% Similarity=0.492 Sum_probs=190.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCCCC--HH
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRSYH--LR 757 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~~--~~ 757 (930)
=+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 358999999999999999999999999999999999986 46999999999987653 34
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCC-CC------CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGAS-DK------IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~------~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
.+|++++|+||+|.+|.+|++||+.++.. .. ..+++++++++..++.+.+. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 12345677788887755322 223345778999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hccCCCcHH
Q 040875 910 LAKGPAGAY 918 (930)
Q Consensus 910 l~~~~~g~y 918 (930)
+++ +...|
T Consensus 236 ~~~-~~~~~ 243 (251)
T PRK14244 236 FKN-PQSSK 243 (251)
T ss_pred hcC-CCChH
Confidence 873 55544
No 148
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.5e-44 Score=378.95 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC--CHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY--HLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~--~~~~lR~~ 762 (930)
++++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3589999999999999999999999999999999999999999999999999864 34577889
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++|+||+|.+|. .|+++|+.++.. ...+ ++++.++++..++.+.. ...+..||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 999999998885 699999987531 1112 23345566666554433 24457899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||++++|++++|||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999999999999998875 48999999999999965 99999999999999999999986
No 149
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6.6e-44 Score=380.95 Aligned_cols=215 Identities=33% Similarity=0.482 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC--------
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-------- 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-------- 755 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999964 35899999999999999999999999999999999999999999999999987542
Q ss_pred HHHhhcceEEEccCCCCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 756 LRSLRRHVALVSQEPALFA-VTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
...+|++++||||+|.+|. .|++||+.++.. ...+ +++++++++..++.+. ....+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 3567889999999998885 799999976421 1112 2334555666555432 23456799999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 906 (930)
||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998875 48999999999999965 999999999999999999
Q ss_pred hHHhcc
Q 040875 907 ESLLAK 912 (930)
Q Consensus 907 ~eLl~~ 912 (930)
++++++
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 999863
No 150
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-44 Score=380.22 Aligned_cols=225 Identities=33% Similarity=0.522 Sum_probs=191.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 755 (930)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999964 3589999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS-DK-----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|..|+++|+.++.. .. ..++++.++++.+++.+.+. ......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 6678999999999999999999999987531 11 12345666777777654332 12234567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 99999999999999999999
Q ss_pred HhccCCCcHH
Q 040875 909 LLAKGPAGAY 918 (930)
Q Consensus 909 Ll~~~~~g~y 918 (930)
+..+ +...+
T Consensus 232 ~~~~-~~~~~ 240 (250)
T PRK14240 232 LFTN-PKDKR 240 (250)
T ss_pred HHhC-CCChH
Confidence 9863 44443
No 151
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6.1e-44 Score=384.14 Aligned_cols=225 Identities=27% Similarity=0.419 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hhh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 760 (930)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999876643 457
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCCC--CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGAS--DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~~--~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++|+||+|.+|.+ |++||+.++.. ...+. +++.++++.+++.+... ....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 889999999999986 99999976321 11122 34555667666644322 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ |+|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7999999999999876 9999999999999999999998
Q ss_pred ccCCCcHHHHHHH
Q 040875 911 AKGPAGAYYSLVS 923 (930)
Q Consensus 911 ~~~~~g~y~~l~~ 923 (930)
++ ++..+..++.
T Consensus 233 ~~-~~~~~~~~~~ 244 (269)
T PRK11831 233 AN-PDPRVRQFLD 244 (269)
T ss_pred cC-CcHHHHHHHH
Confidence 63 4444555554
No 152
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-44 Score=381.06 Aligned_cols=219 Identities=30% Similarity=0.473 Sum_probs=187.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~~ 756 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.+. +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999963 358999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC--CC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS--DK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++.. .. ..++++.++++.+++.+.+. +.....+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 12345566777777654332 223456778999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998865 999999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
+++
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 863
No 153
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=382.06 Aligned_cols=225 Identities=34% Similarity=0.522 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 359999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC-CCC-----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS-DKI-----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~-----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|+.++|+||+|.+|..|++||+.++.. ... .++++.++++.+++++.. +..+ ...+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNL----DRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHh----ccChhhCCHHHH
Confidence 677889999999999999999999986521 011 123556677777774321 1122 345679999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hccCCCcHHH
Q 040875 910 LAKGPAGAYY 919 (930)
Q Consensus 910 l~~~~~g~y~ 919 (930)
+.+ +...|.
T Consensus 234 ~~~-~~~~~~ 242 (251)
T PRK14251 234 FIA-PKKQIT 242 (251)
T ss_pred HhC-CCCHHH
Confidence 863 443343
No 154
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=380.79 Aligned_cols=227 Identities=30% Similarity=0.478 Sum_probs=192.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC--CC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS--DK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++.. .. ..+++++++++..++.+.+.. .....+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999986421 11 123346677777777654322 23456779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999999
Q ss_pred hccCCCcHHHHH
Q 040875 910 LAKGPAGAYYSL 921 (930)
Q Consensus 910 l~~~~~g~y~~l 921 (930)
.++ +...|.+.
T Consensus 233 ~~~-~~~~~~~~ 243 (250)
T PRK14262 233 VER-PKNKLTEE 243 (250)
T ss_pred HhC-CCChHHHH
Confidence 863 44445543
No 155
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=392.51 Aligned_cols=229 Identities=26% Similarity=0.341 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CCcEEEECCccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~ 758 (930)
-++++|++++|+.+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++| ++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999965322 3589999999999999999999999999999999999984 8999999999999988766
Q ss_pred hh----cceEEEccCCC--CCc-ccHHH----HhhcCC--CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 759 LR----RHVALVSQEPA--LFA-VTVRE----NITYGA--SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 759 lR----~~i~~V~Q~p~--LF~-gTIre----Nl~~g~--~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+| ++++||||+|. ++. -|+.+ |+.... .....++++.++++.+++.+.... ....+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 54 37999999995 332 35554 443211 111123567788888888643211 23567899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive 902 (930)
|||||||++|||||+.+|++||+||||++||..+...+.+.|+++.+ |.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 899999999999996 599999999999999
Q ss_pred ecChhHHhccCCCcHHHHH
Q 040875 903 EGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 903 ~G~~~eLl~~~~~g~y~~l 921 (930)
.|++++++++ +...|.+.
T Consensus 235 ~g~~~~~~~~-p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRA-PRHPYTQA 252 (326)
T ss_pred ECCHHHHhhC-CCChHHHH
Confidence 9999999974 66666643
No 156
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=384.37 Aligned_cols=217 Identities=28% Similarity=0.497 Sum_probs=191.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC---cEEEECCccCCCCCHHHh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK---GVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~---G~I~idG~di~~~~~~~l 759 (930)
+.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++.+.+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999643 2358999999999999999999999999999999999999987 899999999988888888
Q ss_pred hcceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 RRHVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 R~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
|++++|+||+| .++..|++||+.++... ..++ +++.++++.+++.++... .+.+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDS-----------EPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHH
Confidence 99999999999 46789999999876321 2233 346778888888765543 456999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ |+|||++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 89999999999999889999999999999999999987
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
No 157
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.8e-44 Score=370.91 Aligned_cols=204 Identities=28% Similarity=0.442 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+. .++|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 3599999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 765 LVSQEPALF-AVTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~-~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
|+||+|.+| ..|++||+.+... ...+++++.++++..++.+... ..+..||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 5799999976421 1235677888999998876554 23568999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 48999999999999875 9999999999999875
No 158
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.7e-44 Score=377.10 Aligned_cols=213 Identities=25% Similarity=0.419 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 763 (930)
|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 358999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGAS-DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~-~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||+|.+|.+ |++||+.++.. ...+. +++.++++..++.+ .....+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999999987 99999987432 11121 23445555555433 233556799999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|++.+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999998875 48999999999987765 99999999999999999999875
No 159
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-44 Score=383.20 Aligned_cols=216 Identities=30% Similarity=0.468 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 59999999999743 24589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCC--CCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEPA--LFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p~--LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+|. ++..|+++|+.++... ..+ ++++.++++..++.++.+ ..+.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999994 5567899999876321 112 245667777777755432 34668999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999998753 799999999999998899999999999999999999976
No 160
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-44 Score=383.11 Aligned_cols=214 Identities=30% Similarity=0.453 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+|+||++.+|.+ |++||+.++... ...+++++++++.+++.++... ...+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHHH
Confidence 999999876654 999999875310 1123567788888888665443 2458999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 38999999999999864 9999999999999999999987
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
No 161
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=382.45 Aligned_cols=219 Identities=32% Similarity=0.509 Sum_probs=190.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 755 (930)
+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999963 3589999999999999999999999999999999999984 79999999999875 44
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-C----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS-DK-I----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
..++|++++|+||+|.+|.+|++||+.++.. .. . .+++++++++.+++.+.+.. ..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 5678999999999999999999999986521 11 1 12446777777777654432 2345678999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+.+
T Consensus 254 ~~~ 256 (272)
T PRK14236 254 LFT 256 (272)
T ss_pred Hhc
Confidence 986
No 162
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.9e-44 Score=373.12 Aligned_cols=206 Identities=28% Similarity=0.458 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---hh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---LR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 760 (930)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cceEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 -RHVALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 -~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++|+||+|.+|. .|++||+.+... ...+ ++++.++++..++.+... ..+..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 68999999999885 699999976321 0111 234566666666654332 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEE
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVV 901 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 901 (930)
+|||||+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999874 379999999999999889999999999986
No 163
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.5e-44 Score=369.41 Aligned_cols=200 Identities=29% Similarity=0.512 Sum_probs=175.2
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 358999999999999999999999999999999999999999999999998864 467789999
Q ss_pred EccCC--CCCcccHHHHhhcCCCC-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 766 VSQEP--ALFAVTVRENITYGASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 766 V~Q~p--~LF~gTIreNl~~g~~~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
+||+| .+|..|++||+.++... ...++++.++++.+++.++... .+..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhC
Confidence 99998 47889999999875321 1234578889999988766443 3458999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998874 58999999999999975 9999999999985
No 164
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.8e-44 Score=374.71 Aligned_cols=205 Identities=36% Similarity=0.491 Sum_probs=175.4
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH----h
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS----L 759 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~----l 759 (930)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 760 RRHVALVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
|++++|+||+|.+|.+ |++||+.++.. ... .++++.++++..++.+... ..+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 6789999999999986 99999987532 111 1345666777776654433 34568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 8999999999999888999999999974
No 165
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=380.43 Aligned_cols=220 Identities=33% Similarity=0.514 Sum_probs=189.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 755 (930)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 3589999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC-----CCCC-HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS-----DKID-ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-----~~~~-d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|..|++||+.++.. .+.+ ++.+.++++.+++.+.+..+ ....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 5678899999999999999999999986421 0111 23456778888886554322 234577999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe-----CCEEEEe
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE-----QGRVVEE 903 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-----~G~ive~ 903 (930)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988778999999999999975 99999998 5999999
Q ss_pred cChhHHhcc
Q 040875 904 GSHESLLAK 912 (930)
Q Consensus 904 G~~~eLl~~ 912 (930)
|++++++++
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999863
No 166
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-43 Score=376.62 Aligned_cols=214 Identities=25% Similarity=0.399 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+. |+.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 358999999999999999999999999999999999999999999999999988776654 567
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCCC-------------CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASDK-------------IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~~-------------~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
++|+||+|.+|.+ |++||+.++.... ..++++.++++..++.+. ......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHH
Confidence 9999999999987 9999998752100 022345566666655432 23456789999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
||||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 999999999999999999999999999999999999999988778999999999999975 9999999999999999999
Q ss_pred HHhc
Q 040875 908 SLLA 911 (930)
Q Consensus 908 eLl~ 911 (930)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 9875
No 167
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=379.89 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5999999999963 358999999999999999999999999999999999986 379999999999853 456
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCC-CC---CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASD-KI---DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~~---~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
.++|++++|+||+|.+|..|++||+.++... .. .++++.++++.+++.+.+.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 11 23455667788887655432 2245677999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe---------CCEEEE
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE---------QGRVVE 902 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~ive 902 (930)
++|||||+++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||||++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777999999999999865 99999998 899999
Q ss_pred ecChhHHhcc
Q 040875 903 EGSHESLLAK 912 (930)
Q Consensus 903 ~G~~~eLl~~ 912 (930)
.|+++|+.++
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999863
No 168
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=375.09 Aligned_cols=213 Identities=28% Similarity=0.407 Sum_probs=181.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 762 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35899999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCCCCCH----HHHHHHHHHh-cchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASDKIDE----SEIIEAAKAA-NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~~~~d----~ei~~al~~~-~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++|+||++.+|.+ |+++|+.++.. ..+. +++.++++.. ++.+. ....+..||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHH
Confidence 9999999999985 99999987532 1122 2233333333 12211 1235678999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||++++|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++..
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999999998875 4899999999999875 499999999999999999999975
No 169
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-43 Score=381.39 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 358999999999999999999999999999999999997 699999999999853 456
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC-CCCC-----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS-DKID-----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~~-----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++.. ...+ ++++.++++..++.+.+ .......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 1122 12334555555443222 2233456789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
.++
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 863
No 170
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=378.51 Aligned_cols=218 Identities=32% Similarity=0.475 Sum_probs=188.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++| ++|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3589999999999999999999999999999999999985 799999999999653 44
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCC-CC-C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASD-KI-D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~~-~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|++||+.++... .. + +++++++++.+++.+.+.. .....+..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 5778999999999999999999999875311 11 1 2345677888777543322 22346779999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
+.
T Consensus 234 ~~ 235 (251)
T PRK14270 234 FL 235 (251)
T ss_pred hc
Confidence 86
No 171
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=379.90 Aligned_cols=221 Identities=30% Similarity=0.471 Sum_probs=192.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC------C---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS------D---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~------~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
|+||++.+|.+ |++||+.++.. . ...++++.++++.+++.+..+ ..+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998876 99999987521 0 112345677788888765443 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998875 48999999999999865 99999999999999999999875
Q ss_pred CCCcHHHHHH
Q 040875 913 GPAGAYYSLV 922 (930)
Q Consensus 913 ~~~g~y~~l~ 922 (930)
+..+.+.+
T Consensus 228 --~~~~~~~~ 235 (255)
T PRK11231 228 --PGLLRTVF 235 (255)
T ss_pred --HHHHHHHh
Confidence 23444544
No 172
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=381.54 Aligned_cols=214 Identities=30% Similarity=0.521 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC-HHHhhcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-LRSLRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i 763 (930)
++++|++++|++ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 235999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEccCCC--CCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 764 ALVSQEPA--LFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 764 ~~V~Q~p~--LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+|+||+|. ++..|++||+.++... ..+ ++++.++++..++.++.. ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 6788999999876321 122 344666777777765543 34568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999998865 4899999999999998899999999999999999999875
No 173
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-43 Score=389.88 Aligned_cols=229 Identities=23% Similarity=0.393 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCCCHHHh
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~l 759 (930)
.++++|++++|+.+. ...+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246899999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEccCC--CCCc-ccHHHHhhcCC--CCCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 760 R----RHVALVSQEP--ALFA-VTVRENITYGA--SDKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 760 R----~~i~~V~Q~p--~LF~-gTIreNl~~g~--~~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
| ++|+||||+| .++. -|+.+|+.... ....+. +++.++++.+++ |++.+ .++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 3 5899999999 3543 56777764211 011232 234455555554 33322 2456788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 8999999999999975 999999999999999
Q ss_pred cChhHHhccCCCcHHHHH
Q 040875 904 GSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 904 G~~~eLl~~~~~g~y~~l 921 (930)
|++++++++ +...|.+.
T Consensus 244 g~~~~i~~~-p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQ-PSHPYSIG 260 (330)
T ss_pred CCHHHHHhC-CCCHHHHH
Confidence 999999974 66667663
No 174
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=395.19 Aligned_cols=206 Identities=36% Similarity=0.556 Sum_probs=179.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh----hcceEEEccCCCCCc-c
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL----RRHVALVSQEPALFA-V 775 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~V~Q~p~LF~-g 775 (930)
++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999996 5
Q ss_pred cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeec
Q 040875 776 TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850 (930)
Q Consensus 776 TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDE 850 (930)
|++||+.++.. ... .++++.++++.+++.++... .+.+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987531 011 23456778888888766543 345899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcHH
Q 040875 851 ATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 851 aTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 918 (930)
|||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+ +...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~-~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN-PANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC-cccHH
Confidence 999999999999999998874 48999999999999865 999999999999999999999874 44444
No 175
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=381.27 Aligned_cols=220 Identities=31% Similarity=0.494 Sum_probs=189.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 359999999999999999999999999999999999997 689999999999865 34
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
...+|++++|+||+|.+|.+|++||+.++.. ....+++++++++..++.+.+.. .....+.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999999999999986421 01124567788888877543321 123567799999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEE-EEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIA-VLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~-vl~~G~ive~G~~~eL 909 (930)
|++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 99975 5799999999999999
Q ss_pred hcc
Q 040875 910 LAK 912 (930)
Q Consensus 910 l~~ 912 (930)
+++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 863
No 176
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-43 Score=379.26 Aligned_cols=218 Identities=32% Similarity=0.482 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 684 HIELQYVHFAYPAR------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
.|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 134699999999999999999999999999999999999999999999999999887654
Q ss_pred H---hhcceEEEccCCC--CC-cccHHHHhhcCCC-----C-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 758 S---LRRHVALVSQEPA--LF-AVTVRENITYGAS-----D-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 758 ~---lR~~i~~V~Q~p~--LF-~gTIreNl~~g~~-----~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+ +|++++|+||+|. ++ ..|++||+.+... . ...++++.++++..++.+. .....+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3 6788999999983 44 4799999964210 0 1123456667777666321 112456789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
|||||||++|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998753 8999999999999975 99999999999999
Q ss_pred ecChhHHhc
Q 040875 903 EGSHESLLA 911 (930)
Q Consensus 903 ~G~~~eLl~ 911 (930)
.|++++++.
T Consensus 232 ~g~~~~~~~ 240 (265)
T TIGR02769 232 ECDVAQLLS 240 (265)
T ss_pred ECCHHHHcC
Confidence 999999986
No 177
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=383.32 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHH
Q 040875 684 HIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~ 757 (930)
.|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13599999999999999999999999999999999999999999999999998653 346
Q ss_pred HhhcceEEEccCC--CCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHH
Q 040875 758 SLRRHVALVSQEP--ALFAVTVRENITYGAS-DKIDE----SEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 758 ~lR~~i~~V~Q~p--~LF~gTIreNl~~g~~-~~~~d----~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
..|+.++|+||+| .+|..|++||+.++.. ...+. +.+.++++.+++. ++. .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 5888999999986531 11222 2345566666664 222 24567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChh
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~ 907 (930)
|||++|||||+.+|++|||||||++||+++.+.+.+.|++.. +|.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4899999999999986 49999999999999999999
Q ss_pred HHhc
Q 040875 908 SLLA 911 (930)
Q Consensus 908 eLl~ 911 (930)
++++
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
No 178
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.7e-44 Score=370.59 Aligned_cols=204 Identities=32% Similarity=0.552 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3589999999999999999999999999999999999999999999999999766543 56899
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.++.. ..+.+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999885 699999987521 1112 234566777777765543 3456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|+++|++++|||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 38999999999999876 9999999999999876
No 179
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.6e-43 Score=373.12 Aligned_cols=213 Identities=30% Similarity=0.455 Sum_probs=181.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~i 763 (930)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..+ .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 35899999999999999999999999999999999999999999999999998877655 46789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC-CCCHH-HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD-KIDES-EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~-~~~d~-ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+|+||+|.+|.+ |+++|+.++... ..+++ ...++++..+. ++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999875321 11222 22334444331 222223456789999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998753 7999999999999985 9999999999999999999974
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=384.15 Aligned_cols=217 Identities=32% Similarity=0.520 Sum_probs=184.4
Q ss_pred EEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHHH
Q 040875 685 IELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLRS 758 (930)
Q Consensus 685 I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~ 758 (930)
|+++||+++|+++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhcceEEEccCC--CCCcccHHHHhhcCCC-CCCCHHH----HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 759 LRRHVALVSQEP--ALFAVTVRENITYGAS-DKIDESE----IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 759 lR~~i~~V~Q~p--~LF~gTIreNl~~g~~-~~~~d~e----i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+|++++|+||+| .+|..|++||+.++.. ...++++ +.++++..++.+. .....+.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 889999999998 6889999999987531 1123332 3445555555321 113456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 48999999999999865 999999999999999999998
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
++
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 75
No 181
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=377.06 Aligned_cols=228 Identities=28% Similarity=0.446 Sum_probs=193.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 756 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 3589999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCCC-C-----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGASD-K-----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~-----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
.+.|++++|+||+|.+|.+|++||+.++... . ..++++.++++.+++.+.+. +.....+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 6778999999999999999999999876320 1 11234566677766644332 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++||||++.+|+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999965 999999999999999999999
Q ss_pred hccCCCcHHHHHH
Q 040875 910 LAKGPAGAYYSLV 922 (930)
Q Consensus 910 l~~~~~g~y~~l~ 922 (930)
.++ +...+.+.+
T Consensus 236 ~~~-~~~~~~~~~ 247 (253)
T PRK14261 236 FEN-PHEELTENY 247 (253)
T ss_pred HhC-CCcHHHHHH
Confidence 863 444454443
No 182
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.5e-43 Score=386.25 Aligned_cols=214 Identities=30% Similarity=0.491 Sum_probs=184.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+.+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 46999999999963 45999999999999999999999999999999999999999999999999997755 457899
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC-CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS-DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++|+||+|.+|. .|++||+.+... ...++ +++.++++.+++.+ ..++++ .+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHH
Confidence 999999999885 699999985321 11222 23445566655543 345444 47999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|++|+|||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999875 48999999999999975 99999999999999999999975
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.1e-43 Score=358.19 Aligned_cols=178 Identities=32% Similarity=0.633 Sum_probs=166.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|+++ +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 23589999999999999999999999999999999999999999999999988766 667889999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|+.|++||+ +.+||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 45899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEec
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 904 (930)
+|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999889999999999999865
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=384.79 Aligned_cols=219 Identities=29% Similarity=0.476 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----C-C
Q 040875 683 GHIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS----Y-H 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~----~-~ 755 (930)
+.|+++|++++|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 6799999999997532 1358999999999999999999999999999999999999999999999999852 2 4
Q ss_pred HHHhhcceEEEccCC--CCCcccHHHHhhcCCCC-CCCHHH----HHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 756 LRSLRRHVALVSQEP--ALFAVTVRENITYGASD-KIDESE----IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d~e----i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
...+|++++|+||+| .+|..|++||+.++... ..+.++ +.++++..++ |+++ ....+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCHH
Confidence 567888999999998 57888999999875321 122322 3344444444 2221 22456789999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998875 38999999999998864 99999999999999999
Q ss_pred hhHHhc
Q 040875 906 HESLLA 911 (930)
Q Consensus 906 ~~eLl~ 911 (930)
+++++.
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 999875
No 185
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=392.24 Aligned_cols=219 Identities=32% Similarity=0.511 Sum_probs=189.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 46999999999953 358999999999999999999999999999999999999999999999999987664 4778
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++||||++.||.. |++||+.|+.. ...+ ++++.++++..++.++.+ ..+.+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999965 99999998642 1122 245667777777765543 34568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
|||+++|++|+||||||+||..+...+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|++.+
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~- 240 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH- 240 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC-
Confidence 99999999999999999999999999988887764 37999999999998754 999999999999999999999974
Q ss_pred CCcHH
Q 040875 914 PAGAY 918 (930)
Q Consensus 914 ~~g~y 918 (930)
+...|
T Consensus 241 p~~~~ 245 (377)
T PRK11607 241 PTTRY 245 (377)
T ss_pred CccHH
Confidence 55544
No 186
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=380.30 Aligned_cols=213 Identities=29% Similarity=0.467 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~~ 762 (930)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35899999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCC--CCcccHHHHhhcCCC-CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPA--LFAVTVRENITYGAS-DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~--LF~gTIreNl~~g~~-~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++||||+|. +|..|+.+|+.++.. ...++ +++.++++..++.++.. ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 678899999976421 11222 34556777777765432 2456899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||||+.+|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998875 48999999999999965 99999999999999999999875
No 187
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=376.47 Aligned_cols=225 Identities=32% Similarity=0.507 Sum_probs=192.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 756 (930)
.++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 358999999999999999999999999999999999975 389999999999875 346
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|.+|++||+.++.. +..+ ++++.++++.+++.+++..+ ....+.+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678999999999999999999999986521 1112 23466778888887665422 2345778999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|+||+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 899999999999999999999
Q ss_pred hccCCCcHHH
Q 040875 910 LAKGPAGAYY 919 (930)
Q Consensus 910 l~~~~~g~y~ 919 (930)
... +.+.+.
T Consensus 233 ~~~-~~~~~~ 241 (250)
T PRK14266 233 FIN-PKDKRT 241 (250)
T ss_pred HhC-CCChHH
Confidence 863 555443
No 188
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=375.18 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999964 3589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCCC-C----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPAL-FAVTVRENITYGASDK-I----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g~~~~-~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||+|.+ +..|++||+.++.... . .++++.++++..++.+... .....||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999987 6789999998753211 1 2345677788887765433 345689999999999999
Q ss_pred Hhc------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 838 AIL------KNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 838 ALl------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
||+ .+|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999999875 4899999999999987 599999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 875
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.1e-43 Score=378.25 Aligned_cols=231 Identities=25% Similarity=0.382 Sum_probs=192.4
Q ss_pred cEEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 684 HIELQYVHFAYPAR------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
.|+++||+++|++. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HhhcceEEEccCCC--CCc-ccHHHHhhcCCC------CCCCHHHHHHHHHHhcch-hHHhcCccccccccCCCCCCCCh
Q 040875 758 SLRRHVALVSQEPA--LFA-VTVRENITYGAS------DKIDESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~--LF~-gTIreNl~~g~~------~~~~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSg 827 (930)
..+++++|+||+|. ++. -|+.+|+.+... ....+++++++++.+++. +... ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 66788999999995 443 388888864211 011234677888888883 3221 23468999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 38999999999999986 9999999999999999
Q ss_pred ChhHHhccCCCcHHHHHHHHh
Q 040875 905 SHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 905 ~~~eLl~~~~~g~y~~l~~~~ 925 (930)
+++++.++..+..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 999998743345566777643
No 190
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=374.63 Aligned_cols=213 Identities=28% Similarity=0.459 Sum_probs=181.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC------CCCHHH
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR------SYHLRS 758 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~------~~~~~~ 758 (930)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 35999999999999999999999999999999999999999999999999873 123467
Q ss_pred hhcceEEEccCCCCCcc-cHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 759 LRRHVALVSQEPALFAV-TVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~g-TIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+|++++|+||+|.+|.+ |++||+.++.. ...+ .+++.++++..++.++.. ..+.+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHH
Confidence 78899999999999975 99999974311 0112 233455566666544433 345689999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999965 999999999999999999998
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
.+
T Consensus 229 ~~ 230 (242)
T PRK11124 229 TQ 230 (242)
T ss_pred cC
Confidence 65
No 191
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=374.82 Aligned_cols=204 Identities=29% Similarity=0.417 Sum_probs=180.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++ ..+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCce
Confidence 5999999999963 3589999999999999999999999999999999999999999999999875 3567899
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 764 ALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
+|+||+|.+|. .|++||+.++.. ...++++.++++..++.+... ..+.+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 699999987532 223567788888888865433 34578999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998864 37999999999999865 9999999999999998765
No 192
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.1e-43 Score=390.85 Aligned_cols=209 Identities=30% Similarity=0.478 Sum_probs=179.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc----cCCCCCHHHh---h-cceEEEccCCC
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE----DIRSYHLRSL---R-RHVALVSQEPA 771 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~----di~~~~~~~l---R-~~i~~V~Q~p~ 771 (930)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+.+.+...+ | ++++||||+|.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 6777765544 3 58999999999
Q ss_pred CCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 040875 772 LFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAV 845 (930)
Q Consensus 772 LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~I 845 (930)
+|. .|++||+.++.. ...+ .++..++++.++|.++.+ ..+.+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987631 0112 245677888888866543 24458999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 846 LLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 846 LiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+. .||||++|++|++++.|+++|++.+ +.+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~-p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN-PANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC-cchHHHH
Confidence 999999999999999999999988753 899999999999975 5999999999999999999999963 5555544
No 193
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=378.46 Aligned_cols=215 Identities=28% Similarity=0.442 Sum_probs=190.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++||+++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...++++
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999963 359999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
++|+||+|.+|. .|++||+.++... +..+++++++++..++.++.. ..+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 999999998874 6999999875210 112345778888888866543 3467899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
++||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999998865 999999999999999999998
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=377.66 Aligned_cols=218 Identities=31% Similarity=0.494 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 756 (930)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999964 3589999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHhhcceEEEccCCCCCc-ccHHHHhhcCCC--CC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 757 RSLRRHVALVSQEPALFA-VTVRENITYGAS--DK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~--~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
..+|+.++|+||++.+|. .|++||+.++.. .. ..++++.++++.+++.+.+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999887 599999976421 11 11245566777777754332 12234567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe------CCEEEE
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE------QGRVVE 902 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~------~G~ive 902 (930)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988778999999999999864 99999997 899999
Q ss_pred ecChhHHhc
Q 040875 903 EGSHESLLA 911 (930)
Q Consensus 903 ~G~~~eLl~ 911 (930)
.|++++++.
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14241 234 IDDTEKIFS 242 (258)
T ss_pred cCCHHHHHh
Confidence 999999986
No 195
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=370.37 Aligned_cols=206 Identities=33% Similarity=0.473 Sum_probs=177.4
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996411 1469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGAS-DK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~-~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||+|.+|. .|++||+.++.. .. ..++++.++++..++.+.... ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999887 799999986421 01 123467778888887665443 34589999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEe--CCEEEEecCh
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLE--QGRVVEEGSH 906 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~~ 906 (930)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 38999999999998765 99999999 7999998864
No 196
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=378.16 Aligned_cols=219 Identities=30% Similarity=0.492 Sum_probs=188.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCCC-HH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSYH-LR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~-~~ 757 (930)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 6899999999963 3589999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCC--CCCCHHHH----HHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGAS--DKIDESEI----IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~~~d~ei----~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
.+|++++|+||+|.+|..|+++|+.++.. ...+++++ .++++.+++.+.. ++.....+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 77899999999999999999999987531 11244443 3445555553322 23344567899999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999875 9999999999999999999998
Q ss_pred cc
Q 040875 911 AK 912 (930)
Q Consensus 911 ~~ 912 (930)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 63
No 197
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.7e-43 Score=376.95 Aligned_cols=213 Identities=31% Similarity=0.479 Sum_probs=187.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCC-CCcccHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 765 LVSQEPA-LFAVTVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 765 ~V~Q~p~-LF~gTIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
|+||+|. .+..|++||+.++... ..+++++.++++.+++.+... ..+..||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999995 5678999999875310 012335677888887765433 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||||++.+|+++||||||++||+++...+.+.|++.. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 4789999999999995 599999999999999999999865
No 198
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-43 Score=368.56 Aligned_cols=202 Identities=36% Similarity=0.595 Sum_probs=174.9
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++|++++|++. ..++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2458999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--CCCcccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 766 VSQEP--ALFAVTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 766 V~Q~p--~LF~gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+||+| .++..|++||+.++.. ...+ ++++.++++..++.++.. ..+.+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99998 4678999999987421 0112 234566777777655443 3456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 48999999999999987 99999999985
No 199
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-43 Score=369.11 Aligned_cols=202 Identities=34% Similarity=0.514 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 761 (930)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23589999999999999999999999999999999999999999999999999887643 4688
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++|+||+|.+|. .|++||+.++.. ....+++++++++..++.+..... ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 9999999999885 699999987421 011245678888888887655432 35899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999976 99999999985
No 200
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.9e-43 Score=368.41 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHhhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSLRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 761 (930)
|+++|++++|+++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 358999999999999999999999999999999999999999999999999987754 35788
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++||||+|.+|. .|++||+.++.. ... .++++.++++..++.+.... .+.+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999887 599999987521 011 23456777787777654432 345899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
||||+++|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999976 899999999974
No 201
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.8e-43 Score=366.03 Aligned_cols=210 Identities=31% Similarity=0.444 Sum_probs=187.2
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH----HHhhc
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL----RSLRR 761 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~----~~lR~ 761 (930)
.+.|+.|+|+.+ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999999876542 34577
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
.++|+||+|.+|+.|++||+.+.. ..++++.+++++.+++.+.+..+|.|+++..+..+.+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999998753 245667788999999999999999999999998999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQE--ALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~--~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
+|++|||||||++||+.+...+.+ .++... ++.|+|++||+++.+..||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999888777 444443 3799999999999998899999999884
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=374.19 Aligned_cols=218 Identities=32% Similarity=0.526 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCC-CCCHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIR-SYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~-~~~~~ 757 (930)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999963 3589999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGAS-DKI-D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~-~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
.+|+.++|+||+|.+|..|++||+.++.. ... + ++++.++++.+++.+.+. ......+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999987531 111 1 234556677777654432 2233456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
|++|||||+.+|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999997
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 5
No 203
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-43 Score=379.20 Aligned_cols=214 Identities=32% Similarity=0.538 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC--CCHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS--YHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 762 (930)
|+++||+++|++ ..++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2358999999999999999999999999999999999999999999999999853 334568899
Q ss_pred eEEEccCC--CCCcccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEP--ALFAVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++|+||+| .+|..|++||+.++... ..+ .+++.++++.+++.++.. ..+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999998 57889999999875321 122 234666777777754322 2356899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999875 48999999999999875 99999999999999999999885
No 204
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=380.51 Aligned_cols=227 Identities=30% Similarity=0.476 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCCC--C
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRSY--H 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 358999999999999999999999999999999999864 4999999999998653 3
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC-CCC-C----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS-DKI-D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~~-~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|.+|++||+.++.. ... + ++++.++++.+++.+.+. +.+ ...+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~----~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRL----DKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHh----hCChhhCCHHH
Confidence 3467889999999999999999999987531 011 1 234566777777643322 122 34567899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+.+|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 99999999999999999999
Q ss_pred HhccCCCcHHHH
Q 040875 909 LLAKGPAGAYYS 920 (930)
Q Consensus 909 Ll~~~~~g~y~~ 920 (930)
+.++ +...|.+
T Consensus 268 ~~~~-~~~~~~~ 278 (286)
T PRK14275 268 LFTN-PKDRMTE 278 (286)
T ss_pred HHhC-CCcHHHH
Confidence 9863 4444433
No 205
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=375.78 Aligned_cols=223 Identities=33% Similarity=0.525 Sum_probs=190.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~ 755 (930)
+.|+++|++++|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 47999999999963 25899999999999999999999999999999999999985 8999999999853 35
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCC--C---CCC-HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGAS--D---KID-ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~---~~~-d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|+.++|+||+|.+|..|++||+.++.. + ..+ ++++.++++.+++.+++.. ..+..+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986421 0 111 2446677888887655442 2235677999999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC-----CEEE
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ-----GRVV 901 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~-----G~iv 901 (930)
|||++|||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999875 999999999 9999
Q ss_pred EecChhHHhccCCCc
Q 040875 902 EEGSHESLLAKGPAG 916 (930)
Q Consensus 902 e~G~~~eLl~~~~~g 916 (930)
+.|+++++.++ +..
T Consensus 236 ~~~~~~~~~~~-~~~ 249 (261)
T PRK14258 236 EFGLTKKIFNS-PHD 249 (261)
T ss_pred EeCCHHHHHhC-CCC
Confidence 99999999863 444
No 206
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.2e-43 Score=384.66 Aligned_cols=213 Identities=31% Similarity=0.475 Sum_probs=182.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+. ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 3589999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGAS-DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||+|.+|. .|++||+.+... ...+++ ++.++++.+++.+ .+++ ...+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~----~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADV----RVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcC----chhhCCHHHHHHHHHHH
Confidence 99999999885 699999974211 112332 3344555555533 2333 34579999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999874 48999999999999975 99999999999999999999975
No 207
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.3e-43 Score=369.09 Aligned_cols=199 Identities=29% Similarity=0.501 Sum_probs=171.9
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999963 35899999999999999999999999999999999999999999999998764 57889999
Q ss_pred EccCCCC---CcccHHHHhhcCCCC---------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 766 VSQEPAL---FAVTVRENITYGASD---------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 766 V~Q~p~L---F~gTIreNl~~g~~~---------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+||+|.+ |..|++||+.++... ...+++++++++..++.++... ...+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHH
Confidence 9999976 678999999875321 0123467778888888765432 3568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 68999999999999875 8999999986 66654
No 208
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-43 Score=375.64 Aligned_cols=221 Identities=29% Similarity=0.480 Sum_probs=190.7
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCC----
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIR---- 752 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~---- 752 (930)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 367999999999963 3599999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHhhcceEEEccCCCCCcccHHHHhhcCCC--C----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 753 SYHLRSLRRHVALVSQEPALFAVTVRENITYGAS--D----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 753 ~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
..+...+|++++|+||+|.+|.+|++||+.++.. . ...++++.++++.+++.+.+. +.......+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678899999999999999999999986521 0 112456777888777654332 23345677999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
||||||++|||||+++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999999965 99999999999999999
Q ss_pred hhHHhcc
Q 040875 906 HESLLAK 912 (930)
Q Consensus 906 ~~eLl~~ 912 (930)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9999863
No 209
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.7e-43 Score=368.94 Aligned_cols=209 Identities=28% Similarity=0.400 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---h
Q 040875 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---L 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 759 (930)
.|+++|++++|++... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999964211 35899999999999999999999999999999999999999999999999998877653 2
Q ss_pred -hcceEEEccCCCCCcc-cHHHHhhcCCC--C---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 -RRHVALVSQEPALFAV-TVRENITYGAS--D---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 -R~~i~~V~Q~p~LF~g-TIreNl~~g~~--~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
+++++|+||+|.+|.+ |++||+.++.. . ....+++.++++..++.+.... .+..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3689999999998875 99999976321 0 1123467778888888765543 345899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 903 (930)
++|||||+++|++|||||||++||+++.+.+.+.|++.. + ++|||+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 3 7899999999999888999999999999875
No 210
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.6e-43 Score=370.49 Aligned_cols=211 Identities=32% Similarity=0.466 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999964 359999999999999999999999999999999999999999999999999986653 478899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCC-CC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGASD-KI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~~-~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.++... .. .++++.++++..++.++.. ....+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875321 11 2345667777777765543 2346899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++++|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998654 7999999999999865 99999999999999999999986
No 211
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.2e-43 Score=368.61 Aligned_cols=211 Identities=29% Similarity=0.438 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCCCcccHHHHhhcCC---CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 764 ALVSQEPALFAVTVRENITYGA---SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 764 ~~V~Q~p~LF~gTIreNl~~g~---~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+|+||+|.+|..|++||+.++. ....+++++.++++..++.+ +.....+.+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997632 11112345566777766642 1123456789999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEE-eCCEEEEecChh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVL-EQGRVVEEGSHE 907 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl-~~G~ive~G~~~ 907 (930)
++|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||+|++| +++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 388999999999999889999999 477788889885
No 212
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=371.65 Aligned_cols=211 Identities=37% Similarity=0.528 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++++|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999964 359999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |+++|+.++.. ....++++.++++..++.++... ...+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 01123466777888887766543 346899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999999999999999998753 8999999999999865 99999999999999999999986
No 213
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=375.45 Aligned_cols=219 Identities=30% Similarity=0.444 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCC--CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRS--YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||+++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3589999999999999999999999999999999999864 58999999999864 34
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC-C---CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD-K---IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~---~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
...+|++++|+||+|.+|..|+++|+.++... . ..++++.++++.+++.+.+.. .....+..|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 45678999999999999999999999875311 1 123456677888887654432 223456789999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe---------CCEEE
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE---------QGRVV 901 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~iv 901 (930)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. |||+++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999965 99999997 89999
Q ss_pred EecChhHHhc
Q 040875 902 EEGSHESLLA 911 (930)
Q Consensus 902 e~G~~~eLl~ 911 (930)
+.|++++++.
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 9999999986
No 214
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-43 Score=375.20 Aligned_cols=214 Identities=21% Similarity=0.387 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..++ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 359999999999999999999999999999999999999999999999999988876654 456
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCC--------------CC--C----HHHHHHHHHHhcchhHHhcCccccccccCCC
Q 040875 763 VALVSQEPALFAV-TVRENITYGASD--------------KI--D----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~--------------~~--~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~ 821 (930)
++|+||+|.+|.+ |++||+.++... .. . .+++.++++..++. ......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 9999999999986 999999875210 00 0 11233444444443 333456
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.+ ||+|++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 779999999999999999999999999999999999999999999988743 7999999999999866 9999999999
Q ss_pred EEEEecChhHHhc
Q 040875 899 RVVEEGSHESLLA 911 (930)
Q Consensus 899 ~ive~G~~~eLl~ 911 (930)
++++.|+++++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999999875
No 215
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-43 Score=373.75 Aligned_cols=225 Identities=29% Similarity=0.438 Sum_probs=193.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCC--CH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSY--HL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 756 (930)
.+.+++.+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.|+.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5899999999953 4589999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
..+|++++|+||+|.+|..|++||+.++.. ....++++.++++.+++.+.+.. ...+.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987631 01123567888888888655432 2235677999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe--------CCEEEEe
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE--------QGRVVEE 903 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~--------~G~ive~ 903 (930)
++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999998865 99999996 8999999
Q ss_pred cChhHHhccCCCcHHH
Q 040875 904 GSHESLLAKGPAGAYY 919 (930)
Q Consensus 904 G~~~eLl~~~~~g~y~ 919 (930)
|++++++++ +...+.
T Consensus 238 g~~~~~~~~-~~~~~~ 252 (261)
T PRK14263 238 GPTAQIFQN-PREQLT 252 (261)
T ss_pred CCHHHHHhC-CCcHHH
Confidence 999999863 443343
No 216
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-43 Score=372.05 Aligned_cols=214 Identities=24% Similarity=0.415 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 762 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+ .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 35999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS--DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++|+||+|.+|. .|++||+.+... ...+. +++.+.++..++. .........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHH
Confidence 999999999887 499999986421 01122 2344444444443 22335567899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999998765 48999999999987755 99999999999999999999975
No 217
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-43 Score=385.40 Aligned_cols=229 Identities=23% Similarity=0.321 Sum_probs=190.8
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC----CCCcEEEECCccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD----PLKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~----~~~G~I~idG~di~~~~~~~ 758 (930)
-|+++|++++|+.+. ...+|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++..+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999996421 2458999999999999999999999999999999999986 58999999999999888766
Q ss_pred hh----cceEEEccCCCC--C-cccHHHHhhcCC----C-C----C--CCHHHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 759 LR----RHVALVSQEPAL--F-AVTVRENITYGA----S-D----K--IDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 759 lR----~~i~~V~Q~p~L--F-~gTIreNl~~g~----~-~----~--~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
++ ++|+||||+|.. + .-||.+|+.... . . . ..++++.++++.++|.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 479999999963 3 358999885310 0 0 0 11346778888888864311 1124
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeC
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQ 897 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~ 897 (930)
.+.+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999998753 8999999999999975 999999999
Q ss_pred CEEEEecChhHHhccCCCcHHHHH
Q 040875 898 GRVVEEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 898 G~ive~G~~~eLl~~~~~g~y~~l 921 (930)
|+|+|.|++++++++ +...|.+.
T Consensus 235 G~ive~g~~~~i~~~-p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTT-PHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhC-CCCHHHHH
Confidence 999999999999973 66677653
No 218
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=381.72 Aligned_cols=219 Identities=33% Similarity=0.536 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccCCCC--C
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-----PLKGVVKIDGEDIRSY--H 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~ 755 (930)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+. +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999964 358999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCC------------------CCCHHHHHHHHHHhcchhHHhcCccccccc
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASD------------------KIDESEIIEAAKAANAHDFIAGLSEGYDTW 817 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~------------------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~ 817 (930)
...+|++++|+||+|.+|.+|++||+.++... ...+++++++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 66788999999999999999999999875210 0113456667777766433 3334
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEE-EEE
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMI-AVL 895 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI-~vl 895 (930)
....+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 45678899999999999999999999999999999999999999999999998777999999999999875 9997 578
Q ss_pred eCCEEEEecChhHHhc
Q 040875 896 EQGRVVEEGSHESLLA 911 (930)
Q Consensus 896 ~~G~ive~G~~~eLl~ 911 (930)
++|++++.|+++++++
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999999986
No 219
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-43 Score=364.18 Aligned_cols=202 Identities=33% Similarity=0.485 Sum_probs=176.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCC-----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGASDK-----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~~~-----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.++.... .+++++.++++.+++.+..... +.+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 9999998753211 2345678889988887665543 35899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999966 9999999999998765
No 220
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-43 Score=365.04 Aligned_cols=202 Identities=26% Similarity=0.473 Sum_probs=173.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 358999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.+... ... .++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976421 011 1344566666666654432 3567899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 47999999999999865 9999999999998865
No 221
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=373.91 Aligned_cols=226 Identities=30% Similarity=0.479 Sum_probs=187.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-----KGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~~ 756 (930)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 35999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHhhcceEEEccCCCCCc-ccHHHHhhcCCC-CCC-CHHHHH----HHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 757 RSLRRHVALVSQEPALFA-VTVRENITYGAS-DKI-DESEII----EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~-~d~ei~----~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
..+|++++|+||+|.+|. .|++||+.++.. ... .+++.. +.++..++.+.+ ++.++ ..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHH
Confidence 678899999999999888 499999986421 111 233332 334444443322 23333 3467899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999986 99999999999999999999
Q ss_pred HhccCCCcHHHH
Q 040875 909 LLAKGPAGAYYS 920 (930)
Q Consensus 909 Ll~~~~~g~y~~ 920 (930)
++.+ +...+.+
T Consensus 234 ~~~~-~~~~~~~ 244 (252)
T PRK14272 234 LFTN-PRDERTE 244 (252)
T ss_pred HHhC-cCcHHHH
Confidence 9873 4544433
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-43 Score=373.53 Aligned_cols=223 Identities=32% Similarity=0.501 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccCCC--CCH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD--P---LKGVVKIDGEDIRS--YHL 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 756 (930)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 5899999999963 358999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHhhcceEEEccCCCCCcccHHHHhhcCCC-CC-CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RSLRRHVALVSQEPALFAVTVRENITYGAS-DK-ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~-~~-~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
..+|++++|+||+|.+|..|+++|+.++.. .. .. ++++.++++.+++.+.+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 577889999999999999999999986421 01 11 234566677776653332 223345679999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
||++|||||+++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999965 999999999999999999999
Q ss_pred hccCCCcH
Q 040875 910 LAKGPAGA 917 (930)
Q Consensus 910 l~~~~~g~ 917 (930)
..+ +...
T Consensus 235 ~~~-~~~~ 241 (252)
T PRK14255 235 FLN-PKEK 241 (252)
T ss_pred hcC-CCCh
Confidence 863 4443
No 223
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=366.14 Aligned_cols=209 Identities=31% Similarity=0.502 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++||+++|++. + .|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 6899999999632 2 49999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-C----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-D----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-~----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.++.. . ..+++++.++++.+++.+.+...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 99999986421 1 123456888899998877765443 4899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++++|+++||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998753 8999999999999865 99999999999999999999986
No 224
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.2e-43 Score=380.75 Aligned_cols=212 Identities=23% Similarity=0.421 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|+ +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999995 3459999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.+... ...+ .+++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 0112 34566667776665443 24456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+.+|++|+|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998778999999999998876 99999999999999999999975
No 225
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.1e-43 Score=365.84 Aligned_cols=205 Identities=29% Similarity=0.428 Sum_probs=176.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---hhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---LRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR~ 761 (930)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 235899999999999999999999999999999999999999999999999998876543 688
Q ss_pred ceEEEccCCCC-CcccHHHHhhcCCC-CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPAL-FAVTVRENITYGAS-DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~L-F~gTIreNl~~g~~-~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++|+||+|.+ +..|++||+.++.. ...++ +++.++++..++.+... ..+.+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 99999999986 56899999987521 11222 24556777777765443 3456899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47999999999999976 89999999999863
No 226
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=370.66 Aligned_cols=229 Identities=28% Similarity=0.420 Sum_probs=192.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC------CccCCCCCH
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID------GEDIRSYHL 756 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id------G~di~~~~~ 756 (930)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.|+.+.+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999964 358999999999999999999999999999999999999998666555 577877788
Q ss_pred HHhhcceEEEccCCCCCcc-cHHHHhhcCCC--CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 757 RSLRRHVALVSQEPALFAV-TVRENITYGAS--DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~~--~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
.++|++++|+||+|.+|.+ |+++|+.++.. ...++ +++.++++..++.+++. ......+..||+||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 8889999999999999975 99999986521 11122 23456677777754331 11234577899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
|||++||||++++|++++|||||++||..+.+.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998877899999999999995 599999999999999999999
Q ss_pred HhccCCCcHHHHHH
Q 040875 909 LLAKGPAGAYYSLV 922 (930)
Q Consensus 909 Ll~~~~~g~y~~l~ 922 (930)
+.++ +...|.+.+
T Consensus 239 ~~~~-~~~~~~~~~ 251 (257)
T PRK14246 239 IFTS-PKNELTEKY 251 (257)
T ss_pred HHhC-CCcHHHHHH
Confidence 9863 555565543
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=372.53 Aligned_cols=213 Identities=29% Similarity=0.421 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC--------CcEEEECCccCCCCCH
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL--------KGVVKIDGEDIRSYHL 756 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~--------~G~I~idG~di~~~~~ 756 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.+.+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 35999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHhhcceEEEccCCC-CCcccHHHHhhcCCCCC------C---CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 757 RSLRRHVALVSQEPA-LFAVTVRENITYGASDK------I---DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 757 ~~lR~~i~~V~Q~p~-LF~gTIreNl~~g~~~~------~---~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
..+|+.++|+||+|. +|..|++||+.++.... . +++.++++++..++.+. ......+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 888889999999986 67899999998753100 1 12345667777766543 334567899
Q ss_pred hHHHHHHHHHHHhc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEE
Q 040875 827 GGQKQRIAIARAIL---------KNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAV 894 (930)
Q Consensus 827 gGQrQrlaLARALl---------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~v 894 (930)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 799999999999996 5999999
Q ss_pred EeCCEEEEecChhHHhc
Q 040875 895 LEQGRVVEEGSHESLLA 911 (930)
Q Consensus 895 l~~G~ive~G~~~eLl~ 911 (930)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
No 228
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-42 Score=383.16 Aligned_cols=213 Identities=31% Similarity=0.464 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccCCCCC-cccHHHHhhcCCC-CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALF-AVTVRENITYGAS-DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF-~gTIreNl~~g~~-~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||++.+| ..|++||+.+... ...+.+ ++.++++.+++ ++..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCC----hhhCCHHHHHHHHHHH
Confidence 9999999886 5799999975321 112222 23445555544 3334444 3579999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 48999999999999965 99999999999999999999975
No 229
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-42 Score=366.18 Aligned_cols=210 Identities=31% Similarity=0.472 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH---HHhh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL---RSLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR 760 (930)
|+++||+++|++++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1258999999999999999999999999999999999999999999999999988773 5788
Q ss_pred cceEEEccCC--CCC-cccHHHHhhcCCC--C-CCCHHHH----HHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 761 RHVALVSQEP--ALF-AVTVRENITYGAS--D-KIDESEI----IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 761 ~~i~~V~Q~p--~LF-~gTIreNl~~g~~--~-~~~d~ei----~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
++++|+||+| .++ ..|+++|+.++.. . ...+++. .++++..++.+ ......+.+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 5799999975321 0 1112211 23444444421 123355678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEec
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 904 (930)
||++|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998754 899999999999987 59999999999998865
No 230
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.8e-43 Score=350.10 Aligned_cols=172 Identities=42% Similarity=0.707 Sum_probs=162.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 245899999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|++|+|.+|.+|++||+ ||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
+|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998875 48999999999999988999999999974
No 231
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=386.42 Aligned_cols=210 Identities=31% Similarity=0.450 Sum_probs=185.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHHHhh
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLRSLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR 760 (930)
|++ |++++|++ . . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 2 399999999999999999999999999999999999999999999998753 245678
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
++++|+||++.+|. .|++||+.++.. ..+++++.++++.+++.++.+. .+.+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHH
Confidence 89999999999986 699999998753 3456678888988888665543 4568999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
+++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|++++.+
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998753 7899999999998865 999999999999999999999974
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.8e-42 Score=369.60 Aligned_cols=224 Identities=25% Similarity=0.366 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc-----CCCCCHHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED-----IRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d-----i~~~~~~~ 758 (930)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999999 87776654
Q ss_pred ----hhcceEEEccCCC--CC-cccHHHHhhcCC--CCCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 759 ----LRRHVALVSQEPA--LF-AVTVRENITYGA--SDKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 759 ----lR~~i~~V~Q~p~--LF-~gTIreNl~~g~--~~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+|+.++|+||+|. ++ .-|+.+|+.+.. ....+ ++++.++++..++.+ +.....+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 3567999999994 33 357888885421 00111 223334444444321 2334667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
|||||||++|||||+++|+||||||||++||+++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988653 8899999999999975 99999999999999
Q ss_pred ecChhHHhccCCCcHHHHH
Q 040875 903 EGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 903 ~G~~~eLl~~~~~g~y~~l 921 (930)
.|+++++..+ +...|.+.
T Consensus 233 ~~~~~~~~~~-~~~~~~~~ 250 (258)
T PRK11701 233 SGLTDQVLDD-PQHPYTQL 250 (258)
T ss_pred eCCHHHHhcC-CCCHHHHH
Confidence 9999999863 44455543
No 233
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.9e-41 Score=430.68 Aligned_cols=214 Identities=25% Similarity=0.371 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEECCccCCCCCHHHh
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~l 759 (930)
.++++||+++|+.++ ++++|+|||++++|||++||+||||||||||+++|.|+.+ |++|+|.+||+++. .++
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996332 3469999999999999999999999999999999999998 68899999999985 357
Q ss_pred hcceEEEccCCC-CCcccHHHHhhcCC----CCCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 760 RRHVALVSQEPA-LFAVTVRENITYGA----SDKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 760 R~~i~~V~Q~p~-LF~gTIreNl~~g~----~~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
|++++||||++. ++..|+|||+.+.. +...+++ ++.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999875 66789999998742 1123433 3566777766643 468999998889999999
Q ss_pred HHHHHHHHhccCCC-EEEeeccCCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhh--hccCEEEEEeCC-EEEEecC
Q 040875 831 QRIAIARAILKNPA-VLLLDEATSALDSQSEKLVQEALERL-MVGRTSVVVAHRLSTI--QNCDMIAVLEQG-RVVEEGS 905 (930)
Q Consensus 831 QrlaLARALl~~~~-ILiLDEaTSaLD~~te~~i~~~i~~~-~~~~TvI~IaHrl~ti--~~~DrI~vl~~G-~ive~G~ 905 (930)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999974 569999999997 9999999
Q ss_pred hhH
Q 040875 906 HES 908 (930)
Q Consensus 906 ~~e 908 (930)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 234
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=364.50 Aligned_cols=210 Identities=31% Similarity=0.539 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 27999999999999999999999999999999999999999999999999987654 368999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGASD-KI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~~-~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||++.+|. .|++||+.++... .. .++++.++++.+++.++... ...+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHH
Confidence 9999999885 7999999865311 11 23456777888888766543 346899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++++|++++|||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998653 8999999999999875 99999999999999999999986
No 235
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2e-42 Score=359.80 Aligned_cols=203 Identities=33% Similarity=0.548 Sum_probs=177.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++||+++|+. .++|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ .+|++++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 378999999952 458999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEccCCCCCcc-cHHHHhhcCC-CC----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAV-TVRENITYGA-SD----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~-~~----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|.+ |++||+.++. +. ..+++++.++++..++.+..... +.+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-----------PEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999874 9999997642 11 11345677888888887665543 34899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
++++|+++||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37999999999999865 99999999999999875
No 236
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-42 Score=362.70 Aligned_cols=202 Identities=34% Similarity=0.533 Sum_probs=172.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC--CCHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS--YHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 762 (930)
|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999964 358999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS--DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~--~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++|+||+|.+|. .|++||+.++.. ...+. +++.++++..++.+... ....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 999999999886 699999976521 11222 34555666666644333 3457899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 48999999999999975 999999999975
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.7e-42 Score=368.60 Aligned_cols=228 Identities=27% Similarity=0.386 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CCcEEEECCccCCCCCHHHh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~l 759 (930)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 2589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCC-CCc--ccHHHHhhcC---CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 760 RRHVALVSQEPA-LFA--VTVRENITYG---ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 760 R~~i~~V~Q~p~-LF~--gTIreNl~~g---~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+++++||||+|. .|. .|+.+|+.+. .....++++++++++.+++.+. ++.++..+.+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999995 443 5788886431 0012345678888888887542 1123456779999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. |||+++|++|++++.|++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7999999999999865 9999999999999999999998
Q ss_pred ccCCCc-HHHHHHHHhh
Q 040875 911 AKGPAG-AYYSLVSLQT 926 (930)
Q Consensus 911 ~~~~~g-~y~~l~~~~~ 926 (930)
++ +.. .++.+++.+.
T Consensus 230 ~~-~~~~~~~~~~~~~~ 245 (254)
T PRK10418 230 NA-PKHAVTRSLVSAHL 245 (254)
T ss_pred hC-CCCHHHHHHHHhhh
Confidence 64 444 4445665443
No 238
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=401.23 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=174.5
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------AN 383 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eE
Confidence 36999999999964 35899999999999999999999999999999999999999999999983 57
Q ss_pred eEEEccCCC--CC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 763 VALVSQEPA--LF-AVTVRENITYGASDKIDESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 763 i~~V~Q~p~--LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
++|+||+|. ++ ..|+++|+.+......+++++.++++..++. +.. .....+||||||||++||||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHH
Confidence 999999984 44 3699999964321123456678888888773 322 23466899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
++++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ +.|+++++++
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999999999999876 4699999999999876 9999999999998 7899999886
No 239
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=372.47 Aligned_cols=224 Identities=27% Similarity=0.405 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCC-----C
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSY-----H 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~-----~ 755 (930)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5899999999963 35899999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHhhcceEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHhcchhHHhcCccccccccCCC
Q 040875 756 LRSLRRHVALVSQEPALFA-VTVRENITYGASD-------------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~-------------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~ 821 (930)
...+|++++|+||+|.+|. .|+++|+.++... ...++++.++++..++.+..+ ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 4567889999999999887 5999999875311 112345677777777765443 34
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCC
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQG 898 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G 898 (930)
+.+||||||||++|||||+.+|++|||||||++||.++.+.+.+.|++.. +|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999999875 3899999999999875 59999999999
Q ss_pred EEEEecChhHHhccCCCcHHHHHHHHh
Q 040875 899 RVVEEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 899 ~ive~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
++++.|+++++-+ ....+++...
T Consensus 230 ~i~~~g~~~~~~~----~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQFDN----ERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHhcc----HHHHHHHhhh
Confidence 9999999999622 2445555433
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.3e-42 Score=379.75 Aligned_cols=200 Identities=26% Similarity=0.449 Sum_probs=175.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc-cHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV-TVR 778 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g-TIr 778 (930)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+ ...++|++++|+||+|.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999976 345778899999999999876 999
Q ss_pred HHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC
Q 040875 779 ENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS 853 (930)
Q Consensus 779 eNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS 853 (930)
||+.+... ...+ ++++.++++.+++.+... ....+||||||||++|||||+.+|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986321 0111 345677788877754332 3456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 854 ALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 854 aLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999875 48999999999999975 99999999999999999999975
No 241
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.1e-42 Score=367.95 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEECCccCCCCCHHHh-hc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGEDIRSYHLRSL-RR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~G~I~idG~di~~~~~~~l-R~ 761 (930)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+. +|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 35899999999999999999999999999999999994 7999999999999988887665 45
Q ss_pred ceEEEccCCCCCcc-cHHHHhhcCCCC--------CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCC-CCCh
Q 040875 762 HVALVSQEPALFAV-TVRENITYGASD--------KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL-QLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p~LF~g-TIreNl~~g~~~--------~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~-~LSg 827 (930)
.++|+||+|.+|.+ |+++|+.+.... ..+ ++++.++++..++.+.. .+ .... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LN----RSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cc----cccccCcCH
Confidence 69999999998875 899998653110 011 23455566666653211 12 2222 5999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCEEEEEeCCEEEEec
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN--CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G 904 (930)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47999999999999975 7999999999999999
Q ss_pred ChhHHhc
Q 040875 905 SHESLLA 911 (930)
Q Consensus 905 ~~~eLl~ 911 (930)
+++++-+
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR01978 228 DVELAKE 234 (243)
T ss_pred CHHHhcc
Confidence 9986654
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-42 Score=367.12 Aligned_cols=203 Identities=27% Similarity=0.421 Sum_probs=174.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +++++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3589999999999999999999999999999999999999999999999988642 34699
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||+|.+|. .|++||+.++.. ...+ ++++.++++..++.+... ..+.+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999986421 0112 235667777777755433 3467899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEe--CCEEEEecCh
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLE--QGRVVEEGSH 906 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~~ 906 (930)
|+++|++|||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 48999999999999865 99999998 5999998764
No 243
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.9e-42 Score=367.68 Aligned_cols=226 Identities=28% Similarity=0.422 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCC------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-
Q 040875 684 HIELQYVHFAYPAR------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL- 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~- 756 (930)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48999999999631 03469999999999999999999999999999999999999999999999999988765
Q ss_pred --HHhhcceEEEccCCC--CC-cccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCcccccc-ccCCCCCC
Q 040875 757 --RSLRRHVALVSQEPA--LF-AVTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDT-WCGDRGLQ 824 (930)
Q Consensus 757 --~~lR~~i~~V~Q~p~--LF-~gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt-~vge~G~~ 824 (930)
..+|++++|+||+|. ++ ..|+++|+.+... ...+ ++++.++++..++ ++ .....+..
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~ 151 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL-----------DDSVLDKRPPQ 151 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCC-----------ChhHhhCCCcc
Confidence 356889999999983 43 4799999854210 0111 1234444554443 32 23456778
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999998753 8999999999999975 9999999999999
Q ss_pred EecChhHHhccCCCcHHHHHH
Q 040875 902 EEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~y~~l~ 922 (930)
+.|+++++.. .++.|..-+
T Consensus 232 ~~g~~~~~~~--~~~~~~~~~ 250 (268)
T PRK10419 232 ETQPVGDKLT--FSSPAGRVL 250 (268)
T ss_pred eeCChhhccC--CCCHHHHHH
Confidence 9999999986 566555433
No 244
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-42 Score=358.09 Aligned_cols=229 Identities=28% Similarity=0.461 Sum_probs=186.8
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-C----CCcEEEECCccCCCCCHHH
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-P----LKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-~----~~G~I~idG~di~~~~~~~ 758 (930)
++++|++.+|+... ...+++||||+|++||++||||+|||||||+.++++|+.+ | .+|+|.+||.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999997542 2458999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred h----hcceEEEccCCC-CCc--ccHH----HHhhcCCCC---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 759 L----RRHVALVSQEPA-LFA--VTVR----ENITYGASD---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 759 l----R~~i~~V~Q~p~-LF~--gTIr----eNl~~g~~~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
+ .+.|++|||||. =|+ -||. |-+..-... +...++..+.|+.+++.+-- ..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 4 368999999994 222 1232 333211000 00134567778888776431 122357899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||+.||-||+.+|++||-||||+|||..++++|.+.|+++. .|.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999999886 49999999999999976 9999999999999
Q ss_pred EecChhHHhccCCCcHHHHHH
Q 040875 902 EEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~y~~l~ 922 (930)
|.|+.++++++ +...|.+..
T Consensus 234 E~g~~~~i~~~-P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKN-PKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcC-CCChHHHHH
Confidence 99999999985 777776543
No 245
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=7.2e-42 Score=380.89 Aligned_cols=213 Identities=31% Similarity=0.456 Sum_probs=181.5
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHhhcceE
Q 040875 689 YVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSLRRHVA 764 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~lR~~i~ 764 (930)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999953 23 4 999999999999999999999999999999999999999999999987542 345688999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCCC---CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 765 LVSQEPALFAV-TVRENITYGASDKI---DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~~~~---~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
|+||+|.+|.+ |++||+.++..... .++++.++++..++.+... ..+.+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999988642111 1234667777777755443 345689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcH
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGA 917 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~ 917 (930)
.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+ ++..
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~ 226 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS-PDLP 226 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC-cCcc
Confidence 99999999999999999999999999998753 7999999999999865 999999999999999999999873 4444
Q ss_pred H
Q 040875 918 Y 918 (930)
Q Consensus 918 y 918 (930)
|
T Consensus 227 ~ 227 (354)
T TIGR02142 227 W 227 (354)
T ss_pred c
Confidence 4
No 246
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-41 Score=367.35 Aligned_cols=214 Identities=33% Similarity=0.542 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++.+|+. +..+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|..+- ..+.|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 5789999999962 24699999999999999999999999999999999999999999999999988765 77889999
Q ss_pred EEEccCCCCCc-ccHHHHhhcCC-----CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGA-----SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~-----~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+||+|.++. -|++|||.|.. +....++++.++++..+|.+.- + .....||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------N----KKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------C----cchhhcCHHHHHHHHHHH
Confidence 99999998775 59999998632 1112356788999999987621 1 335689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-G-RTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~-~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +||++.||.++.+.. ||||++|++|+++.+|+++++..
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999875 5 799999999999987 99999999999999999999875
No 247
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.8e-42 Score=359.82 Aligned_cols=206 Identities=28% Similarity=0.399 Sum_probs=170.8
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEECCccCCCCCHHHhh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 760 (930)
+.|+||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3569999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCCCC---CCCHH-----HHHH-HHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGASD---KIDES-----EIIE-AAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~~~---~~~d~-----ei~~-al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
++++|+||+|.+|.+ |++||+.++... ...++ ++.+ .++..++.+ .......+||||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 999999999999987 999999864210 11111 1112 333333322 22345678999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCc-hhh-hccCEEEEEeCCEEEEec
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRL-STI-QNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl-~ti-~~~DrI~vl~~G~ive~G 904 (930)
||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998875 489999999998 455 559999999999999876
No 248
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.3e-41 Score=355.57 Aligned_cols=205 Identities=29% Similarity=0.452 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hhh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 760 (930)
++++|++++|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24689999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCC-C-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGAS-D-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~-~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+.++|+||+|.+|. .|+.||+.++.. . ..+. +++.++++.+++.++... .+.+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 89999999999887 799999986431 1 1222 345666777777655543 3458999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998875 38999999999997777999999999986
No 249
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-41 Score=356.59 Aligned_cols=206 Identities=25% Similarity=0.399 Sum_probs=179.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++||+++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 35899999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
|+||+|.+|. .|++||+.+... ...+++++.++++..++.+..+ ..+.+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 699999975321 1235667888888888876543 23568999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 4899999999999986 499999999999999999875
No 250
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=348.90 Aligned_cols=225 Identities=33% Similarity=0.534 Sum_probs=193.1
Q ss_pred cEEEEEEEEEcCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 040875 684 HIELQYVHFAYPARPD---------------------VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG 742 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~---------------------~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G 742 (930)
.|+++||+.-+..++. ..-++|+||+|+.||+..|.|-||||||||++++.||++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5778888776643321 1247999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHh----hcceEEEccCCCCC-cccHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCcc
Q 040875 743 VVKIDGEDIRSYHLRSL----RRHVALVSQEPALF-AVTVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSE 812 (930)
Q Consensus 743 ~I~idG~di~~~~~~~l----R~~i~~V~Q~p~LF-~gTIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~ 812 (930)
+|++||.|+..++.++| |+++++|+|+.-|| +-||.||..||..- ..+ ++...++++.+||++|-.+.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--
Confidence 99999999999997776 47899999999888 57999999998641 122 24466789999998886644
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhh-hcc
Q 040875 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTI-QNC 889 (930)
Q Consensus 813 gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti-~~~ 889 (930)
+.+||||++||+.|||||..+|+||++|||.|||||--...+|+.+.++.+ .+|+++|||+|+.. +--
T Consensus 162 ---------p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 162 ---------PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ---------cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 558999999999999999999999999999999999999999999877653 89999999999886 458
Q ss_pred CEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 890 DMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 890 DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
|||..|++|+|++.|||+|++.+ |...|-+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~-PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLN-PANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcC-ccHHHHH
Confidence 99999999999999999999974 6655543
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.7e-41 Score=360.24 Aligned_cols=224 Identities=25% Similarity=0.378 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc-----CCCCCHHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED-----IRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d-----i~~~~~~~ 758 (930)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5899999999964 348999999999999999999999999999999999999999999999988 77766543
Q ss_pred ----hhcceEEEccCCC--C-CcccHHHHhhcC-----CCC-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 759 ----LRRHVALVSQEPA--L-FAVTVRENITYG-----ASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 759 ----lR~~i~~V~Q~p~--L-F~gTIreNl~~g-----~~~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+++.++|+||+|. + +..|+.+|+.+. ... ...++++.+.++..++.+ +.....+..|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 3467999999985 2 345888888532 100 011234444444444421 2334567799
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 38999999999999985 99999999999999
Q ss_pred ecChhHHhccCCCcHHHHH
Q 040875 903 EGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 903 ~G~~~eLl~~~~~g~y~~l 921 (930)
.|+++++..+ +...|.++
T Consensus 230 ~~~~~~~~~~-~~~~~~~~ 247 (253)
T TIGR02323 230 SGLTDQVLDD-PQHPYTQL 247 (253)
T ss_pred ECCHHHHhcC-CCCHHHHH
Confidence 9999999863 44555543
No 252
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-41 Score=348.79 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCC-CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEECCccCCCCCHHHh
Q 040875 684 HIELQYVHFAYPAR-PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD---PLKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~-~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~l 759 (930)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 35579999999999999999999999999999999999999 89999999999998765 467
Q ss_pred hcceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 760 RRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|++++|+||++.+|. .|++||+.+... . . ..+....||+|||||++||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~-----~----------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--C-----K----------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--h-----c----------------------cccchhhCCHHHHHHHHHHHH
Confidence 889999999998886 599999965421 0 0 123456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEc-cCchhhh-ccCEEEEEeCCEEEEec
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVA-HRLSTIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~Ia-Hrl~ti~-~~DrI~vl~~G~ive~G 904 (930)
|+++|++|||||||++||+++.+.+.+.|++..+ +.|+|+++ |+++.+. .||+|++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 56766665 5556664 59999999999999865
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=340.69 Aligned_cols=170 Identities=36% Similarity=0.635 Sum_probs=157.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ .++|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999964 25899999999999999999999999999999999999999999999999998766 67789999
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 765 LVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
|+||+|.+|.+ |++||+. ||||||||++|||||+++|
T Consensus 77 ~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EEecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 99999998886 9999983 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEE
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRV 900 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~i 900 (930)
++++|||||++||+.+.+.+.+.|++.. +|.|+|++||+.+.+. .||+|++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999875 4789999999999987 4999999999974
No 254
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.6e-42 Score=401.38 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=170.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEEECCccCCC-CCHHHhh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGEDIRS-YHLRSLR 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~idG~di~~-~~~~~lR 760 (930)
..|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.+||.++.. .+...+|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999963 3489999999999999999999999999999999998876 69999999987642 2345578
Q ss_pred cceEEEccCCCCCc---ccHHHHhhcCCC------CCCC---HHHHHHHHHHhcchh-HHhcCccccccccCCCCCCCCh
Q 040875 761 RHVALVSQEPALFA---VTVRENITYGAS------DKID---ESEIIEAAKAANAHD-FIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~---gTIreNl~~g~~------~~~~---d~ei~~al~~~~l~~-~i~~Lp~gldt~vge~G~~LSg 827 (930)
++++|+||+|.++. .|+++++.++.. .... ++++.++++..++.+ .. ...+.+|||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSg 404 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-----------DAPFHSLSW 404 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-----------cCchhhCCH
Confidence 89999999986642 467777653211 0111 235666777776643 22 234568999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEccCchhhhc--cCEEEEEeCCEEEEe
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-G-RTSVVVAHRLSTIQN--CDMIAVLEQGRVVEE 903 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~-~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~ 903 (930)
|||||++|||||+.+|++|||||||++||+++.+.+.+.|++..+ + .|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999999998753 4 469999999999964 799999999999876
Q ss_pred cC
Q 040875 904 GS 905 (930)
Q Consensus 904 G~ 905 (930)
-+
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 43
No 255
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=341.54 Aligned_cols=172 Identities=45% Similarity=0.671 Sum_probs=159.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC--HHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH--LRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--~~~lR~~ 762 (930)
|+++|++++|++ .++++|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 35899999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
++|+||+|.+|. .|++||+.+. ||||||||++|||||++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999999885 5999999542 99999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.+ ||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999998764 6999999999999985 99999999985
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=352.89 Aligned_cols=201 Identities=31% Similarity=0.464 Sum_probs=170.7
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHHHhhc
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLRSLRR 761 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR~ 761 (930)
.+ |++++|++. .+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 899999642 34 99999999 99999999999999999999999999999999999998643 3346788
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCCC---CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASDK---IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~~---~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+++|+||+|.+|. .|+++|+.++.... ..++++.++++..++.+.. ...+.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHH
Confidence 9999999999886 59999998753211 1234556667766664433 3456789999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998743 8999999999999864 9999999999999876
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=363.13 Aligned_cols=211 Identities=29% Similarity=0.433 Sum_probs=177.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++++
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 5899999999963 2458999999999999999999999999999999999999999999999998752 1223469
Q ss_pred EEEccCCCC---CcccHHHHhhcCCC---------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 764 ALVSQEPAL---FAVTVRENITYGAS---------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 764 ~~V~Q~p~L---F~gTIreNl~~g~~---------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+|+||+|.+ +..++++|+.++.. ...+++++.++++..++.+..+ + ...+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------R----QIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------C----CcccCCHHHHH
Confidence 999999965 46689999865311 0112345667788888765432 2 34579999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++|||||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999875 48999999999998864 9999777 8999999999998
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 64
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.1e-41 Score=355.36 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 5899999999964 3599999999999999999999999999999999999999999999987 3479
Q ss_pred EEEccCCCCCc---ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 764 ALVSQEPALFA---VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 764 ~~V~Q~p~LF~---gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+|+||+|.++. .|+++|+.+.+ ..+++++.++++.+++.+..+. ....||||||||++||||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP--GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALL 136 (251)
T ss_pred EEeccccccccccChhHHHHHhccc--cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 48999987643 3456788899999998776542 35689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcH
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGA 917 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~ 917 (930)
++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|+++++.. +..
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~---~~~ 212 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL---HPE 212 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC---CHH
Confidence 99999999999999999999999999988753 8999999999999865 999999965 7999999999874 345
Q ss_pred HHHHH
Q 040875 918 YYSLV 922 (930)
Q Consensus 918 y~~l~ 922 (930)
|.+++
T Consensus 213 ~~~~~ 217 (251)
T PRK09544 213 FISMF 217 (251)
T ss_pred HHHHh
Confidence 66655
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-41 Score=337.65 Aligned_cols=171 Identities=54% Similarity=0.872 Sum_probs=161.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 5789999999743 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.+|+.|++||+ ||+|||||++||||++++|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999997 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
+|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999998899999999985
No 260
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.8e-39 Score=388.54 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=166.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 369999999999632 3589999999999999999999999999999999999999999999876 247
Q ss_pred eEEEccCCCCCcccHHHHhhcC---CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 763 VALVSQEPALFAVTVRENITYG---ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g---~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
++|+||++. ..-++.+|..+. .....+++++.++++..++.+... ...+..||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHH
Confidence 999999973 223455553211 011345778888898888853211 134568999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHh
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV-EEGSHESLL 910 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl 910 (930)
+.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999999888888764 3 499999999999975 9999999999998 568877653
No 261
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.3e-41 Score=376.37 Aligned_cols=229 Identities=26% Similarity=0.424 Sum_probs=190.9
Q ss_pred cEEEEEEEEEcCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC----CcEEEECCccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARPD-VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL----KGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~----~G~I~idG~di~~~~~~~ 758 (930)
-++++|++..|..... ..+++||||+|.+||.+||||+|||||||++++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975422 25899999999999999999999999999999999999988 899999999999998766
Q ss_pred hh----cceEEEccCCC-CCcc--cHHHHhh----cCCCC--CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 759 LR----RHVALVSQEPA-LFAV--TVRENIT----YGASD--KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 759 lR----~~i~~V~Q~p~-LF~g--TIreNl~----~g~~~--~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
+| ++|++|||||. .++. ||.+-|. ..... +...++..+.++++++.+-... ...+..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 78999999994 5554 4544442 11100 1123456667777777543321 3578999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
|||||||+.||+||+.||++||+||||.+||..++++|.+.|+++. .|.++|+|||++..+.+ ||||+||++|++||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 49999999999999976 99999999999999
Q ss_pred ecChhHHhccCCCcHHHHHH
Q 040875 903 EGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 903 ~G~~~eLl~~~~~g~y~~l~ 922 (930)
.|++++++++ +...|-+..
T Consensus 236 ~G~~~~i~~~-p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSN-PQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhc-cCCcccHHH
Confidence 9999999985 666676543
No 262
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-41 Score=331.11 Aligned_cols=215 Identities=32% Similarity=0.482 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
-++++|++..|.. ..+|+||||++++||+++++||||+||||++++++|+.+|.+|+|.++|.||+..+.++. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999953 469999999999999999999999999999999999999999999999999999998775 788
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
|+||||.-.+|. -||+|||.+|...... +..+.++.+. +|. |...-...+.+|||||+|.+||||
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP~-Lker~~~~aG~LSGGEQQMLAiaR 149 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FPR-LKERRNQRAGTLSGGEQQMLAIAR 149 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Chh-HHHHhcCcccCCChHHHHHHHHHH
Confidence 999999999995 6999999987531111 1113333322 121 222233567799999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||..+||+|+|||||.+|-|.--+.|.+.|+++.+ +.||+.|-++.....+ +||.+||++|+|+..|+.+||.+
T Consensus 150 ALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999874 6799999999998865 99999999999999999999997
No 263
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=344.18 Aligned_cols=197 Identities=31% Similarity=0.478 Sum_probs=174.1
Q ss_pred cEEEEEEEEEcCCCCC------ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 684 HIELQYVHFAYPARPD------VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~------~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
-++++|++..|+.+.. ..+++||||+|++||++||||+|||||||+.++|.||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 4789999999975321 35899999999999999999999999999999999999999999999999988776
Q ss_pred HhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 758 SLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
. ...++++.+.|+.+++.+... ...+..||||||||++|||
T Consensus 82 ----------------------------~-~~~~~~v~elL~~Vgl~~~~~----------~ryPhelSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------K-EERRERVLELLEKVGLPEEFL----------YRYPHELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------h-hHHHHHHHHHHHHhCCCHHHh----------hcCCcccCchhhhhHHHHH
Confidence 1 223467899999999876432 2457899999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||.-+|+++|+|||||+||...+++|.+.+.++. .|-|.++|||+++.+++ ||||.||..|+|||.|+-++++. ++
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~-~p 201 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS-NP 201 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh-CC
Confidence 9999999999999999999999999999998875 38999999999999987 99999999999999999999998 47
Q ss_pred CcHHHHHH
Q 040875 915 AGAYYSLV 922 (930)
Q Consensus 915 ~g~y~~l~ 922 (930)
...|-+..
T Consensus 202 ~HpYTk~L 209 (268)
T COG4608 202 LHPYTKAL 209 (268)
T ss_pred CCHHHHHH
Confidence 78887644
No 264
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.9e-41 Score=349.77 Aligned_cols=195 Identities=31% Similarity=0.448 Sum_probs=166.7
Q ss_pred EEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHhhcc
Q 040875 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSLRRH 762 (930)
Q Consensus 687 ~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~lR~~ 762 (930)
++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++ ...+|++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 35899999999999999999999999999999999999999999999999976554 2346789
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS-----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~-----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++|++|+|.+|. .|++||+.++.. ....++++.++++..++.+..+ ....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999987 799999987421 0112345677777777755432 33568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL 895 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl 895 (930)
|||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999999875 489999999999988789999875
No 265
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.9e-41 Score=343.29 Aligned_cols=183 Identities=34% Similarity=0.530 Sum_probs=162.5
Q ss_pred cEEEEEEEEEcCCCC---CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEECCccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARP---DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~---~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~G~I~idG~di~~~~~~~ 758 (930)
.|+++||+++|++.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||+++.. .+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 589999999997420 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred hhcceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 759 LRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|++++|+||+|.+|. .|++||+.+... + . .||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------~----~------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------L----R------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------h----c------------------------cCCHHHHHHHHHHH
Confidence 7889999999999887 499999954310 0 0 89999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hhh-ccCEEEEEeCCEEEEec
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLS-TIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~-ti~-~~DrI~vl~~G~ive~G 904 (930)
||+++|+++||||||++||+++.+.+.+.|++.. +++|+|++||+++ .+. .||+|++|++|++++.|
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999875 4899999999997 454 49999999999998765
No 266
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-41 Score=343.27 Aligned_cols=182 Identities=27% Similarity=0.452 Sum_probs=161.4
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEECCccCCCCCHHHhh
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~G~I~idG~di~~~~~~~lR 760 (930)
.|+++|++++|++.. +.++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 589999999996421 246999999999999999999999999999999999986 489999999999885 5678
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
++++|++|+|.+|.+ |++||+.++.. ++ +||||||||++||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh------------------------cCCHHHhHHHHHHHHH
Confidence 899999999988875 99999965310 00 8999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh-h-hccCEEEEEeC-CEEEEec
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLST-I-QNCDMIAVLEQ-GRVVEEG 904 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~-G~ive~G 904 (930)
+++|++|+|||||++||+++.+.+.+.|++.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999875 48999999999984 4 56999999999 9999876
No 267
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.1e-40 Score=342.68 Aligned_cols=186 Identities=29% Similarity=0.450 Sum_probs=163.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCCcEEEECCccCCCCCHHHh-hc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGEDIRSYHLRSL-RR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R~ 761 (930)
++++|++++|++ .++|+|+||++++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 3599999999999999999999999999999999999 58999999999999998886654 56
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+++|+||+|.+|.++..+|+. . ..+.+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~-----------~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------R-----------YVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------h-----------hccccCCHHHHHHHHHHHHHhc
Confidence 699999999988764333331 0 0124799999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh--ccCEEEEEeCCEEEEecChhHHh
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ--NCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~--~~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|+|++|||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999875 4899999999999998 59999999999999999 55565
No 268
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-40 Score=355.39 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=179.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCCcEEEECCccCCCCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~lR~ 761 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5999999999963 3589999999999999999999999999999999998 6899999999999999888766654
Q ss_pred -ceEEEccCCCCCcc-cHHHHhhcCCCC--------CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCC-CCC
Q 040875 762 -HVALVSQEPALFAV-TVRENITYGASD--------KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL-QLS 826 (930)
Q Consensus 762 -~i~~V~Q~p~LF~g-TIreNl~~g~~~--------~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~-~LS 826 (930)
.++++||+|.+|.+ |+++|+.++... +.+ .+++.++++.+++.+. -++ .... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~----~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLS----RNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhc----cccccCCC
Confidence 58999999999875 789998653210 011 1334556666665421 112 2333 599
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCEEEEEeCCEEEEe
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN--CDMIAVLEQGRVVEE 903 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~ 903 (930)
||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 48999999999999875 899999999999999
Q ss_pred cChhHHh
Q 040875 904 GSHESLL 910 (930)
Q Consensus 904 G~~~eLl 910 (930)
|+++++.
T Consensus 234 ~~~~~~~ 240 (252)
T CHL00131 234 GDAELAK 240 (252)
T ss_pred cChhhhh
Confidence 9998543
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=398.26 Aligned_cols=228 Identities=27% Similarity=0.411 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC
Q 040875 684 HIELQYVHFAYPARP--------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~--------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~ 755 (930)
.++++|++++|+.+. ...+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.+.+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 599999999996321 235899999999999999999999999999999999999999999999999998776
Q ss_pred HH---HhhcceEEEccCC--CCCc-ccHHHHhhcCC--CCCCC----HHHHHHHHHHhcch-hHHhcCccccccccCCCC
Q 040875 756 LR---SLRRHVALVSQEP--ALFA-VTVRENITYGA--SDKID----ESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRG 822 (930)
Q Consensus 756 ~~---~lR~~i~~V~Q~p--~LF~-gTIreNl~~g~--~~~~~----d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G 822 (930)
.. .+|++++||||+| .++. -|+.+|+.+.. ....+ ++++.++++.+++. +... ..+
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RYP 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CCc
Confidence 43 4678999999999 3664 59999997531 01111 24566777777774 3322 345
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
.+||||||||++|||||+.+|++||||||||+||..+...+.+.|++..+ |.|+|+|||+++.+.. ||||++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999988753 7999999999999976 99999999999
Q ss_pred EEEecChhHHhccCCCcHHHH-HHH
Q 040875 900 VVEEGSHESLLAKGPAGAYYS-LVS 923 (930)
Q Consensus 900 ive~G~~~eLl~~~~~g~y~~-l~~ 923 (930)
|+|.|++++++.+ +...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~-p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFEN-PQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcC-CCCHHHHHHHh
Confidence 9999999999863 5566654 443
No 270
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.2e-40 Score=331.31 Aligned_cols=164 Identities=33% Similarity=0.477 Sum_probs=151.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999632 35899999999999999999999999999999999999999999999983 6899
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+||+|.++++|++||+.++ .+..||||||||++||||++++|+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred EECCCCccccccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999652 246899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
++||||||++||+++.+.+.+.|++. ++|+|++||+++....||+|++|++|.
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999999886 699999999999887899999998764
No 271
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.8e-41 Score=338.17 Aligned_cols=172 Identities=24% Similarity=0.479 Sum_probs=157.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~ 762 (930)
.|+++|++++| +|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999998 7899999999999999999999999999999999999999999999999988874 456889
Q ss_pred eEEEccCC----CCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 763 VALVSQEP----ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 763 i~~V~Q~p----~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
++|+||+| .++..|++||+.+... ||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------------cCHHHHHHHHHHHH
Confidence 99999996 3446799999965310 99999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
++++|++|+|||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999875 48999999999999976 999999999974
No 272
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-40 Score=349.76 Aligned_cols=208 Identities=29% Similarity=0.428 Sum_probs=172.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CCcEEEECCccCCCCCHHHhhcceEEEccCCC-CCc--
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA-LFA-- 774 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~-LF~-- 774 (930)
+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 343
Q ss_pred ccHHHHhhcCC-----CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEee
Q 040875 775 VTVRENITYGA-----SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLD 849 (930)
Q Consensus 775 gTIreNl~~g~-----~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLD 849 (930)
-|+.+|+.+.. .....++++.++++.+++.+. ++.....+.+||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 58988875421 111123457778888777521 12223456789999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 850 EATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 850 EaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
|||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++.. +.+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN-PKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-cCCHHHH
Confidence 99999999999999999998753 7899999999999965 999999999999999999999863 4455544
No 273
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-41 Score=320.12 Aligned_cols=213 Identities=33% Similarity=0.529 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
+++++++-+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|+.|++|+|.|||.|+.+- +...|++|+
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999964 33479999999999999999999999999999999999999999999999999874 467889999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+++-+.-|+. -|.||||.|... ... .+.++.+.-+..++.+.. |..+ .+||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv----~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRV----GEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHH----hhhchhhHHHHHHHHH
Confidence 9997666774 699999987531 112 234566666667776664 3443 4699999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+++|+|+|||||||+||..+.+.+++-|++... |++||+-||.++.+. -||||+++.+|++|..|+++++.+
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999998875 999999999999998 599999999999999999999975
No 274
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=381.29 Aligned_cols=199 Identities=24% Similarity=0.361 Sum_probs=167.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 35999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--CCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchh-HHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 764 ALVSQEP--ALFA-VTVRENITYGASDKIDESEIIEAAKAANAHD-FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 764 ~~V~Q~p--~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~-~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
+|+||++ .++. .|+.+|+....+ ...++++.++++..++.+ .. + .....||||||||++||||+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~-------~----~~~~~LSgGekqRl~La~~l 445 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKV-------T----EETRRFSGGEKARLVLALIV 445 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHh-------c----CchhhCCHHHHHHHHHHHHH
Confidence 9999985 3443 488888742111 234556777777777642 22 2 23568999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHh
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV-EEGSHESLL 910 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl 910 (930)
+.+|++|||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999876 4 599999999999975 9999999999998 678988874
No 275
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.5e-40 Score=351.62 Aligned_cols=207 Identities=29% Similarity=0.447 Sum_probs=177.5
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++||++. .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++.+.+..++++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 56777774 178999999999999999999999999999999999964 9999999999998888888889999
Q ss_pred EccCCC-CCcccHHHHhhcCCCCCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 766 VSQEPA-LFAVTVRENITYGASDKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 766 V~Q~p~-LF~gTIreNl~~g~~~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+||+|. ++..|+++|+.++.....+ ++++.++++..++.+.. ...+..||||||||++|||||+
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999985 5578999999876321111 23456677776665433 2346689999999999999999
Q ss_pred c-------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 841 K-------NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 841 ~-------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
. +|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 4899999999999775 599999999999999999999875
No 276
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.1e-40 Score=353.70 Aligned_cols=215 Identities=22% Similarity=0.343 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEECCccCCCCCHHHhh-c
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKIDGEDIRSYHLRSLR-R 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~G~I~idG~di~~~~~~~lR-~ 761 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999964 35899999999999999999999999999999999994 69999999999999888776654 5
Q ss_pred ceEEEccCCCCCcc-cHHHHhhcC-------CCCC-CCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 762 HVALVSQEPALFAV-TVRENITYG-------ASDK-IDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 762 ~i~~V~Q~p~LF~g-TIreNl~~g-------~~~~-~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
.++|++|+|.++.. |..+++... .... .+. +.+.+.++.. .+|+++.+... ..+||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 79999999987754 444443211 0000 011 1122222222 23444333211 1379999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc--cCEEEEEeCCEEEEecC
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN--CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G~ 905 (930)
||||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999988754 7999999999999976 89999999999999999
Q ss_pred hhHHhc
Q 040875 906 HESLLA 911 (930)
Q Consensus 906 ~~eLl~ 911 (930)
+++..+
T Consensus 230 ~~~~~~ 235 (248)
T PRK09580 230 FTLVKQ 235 (248)
T ss_pred HHHHHH
Confidence 986543
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.1e-40 Score=336.91 Aligned_cols=177 Identities=33% Similarity=0.549 Sum_probs=161.0
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57899999964 358999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 040875 766 VSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAV 845 (930)
Q Consensus 766 V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~I 845 (930)
+|| +++.+++.+++. ..+.+||||||||++||||++++|++
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999 667777766543 34568999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEec
Q 040875 846 LLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 846 LiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 904 (930)
+||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999988754 789999999999985 59999999999998764
No 278
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.7e-39 Score=379.52 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=168.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ ++ +
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------K 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------E
Confidence 35999999999964 3599999999999999999999999999999999999999999999954 21 5
Q ss_pred eEEEccCC-CCCc-ccHHHHhhcCCCC---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 763 VALVSQEP-ALFA-VTVRENITYGASD---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 763 i~~V~Q~p-~LF~-gTIreNl~~g~~~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++|+||++ .++. -|+++|+.++... ...+.+..++++..++.+. .. ......||||||||++|||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~----~~~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQ----QKKVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------Hh----cCchhhCCHHHHHHHHHHH
Confidence 99999997 5654 5999999875321 1123344556666655321 01 2345689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQ-GRVVE-EGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive-~G~~~eLl~ 911 (930)
|++.+|++|||||||++||+.+...+.+.|++. + .|+|+|||+++.+.. ||+|++|++ |++.+ .|+++++++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999999999876 3 499999999999875 999999986 88874 788888876
No 279
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.1e-40 Score=338.87 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=170.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 35899999999999999999999999999999999999999999999999987654 56789999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 765 LVSQEPALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
|+||+|.++ ..|++||+.+... ..+++++.++++..++.++.. ....+||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999876 6899999987543 346778888999998865432 234689999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEE
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVL 895 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl 895 (930)
+++||||||++||+.+.+.+.+.|++.. +++|+|++||+...+. .||+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998764 4899999999887665 58999887
No 280
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-41 Score=332.99 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
-++.+|++.+|. ...+++||||++++||.+||+|||||||||+++++.|+|+|++|+|.++|.||..++.+.. |..
T Consensus 4 lL~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 367899999995 4468999999999999999999999999999999999999999999999999999998775 677
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCC-----------C--CH----HHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDK-----------I--DE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~-----------~--~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
|+--+|.+.+|+ -|+-||+..+.... + ++ ++-++.|+.++|.+... +...+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-----------~~A~~ 149 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-----------RPAGN 149 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-----------chhhc
Confidence 899999999886 59999998763200 0 12 34455666666655432 34558
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||+||+.|+-|||||..+|++|+||||.|+|.++....+.+.|++..+ |.|+++|-||++.++. ||||+||+.|+++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999988889999999874 5999999999999987 9999999999999
Q ss_pred EecChhHHhc
Q 040875 902 EEGSHESLLA 911 (930)
Q Consensus 902 e~G~~~eLl~ 911 (930)
.+|+|+|..+
T Consensus 230 AeG~P~eV~~ 239 (250)
T COG0411 230 AEGTPEEVRN 239 (250)
T ss_pred ccCCHHHHhc
Confidence 9999999986
No 281
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-41 Score=309.76 Aligned_cols=194 Identities=30% Similarity=0.497 Sum_probs=173.7
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHH
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVR 778 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIr 778 (930)
+.++|+|+||++++||.++|.||||||||||++.++-+..|++|++++.|.|+++++.+.+|++++|+.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC---CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCC
Q 040875 779 ENITYGAS---DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855 (930)
Q Consensus 779 eNl~~g~~---~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaL 855 (930)
||+-|-.. ...+.+...+.++++++.+.+- ..+-.+||||||||+||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L----------~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSIL----------TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhh----------cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99987421 2335555666777777766543 3456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEccCchh-hhccCEEEEEeCCEEEE
Q 040875 856 DSQSEKLVQEALERLM--VGRTSVVVAHRLST-IQNCDMIAVLEQGRVVE 902 (930)
Q Consensus 856 D~~te~~i~~~i~~~~--~~~TvI~IaHrl~t-i~~~DrI~vl~~G~ive 902 (930)
|+.+.+.|.+.|.+.+ ++..++-|||+..- ++++||++-+..|++-|
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999887 47899999999988 78899999999998744
No 282
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.1e-40 Score=348.28 Aligned_cols=192 Identities=32% Similarity=0.442 Sum_probs=164.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-ccHHHHh
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENI 781 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIreNl 781 (930)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. +.+|+||+|.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999887 6999999
Q ss_pred hcCCC---CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCC
Q 040875 782 TYGAS---DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSA 854 (930)
Q Consensus 782 ~~g~~---~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSa 854 (930)
.++.. ...++ +++.++++..++.+..+ ..+.+||||||||++|||||+++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76410 12222 23566677777654432 34568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 855 LDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 855 LD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 37999999999999865 9999999999999999987764
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-40 Score=385.66 Aligned_cols=214 Identities=25% Similarity=0.429 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhh-cc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR-RH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR-~~ 762 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..+++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999888776655 57
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCCC-CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 763 VALVSQEPALFAV-TVRENITYGASDK-IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~~-~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
++||||+|.+|.. |++||+.++.... ..++++.++++..++.+.. + ....+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-------D----SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-------c----CChhhCCHHHHHHHHHHHHHH
Confidence 9999999988874 9999998864311 1234566677777664322 2 345689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
++|++|||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998874 48999999999999865 99999999999999999998864
No 284
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.4e-39 Score=379.22 Aligned_cols=202 Identities=26% Similarity=0.328 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ ++ ++
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3599999999999999999999999999999999999999999999955 21 69
Q ss_pred EEEccCCC-CCc-ccHHHHhhcCCCC-CC--CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 764 ALVSQEPA-LFA-VTVRENITYGASD-KI--DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 764 ~~V~Q~p~-LF~-gTIreNl~~g~~~-~~--~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+|+||+|. ++. -|++||+.++... .. .+.+..++++..++.+. ........||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 5999999875321 11 13334455666555321 1123456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhc
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQ-GRVVE-EGSHESLLA 911 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive-~G~~~eLl~ 911 (930)
|+.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++++ .|++++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999999986 3 499999999999875 999999997 68774 578877664
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-40 Score=338.09 Aligned_cols=195 Identities=23% Similarity=0.353 Sum_probs=166.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+ ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999875 4467789999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 765 LVSQEPALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
|+||++.++ ..|+++|+.++.....++.++.++++..++.+.. +. ...+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DY----PCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hC----ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 5899999987632122344566777766664322 22 23479999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEE
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999863 58999999999999999997554
No 286
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-40 Score=386.64 Aligned_cols=214 Identities=24% Similarity=0.392 Sum_probs=182.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccCCCCCHHH-hh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDIRSYHLRS-LR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~-lR 760 (930)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..+ .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999953 3599999999999999999999999999999999999996 7999999999998877654 46
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCCC----CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGASD----KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~~----~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
++++||||+|.+|. -|++||+.++... ..+. +++.++++..++.+. ......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 78999999998886 4999999876321 1122 334555665554322 22345689999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++|||||+.+|+|||||||||+||+++...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998874 48999999999999875 999999999999999999887
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
..
T Consensus 231 ~~ 232 (506)
T PRK13549 231 TE 232 (506)
T ss_pred CH
Confidence 53
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=387.62 Aligned_cols=214 Identities=23% Similarity=0.358 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.... |++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999988876553 567
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCC-----C---CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASD-----K---ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~-----~---~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
++||||+|.+|.+ |++||+.++... . .+ ++++.++++.+++.+. .+ ....+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LD----EKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cc----cchhhCCHHH
Confidence 9999999988864 999999875310 1 01 1334555666555322 22 3456899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChh
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 907 (930)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998875 48999999999999975 9999999999999999998
Q ss_pred HHhc
Q 040875 908 SLLA 911 (930)
Q Consensus 908 eLl~ 911 (930)
++..
T Consensus 231 ~~~~ 234 (510)
T PRK09700 231 DVSN 234 (510)
T ss_pred hCCH
Confidence 8753
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.2e-40 Score=338.09 Aligned_cols=196 Identities=23% Similarity=0.345 Sum_probs=170.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 35899999999999999999999999999999999999999999999999987654 45678999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC--CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 765 LVSQEPALFA-VTVRENITYGAS--DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
|++|++.++. .|++||+.+..+ ...+++++.++++..++.++.+ .....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhc
Confidence 9999998876 699999977532 1134567888999998876543 2356899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhcc-CEEEEE
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNC-DMIAVL 895 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl 895 (930)
+|++++|||||++||+++.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 489999999999999764 688776
No 289
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=390.66 Aligned_cols=226 Identities=27% Similarity=0.393 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC----------
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR---------- 752 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~---------- 752 (930)
-|+++|++++|+... ..++|+|+||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 699999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---Hhh-cceEEEccCC--CCCc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccC
Q 040875 753 SYHLR---SLR-RHVALVSQEP--ALFA-VTVRENITYGAS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCG 819 (930)
Q Consensus 753 ~~~~~---~lR-~~i~~V~Q~p--~LF~-gTIreNl~~g~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vg 819 (930)
+.+.. .+| ++|+||+|+| .++. -||+||+.++.. ...+ ++++.++++.+++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 5799999999 5776 599999986421 0112 2456667777776321 01122
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEe
Q 040875 820 DRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 820 e~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|||+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 4567899999999999999999999999999999999999999999999875 3 8999999999999865 99999999
Q ss_pred CCEEEEecChhHHhccCCCcHH
Q 040875 897 QGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 897 ~G~ive~G~~~eLl~~~~~g~y 918 (930)
+|+|++.|++++++.+ +...|
T Consensus 244 ~G~i~~~g~~~~~~~~-~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHA-PQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcC-CCChh
Confidence 9999999999999863 33334
No 290
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.8e-40 Score=345.42 Aligned_cols=193 Identities=26% Similarity=0.437 Sum_probs=160.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEc-cCCCCC-cccH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVS-QEPALF-AVTV 777 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~-Q~p~LF-~gTI 777 (930)
.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. ...+|++++|+| |++.+| .-|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999998 667665 5799
Q ss_pred HHHhhcCCC-CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccC
Q 040875 778 RENITYGAS-DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEAT 852 (930)
Q Consensus 778 reNl~~g~~-~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaT 852 (930)
+||+.+... ...+++ ++.++++..++.+. +++ ....||||||||++|||||+.+|++|||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~----~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDT----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcC----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999975421 112232 23444555554332 233 34579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 853 SALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 853 SaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998743 7899999999998865 9999999999998765
No 291
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-39 Score=322.74 Aligned_cols=159 Identities=32% Similarity=0.551 Sum_probs=148.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcce
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i 763 (930)
|+++|++++|++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999964 359999999999999999999999999999999999999999999999999988876 4467889
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 764 ALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 764 ~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
+|+|| ||||||||++||||++++|
T Consensus 78 ~~~~q--------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 78 AMVYQ--------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
++++|||||++||+++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 48999999999998865 99999999999986
No 292
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.5e-40 Score=304.14 Aligned_cols=209 Identities=31% Similarity=0.442 Sum_probs=176.2
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH---Hh
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR---SL 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~l 759 (930)
.|++++++..-+... ...+|+||+|.|++||.+|||||||||||||+.+|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 578888888775432 33599999999999999999999999999999999999999999999999999999854 34
Q ss_pred h-cceEEEccCCCCC-cccHHHHhhcCCC--CC-CCH--HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 R-RHVALVSQEPALF-AVTVRENITYGAS--DK-IDE--SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 R-~~i~~V~Q~p~LF-~gTIreNl~~g~~--~~-~~d--~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
| +++++|+|..+|. +-|-.||+.+-.. ++ ..| +.-.+.|+++||.+ .+...|.+|||||.||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-----------Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-----------RLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-----------ccccCccccCchHHHH
Confidence 4 7899999999876 5789999975321 11 112 22345566666544 4446678999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 903 (930)
+|||||+.-.|+||+-||||-+||.+|.+.|.+.+-++. .|.|.++|||++.....|||++-|.+|++++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999987664 48999999999999999999999999999864
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.4e-38 Score=381.85 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ ++
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5999999999963 35899999999999999999999999999999999999999999999 5432 59
Q ss_pred EEEccCC-CCCc-ccHHHHhhcCCCCC-CC--HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 764 ALVSQEP-ALFA-VTVRENITYGASDK-ID--ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 764 ~~V~Q~p-~LF~-gTIreNl~~g~~~~-~~--d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+|++|++ .++. -|+.+|+.++.+.. .+ +.++.+.++..++.+. ..+ .....||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~----~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAM----TPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHh----ChhhhCCHHHHHHHHHHHH
Confidence 9999987 4665 49999998753211 11 3445566666555311 122 2345799999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEe-CCEEEEe-cChhHHh
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLE-QGRVVEE-GSHESLL 910 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-~G~ive~-G~~~eLl 910 (930)
++.+|++|||||||++||..+...+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|++.++ |++++-+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999875 5699999999999965 99999998 8999874 6777654
No 294
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=309.19 Aligned_cols=219 Identities=32% Similarity=0.501 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----------
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS---------- 753 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~---------- 753 (930)
.++.+|+..+|.. ..|||+||++-++|+.+.|+|.|||||||+++++.=+-.|++|+|.++|..|+-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 6899999999953 349999999999999999999999999999999999999999999999998742
Q ss_pred ---CCHHHhhcceEEEccCCCCCc-ccHHHHhhcCCCC--CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCC
Q 040875 754 ---YHLRSLRRHVALVSQEPALFA-VTVRENITYGASD--KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823 (930)
Q Consensus 754 ---~~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~--~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~ 823 (930)
-.++.+|+++++|+|+..|.+ -|+-||+.-.|-. ..+. |+-+..|.++|+.|.-+ ..+.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYPA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCcc
Confidence 125678999999999998885 7999999654421 1222 23344567777766544 4567
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
.|||||.||++|||||..+|+++++|||||||||+---.+.+.++++. .|+|.++|||-+.+.++ +.+++.|++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 999999999999999999999999999999999998888999999886 59999999999999998 8999999999999
Q ss_pred EecChhHHhccCCCcH
Q 040875 902 EEGSHESLLAKGPAGA 917 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~ 917 (930)
|+|+|++++.+ +.+.
T Consensus 232 E~G~P~qvf~n-P~S~ 246 (256)
T COG4598 232 EEGPPEQVFGN-PQSP 246 (256)
T ss_pred ccCChHHHhcC-CCCH
Confidence 99999999985 5553
No 295
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=384.33 Aligned_cols=213 Identities=27% Similarity=0.401 Sum_probs=180.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 762 (930)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 35899999999999999999999999999999999999999999999999997665544 4678
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGASD-----KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~-----~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
++||||+|.+|. -|++||+.++... ..+. +++.++++..++.+. .+ ....+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~----~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SD----KLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------cc----CchhhCCHHHHHH
Confidence 999999998886 4999999875320 1122 234455555555332 12 3456899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999998864 47899999999999865 9999999999999999988764
No 296
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9.8e-40 Score=385.44 Aligned_cols=217 Identities=30% Similarity=0.509 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC
Q 040875 684 HIELQYVHFAYPAR--------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~--------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~ 755 (930)
.|+++|++++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|.+||.++.+.+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 58999999999631 12468999999999999999999999999999999999995 8999999999998776
Q ss_pred HHH---hhcceEEEccCC--CCCc-ccHHHHhhcCCC-C--CC----CHHHHHHHHHHhcch-hHHhcCccccccccCCC
Q 040875 756 LRS---LRRHVALVSQEP--ALFA-VTVRENITYGAS-D--KI----DESEIIEAAKAANAH-DFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 756 ~~~---lR~~i~~V~Q~p--~LF~-gTIreNl~~g~~-~--~~----~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~ 821 (930)
..+ +|++++||||+| .+|. .|++||+.++.. . .. .++++.++++..++. +... ..
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-----------RY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------cC
Confidence 543 478899999998 3665 599999986421 0 01 123456677777664 2222 34
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|||+|||+++.+.. ||||++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 56899999999999999999999999999999999999999999999875 27999999999999875 9999999999
Q ss_pred EEEEecChhHHhcc
Q 040875 899 RVVEEGSHESLLAK 912 (930)
Q Consensus 899 ~ive~G~~~eLl~~ 912 (930)
++++.|++++++++
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999863
No 297
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=337.74 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=167.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+++... ..++++
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5999999999964 3589999999999999999999999999999999999999999999999988752 446689
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC--CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 764 ALVSQEPALFAV-TVRENITYGAS--DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+|+||+|.+|.+ |++||+.+... +...++.+.++++..++.+. ++ ....+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~----~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------ED----TLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------cc----CChhhCCHHHHHHHHHHHHHh
Confidence 999999999886 99999976421 11123455667777665432 23 334689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeC
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQ 897 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~ 897 (930)
++|++|+|||||++||+++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 57999999999999965 899999974
No 298
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=317.34 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RR 761 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~ 761 (930)
+.+..+|+..+|.++ +|.+||||++++||.||+.||||+||||.+..+.|+.+|++|+|.+||.||+.++.+.. |.
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357889999999654 48999999999999999999999999999999999999999999999999999998764 77
Q ss_pred ceEEEccCCCCCcc-cHHHHhhcCCCC-----C--CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 762 HVALVSQEPALFAV-TVRENITYGASD-----K--IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 762 ~i~~V~Q~p~LF~g-TIreNl~~g~~~-----~--~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
.|+|+||||.+|.+ ||+|||..-..- . ...+++.+.|+..++...-. ..+.+||||||.|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-----------~~a~sLSGGERRR~ 148 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-----------SKAYSLSGGERRRV 148 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-----------CcccccccchHHHH
Confidence 89999999999965 999999753210 1 11223556666666654322 45789999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~-ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
-|||||..+|+.++||||.|++||-+-..||+.|+.+. +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999886 4888999999985 566799999999999999999999997
No 299
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-39 Score=379.45 Aligned_cols=211 Identities=24% Similarity=0.304 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+..++|+++
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 38999999999643 489999999999999999999999999999999999999999999999988877777888889
Q ss_pred EEEccCCCC--C-------cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 764 ALVSQEPAL--F-------AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 764 ~~V~Q~p~L--F-------~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
+++||+|.+ + .-|+++|+.++. ..++++.++++..++.+... .....||||||||++
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTL 145 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHH
Confidence 999999753 2 458999985431 23456788888888765432 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+.+|++|+|||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.+ ||+|++|++|++++.|++++++.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998875 47899999999999876 99999999999999999999875
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-39 Score=380.43 Aligned_cols=220 Identities=28% Similarity=0.431 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCC-CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCCCHH
Q 040875 684 HIELQYVHFAYPAR-PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~-~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~~~ 757 (930)
-|+++|++++|++. ...++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 699999999999887654
Q ss_pred H---hh-cceEEEccCCC--CCc-ccHHHHhhcC------CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 758 S---LR-RHVALVSQEPA--LFA-VTVRENITYG------ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 758 ~---lR-~~i~~V~Q~p~--LF~-gTIreNl~~g------~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
+ +| ++++||||+|. ++. -|+++|+.+. .+.....+++.++++.+++.+.... ......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhhCCcc
Confidence 3 33 68999999985 443 5899998632 1101123456778888877542110 1234668
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999864 38999999999999875 9999999999999
Q ss_pred EecChhHHhc
Q 040875 902 EEGSHESLLA 911 (930)
Q Consensus 902 e~G~~~eLl~ 911 (930)
+.|++++++.
T Consensus 237 ~~g~~~~~~~ 246 (529)
T PRK15134 237 EQNRAATLFS 246 (529)
T ss_pred EeCCHHHHhh
Confidence 9999999986
No 301
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=380.87 Aligned_cols=209 Identities=29% Similarity=0.415 Sum_probs=177.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~ 762 (930)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999876543 456889
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCC---C-CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASD---K-ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~---~-~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++||||+|.+|.+ |+++|+.++... . .+ ++++.++++.+++.+. ......+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 9999999988875 999999875310 1 12 2345556666655321 1234568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 906 (930)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++++.+++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999998874 48999999999999865 999999999999987654
No 302
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-39 Score=310.69 Aligned_cols=213 Identities=29% Similarity=0.465 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+.+|++++-.++ .+|+++||+++|||.+||+||||||||||+++|.|-..|++|++.++|+|+.+++..++-++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 7889999988544 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CCcccHHHHhhcCCCC-----CCCHHH--HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 765 LVSQEPA-LFAVTVRENITYGASD-----KIDESE--IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 765 ~V~Q~p~-LF~gTIreNl~~g~~~-----~~~d~e--i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+.||+.. =|.=|++|=+.+|.-. +..+++ ..+++.++++..+-. ..=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----------R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----------RDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----------cchhhcCchHHHHHHHH
Confidence 9999885 6899999999998631 112333 567888888765532 23358999999999999
Q ss_pred HHhcc------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 837 RAILK------NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 837 RALl~------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
|.|.. ++++|+||||||+||...+..+.+..++.. +|..|++|=|+|+... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99984 346999999999999999999999999876 5899999999999875 599999999999999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
.+.
T Consensus 228 vlt 230 (259)
T COG4559 228 VLT 230 (259)
T ss_pred hcC
Confidence 986
No 303
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=379.52 Aligned_cols=210 Identities=23% Similarity=0.366 Sum_probs=176.8
Q ss_pred EEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcceEE
Q 040875 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRHVAL 765 (930)
Q Consensus 687 ~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i~~ 765 (930)
++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 358999999999999999999999999999999999999999999999999976654 446788999
Q ss_pred EccCCCCCc-ccHHHHhhcCCCC--C--CCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 766 VSQEPALFA-VTVRENITYGASD--K--IDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 766 V~Q~p~LF~-gTIreNl~~g~~~--~--~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
|||+|.+|. .|++||+.++... . .+.+ ++.++++..++ +........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----------DIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHHHHHH
Confidence 999997765 6999999875321 1 1222 33444444444 2222345678999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
|||+++|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999999998864 48999999999999865 9999999999999999988864
No 304
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-39 Score=338.06 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=164.7
Q ss_pred EEEEEEEEEcCCC---C-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC--C--ccCCCCCH
Q 040875 685 IELQYVHFAYPAR---P-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID--G--EDIRSYHL 756 (930)
Q Consensus 685 I~~~nvsf~Y~~~---~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id--G--~di~~~~~ 756 (930)
|+++|++++|+.. . ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| | +++.+.+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2368999999999999999999999999999999999999999999998 4 27766665
Q ss_pred HH---h-hcceEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 757 RS---L-RRHVALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 757 ~~---l-R~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
.. + +++++|+||+|.+|. -|++||+.+... ...+ ++++.++++..++.+... + ..+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------H----LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------h----CCcccCC
Confidence 43 3 467999999998776 499999975311 0112 345566666666643221 1 2466899
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEE
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVL 895 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl 895 (930)
||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||||+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 4899999999999986 59999876
No 305
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.6e-39 Score=330.62 Aligned_cols=194 Identities=23% Similarity=0.340 Sum_probs=165.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .++|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999963 35899999999999999999999999999999999999999999999999998765 46778999
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
|+||++.+|. .|+++|+.+... ....++++.++++..++.++.. ....+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998886 799999976432 1112446788888888876543 23458999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhhhccCEEEE
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERL-MVGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
|++++|||||++||+.+.+.+.+.|++. .++.|+|++||+...+. ||+.+.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999999886 35899999999985433 577654
No 306
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-39 Score=358.40 Aligned_cols=214 Identities=25% Similarity=0.342 Sum_probs=175.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++|+|+++...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999765445699999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHHH----HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGAS-DKIDESE----IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~e----i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++++.+.++. .|++||+.+... ...++++ +.++++.+++.++.. ..+..||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 2333444443 599999976321 1223333 445677777765543 345689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPA 915 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~ 915 (930)
||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.. .-
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~--~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD--HY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh--hH
Confidence 9999999999999999999999999999998864 48999999999999875 99999999999999999999986 33
Q ss_pred cHHHHHHH
Q 040875 916 GAYYSLVS 923 (930)
Q Consensus 916 g~y~~l~~ 923 (930)
..|.+++.
T Consensus 235 ~~~~~~~~ 242 (549)
T PRK13545 235 DEFLKKYN 242 (549)
T ss_pred HHHHHHHh
Confidence 44555443
No 307
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.3e-39 Score=331.66 Aligned_cols=195 Identities=28% Similarity=0.381 Sum_probs=168.6
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD---PDVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc---hhhHhhcE
Confidence 789999999963 358999999999999999999999999999999999999999999999998753 22788999
Q ss_pred EEccCCCCC-cccHHHHhhcCCC-CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 765 LVSQEPALF-AVTVRENITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~-~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
|++|++.++ ..|+++|+.+... ....++++.++++..++.++.. ....+||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999988765 6899999976421 1234567888999998876432 12358999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeC
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. |+++-++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 58999999999999988 99988854
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.6e-39 Score=378.57 Aligned_cols=222 Identities=23% Similarity=0.419 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCC--CCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC-Ccc---CCCCC--
Q 040875 684 HIELQYVHFAYPA--RPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID-GED---IRSYH-- 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~--~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id-G~d---i~~~~-- 755 (930)
.|+++|++++|++ +...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.+ +.+.+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHhhcceEEEccCCCCCc-ccHHHHhhcCC----CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 756 -LRSLRRHVALVSQEPALFA-VTVRENITYGA----SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 756 -~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~----~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
...+|++++|+||+|.+|. -|++||+.+.. +....++++.++++.+++.+.- + +.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~---~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK---A---EEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc---c---hhhhhCChhhCCHHH
Confidence 2356778999999998886 59999997531 1011223456667777664210 0 001123466899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 906 (930)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. + +.|+|+|||+++.+.. ||||++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998875 3 7999999999999875 999999999999999999
Q ss_pred hHHhc
Q 040875 907 ESLLA 911 (930)
Q Consensus 907 ~eLl~ 911 (930)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 99875
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.7e-39 Score=336.41 Aligned_cols=187 Identities=29% Similarity=0.511 Sum_probs=162.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCC---CcccHHHHhhcC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPAL---FAVTVRENITYG 784 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~L---F~gTIreNl~~g 784 (930)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.|++++|+||+|.+ |+.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999999864 357889999999976 468999999765
Q ss_pred CC---------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCC
Q 040875 785 AS---------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855 (930)
Q Consensus 785 ~~---------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaL 855 (930)
.. ...+++++.++++.+++.++.. ....+||||||||++|||||+++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELAD-----------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 21 0112345778888888865442 234579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 856 DSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 856 D~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 9999999999999875 48999999999998865 9999999 799999999999875
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.2e-39 Score=378.06 Aligned_cols=213 Identities=23% Similarity=0.413 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccCCCCCHHH-hhc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDIRSYHLRS-LRR 761 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~-lR~ 761 (930)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+..+ .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3589999999999999999999999999999999999987 7999999999998877654 467
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASD-----KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~-----~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
+++||||+|.+|. -|++||+.++... ..+. +++.++++..++.+. ++ ......|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~---~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD-------NV---TRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCC-------cc---cCchhhCCHHHHH
Confidence 8999999998876 4999999875320 0111 234455555554321 11 1235579999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
|++|||||+.+|++|||||||++||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998864 48899999999999975 999999999999999988765
Q ss_pred h
Q 040875 910 L 910 (930)
Q Consensus 910 l 910 (930)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 3
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-38 Score=379.97 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=172.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC--CcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-cc
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL--KGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VT 776 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~--~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gT 776 (930)
..+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. .+.+++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 45999999999999999999999999999999999999885 899999999874 245678999999999995 59
Q ss_pred HHHHhhcCC----CCCCCHHH----HHHHHHHhcchhHHhcCccccccccCCC-CCCCChHHHHHHHHHHHhccCCCEEE
Q 040875 777 VRENITYGA----SDKIDESE----IIEAAKAANAHDFIAGLSEGYDTWCGDR-GLQLSGGQKQRIAIARAILKNPAVLL 847 (930)
Q Consensus 777 IreNl~~g~----~~~~~d~e----i~~al~~~~l~~~i~~Lp~gldt~vge~-G~~LSgGQrQrlaLARALl~~~~ILi 847 (930)
++||+.+.. +...++++ +.++++..+| ++..||.+|+. +..||||||||++|||||+.+|+||+
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999998742 11234433 3344444444 34568888764 67899999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh-h-hccCEEEEEeCCEEEEecChhHHhc
Q 040875 848 LDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLST-I-QNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 848 LDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||++||+.+...+.+.|++.. +|+|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999876 58999999999984 5 5599999999999999999999864
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.5e-39 Score=327.62 Aligned_cols=190 Identities=21% Similarity=0.339 Sum_probs=163.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ ..++ ++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999953 2344 599999999999999999999999999999999999999999999987543 45699
Q ss_pred EEccCCC-CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 765 LVSQEPA-LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 765 ~V~Q~p~-LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
|+||++. +|..|++||+.+.......+++++++++.+++.+... ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999984 5789999999875321124567788888888765543 346789999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHH-cCCCeEEEEccCchhhhccCEEE
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERL-MVGRTSVVVAHRLSTIQNCDMIA 893 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~ 893 (930)
++++|||||++||+++.+.+.+.|++. .+++|+|++||+++.++.+|.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999754 46899999999999999999764
No 313
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=380.70 Aligned_cols=216 Identities=30% Similarity=0.467 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh---
Q 040875 684 HIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL--- 759 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l--- 759 (930)
.++++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 589999999996421 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcceEEEccCCCCCc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 760 -RRHVALVSQEPALFA-VTVRENITYGASD-KI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 760 -R~~i~~V~Q~p~LF~-gTIreNl~~g~~~-~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
|++++|+||+|.+|. .|+.||+.++... .. .+++..+.++..++.+.. ...+.+||+||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----------~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV-----------EYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------cCCcccCCHHHHHH
Confidence 678999999999996 5999999863210 11 123445556666655443 34456899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+..|||+++|++|++++.|+++|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999999875 489999999999999889999999999999999999886
No 314
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-39 Score=376.40 Aligned_cols=217 Identities=22% Similarity=0.393 Sum_probs=178.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-CCCcEEEECCccCCCCCH-HHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-PLKGVVKIDGEDIRSYHL-RSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-~~~G~I~idG~di~~~~~-~~lR~ 761 (930)
.|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5999999999953223458999999999999999999999999999999999998 599999999999875543 44677
Q ss_pred ceEEEccCC---CCC-cccHHHHhhcCCCC---C---CCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 762 HVALVSQEP---ALF-AVTVRENITYGASD---K---IDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p---~LF-~gTIreNl~~g~~~---~---~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+++||||+| .+| .-|+.||+.++... . .+. +++.++++.+++.+ .........|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 899999997 355 46999999865210 0 111 23445555555421 012244668999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +|+|||+|||+++.+.. |||+++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 48999999999999865 99999999999999999
Q ss_pred hhHHh
Q 040875 906 HESLL 910 (930)
Q Consensus 906 ~~eLl 910 (930)
++++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88764
No 315
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-38 Score=376.29 Aligned_cols=213 Identities=29% Similarity=0.468 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEEC---------------
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLKGVVKID--------------- 747 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~G~I~id--------------- 747 (930)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999953 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------CCC---HHHhhcceEEEccC-CCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhc
Q 040875 748 --------GEDIR-------SYH---LRSLRRHVALVSQE-PALFA-VTVRENITYGAS-DKID----ESEIIEAAKAAN 802 (930)
Q Consensus 748 --------G~di~-------~~~---~~~lR~~i~~V~Q~-p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~ 802 (930)
|.++. ..+ ...+|++++||||+ +.+|. -|++||+.++.. ...+ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 56776 599999976421 0122 234666777777
Q ss_pred chhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEc
Q 040875 803 AHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVA 880 (930)
Q Consensus 803 l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~Ia 880 (930)
+.+... ....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .|+|||+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 754432 3456899999999999999999999999999999999999999999999874 389999999
Q ss_pred cCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 881 HRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 881 Hrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+++.+.. ||+|++|++|++++.|++++++.
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999975 99999999999999999998875
No 316
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=6.5e-39 Score=327.35 Aligned_cols=175 Identities=35% Similarity=0.519 Sum_probs=149.8
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhhcceEEEccCC--CCCcc
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLRRHVALVSQEP--ALFAV 775 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~~i~~V~Q~p--~LF~g 775 (930)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++++|+||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 45899999999999999999999999999999999999999999999999985 233456788999999999 58889
Q ss_pred cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeec
Q 040875 776 TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850 (930)
Q Consensus 776 TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDE 850 (930)
|++||+.++.. ...+ +++++++++..++.++.+ ....+||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421 1122 235667777777765543 2456899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh
Q 040875 851 ATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLST 885 (930)
Q Consensus 851 aTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~t 885 (930)
||++||+++.+.+.+.|++.. +++|+|+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998875 48999999999875
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.8e-38 Score=404.19 Aligned_cols=217 Identities=24% Similarity=0.397 Sum_probs=190.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++. +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.++|.|+.+ +..+.|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3469999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++++||++.+|. -|++|||.+... ...+ ++++.+.++.++|.+... ....+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999986 599999986421 1111 345667777777755432 45678999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
|||+.+|+||+||||||+||+.+.+.+.+.|++..+|+|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999998789999999999999975 999999999999999999999864
No 318
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=336.37 Aligned_cols=213 Identities=24% Similarity=0.354 Sum_probs=172.5
Q ss_pred cEEEEEEEEEcCCC-----------------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 684 HIELQYVHFAYPAR-----------------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~-----------------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
.|+++||+..|..+ ...++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777777666321 1235899999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHH----HHHHHhcchhHHhcCccccccccCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENITYGAS-DKIDESEII----EAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~ei~----~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
||. +++++|++.++. .|+++|+.++.. ...+.++.. ++++..++.+.+ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 994 567888887664 699999976321 123334333 344444554433 34
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
.+.+||||||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 567899999999999999999999999999999999999999999998764 48999999999999875 9999999999
Q ss_pred EEEEecChhHHhccCCCcHHHHHH
Q 040875 899 RVVEEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 899 ~ive~G~~~eLl~~~~~g~y~~l~ 922 (930)
++++.|+++++++ +-+.|.+..
T Consensus 220 ~i~~~g~~~~~~~--~~~~~~~~~ 241 (264)
T PRK13546 220 KLKDYGELDDVLP--KYEAFLNDF 241 (264)
T ss_pred EEEEeCCHHHHHH--HhHHHHHHH
Confidence 9999999999997 334444443
No 319
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.7e-36 Score=325.36 Aligned_cols=203 Identities=21% Similarity=0.365 Sum_probs=179.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+|++|++.=|+. +..+.+|+||+|+.|+.+-|+||||||||||++.|.|+++..+|++.--...-. +.
T Consensus 432 n~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KD 502 (659)
T ss_pred ceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------Cc
Confidence 579999999999875 445678899999999999999999999999999999999999999975322100 45
Q ss_pred eEEEccCCCCCcccHHHHhhcCCC------CCCCHHHHHHHHHHhcchhHHhcCccccccccC-CCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALFAVTVRENITYGAS------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCG-DRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vg-e~G~~LSgGQrQrlaL 835 (930)
+-|+||.|++=.||+||-+.|-.. ...+|++|.+.|+.++|.+.++. -+|+|+++. +-...||+||+||+|+
T Consensus 503 lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHH
Confidence 999999999999999999988521 24689999999999999887664 579998875 4478999999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
||-++.+|++-+|||+|||+|.+.|..+.+.+++. |.|.|.|.||-+.-+.=|.++-|+.
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999877 9999999999999998999999985
No 320
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.1e-38 Score=380.81 Aligned_cols=217 Identities=27% Similarity=0.356 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCC------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCC
Q 040875 684 HIELQYVHFAYPARP------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSY 754 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~ 754 (930)
+++|.++. +++..+ ++++|+|+|++++|||.+||+||||||||||+++|.|..+|. +|+|.+||.+++
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 56777766 554322 457999999999999999999999999999999999999885 799999999875
Q ss_pred CHHHhhcceEEEccCCCCCc-ccHHHHhhcCCC----CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCC--CC
Q 040875 755 HLRSLRRHVALVSQEPALFA-VTVRENITYGAS----DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDR--GL 823 (930)
Q Consensus 755 ~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~----~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~--G~ 823 (930)
...+|+.++||||+|.+|. .||||||.++.. ...+.+ ++.++++..+ |++..||.+|+. +.
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~ 165 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVK 165 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCC
Confidence 4678899999999999885 599999987532 122333 2344444443 345679999984 47
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hh-hccCEEEEEeCCEE
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLS-TI-QNCDMIAVLEQGRV 900 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~-ti-~~~DrI~vl~~G~i 900 (930)
.||||||||++|||||+.+|+|++||||||+||+.+...+.+.+++.. +|+|+|+++|+++ .+ ..||+|++|++|++
T Consensus 166 ~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 166 GLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred CcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 899999999999999999999999999999999999999999999876 4899999999996 34 56999999999999
Q ss_pred EEecChhHHhc
Q 040875 901 VEEGSHESLLA 911 (930)
Q Consensus 901 ve~G~~~eLl~ 911 (930)
+++|+++++.+
T Consensus 246 v~~G~~~~~~~ 256 (617)
T TIGR00955 246 AYLGSPDQAVP 256 (617)
T ss_pred EEECCHHHHHH
Confidence 99999998853
No 321
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.2e-38 Score=328.58 Aligned_cols=195 Identities=28% Similarity=0.372 Sum_probs=157.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
+.++|++.+|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... .....
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 677888888853 4699999999999999999999999999999999999999999999999876421 11111
Q ss_pred EEccCCCCCcccHHHHhhcCCC-CCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 765 LVSQEPALFAVTVRENITYGAS-DKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~-~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
.....|++||+.++.. ...+. +++.++++..++.+. +++ ...+||||||||++||||+
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LSgG~~qrv~laral 157 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDL----PVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhC----ChhhCCHHHHHHHHHHHHH
Confidence 2235799999976531 01122 234455555555433 333 3457999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
+++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 47899999999999865 9999999999998865
No 322
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-38 Score=289.73 Aligned_cols=214 Identities=29% Similarity=0.489 Sum_probs=183.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc--cCCCCC----HH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE--DIRSYH----LR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~--di~~~~----~~ 757 (930)
.|+++|++|.|.. ..+|-||+|+-+.||++.+.||||+|||||++.|.=+.-|.+|+..|-|. |.++.+ ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999964 35899999999999999999999999999999999999999999999775 444443 56
Q ss_pred HhhcceEEEccCCCCCc-ccHHHHhhcCCCC--CCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 758 SLRRHVALVSQEPALFA-VTVRENITYGASD--KIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~--~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
+||+++++|+|.-.|.. -|+-||+.-.|-. ..+++ +-.+.|++..|.++-+.. +..|||||.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----------plhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----------PLHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC-----------ceecccchh
Confidence 79999999999998884 6999999644321 12332 445677788888776654 458999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
||+||||||..+|++|++||||++||++-...|.+.|+++.. |.|-++|||..+..+. +.|++.|++|+|||.|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999988899999999875 9999999999999876 99999999999999999887
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
.-+
T Consensus 228 ft~ 230 (242)
T COG4161 228 FTE 230 (242)
T ss_pred ccC
Confidence 654
No 323
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-38 Score=370.47 Aligned_cols=210 Identities=19% Similarity=0.333 Sum_probs=173.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~ 762 (930)
.|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 27999999999999999999999999999999999999999999999999876543 456789
Q ss_pred eEEEccCC---CCCc-ccHHHHhhcCCCC---------C-CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 763 VALVSQEP---ALFA-VTVRENITYGASD---------K-ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 763 i~~V~Q~p---~LF~-gTIreNl~~g~~~---------~-~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
++||||+| .+|. -|++||+.++... . .+ .+++.++++..++.. +.. ......
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~----~~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSV----NQNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCc----cCcccc
Confidence 99999984 5775 4999999875210 0 01 123445555554420 112 234568
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 48999999999998865 99999999999999
Q ss_pred ecChhH
Q 040875 903 EGSHES 908 (930)
Q Consensus 903 ~G~~~e 908 (930)
.+++.+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 987644
No 324
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=345.47 Aligned_cols=208 Identities=32% Similarity=0.468 Sum_probs=178.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 762 (930)
-++++|++.+|+ ..++|+|+||++++||.+|++|+||||||||+|.|.|.|+|++|+|++||++..-.++.+ ....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 589999999996 346999999999999999999999999999999999999999999999999998777655 5677
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCC-----CCHHHHH----HHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDK-----IDESEII----EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~-----~~d~ei~----~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
|++|.||+.|+. -||.|||-+|.... .+..++. ++++..++. ...+++|+ +||+||||.
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~----~LsiaqrQ~ 153 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVG----DLSIAQRQM 153 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhh----hCCHHHHHH
Confidence 999999999985 69999998886421 2333333 333333332 12566655 699999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
++||||+..+++|||||||||+|+.+..+.+.+.|+++. +|.++|.|||||+.+.. ||||.||.||+.+..++
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999988888889999886 69999999999999976 99999999999998776
No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.1e-38 Score=367.22 Aligned_cols=215 Identities=21% Similarity=0.324 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEEECCccCCCCCH-HHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGEDIRSYHL-RSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~idG~di~~~~~-~~lR~ 761 (930)
.|+++|++++|+..++..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999432123589999999999999999999999999999999999996 79999999999875443 56788
Q ss_pred ceEEEccCC---CCCc-ccHHHHhhcCCCC------CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 762 HVALVSQEP---ALFA-VTVRENITYGASD------KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p---~LF~-gTIreNl~~g~~~------~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
+++||||++ .+|. -|+++|+.++... ..+ .+++.++++..++.+ .-.+ .....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~----~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPF----LPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCcc----CccccCCH
Confidence 999999997 3665 5999999875310 011 123455555555421 0112 34568999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +|.|+|+|||+++.+.. ||+|++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 48999999999999975 99999999999998776
Q ss_pred hhH
Q 040875 906 HES 908 (930)
Q Consensus 906 ~~e 908 (930)
.++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-37 Score=393.10 Aligned_cols=216 Identities=19% Similarity=0.328 Sum_probs=187.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|+++ +.++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +..+.|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999642 3469999999999999999999999999999999999999999999999999975 46678899
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
|+|+||++.++. -|++||+.+... ...+ ++.+.++++.+++.++.+ .....||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 999999998886 599999975311 1112 234556788888866543 23458999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|+||+|||||++||+.+.+.+.+.|++.. +|+|||++||+++.+.. ||||++|++|+++..|++++|.+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999999999999999864 58999999999999975 99999999999999999999975
No 327
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-37 Score=341.69 Aligned_cols=187 Identities=36% Similarity=0.600 Sum_probs=160.0
Q ss_pred EEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc-cHHHHhhcCCC-CCCC----H
Q 040875 718 LVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV-TVRENITYGAS-DKID----E 791 (930)
Q Consensus 718 IVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d 791 (930)
|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++|+||++.+|.. |++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 46789999999999975 99999987632 1122 2
Q ss_pred HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 792 SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 792 ~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
+++.++++..++.++.+ ..+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35667777777755443 3456899999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcHH
Q 040875 872 V--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 872 ~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 918 (930)
+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++++ +...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~-~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE-PANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCcHH
Confidence 3 8999999999998865 999999999999999999999874 44444
No 328
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=363.92 Aligned_cols=209 Identities=21% Similarity=0.363 Sum_probs=174.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~ 762 (930)
.|+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999974 26899999999999999999999999999999999999999999999999987665 346788
Q ss_pred eEEEccCC---CCC-cccHHHHhhcCCCC---C----CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 763 VALVSQEP---ALF-AVTVRENITYGASD---K----ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 763 i~~V~Q~p---~LF-~gTIreNl~~g~~~---~----~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
++||||+| .+| .-|+++|+.++... . .+ ++++.++++.+++. +.........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 99999997 344 46999999864210 0 11 12344555555441 0112345668999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999875 48999999999999865 99999999999999999
Q ss_pred hhHHh
Q 040875 906 HESLL 910 (930)
Q Consensus 906 ~~eLl 910 (930)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 87764
No 329
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=363.71 Aligned_cols=210 Identities=22% Similarity=0.327 Sum_probs=174.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC-HHHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-LRSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~ 762 (930)
.++++|++++ .+++|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ .+..|++
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999842 3899999999999999999999999999999999999999999999999987554 3456789
Q ss_pred eEEEccCCC---CC-cccHHHHhhcCCCCC-------CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 763 VALVSQEPA---LF-AVTVRENITYGASDK-------ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 763 i~~V~Q~p~---LF-~gTIreNl~~g~~~~-------~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
++|+||+|. +| ..|+.||+.++.... .+ ++++.+.++..++.+ +-. .....+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~----~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSR----EQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCc----cCccccCCH
Confidence 999999983 55 589999998753111 01 123445555554410 112 234568999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998875 48999999999999965 99999999999999999
Q ss_pred hhHHh
Q 040875 906 HESLL 910 (930)
Q Consensus 906 ~~eLl 910 (930)
++|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88765
No 330
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=294.55 Aligned_cols=206 Identities=28% Similarity=0.464 Sum_probs=174.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
+..++++.+|++.| .++|+|+|++|.+||.|.++||||||||||++++.||.+|..|+|.+||..|+--+-+ =+
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 56788999998764 5699999999999999999999999999999999999999999999999988765543 49
Q ss_pred EEccCCCCCc-ccHHHHhhcCCC-CCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFA-VTVRENITYGAS-DKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
+|+||+-|+. -|+.||+.||.. ...+.. ...+.+..++|.++=. ...-+||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHH
Confidence 9999998886 699999999853 122332 2345566677755422 3456899999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEe--CCEEEEecChh
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLE--QGRVVEEGSHE 907 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~--~G~ive~G~~~ 907 (930)
|.-+|+.|+||||.+|||.-|.+.+|+.+-+.. .|+-+++|||+++..- -++|++||+ .|||++.=+++
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999998875 4899999999999865 599999996 58999876543
No 331
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=7e-37 Score=323.19 Aligned_cols=194 Identities=26% Similarity=0.385 Sum_probs=160.1
Q ss_pred EEcCCCCCccceeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEE
Q 040875 692 FAYPARPDVIIFKGFSINIE-----AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766 (930)
Q Consensus 692 f~Y~~~~~~~vL~~vsl~i~-----~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V 766 (930)
|+||+. ...++|++|+++ +||++||+|+||||||||+++|.|+++|++|+|.+||. +++|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 578642 347889999887 69999999999999999999999999999999999994 69999
Q ss_pred ccCCC-CCcccHHHHhhcCCCCCC-CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 767 SQEPA-LFAVTVRENITYGASDKI-DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 767 ~Q~p~-LF~gTIreNl~~g~~~~~-~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
||++. .+.+|++||+.+...... ..+...++++..++.+.. .....+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99996 578999999975432111 123345667766665433 23456899999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEE--EecChhHHh
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV--EEGSHESLL 910 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv--e~G~~~eLl 910 (930)
++||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999875 38999999999999985 9999999775544 567777754
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=359.86 Aligned_cols=201 Identities=22% Similarity=0.385 Sum_probs=167.0
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||. .+++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 35999999999999999999999999999999999999999999999983 4699
Q ss_pred EEccCCCCCc-ccHHHHhhcCCCC---------------C----------------------CCHHHHHHHHHHhcchhH
Q 040875 765 LVSQEPALFA-VTVRENITYGASD---------------K----------------------IDESEIIEAAKAANAHDF 806 (930)
Q Consensus 765 ~V~Q~p~LF~-gTIreNl~~g~~~---------------~----------------------~~d~ei~~al~~~~l~~~ 806 (930)
|+||+|.+|. -|++||+.++... . ..++++.++++..++.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999998875 4999999764210 0 001223344444444221
Q ss_pred HhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 040875 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886 (930)
Q Consensus 807 i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti 886 (930)
.. .....+||||||||++|||||+.+|++|+|||||++||+++...+.+.|++ .++|||+|||+++.+
T Consensus 148 ~~----------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~ 215 (530)
T PRK15064 148 QH----------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFL 215 (530)
T ss_pred Hh----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHH
Confidence 10 123568999999999999999999999999999999999999999999975 489999999999998
Q ss_pred hc-cCEEEEEeCCEEE-EecChhHHhc
Q 040875 887 QN-CDMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 887 ~~-~DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
.. ||+|++|++|+++ +.|++++.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 75 9999999999994 7899998874
No 333
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-37 Score=328.06 Aligned_cols=201 Identities=22% Similarity=0.291 Sum_probs=160.3
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE-----------ECCccCCCCCH
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-----------IDGEDIRSYHL 756 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~-----------idG~di~~~~~ 756 (930)
.||+++|+. ..++|+|+| .+++||++||+|+||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 468899963 235899999 5999999999999999999999999999999999996 88999877643
Q ss_pred HHhhc--ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 757 RSLRR--HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 757 ~~lR~--~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
...|. .+++++|++.++..++.+|+.........++++.++++..++.+.. ...+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 33332 4788888776665444444432111112345677777777765433 3456789999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
||||++++|++++|||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|+ |++++.
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 99999999999999999999999999999999998754 8999999999999985 99999995 667653
No 334
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.3e-37 Score=287.16 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=177.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC-CCc-----
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA-LFA----- 774 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~-LF~----- 774 (930)
.+.+.|||++++|+++||+|.||||||||++.|.|+.+|++|+|++||.++.--+.....++|-+|+|||. -|+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 47799999999999999999999999999999999999999999999999988788888899999999993 333
Q ss_pred -----ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEee
Q 040875 775 -----VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLD 849 (930)
Q Consensus 775 -----gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLD 849 (930)
+.++-|=.+.+ +.-.+++.+.|+.+||. |+--+ -.+..||-|||||+||||||+-+|+|+|-|
T Consensus 107 GqiLd~PL~l~T~~~~--~~R~~~i~~TL~~VGL~------Pdhan----~~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 107 GQILDFPLRLNTDLEP--EQRRKQIFETLRMVGLL------PDHAN----YYPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred hhHhcchhhhcccCCh--HHHHHHHHHHHHHhccC------ccccc----cchhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 22233322222 23346788899999884 44222 246789999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHh
Q 040875 850 EATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 850 EaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
||-.+||.....++.+...++. .|-.-|.|+.++-.+++ +|.|+||++|+++|+|++.+++.+.....=.+|++..
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 9999999998888888776654 48999999999999998 9999999999999999999999864444455666543
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-36 Score=359.89 Aligned_cols=210 Identities=29% Similarity=0.404 Sum_probs=167.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24599999999999999999999999999999999999999999999985 2469
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC---------------CCC----------HHHHHHHHHHhcc-------hhHHhcC
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD---------------KID----------ESEIIEAAKAANA-------HDFIAGL 810 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~---------------~~~----------d~ei~~al~~~~l-------~~~i~~L 810 (930)
+||||+|.+|.. |++||+.++... ... ..++.+.++.++. .+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999998865 999999764210 000 0111222222111 1111211
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 040875 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-C 889 (930)
Q Consensus 811 p~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~ 889 (930)
|++ .......+||||||||++|||||+.+|++|||||||++||+++...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123345689999999999999999999999999999999999999999999876 3599999999999976 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 040875 890 DMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 890 DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
|+|++|++|+++ ..|++++.++
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999987 6789888754
No 336
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=317.85 Aligned_cols=233 Identities=29% Similarity=0.433 Sum_probs=193.2
Q ss_pred cEEEEEEEEEcCCC-CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccCCCCCHH
Q 040875 684 HIELQYVHFAYPAR-PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----LKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~-~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~~~ 757 (930)
-++++|++.+|... ....++|||||+|++||++|+||+||||||--.+.++|+++- .+|+|.+||.|+-..+-.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 58999999988532 234689999999999999999999999999999999999965 379999999999999988
Q ss_pred Hhhc----ceEEEccCCCC-Cc--ccH----HHHhhcCC--CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 758 SLRR----HVALVSQEPAL-FA--VTV----RENITYGA--SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 758 ~lR~----~i~~V~Q~p~L-F~--gTI----reNl~~g~--~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
++|. +|++|+|||.- .+ -|| .|-|.+-. ....-.+++.+.|+.+|+.+--. .+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 8874 89999999951 11 133 33333211 11234567778888888865322 23467899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
||||||||+.||-||+.+|++||-||||.|||...+.+|.+.|+++.+ |..+++|||+|..++. ||||+||.+|+||
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998763 8999999999999987 9999999999999
Q ss_pred EecChhHHhccCCCcHHHHHHHHh
Q 040875 902 EEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 902 e~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
|.|+-++|+++ +...|-++.-..
T Consensus 238 E~~~t~~lF~~-PqHpYTr~Ll~a 260 (534)
T COG4172 238 ETGTTETLFAA-PQHPYTRKLLAA 260 (534)
T ss_pred ecCcHHHHhhC-CCChHHHHHHhc
Confidence 99999999984 888888765443
No 337
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.1e-36 Score=292.94 Aligned_cols=143 Identities=36% Similarity=0.573 Sum_probs=134.5
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++++|++++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 25899999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
|+|| ||+||+||++||||++++|+
T Consensus 67 ~~~~--------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 67 YFEQ--------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEcc--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
++||||||++||+++...+.+.|++. ++|+|++||+++.+.. ||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999876 5899999999999965 89999999985
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.9e-36 Score=358.73 Aligned_cols=210 Identities=30% Similarity=0.418 Sum_probs=172.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+++ +.++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 23589999999999999999999999999999999999999999999986 2479
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCCC----------------CC-C--------HHHHHHHHHHhcchh-------HHhcC
Q 040875 764 ALVSQEPALFA-VTVRENITYGASD----------------KI-D--------ESEIIEAAKAANAHD-------FIAGL 810 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~~----------------~~-~--------d~ei~~al~~~~l~~-------~i~~L 810 (930)
+||||+|.+|. -|++||+.++... .. . .+++.++++.++.++ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875210 00 1 124555666666443 22222
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 040875 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-C 889 (930)
Q Consensus 811 p~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~ 889 (930)
|++ .......+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 222 123456789999999999999999999999999999999999999999999875 4699999999999976 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 040875 890 DMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 890 DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6799988665
No 339
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.7e-36 Score=314.10 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=154.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE-ECCccCCCCCHHHhhcceEEEccCCCCCcc-cHHH
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-IDGEDIRSYHLRSLRRHVALVSQEPALFAV-TVRE 779 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~-idG~di~~~~~~~lR~~i~~V~Q~p~LF~g-TIre 779 (930)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|+|.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 887543 13467888875 9999
Q ss_pred HhhcCCC-CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHH
Q 040875 780 NITYGAS-DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 780 Nl~~g~~-~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~ 858 (930)
|+.+... ...+.++..+.+.. ...+++.+++++ ..||+|||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRV----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchH----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9976421 12344444333211 123444455544 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 859 SEKLVQEALERLMVGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 859 te~~i~~~i~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-+++.+
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 99999998876666789999999999986 599999999999999999988864
No 340
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-36 Score=356.53 Aligned_cols=210 Identities=17% Similarity=0.301 Sum_probs=173.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 762 (930)
.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+..+ +|++
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1589999999999999999999999999999999999999999999999998776654 4678
Q ss_pred eEEEccCC---CCCc-ccHHHHhhcCC----CC--CC--CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 763 VALVSQEP---ALFA-VTVRENITYGA----SD--KI--DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 763 i~~V~Q~p---~LF~-gTIreNl~~g~----~~--~~--~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
++|+||+| .+|. -|+.+|+.... .. .. .++++.++++..++.. + ........||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------N----HAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------C----CccCccccCCcHHH
Confidence 99999996 3665 49999985321 00 00 1123444555544420 1 12344568999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 908 (930)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.+ ||||++|++|+++..|++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 48999999999999976 99999999999999999988
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+..
T Consensus 490 ~~~ 492 (510)
T PRK15439 490 INV 492 (510)
T ss_pred CCH
Confidence 764
No 341
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=304.87 Aligned_cols=196 Identities=32% Similarity=0.477 Sum_probs=175.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC----CCCHHHhhcceEEEccCCCCC-cccHH
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR----SYHLRSLRRHVALVSQEPALF-AVTVR 778 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~----~~~~~~lR~~i~~V~Q~p~LF-~gTIr 778 (930)
=+++|+.+.-..+||-|+||||||||++++.|+..|++|.|.+||.-+. .+.+.--+++|+||+||.-|| +-|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 4688888887999999999999999999999999999999999998663 466677788999999999999 57999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHH
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~ 858 (930)
-||+||.. ..+.++..+++...|+....+.. +..||||||||+||+|||+.+|++|+||||.|+||..
T Consensus 95 gNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~-----------P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 95 GNLRYGMW-KSMRAQFDQLVALLGIEHLLDRY-----------PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred cchhhhhc-ccchHhHHHHHHHhCcHHHHhhC-----------CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 99999975 44567788888888887776654 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 859 SEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 859 te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
..+++.-.|+++.+ +--++.|||.++.+.. ||+|++|++|||...|.-+|.++
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999988874 5679999999999865 99999999999999999999986
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-36 Score=326.92 Aligned_cols=208 Identities=30% Similarity=0.506 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~ 762 (930)
.++++|++.+|| ...+++||||++++||..|+.|+||+|||||++.|+|+|+|++|+|++||++++=-++ +..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999997 4568999999999999999999999999999999999999999999999999986555 557889
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCC----CCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDK----IDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~----~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
|++|.|++.|+. -|+.|||.+|.+.. .+- +++.+..++.+ ||-..| +.-..||.|||||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yG-------l~vdp~----~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG-------LPVDPD----AKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhC-------CCCCcc----ceeecCCcchhHHH
Confidence 999999999996 59999999987521 122 22333333332 233333 44457999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
-|-+||+|+|+|||||||||-|-|..-+.+.+.++++. .|+|||+|||+|+.++. |||+-||.+||++..-.
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999988888888998875 59999999999999987 99999999999986544
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-37 Score=290.33 Aligned_cols=222 Identities=28% Similarity=0.450 Sum_probs=193.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++||+.+|. ..+||+|+|++|++|..++|+||||+|||||++...||.++++|+|.|||.|+.+.+-++|-++++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 68899999995 446999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCC-cccHHHHhhcCCCC----CC---CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 765 LVSQEPALF-AVTVRENITYGASD----KI---DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 765 ~V~Q~p~LF-~gTIreNl~~g~~~----~~---~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
+.-|+.++- .-||||=+.||+.. .. +..-+.+|++-.+|.+.-++ .=..||||||||--||
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-----------yLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-----------YLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-----------hHHhcccchhhhhhhh
Confidence 999998765 46999999999741 11 22346778888887654321 2237999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
-.+..+.+-++||||-.+||.+....+++.++++.+ ++|+++|-|+.+... .+|.|+-|++|+++.+|+|+|+++
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~-- 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ-- 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC--
Confidence 999999999999999999999999999999988753 899999999999986 489999999999999999999996
Q ss_pred CCcHHHHHHH
Q 040875 914 PAGAYYSLVS 923 (930)
Q Consensus 914 ~~g~y~~l~~ 923 (930)
.....++++
T Consensus 226 -~~~L~eiyd 234 (252)
T COG4604 226 -PEILSEIYD 234 (252)
T ss_pred -HHHHHHHhc
Confidence 244455443
No 344
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=353.55 Aligned_cols=211 Identities=18% Similarity=0.300 Sum_probs=170.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH-Hhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR-SLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~-~lR~~ 762 (930)
.|+++|++++| + ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++.+.+.. .+|+.
T Consensus 250 ~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999975 2 389999999999999999999999999999999999999999999999999877654 45778
Q ss_pred eEEEccCCC---CCc-ccHHHHhhcC-----CC--CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 763 VALVSQEPA---LFA-VTVRENITYG-----AS--DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 763 i~~V~Q~p~---LF~-gTIreNl~~g-----~~--~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
++|+||++. +|. .|+++|..++ .. +..+ ++++.+.++..++.+ + .......+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------P----GHRTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------C----CcccccccCCc
Confidence 999999963 555 4676663221 11 0011 122333444433310 1 12345678999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
|||||++||||++++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 58999999999999965 99999999999998887
Q ss_pred hhHH
Q 040875 906 HESL 909 (930)
Q Consensus 906 ~~eL 909 (930)
++++
T Consensus 475 ~~~~ 478 (491)
T PRK10982 475 TKTT 478 (491)
T ss_pred cccC
Confidence 6543
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=326.75 Aligned_cols=202 Identities=30% Similarity=0.378 Sum_probs=172.9
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..++++|+++.|++. .++++++||.|++|++||||||||+|||||+++|.|-..|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 469999999999643 56899999999999999999999999999999999999999999987542 26
Q ss_pred eEEEccCC-CCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 763 VALVSQEP-ALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 763 i~~V~Q~p-~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
++|.+|+- .++ +.|+-|++.-..+ ...+.++...|.+.+...-- ..++ -..||||||-|+.||+.++
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~------~~~~----v~~LSGGEk~Rl~La~ll~ 455 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGED------QEKP----VGVLSGGEKARLLLAKLLL 455 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHH------HhCc----hhhcCHhHHHHHHHHHHhc
Confidence 99999988 444 3489999976554 33478889999988875432 2233 3479999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe-cChhHHhc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE-GSHESLLA 911 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~-G~~~eLl~ 911 (930)
.+|.+|||||||..||.+|-..+.++|.+. .-|||+|||+-..+.. |++|+.+++ ++.++ |.+++-.+
T Consensus 456 ~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 456 QPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999999865 4599999999999987 999999999 88887 88888775
No 346
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-32 Score=335.57 Aligned_cols=314 Identities=27% Similarity=0.388 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHH
Q 040875 9 AWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFG 88 (930)
Q Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~ 88 (930)
..++.++...++.+.+.+...++|..+++++++++.++|+. . ++|++.|++++|++.+.+.+.......+..+..+++
T Consensus 214 ~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~ 291 (711)
T TIGR00958 214 SSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-N-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLG 291 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666788899999999999999999999999984 4 799999999999999999988877888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHH
Q 040875 89 SYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQ 168 (930)
Q Consensus 89 ~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~ 168 (930)
.+++.+.++|.++++.+..+|+...+..++.++..+..++.++..++..+.+.|+++|+++||.|++|+.+.++|++..+
T Consensus 292 ~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 371 (711)
T TIGR00958 292 LLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALE 371 (711)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHH
Confidence 88889999999999998888888888999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040875 169 GSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAG 247 (930)
Q Consensus 169 ~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~ 247 (930)
+..+...|.....+.... ...+......+..++|.+++..|.+|+|++++++..+.....|+..++.....+.+++.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~ 451 (711)
T TIGR00958 372 ETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGAS 451 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877776666555554443 3333334445566788888888999999999988888888999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 248 EHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 248 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+.++++.+++.+.... ..+.+..+.|+++||+|+||++++.++|+|+||+|++||.++||||||||||||+++|.
T Consensus 452 ~ri~~~l~~~~~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 528 (711)
T TIGR00958 452 EKVFEYLDRKPNIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528 (711)
T ss_pred HHHHHHhCCCCCCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999987654332211 12223356799999999999777778999999999999999999999999999999985
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.7e-35 Score=291.00 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=137.0
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEc
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVS 767 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~ 767 (930)
.|++++|.+ .++++|+ |++++||+++|+||||||||||+++|.|+++|++|+|.+||.+ ++++|
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 578999953 4588884 9999999999999999999999999999999999999999963 78999
Q ss_pred cCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 040875 768 QEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLL 847 (930)
Q Consensus 768 Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILi 847 (930)
|++. ||||||||++||||++++|++++
T Consensus 68 q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 68 QYID-----------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred ccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 8763 99999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe--cChhHHhc
Q 040875 848 LDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE--GSHESLLA 911 (930)
Q Consensus 848 LDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~--G~~~eLl~ 911 (930)
|||||++||+++.+.+.+.|++.. + ++|+|+|||+++.+.. ||+|++|+++-.+.. |.|..-.+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 163 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE 163 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence 999999999999999999998874 3 4899999999999985 999999998866533 66654443
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2e-34 Score=367.13 Aligned_cols=214 Identities=24% Similarity=0.406 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccC
Q 040875 684 HIELQYVHFAYPAR----------PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDI 751 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~----------~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di 751 (930)
.+.|+||++.++.. ....+|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 123699999999999999999999999999999999999864 689999999886
Q ss_pred CCCCHHHhhcceEEEccCCCCCc-ccHHHHhhcCC----CCCCCHH----HHHHHHHHhcchhHHhcCccccccccCCCC
Q 040875 752 RSYHLRSLRRHVALVSQEPALFA-VTVRENITYGA----SDKIDES----EIIEAAKAANAHDFIAGLSEGYDTWCGDRG 822 (930)
Q Consensus 752 ~~~~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~----~~~~~d~----ei~~al~~~~l~~~i~~Lp~gldt~vge~G 822 (930)
++ ..+|+.++||+|++.++. -|++|||.+.. +...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 43 456788999999987765 69999998742 1123332 36677888777543 467777544
Q ss_pred -CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh-h-hccCEEEEEeC-
Q 040875 823 -LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLST-I-QNCDMIAVLEQ- 897 (930)
Q Consensus 823 -~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~- 897 (930)
..||||||||++|||||+.+|+||+||||||+||+++...+.+.|++.. +|+|||+++|+++. + ..||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 48999999999984 4 56999999996
Q ss_pred CEEEEecChh
Q 040875 898 GRVVEEGSHE 907 (930)
Q Consensus 898 G~ive~G~~~ 907 (930)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-34 Score=285.98 Aligned_cols=155 Identities=43% Similarity=0.672 Sum_probs=145.3
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++|++++|++. ++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.....++++++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 378999999643 58999999999999999999999999999999999999999999999999988877888899999
Q ss_pred EccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 040875 766 VSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAV 845 (930)
Q Consensus 766 V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~I 845 (930)
+|| ||+||+||++||||++.+|++
T Consensus 78 ~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 78 VPQ--------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred Eee--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999 999999999999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 846 LLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 846 LiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
++|||||++||.++...+.+.|++..+ ++|++++||+++.+.. ||++++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999988654 6899999999999988 69999999875
No 350
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.6e-34 Score=340.13 Aligned_cols=192 Identities=23% Similarity=0.300 Sum_probs=165.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5999999999953 24899999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCCCC-CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 764 ALVSQEPAL-FAVTVRENITYGASDKI-DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g~~~~~-~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+|+||++.+ ++.|+++|+.++.. .. .+..+.++++..++.+..+ ....+||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 999999864 57899999987532 22 2345667888888765432 3456899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecC
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 905 (930)
+|+||||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.. ||||++|+ |++...|+
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999998743 7999999999999875 99999996 48877776
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=281.59 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=172.0
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC--CC-cc
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA--LF-AV 775 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~--LF-~g 775 (930)
.+++|+++|++|+.|+.|-|+|.||||||||++.+.|-..|++|+|.|||+|+.+++.+..-..++=|+|||- .| +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999994 33 56
Q ss_pred cHHHHhhcCCCC----CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeecc
Q 040875 776 TVRENITYGASD----KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEA 851 (930)
Q Consensus 776 TIreNl~~g~~~----~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEa 851 (930)
||.||+.+.... ..+..- ..=.+..-.+.+..+|.|++..++.+-.-|||||||-++|+-|.+..|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875421 112110 01112223345678888988888888778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 852 TSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 852 TSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
|+||||++...|++.=.+.- .+-|.++|||.++-..+ -+|.++|++|+||-+=
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999998887766543 36799999999998765 5999999999999653
No 352
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.4e-32 Score=322.37 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHH
Q 040875 10 WIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGS 89 (930)
Q Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (930)
.++.++...+....+.+...++|..+++++++.+.+|++. . ++|++++++++|++.+++.....+..++..+..+++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 144 (529)
T TIGR02868 67 AVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRR-F-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAA 144 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-C-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677788899999999999999999999984 5 8999999999999999998887777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHH
Q 040875 90 YIVGFMILWQLVVVGFPFVVLLVVLGLIYG-RILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQ 168 (930)
Q Consensus 90 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~ 168 (930)
+++.++++|.++++.+..+|++.++...+. +..++..++..+..++..+...|.++|+++||+|++|+.+.+++++..+
T Consensus 145 ~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 224 (529)
T TIGR02868 145 VAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADR 224 (529)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHH
Confidence 888899999999888877777665554444 4445566677778899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040875 169 GSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAG 247 (930)
Q Consensus 169 ~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~ 247 (930)
+..+...|.....+.... ..++......++.|+|..++..|.++.|.+.+++........|+..+...+..+.+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (529)
T TIGR02868 225 ELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAA 304 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777766555 4445555556667888888888889999988877777777788888888899999999999
Q ss_pred HHHHHHhccCCCCCCCCcc-CCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 248 EHIRDVIKRVPDIDSENME-GETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 248 ~ri~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+.++++.+++.+..... ........+.|+++||+|+||++ +++|+|+||+|++||+++||||||||||||+++|+
T Consensus 305 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 305 ERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred HHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999765443221111 11111123569999999999753 36999999999999999999999999999999986
Q ss_pred c
Q 040875 327 E 327 (930)
Q Consensus 327 ~ 327 (930)
+
T Consensus 383 g 383 (529)
T TIGR02868 383 G 383 (529)
T ss_pred c
Confidence 3
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2e-34 Score=286.26 Aligned_cols=161 Identities=24% Similarity=0.362 Sum_probs=133.4
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHH
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVR 778 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIr 778 (930)
..++|+|+||++++||+++|+||||||||||+++++ +++|++.++|.. .. ..|+++.|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 346899999999999999999999999999999985 369999998762 21 12446888887
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC--CCEEEeeccCCCCC
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN--PAVLLLDEATSALD 856 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~--~~ILiLDEaTSaLD 856 (930)
.++++..++.+. .....+.+||||||||++||||++++ |++++|||||++||
T Consensus 68 ----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 234555544221 13456779999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeC------CEEEEec
Q 040875 857 SQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQ------GRVVEEG 904 (930)
Q Consensus 857 ~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~------G~ive~G 904 (930)
+++.+.+.+.|++.. .|+|||+|||+++.+..||+|++|++ |++||+|
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 999999999998875 58999999999999988999999955 6666654
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=335.23 Aligned_cols=200 Identities=22% Similarity=0.312 Sum_probs=158.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|++ .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. +++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 358999999999999999999999999999999999999999999999852 488
Q ss_pred EEccCCCCCcccHHHHhhcCCCC-------------------------------C-CCHHHHHHHHHHhcchhHHhcCcc
Q 040875 765 LVSQEPALFAVTVRENITYGASD-------------------------------K-IDESEIIEAAKAANAHDFIAGLSE 812 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~-------------------------------~-~~d~ei~~al~~~~l~~~i~~Lp~ 812 (930)
|++|++..+..|+.+++.-+... . ..++++.++++..+
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg---------- 137 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG---------- 137 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC----------
Confidence 88887655555665554211000 0 00112222233322
Q ss_pred ccc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cC
Q 040875 813 GYD-TWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CD 890 (930)
Q Consensus 813 gld-t~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~D 890 (930)
++ ........+||||||||++|||||+.+|++|||||||++||+++...+.+.|++. +.|||+|||+.+.+.. ||
T Consensus 138 -l~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d 214 (638)
T PRK10636 138 -FSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVD 214 (638)
T ss_pred -CCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcC
Confidence 22 1123345689999999999999999999999999999999999999999998875 5799999999999975 99
Q ss_pred EEEEEeCCEEEE-ecChhHHhc
Q 040875 891 MIAVLEQGRVVE-EGSHESLLA 911 (930)
Q Consensus 891 rI~vl~~G~ive-~G~~~eLl~ 911 (930)
+|++|++|++++ .|+++....
T Consensus 215 ~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 215 KIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEEeCCEEEEecCCHHHHHH
Confidence 999999999975 578776654
No 355
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.8e-31 Score=312.52 Aligned_cols=315 Identities=23% Similarity=0.362 Sum_probs=276.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHH
Q 040875 7 CIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIF 86 (930)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~ 86 (930)
+..++..+++.....+++.|+...+-..+++++++.+++||.. . ++|+++++++ |.+.|++.+.......+..+.++
T Consensus 205 l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~ 281 (709)
T COG2274 205 LFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-R-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFA 281 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-C-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555566666788899999999999999999999999994 5 8999999987 79999999988777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHH
Q 040875 87 FGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSA 166 (930)
Q Consensus 87 ~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~ 166 (930)
++-+++.++++|.++++.++.+|+++.+..++.+.+++..++.++...++.+..-|.++||++||..+.|..+..++++.
T Consensus 282 ~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~ 361 (709)
T COG2274 282 LIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR 361 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040875 167 LQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAAS 245 (930)
Q Consensus 167 r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~ 245 (930)
-.+..+...|.......... ..++.-.....+.|+|..++..+.+|.|..+++..+......|+..+......+.+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~ 441 (709)
T COG2274 362 LAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKV 441 (709)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999888887766655 45566666677889999999999999999988888887888899999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 246 AGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 246 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.+|+.++++.++|.+.... ...++..+|.|+|+|++|+|+.++ +++|+|+||+|++||++||||+||||||||++++
T Consensus 442 ~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 442 ALERLGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred HHHHHHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999998766443221 234456678999999999997653 4799999999999999999999999999999998
Q ss_pred c
Q 040875 326 L 326 (930)
Q Consensus 326 l 326 (930)
.
T Consensus 520 ~ 520 (709)
T COG2274 520 L 520 (709)
T ss_pred h
Confidence 5
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-33 Score=359.97 Aligned_cols=203 Identities=24% Similarity=0.275 Sum_probs=170.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc----CCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY----DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA- 774 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~----~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~- 774 (930)
.++|+|+|+++++||.++|+||||||||||+++|.|.. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 578999999999986654 456788999999998776
Q ss_pred ccHHHHhhcCCC----C----CCCHHHH-----HHHHHHhcchhHHhcCccccccccCC-CCCCCChHHHHHHHHHHHhc
Q 040875 775 VTVRENITYGAS----D----KIDESEI-----IEAAKAANAHDFIAGLSEGYDTWCGD-RGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 775 gTIreNl~~g~~----~----~~~d~ei-----~~al~~~~l~~~i~~Lp~gldt~vge-~G~~LSgGQrQrlaLARALl 840 (930)
-|++||+.+... . ..++++. .++++..+| .+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 599999987421 0 1233332 234555554 3346788875 46789999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCc-hhhh-ccCEEEEEeCCEEEEecChhHHh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRL-STIQ-NCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl-~ti~-~~DrI~vl~~G~ive~G~~~eLl 910 (930)
.+|+|++||||||+||+.+...+.+.|++.. .|+|+|+++|++ +.+. .+|+|++|++|+++.+|+++++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999999975 389999999997 4554 59999999999999999998883
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=270.70 Aligned_cols=216 Identities=27% Similarity=0.401 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCCcEEEECCccCCCCCHHHh-h
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGEDIRSYHLRSL-R 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R 760 (930)
-++++|++.+-.++ +.+|++|||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||+||.+++.++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999988532 3699999999999999999999999999999999998 58899999999999999998775 7
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCCCC-----C---CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGASD-----K---IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~~~-----~---~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
..|.+-+|.|.=+.| |+++=|...... . ...+++.++++..++++.. ++-.|.+ .||||||.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN~---GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVNE---GFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccCC---CcCcchHH
Confidence 889999999988877 566555432110 0 1246788888888887732 2344444 69999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhcc--CEEEEEeCCEEEEecChhH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNC--DMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~--DrI~vl~~G~ive~G~~~e 908 (930)
|.-|+-+++-+|++.|||||-|+||.++-+.|.+.|.+.. +|+++++|||.-..+.+. |++-||-+|+||..|.| |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999999887 499999999999988764 99999999999999999 7
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 764
No 358
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-33 Score=276.99 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=173.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRR 761 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~ 761 (930)
.-|+++||+++|.+ +++|+|||++|+|||.-+|+|+||||||||++++.+.++|++|.+.+-|+...+-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 45999999999964 469999999999999999999999999999999999999999999999999998888 99999
Q ss_pred ceEEEccCC---CCCcccHHHHhhcCC------CC-CCCHHHH---HHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 762 HVALVSQEP---ALFAVTVRENITYGA------SD-KIDESEI---IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 762 ~i~~V~Q~p---~LF~gTIreNl~~g~------~~-~~~d~ei---~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
+||+|+-+- +.=+.++||=+.=|- .. ..++++. ...++.+++.+..+ ..=..||.|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-----------r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-----------RPFGSLSQG 175 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-----------CchhhcCHh
Confidence 999998533 222455665553221 11 4555544 34566666654322 223479999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC---CCeEEEEccCchhhhc-cCEEEEEeCCEEEEec
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV---GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEG 904 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 904 (930)
||||+-|||||+++|++|||||||++||......+.+.+.+... +.|+|+|||+.+.+.. .++++.+++|+++..|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999888888888753 6789999999999977 5999999999999877
Q ss_pred C
Q 040875 905 S 905 (930)
Q Consensus 905 ~ 905 (930)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 3
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=252.62 Aligned_cols=189 Identities=23% Similarity=0.359 Sum_probs=162.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCCCHHHhh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~lR 760 (930)
.+.++||+.+-|++ ..|-|+|++|.+||++-+.||||||||||+.-+.|.+.++ +|++++|++++..++.+ |
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 46789999888643 5789999999999999999999999999999999999885 89999999999988765 5
Q ss_pred cceEEEccCCCCCc-ccHHHHhhcCCCCC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 761 RHVALVSQEPALFA-VTVRENITYGASDK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~-gTIreNl~~g~~~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++++.+|||.||. -+|-+||.|..|.. .-......||++.+|.++..+- +.+||||||-|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----------P~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----------PATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcC-----------hhhcCcchHHHHHH
Confidence 79999999999995 69999999876532 2233456788899988887754 45899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN 888 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~ 888 (930)
-|+|+..||.|+||||.|.||..-.....+.+-... .|--++.|||+++-+..
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpa 200 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA 200 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC
Confidence 999999999999999999999988887777764432 48899999999988773
No 360
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-30 Score=311.05 Aligned_cols=311 Identities=15% Similarity=0.126 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.+++.......+.+...++|..+++++++++.+|++. . ++|++.|++++|++.+++.+...+...+..+..+++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK11174 78 LLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-K-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLIL 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-C-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666788999999999999999999999984 5 89999999999999999998777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++.+|+++.+..++.++..+..++.++..++..+.+.|.++|+++||.|+||+.+.+++++.-++.
T Consensus 156 ~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 235 (588)
T PRK11174 156 IAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDF 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHH
Confidence 88899999999999988888888888899999999999999999999999999999999999999999999997766665
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHhcccCCcchH---HH------HHHHHHHHHHHHhhhhHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIW-SFLAYYGSRLVMYHGAKGGAV---FA------AGTTIVVGGQALGAGLSNFKY 239 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v---ft------~~~~~~~~~~~l~~~~~~~~~ 239 (930)
.+...+.....+.... ..++..... .++.++|+.+ .+.+|.|.. ++ ++.+......|+..+...+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~ 313 (588)
T PRK11174 236 RQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY--LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHA 313 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5554444444333333 222222222 2223334333 256666643 22 222233345788888888899
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCc
Q 040875 240 ISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKS 319 (930)
Q Consensus 240 ~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKS 319 (930)
+.++++|++|+.++++.+++.+... ....+....+.|+++||+|.|++ +.++|+|+||+|++||++|||||||||||
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999997654321111 11111112346999999998863 35799999999999999999999999999
Q ss_pred ccccccccc
Q 040875 320 TVVSASLED 328 (930)
Q Consensus 320 Tll~~ll~~ 328 (930)
||+++|++.
T Consensus 391 TL~~lL~g~ 399 (588)
T PRK11174 391 SLLNALLGF 399 (588)
T ss_pred HHHHHHhcC
Confidence 999998643
No 361
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.9e-30 Score=317.78 Aligned_cols=313 Identities=21% Similarity=0.247 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.++........+.++..++|..+++++++.+.++++. . ++|+++++++.| +.+++.+.......+..+..+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 285 (710)
T TIGR03796 209 VLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-R-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYA 285 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566788999999999999999999999884 5 899999999988 6899988777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++.+|+.+.+..++.+...+..++.++..+++.+...|.++|+++||++++|+.+.+++.+...+.
T Consensus 286 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~ 365 (710)
T TIGR03796 286 LLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKL 365 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+.... ..++......+.+|+|.+++..|.+|.|.++++..++.....|+..+...+..+.+++++.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~r 445 (710)
T TIGR03796 366 LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777766665554 444445555667788999988999999999988888888888999999999999999999999
Q ss_pred HHHHhccCCCCCCCCc---c-CCcc-cCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccc
Q 040875 250 IRDVIKRVPDIDSENM---E-GETL-EKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSA 324 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ 324 (930)
+.++++.+++.+.... . ...+ +...+.|+++|++|+||+. ++++|+|+||+|++||.++||||||||||||+++
T Consensus 446 i~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlkl 524 (710)
T TIGR03796 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKL 524 (710)
T ss_pred HHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999976544322110 0 0111 2234689999999999853 4679999999999999999999999999999999
Q ss_pred ccc
Q 040875 325 SLE 327 (930)
Q Consensus 325 ll~ 327 (930)
|++
T Consensus 525 L~g 527 (710)
T TIGR03796 525 VAG 527 (710)
T ss_pred Hhc
Confidence 863
No 362
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-32 Score=329.25 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=157.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. . .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EE
Confidence 3899999999964 35999999999999999999999999999999999999999999999873 1 26
Q ss_pred EEEccCCCC-CcccHHHHhhcCCC-----------------CCCCHHHHHHH------HH-------HhcchhHHhcCcc
Q 040875 764 ALVSQEPAL-FAVTVRENITYGAS-----------------DKIDESEIIEA------AK-------AANAHDFIAGLSE 812 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g~~-----------------~~~~d~ei~~a------l~-------~~~l~~~i~~Lp~ 812 (930)
++++|+|.. ..+++.+++..+.. ....++.+... ++ ...+.+.+..+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 778887632 23566665432110 00000000000 00 00111222222
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCE
Q 040875 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDM 891 (930)
Q Consensus 813 gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~Dr 891 (930)
|++ .......||||||||++|||||+.+|+||||||||++||+++...+.+.|++. +.|||+|||+.+.+.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 221 12345689999999999999999999999999999999999999999999876 3699999999999976 999
Q ss_pred EEEEeCCEEEE-ecChhHHhc
Q 040875 892 IAVLEQGRVVE-EGSHESLLA 911 (930)
Q Consensus 892 I~vl~~G~ive-~G~~~eLl~ 911 (930)
|++|++|+++. .|++++.++
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999986 488887664
No 363
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.8e-30 Score=307.44 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 040875 14 FLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVG 93 (930)
Q Consensus 14 ~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (930)
++........+.+...++|..+++++++++.++++. . ++|++.+++++|++.+.......+..++..+..+++.+++.
T Consensus 54 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (569)
T PRK10789 54 YVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLR-H-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVM 131 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-C-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455678899999999999999999999984 5 79999999999999998776655555665555545444444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHH
Q 040875 94 -FMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVK 172 (930)
Q Consensus 94 -~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~ 172 (930)
++++|.++++.+.++|++..+...+.+.+.+..++..+..++..+.+.|.++|+++||.|++|+.+.++|.+..++..+
T Consensus 132 ~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~ 211 (569)
T PRK10789 132 STQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGK 211 (569)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5789999999988889888888888898888888888888899999999999999999999999999999988777766
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 040875 173 LGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIR 251 (930)
Q Consensus 173 ~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~ 251 (930)
...+.....+.... ...+......+++++|.+++..|.+|.|.++++..+......|+..++..+..+..+++|.+|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~ 291 (569)
T PRK10789 212 KNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIR 291 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655444 33344444556677888888889999999988888888888899999999999999999999999
Q ss_pred HHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 252 DVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++++.+++.+... ...+...+.|+++|++|+|+.. +.++|+|+||++++|+.++|+||||||||||+++|.+
T Consensus 292 ~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 292 AMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred HHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9997654322111 1112234579999999999743 4579999999999999999999999999999999863
No 364
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.8e-30 Score=315.12 Aligned_cols=310 Identities=21% Similarity=0.273 Sum_probs=259.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.+++..+....+.++..++|..+++++++.+.++ + +. ++|++++++ +|++.+++.+.......+..+..+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~-~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 277 (694)
T TIGR03375 202 VLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R-PA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFL 277 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C-CC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444555555667788999999999999999999987 5 34 899999999 7999999988766555566666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++.+|+++++..++.+...+..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++.
T Consensus 278 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 357 (694)
T TIGR03375 278 LVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAAL 357 (694)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+.... ..++......++.|+|..++..|.+|.|.++.+..++.....|+..+...+..+..++++.+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~r 437 (694)
T TIGR03375 358 ARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777766555 444444555667788999888999999999988888888889999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++++.+++.+... .....+...+.|+++|++|+||.. +.++|+|+||+|++||.++||||||||||||+++|.
T Consensus 438 i~~il~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 438 LDELMQLPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred HHHHHcCCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 999998755422211 111112234679999999999743 457999999999999999999999999999999985
No 365
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.1e-33 Score=329.39 Aligned_cols=193 Identities=24% Similarity=0.345 Sum_probs=159.8
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE-----------ECCccCCCCCH
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK-----------IDGEDIRSYHL 756 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~-----------idG~di~~~~~ 756 (930)
++++.+|.. +..+|+|++ ++++||++||+||||||||||+++|.|+++|++|+|. ++|.|+.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348899953 335899999 9999999999999999999999999999999999998 99998865432
Q ss_pred H--Hhhcc----eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 R--SLRRH----VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~--~lR~~----i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
. ..+.+ +.+++|.|.+|.+|++||+... + ..+++.++++..++.+.. | ....+||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~----~~~~~LSgGe~ 218 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------D----RDISELSGGEL 218 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------c----CChhhCCHHHH
Confidence 1 11223 4455567778899999999642 1 235677888888775432 2 33457999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
||++|||||+++|++|+||||||+||+++...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999987669999999999999976 9999999873
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.6e-33 Score=353.32 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=167.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-c
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-V 775 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-g 775 (930)
..+|+|+|++|+|||.++|+||||||||||+++|.|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|. -
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35899999999999999999999999999999999999998 999999999987654 3788999999987775 6
Q ss_pred cHHHHhhcCCC----C-------CCCH----------HHHH---HHHHHhc------chhHHh--cCccccccccCCC-C
Q 040875 776 TVRENITYGAS----D-------KIDE----------SEII---EAAKAAN------AHDFIA--GLSEGYDTWCGDR-G 822 (930)
Q Consensus 776 TIreNl~~g~~----~-------~~~d----------~ei~---~al~~~~------l~~~i~--~Lp~gldt~vge~-G 822 (930)
|++|||.|... + +.+. +++. ++....+ .++.++ +|++-.||.||+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 0 0011 1111 0100000 111222 3444568888764 4
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCch--hhhccCEEEEEeCC
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLS--TIQNCDMIAVLEQG 898 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~--ti~~~DrI~vl~~G 898 (930)
..||||||||++|||||+.+|++|+|||||++||+.+...+.+.|++.. .|+|+|+++|+++ ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999875 3899999999973 34569999999999
Q ss_pred EEEEecChhHHh
Q 040875 899 RVVEEGSHESLL 910 (930)
Q Consensus 899 ~ive~G~~~eLl 910 (930)
+++.+|++++++
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
No 367
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3e-30 Score=315.54 Aligned_cols=311 Identities=16% Similarity=0.229 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.++...+....+.+...++|..+++++++.+.++++. . ++|+++++++ |++.+++.+.......+..+..+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 287 (708)
T TIGR01193 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-R-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVG 287 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555677788999999999999999999999984 4 8999999998 999999987766555666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++++|+++.+..++.+...+..++.++..++..+...|.++|+++||.|++|+.+.+++.+...+.
T Consensus 288 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 367 (708)
T TIGR01193 288 LFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDY 367 (708)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77888999999999999999988999999999999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+.... ..++......++.|+|..++..|.+|.|.++++..++.....|+..+...+..+.+++++.+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 447 (708)
T TIGR01193 368 LNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNR 447 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666665555444 333444455667788999999999999999988888888888999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+.++++.+++.+.... .....+..+.|+++|++|+|++ ++++|+|+||+|++||.++||||||||||||+++|.+
T Consensus 448 i~~~l~~~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 448 LNEVYLVDSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred HHHHHcCCCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999976554332211 0112233468999999999973 3579999999999999999999999999999999853
No 368
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.8e-30 Score=305.49 Aligned_cols=314 Identities=15% Similarity=0.175 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHH
Q 040875 8 IAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFF 87 (930)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~ 87 (930)
+..++.+++..+....+++...++|..+++++++.+.++++. . ++|++++++++|++.+++.....+..++..+..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~ 149 (574)
T PRK11160 72 GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-Y-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVIL 149 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666677788999999999999999999999984 5 79999999999999999998877777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHH
Q 040875 88 GSYIVGFMILWQLVVVGFPFVVLLVVL-GLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSA 166 (930)
Q Consensus 88 ~~~~~~~~~~w~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~ 166 (930)
+.+++.++++|.++++.+..+|++.++ ..++.+...+..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++.
T Consensus 150 ~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~ 229 (574)
T PRK11160 150 VLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQT 229 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHH
Confidence 888889999999998887777766553 4667777888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH
Q 040875 167 LQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVV-GGQALGAGLSNFKYISEAA 244 (930)
Q Consensus 167 r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~-~~~~l~~~~~~~~~~~~a~ 244 (930)
.++..+...|.....+.... ..++......+++|+|..++ .+.++.|..++++..... ...++..+...+..+.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (574)
T PRK11160 230 EQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777666555 44445555566677887774 677888887665444333 2346666777788999999
Q ss_pred HHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccc
Q 040875 245 SAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSA 324 (930)
Q Consensus 245 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ 324 (930)
+|++|+.++++.+++.+..... .+....+.|+++|++|+||+. +.++|+|+||++++||.++||||||||||||+++
T Consensus 309 ~s~~ri~~ll~~~~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 309 ASARRINEITEQKPEVTFPTTS--TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred HHHHHHHHHHhCCCCCCCCccc--CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999875543221111 111234679999999999753 3479999999999999999999999999999999
Q ss_pred ccc
Q 040875 325 SLE 327 (930)
Q Consensus 325 ll~ 327 (930)
|.+
T Consensus 386 l~g 388 (574)
T PRK11160 386 LTR 388 (574)
T ss_pred Hhc
Confidence 863
No 369
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4e-30 Score=313.42 Aligned_cols=311 Identities=20% Similarity=0.254 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHH
Q 040875 10 WIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGS 89 (930)
Q Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (930)
+++.+++.......+.+...++|..+++++++.+.++|+. . ++|+++++++ |++.+++.+.......+..+..++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 266 (686)
T TIGR03797 190 AAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-Y-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLN 266 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666788999999999999999999999984 5 8999999997 89999998776555555566666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHH
Q 040875 90 YIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQG 169 (930)
Q Consensus 90 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~ 169 (930)
+++.++++|.++++.++++|+.+++..++.+.+.+..++.++..+++.+...|.++|+++||.++.|+.+.+++.+..++
T Consensus 267 ~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 346 (686)
T TIGR03797 267 LGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSR 346 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHH
Confidence 77788999999999999999998899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040875 170 SVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGE 248 (930)
Q Consensus 170 e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 248 (930)
..+...|.....+.... ..++......+.+|+|.+++..|.+|.|.++++..++.....|+..+...+..+.+++++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 426 (686)
T TIGR03797 347 QRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWE 426 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777776665555 34444555666778898888899999999998888888888999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 249 HIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 249 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+.++++.+++.+... ..+....+.|+++||+|+|+.. ++++|+|+||+|++||.+|||||||||||||+++|++
T Consensus 427 ri~~~l~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 427 RAKPILEALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred HHHHHhcCCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 9999997654432111 1122334679999999999743 4679999999999999999999999999999999863
No 370
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.2e-30 Score=302.49 Aligned_cols=314 Identities=16% Similarity=0.175 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHH
Q 040875 7 CIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIF 86 (930)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~ 86 (930)
++..++.+++.......+.+...++|..+++++++++.++++. . ++|+++|.+++|++.+++.+.......+..+..+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~ 132 (529)
T TIGR02857 55 LLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQG-R-PSGELATLALEGVEALDGYFARYLPQLVLAVIIP 132 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcc-C-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666677788999999999999999999999984 5 8999999999999999998876666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHH
Q 040875 87 FGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSA 166 (930)
Q Consensus 87 ~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~ 166 (930)
+..+++.++++|.++++.++.+|++..+..++.++..+..++..+..++..+.+.|.++|+++||.|++|+.+.++|++.
T Consensus 133 ~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~ 212 (529)
T TIGR02857 133 LAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARS 212 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHH
Confidence 77778888899988888888887776667778888888888889999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040875 167 LQGSVKLGLKQGLCKGFASG-INAITYAIWSF-LAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAA 244 (930)
Q Consensus 167 r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (930)
.++..+...+.....+.... ..++......+ .+|.|+. +..|.+|.|.++.+.........|+..+...+..+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 291 (529)
T TIGR02857 213 SEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFR-LLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGV 291 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666655554444443322 22222222222 2344443 447789999988877777778888988889999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccc
Q 040875 245 SAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSA 324 (930)
Q Consensus 245 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ 324 (930)
.+.+|+.++++.+++.+. .. ..+....+.|+++|++|+||++ ++++|+|+||+|++||.++||||||||||||+++
T Consensus 292 ~~~~ri~~ll~~~~~~~~-~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~l 367 (529)
T TIGR02857 292 AAAEALFAVLDAPRPLAG-KA--PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNL 367 (529)
T ss_pred HHHHHHHHHhCCCcccCC-Cc--CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999974322111 11 1111112479999999999854 3579999999999999999999999999999999
Q ss_pred ccc
Q 040875 325 SLE 327 (930)
Q Consensus 325 ll~ 327 (930)
|.+
T Consensus 368 l~g 370 (529)
T TIGR02857 368 LLG 370 (529)
T ss_pred Hhc
Confidence 853
No 371
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=259.91 Aligned_cols=214 Identities=26% Similarity=0.400 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC-ccCCCCCHHHh-hc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG-EDIRSYHLRSL-RR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG-~di~~~~~~~l-R~ 761 (930)
.++++||+.++++ -.+|+|+||++.|||.-.|+||||+||||++..+.|-.+|++|++++|| .|+++++-+.. |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 5899999999963 3589999999999999999999999999999999999999999999999 99999998775 67
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCCh
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASD-------------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSG 827 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~-------------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSg 827 (930)
.|+==+|.|..|. -||+||+.+.... ....+++.++|...+|.+... .-...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 7999999998885 5999999754211 112246888888888876543 22458999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecCh
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 906 (930)
||||++-|+--+..+|++|+||||++++-.+.....-+.++++.+.+++++|-|++.+++. +|+|-||.+|.|...|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999554444677888888889999999999999986 999999999999999999
Q ss_pred hHHhc
Q 040875 907 ESLLA 911 (930)
Q Consensus 907 ~eLl~ 911 (930)
+|+-+
T Consensus 231 d~v~~ 235 (249)
T COG4674 231 DEVQN 235 (249)
T ss_pred HHhhc
Confidence 99976
No 372
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.98 E-value=1.3e-29 Score=303.86 Aligned_cols=314 Identities=24% Similarity=0.354 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 040875 12 AAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYI 91 (930)
Q Consensus 12 ~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (930)
..+++......++.+...++|..+++++++.+.++++. . +.|++.+++++|++.+.+.+.......+..+..+++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 151 (576)
T TIGR02204 74 GTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-N-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLI 151 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556778999999999999999999998884 4 789999999999999999877666666777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHH
Q 040875 92 VGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSV 171 (930)
Q Consensus 92 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~ 171 (930)
+.+.+.|.++++.++.+|+.+.+..++.+.+.+..++.++..++..+...|.++|+++||.|++|+.+.+++.+..++..
T Consensus 152 ~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 231 (576)
T TIGR02204 152 MMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAY 231 (576)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHH
Confidence 88888998888888888877777778899999999999999999999999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 040875 172 KLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHI 250 (930)
Q Consensus 172 ~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri 250 (930)
+...+.....+.... ..++...+..+.+++|..++..+.+|.|.++++..++.....|+..++..+..+.+++.+.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri 311 (576)
T TIGR02204 232 EAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL 311 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555444333 3333444455566778888888899999998888888888889999999999999999999999
Q ss_pred HHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 251 RDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.++++.+++.+........+....+.|+++|++|+||.+++.++|+|+||+++|||.++|+||||||||||+++|++
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 312 IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred HHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 99997654322211111111122356999999999986544679999999999999999999999999999999864
No 373
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.98 E-value=1.8e-29 Score=302.47 Aligned_cols=311 Identities=22% Similarity=0.334 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
+..++........+.+...++|..+++++++.+.++++. . ++|++.+++++|++.+++.........+..+..+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~ 146 (571)
T TIGR02203 69 ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-Q-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF 146 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666778899999999999999999988884 4 89999999999999999988877778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++.+|+++.+..++.++..+..++..+..++..+...|.++|+++||.+++|+.+.+++++..++.
T Consensus 147 ~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 226 (571)
T TIGR02203 147 IVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRN 226 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...+.....+...+ ..++......+..++|..++..|.+|+|.++++..++.....|+..+...+..+.+++++.+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 306 (571)
T TIGR02203 227 RRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAES 306 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777666666555 445555566677788888888899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+.++++.+++.+... ...+...+.|+++|++|+|+++ +.++|+|+||+|++||.++|+||||||||||+++|.+
T Consensus 307 i~~~l~~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 307 LFTLLDSPPEKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred HHHHHcCCCCCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 999997654432211 1112234579999999999754 4579999999999999999999999999999999853
No 374
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=4e-32 Score=267.52 Aligned_cols=210 Identities=24% Similarity=0.443 Sum_probs=178.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.+++++|+-+|. +..|++|+||+++|||..|++|+|||||||.+++++|+.+|++|+|.+||.+++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 378999999995 4468999999999999999999999999999999999999999999999998864 456789
Q ss_pred EEEccCCCCCc-ccHHHHhhcCCC-CCCCHHHHH----HHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFA-VTVRENITYGAS-DKIDESEII----EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~-gTIreNl~~g~~-~~~~d~ei~----~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|.|-|--|+. -|+.|-|.|... ...+..|+. .-|++.++.+ +. ...-..||-|-.|.|-+--
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~--------~~---~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG--------KK---TKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc--------cc---cchHHHhhhhhhHHHHHHH
Confidence 99999999985 699999987532 123444443 3344433321 11 1344689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|++.+|+++|||||.|+|||-+.+.+.+.|.+.. +|.|||+-+||++-+.. ||+++.|++|+.|-+|+-++..+
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999999999999999999998876 59999999999999976 99999999999999999888764
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=3.3e-31 Score=264.73 Aligned_cols=190 Identities=32% Similarity=0.460 Sum_probs=157.1
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
.++|+||||++++||++||||+||||||||+++|.|.|+|++|+|.++|.--.-+.+ ..++ +| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf---~p---elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGF---DP---ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCC---Cc---ccchHH
Confidence 368999999999999999999999999999999999999999999999952211111 1222 23 348899
Q ss_pred Hhhc-----CCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCC
Q 040875 780 NITY-----GASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSA 854 (930)
Q Consensus 780 Nl~~-----g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSa 854 (930)
||.+ |...+.-|+.+.+..+-++|.||++ .| -.+.|-|.+-||+.|-|.-.+|+|||+||..|.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~P----vktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QP----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cc----hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 9965 2222233455667777888888874 33 358999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-cCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 855 LDSQSEKLVQEALERL-MVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 855 LD~~te~~i~~~i~~~-~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
-|+.=.++=++.+++. .+++|+|+|+|+++.|++ |||+++|++|+|+..|+|+|..+
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9998777666777777 578999999999999986 99999999999999999999986
No 376
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2.9e-32 Score=263.21 Aligned_cols=136 Identities=43% Similarity=0.655 Sum_probs=126.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCccc-HHHHh
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVT-VRENI 781 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gT-IreNl 781 (930)
|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++++++||++.+|.+. +++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999876 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC
Q 040875 782 TYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS 853 (930)
Q Consensus 782 ~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS 853 (930)
..+++++++++.+++.+ ..++.++.++..||+|||||++|||||+++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24677889999988765 35677778889999999999999999999999999999997
No 377
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=9.4e-32 Score=322.14 Aligned_cols=222 Identities=23% Similarity=0.287 Sum_probs=163.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc---CCCCcEEEECCccCCC--CCH-
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY---DPLKGVVKIDGEDIRS--YHL- 756 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~---~~~~G~I~idG~di~~--~~~- 756 (930)
..|+++|++++|++ .++|+|+||+|++||++|||||||||||||+++|.|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 36999999999963 34899999999999999999999999999999999864 5789999865544311 111
Q ss_pred -----------HHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCH----HHHHHHHHHhcchh----------HHhcCc
Q 040875 757 -----------RSLRRHVALVSQEPALFAVTVRENITYGASDKIDE----SEIIEAAKAANAHD----------FIAGLS 811 (930)
Q Consensus 757 -----------~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d----~ei~~al~~~~l~~----------~i~~Lp 811 (930)
..+++.+++++|+|.+...+..+|.........++ +++.++++..++.+ .+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12356689999998765445555542210001111 23444444443321 11111
Q ss_pred cccccc-cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-c
Q 040875 812 EGYDTW-CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-C 889 (930)
Q Consensus 812 ~gldt~-vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~ 889 (930)
|++.. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 22211 12234689999999999999999999999999999999999999999999876 7899999999999976 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 040875 890 DMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 890 DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
|+|++|++|+++ ..|++++..+
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999997 4677765543
No 378
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=3.7e-29 Score=305.08 Aligned_cols=313 Identities=19% Similarity=0.244 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHH
Q 040875 9 AWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFG 88 (930)
Q Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~ 88 (930)
.+++.+++.......+.++..++|..+++++++.+.++++. . ++|++.+++ +|++.+++.+.......+..+...++
T Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~ 268 (694)
T TIGR01846 192 EPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-R-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVV 268 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-C-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677889999999999999999999999984 5 899999999 69999999876554444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHH
Q 040875 89 SYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQ 168 (930)
Q Consensus 89 ~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~ 168 (930)
.+++.++++|.++++.+..+|+++.+..++.+.+++..++..+..+++.+.+.|.++|+++||.++.|+.+.+++.+..+
T Consensus 269 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~ 348 (694)
T TIGR01846 269 FLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLA 348 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHH
Confidence 56778889999999999889998888888999999988899999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040875 169 GSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAG 247 (930)
Q Consensus 169 ~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~ 247 (930)
+..+...|.....+.... ..++......+..|+|..++..|.+|.|.++.+..+......|+..+......+.+++.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 428 (694)
T TIGR01846 349 AYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIAL 428 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777776666555 4445555566678889999889999999998888888888889999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 248 EHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 248 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+|+.++++.+++.+.. .....+...+.|+++|++|+|+.. ++++|+|+||+|++||.++||||||||||||+++|.+
T Consensus 429 ~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g 505 (694)
T TIGR01846 429 ERLGDILNSPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR 505 (694)
T ss_pred HHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999999765443221 111122334679999999999743 3569999999999999999999999999999999854
No 379
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.97 E-value=5e-29 Score=299.02 Aligned_cols=311 Identities=22% Similarity=0.355 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.++...+....+.+....+|..+++++++.+.++++. . ++|++.+.+++|++.+.+.........+..+..+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (582)
T PRK11176 80 ITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 157 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556677888999999999999999998884 5 89999999999999999988777777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++++|+.+.+..++.+.+.+..++.++..++..+...|.++|+++||+|++|+.+.+++++..++-
T Consensus 158 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 237 (582)
T PRK11176 158 IMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRM 237 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 88889999999988888888888888999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+.... ..++.......+.++|..++..|.+++|.+..++..+.....|+..+...+..+..++.+.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~r 317 (582)
T PRK11176 238 RQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666555444 334444455556677777777889999998877777777888999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+.++++.+++.+... ...+...+.|+++|++|+||+. +.++|+|+||+|++||.++||||||||||||+++|++
T Consensus 318 i~~~~~~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 318 LFAILDLEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred HHHHhcCCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 999987543322111 1112223569999999999753 4679999999999999999999999999999999864
No 380
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-28 Score=265.04 Aligned_cols=451 Identities=18% Similarity=0.233 Sum_probs=285.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHH---HHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 040875 418 LTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAIC---SRLAKDANVVRSLVGDRVALLVQTLSSIT 494 (930)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~---~rls~D~~~i~~~~~~~~~~~~~~~~~~~ 494 (930)
+.+..-.|+-.+.+..+..++-.-.++..+... .||.- .+.-|++- |++++|+....+........+...++-++
T Consensus 172 FvNS~Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~V-sn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 172 FVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKV-SNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEE-ecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333333444455556666666666666555544 55542 34445544 47889998888777777777666655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhchHHHHHhccHHHHH
Q 040875 495 IAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKV-------IKAQDESSKLAAEAVSNLRTITAFSSQERIL 567 (930)
Q Consensus 495 ~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~ 567 (930)
..-....-.... +......+..+.++.....++..+.+. ..........=+..+.+-+.|..|+..+...
T Consensus 250 l~s~~L~~s~~s---~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~ 326 (728)
T KOG0064|consen 250 LISFTLLDSATS---VGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVEL 326 (728)
T ss_pred HHHHHHHhhhcc---ccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHH
Confidence 222211111111 111111122223333333443333222 2222223334466788899999999998888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhCccC--------HHHHHHH
Q 040875 568 KMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLV------------ARGYIN--------AKSLFEI 627 (930)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~------------~~g~~~--------~g~~~~~ 627 (930)
++.++..+..............+...+-++++-- .|-|.-++ ..+... ...+...
T Consensus 327 ~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKY-----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~ 401 (728)
T KOG0064|consen 327 TQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKY-----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITN 401 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHH
Confidence 8777766655544333333333333333333211 11111111 111100 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C------CCCCCCCC---------CCCCCCC-----CCCcc
Q 040875 628 FLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLD---R------DTKINPED---------PKGYRPE-----KITGH 684 (930)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~------~~~~~~~~---------~~~~~~~-----~~~g~ 684 (930)
=..+...+..+..+++..-++.+......|++..++ . .....++. ..+.+.+ .....
T Consensus 402 r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~g 481 (728)
T KOG0064|consen 402 RRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNG 481 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccc
Confidence 445556667777777777777777777777764432 1 00000110 0000000 11235
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|.++||-.--|.. ..+...+||+|++|-.+-|.||||||||||.+.|.|++|...|...+-- +.+|-
T Consensus 482 I~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mF 548 (728)
T KOG0064|consen 482 IILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIF 548 (728)
T ss_pred eEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceE
Confidence 8999998877753 3477999999999999999999999999999999999999888776532 34599
Q ss_pred EEccCCCCCcccHHHHhhcCCC------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 765 LVSQEPALFAVTVRENITYGAS------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
|+||.|+.=-||+||-|-|.+. ..++|.++...|..++|+. +.+-..|+|....- -.-||||+|||+++||.
T Consensus 549 YIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dW-kd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 549 YIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDW-KDVLSGGEKQRMGMARM 626 (728)
T ss_pred eccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhhccH-HhhccchHHHHHHHHHH
Confidence 9999999989999999988542 2578999999999999975 44556778876543 34799999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVL 895 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl 895 (930)
++.+|+--+|||+|||+-.+.|..+.++.++. |-+.|.||||++..+.-..++-.
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999999999999988765 89999999999987654444444
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.7e-31 Score=303.97 Aligned_cols=209 Identities=32% Similarity=0.465 Sum_probs=163.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|+. .++++|+||++.+|+++||||+||||||||+++|.|..+|++|+|..++- -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 5899999999953 46999999999999999999999999999999999999999999998873 269
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCC-CHHHHHHH------------------HHH-------hcchhHHhcCcccccc
Q 040875 764 ALVSQEPALFAV-TVRENITYGASDKI-DESEIIEA------------------AKA-------ANAHDFIAGLSEGYDT 816 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~~~-~d~ei~~a------------------l~~-------~~l~~~i~~Lp~gldt 816 (930)
+|++|+|.+.++ |+++.+..+...-. -..+.+++ .+. +.+......| |++.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999965 99999876532100 00111111 111 1111112222 2222
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEE
Q 040875 817 WCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVL 895 (930)
Q Consensus 817 ~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl 895 (930)
. ...-.+||||||-|++|||||+.+|+||+|||||.+||.++-.-+.+.|.+ ++| |+|+|||+-+++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 222357999999999999999999999999999999999999999988874 556 99999999999987 9999999
Q ss_pred eCCEEEEe-cChhHHhc
Q 040875 896 EQGRVVEE-GSHESLLA 911 (930)
Q Consensus 896 ~~G~ive~-G~~~eLl~ 911 (930)
+.|++..+ |.++.-++
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 99998754 66666554
No 382
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-31 Score=245.27 Aligned_cols=228 Identities=27% Similarity=0.409 Sum_probs=175.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC-----ccCCCCCHHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG-----EDIRSYHLRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG-----~di~~~~~~~ 758 (930)
-+++.++|..|.++. --+||||++.|||..||||+||||||||+++|.+-..|++|+|.++- .|+-.++-.+
T Consensus 6 LL~V~~lsk~Yg~~~---gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGK---GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCc---CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 578999999996442 45999999999999999999999999999999999999999999976 3444444333
Q ss_pred ----hhcceEEEccCCC--C-C----cccHHHHhh-cCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 759 ----LRRHVALVSQEPA--L-F----AVTVRENIT-YGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 759 ----lR~~i~~V~Q~p~--L-F----~gTIreNl~-~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
+|.--++|-|+|- | . .+.|-|-+. .|.. .+. +|.. ...+|.++..-. .+.+.+.+..||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-HYG--~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-HYG--NIRA-----EAQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-hhh--hHHH-----HHHHHHHhcccC-cccccCcccccc
Confidence 3556799999993 1 0 112222211 0100 111 1111 112333322111 234567799999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
||.+||+-|||-|+..|+++.+||||-+||...++.+.+.++.+-. +-.+++|||++..++- +||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999988753 7899999999999875 999999999999999
Q ss_pred cChhHHhccCCCcHHHHHHHH
Q 040875 904 GSHESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 904 G~~~eLl~~~~~g~y~~l~~~ 924 (930)
|-.+..+. ++...|-+|.-.
T Consensus 234 GLTDrvLD-DP~hPYTQLLVS 253 (258)
T COG4107 234 GLTDRVLD-DPHHPYTQLLVS 253 (258)
T ss_pred cccccccc-CCCCchHHHHHH
Confidence 99999997 488889887644
No 383
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=6.4e-31 Score=310.13 Aligned_cols=219 Identities=31% Similarity=0.475 Sum_probs=186.7
Q ss_pred ccEEEEEEEEEcCCCC--CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC---CCcEEEECCccCCCCCHH
Q 040875 683 GHIELQYVHFAYPARP--DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP---LKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~--~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~---~~G~I~idG~di~~~~~~ 757 (930)
-.++|+|+++.-++.+ .+.+|||||.+++|||..||.||||||||||+++|.|-.+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 4689999999987542 45699999999999999999999999999999999999975 6999999994 45678
Q ss_pred HhhcceEEEccCCCCCc-ccHHHHhhcCC----CCCCCH----HHHHHHHHHhcchhHHhcCccccccccCC-CCCCCCh
Q 040875 758 SLRRHVALVSQEPALFA-VTVRENITYGA----SDKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGD-RGLQLSG 827 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~-gTIreNl~~g~----~~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge-~G~~LSg 827 (930)
.+|+..+||+||..++. -||||++.|.. |.+.+. +.++++++..+|.+ + -||.+|. +...+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCcccc
Confidence 89999999999999885 69999998642 222233 45666666666652 2 3677764 3468999
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchh--hhccCEEEEEeCCEEEEec
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLST--IQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~t--i~~~DrI~vl~~G~ive~G 904 (930)
|||+|++||.-|+.||+||+||||||+||+.+...+.+.+++.. +|||||+.=|.++. ....|++++|.+|+++-.|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999986 59999999999986 3459999999999999999
Q ss_pred ChhHHhc
Q 040875 905 SHESLLA 911 (930)
Q Consensus 905 ~~~eLl~ 911 (930)
+++++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9988764
No 384
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=2.1e-28 Score=291.88 Aligned_cols=311 Identities=18% Similarity=0.164 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHH
Q 040875 12 AAFLEAYCWTRTGERQAT----RMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFF 87 (930)
Q Consensus 12 ~~~~~~~~~~~~~~r~~~----~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~ 87 (930)
+.++...++.+.+.+... ++|..+++++++++.+|++. . ++|++++.+++|++.+.+.....+...+..+.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 145 (585)
T TIGR01192 68 FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-R-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALF 145 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444545555544 45558999999999999984 5 78999999999999999877655555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHH
Q 040875 88 GSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSAL 167 (930)
Q Consensus 88 ~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r 167 (930)
+.+++.+.++|.++++.++.+|+...+..++.+++.+..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..
T Consensus 146 ~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~ 225 (585)
T TIGR01192 146 LLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFT 225 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHH
Confidence 66677888999999999988898888888889988888888888899999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040875 168 QGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASA 246 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a 246 (930)
++..+...+.....+.... ..++......+++++|.+++..+.++.|.+++++..+.....|+..+...+..+..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 305 (585)
T TIGR01192 226 NNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAK 305 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655555554554444 333444445566778888888899999999888877777888898888899999999999
Q ss_pred HHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 247 GEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 247 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+|+.++++.+++.+.... ....+...+.++++|++|+|+++ .++|+|+||++++||.++|+||||||||||+++|.
T Consensus 306 ~~ri~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 306 LEDFFDLEDSVFQREEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred HHHHHHHHcCCccccCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 9999999875443221111 11112234579999999999743 46899999999999999999999999999999986
Q ss_pred c
Q 040875 327 E 327 (930)
Q Consensus 327 ~ 327 (930)
+
T Consensus 383 g 383 (585)
T TIGR01192 383 R 383 (585)
T ss_pred c
Confidence 3
No 385
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=2e-28 Score=290.62 Aligned_cols=304 Identities=17% Similarity=0.202 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhc-hHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSE-KLPNFLVNVAIFFGS 89 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~-~~~~~~~~~~~~~~~ 89 (930)
++.++...+....+.++..++|..+++++++++.+ ..+...+.+.+|++.+++.+.. .....+..+..++ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~-------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~ 132 (544)
T TIGR01842 61 LLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR-------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-Y 132 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H
Confidence 44455555566678899999999999999998763 2245677888999999987765 3344444444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHH
Q 040875 90 YIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQG 169 (930)
Q Consensus 90 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~ 169 (930)
.++.+++.|.++++.+..+|+++.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.++|.+..++
T Consensus 133 ~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 212 (544)
T TIGR01842 133 LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSK 212 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHH
Confidence 45678888988888877777777777778888888888899999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040875 170 SVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGE 248 (930)
Q Consensus 170 e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 248 (930)
..+...+.....+.... ...+......+++++|.+++..|.+|+|.+++++.++.....|+..+......+.+++.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ 292 (544)
T TIGR01842 213 YLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYK 292 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666655544 33333444455677888888899999999999988888888999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 249 HIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 249 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+.++++.+++.+.. ...+...+.|+++|++|+||+. +.++|+|+||++++||.++||||||||||||+++|.+
T Consensus 293 ri~~~l~~~~~~~~~----~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 293 RLNELLANYPSRDPA----MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred HHHHHHhCCccccCC----CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999754432211 1112223579999999999743 3578999999999999999999999999999999864
No 386
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.5e-28 Score=291.49 Aligned_cols=315 Identities=14% Similarity=0.120 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHH
Q 040875 6 ACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAI 85 (930)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~ 85 (930)
.++.+++.+++..+....+.+...++|..+++++++.+.++++. . ++|++.+++++|++.+++.... ....+..+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~ 139 (555)
T TIGR01194 63 CLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-R-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAI 139 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-c-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHH
Confidence 34455666777777888899999999999999999999999984 5 8999999999999999998754 5555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccH--HHHHHH
Q 040875 86 FFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEG--KTLDEF 163 (930)
Q Consensus 86 ~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~--~~~~~~ 163 (930)
+++.+++.++++|.++++.+..+|+.+.+..++.++..+..++..+..++..+.+.|.+.|+++||.|+.|+ .+.+++
T Consensus 140 ~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 140 FFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 777778888999999999888888887777778788888888888888999999999999999999999954 556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040875 164 SSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISE 242 (930)
Q Consensus 164 ~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~ 242 (930)
.+..++..+...+.....+.... ..++......++.|++... +.++.|.+++++.+......|+..+...+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~ 296 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQ 296 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666655554444433332222 2223333333344444322 5788898888888888888899999999999999
Q ss_pred HHHHHHHHHHHhccCCC--CCC--CCccCC---cccCccccEEEEeeEEeCCCCC--CcccccceeeeecCCCEEEEEcc
Q 040875 243 AASAGEHIRDVIKRVPD--IDS--ENMEGE---TLEKFLGEVEFRNVVFAYPSRP--ETIIFKDFCLKVPAGNTVALVGG 313 (930)
Q Consensus 243 a~~a~~ri~~~l~~~~~--~~~--~~~~~~---~~~~~~~~i~~~~~~f~y~~~~--~~~~L~~isl~i~~G~~v~ivG~ 313 (930)
+++|++|+.++++..++ ... ...... .+....+.|+++|++|+|+..+ +.++|+|+||++++||+++||||
T Consensus 297 a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~ 376 (555)
T TIGR01194 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGE 376 (555)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECC
Confidence 99999999999853211 100 000000 1112235799999999998532 24699999999999999999999
Q ss_pred CCCCCcccccccc
Q 040875 314 SGSGKSTVVSASL 326 (930)
Q Consensus 314 sGsGKSTll~~ll 326 (930)
||||||||+++|.
T Consensus 377 sGsGKSTl~~ll~ 389 (555)
T TIGR01194 377 NGCGKSTLAKLFC 389 (555)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999985
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-30 Score=272.82 Aligned_cols=191 Identities=25% Similarity=0.305 Sum_probs=129.8
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHhcccCCCCcEEEEC-C------ccCCCCC---HHHhh-cceEEE
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTII-GLIERFYDPLKGVVKID-G------EDIRSYH---LRSLR-RHVALV 766 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~-~lL~rl~~~~~G~I~id-G------~di~~~~---~~~lR-~~i~~V 766 (930)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+. ..+.+ ....+.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 44689999999999999999999999999996 3332 13443221 0 1111111 11122 234555
Q ss_pred ccCCCCC-c-----ccHHHHhhcCCC--CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 767 SQEPALF-A-----VTVRENITYGAS--DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 767 ~Q~p~LF-~-----gTIreNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
.|++... + +++.+...+-+. .....++..+.++.+++.+. .....+.+||||||||++||||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHH
Confidence 5655321 1 122222211100 01111222344444444221 2345678999999999999999
Q ss_pred hccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------eCCEEEEec
Q 040875 839 ILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------EQGRVVEEG 904 (930)
Q Consensus 839 Ll~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G 904 (930)
|+++| ++|||||||++||+.+.+.+.+.|++.. +|.|+|+|||+++.+..||+|++| ++|+|+|+|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998 5999999999999999999999998864 589999999999998889999999 999999987
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=3.6e-30 Score=279.95 Aligned_cols=196 Identities=29% Similarity=0.377 Sum_probs=162.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|.++||+|.|++.+ .++++++|-|.++++||+|||||+|||||++++.|...|+.|.|.-.-. -+
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 4699999999997654 6899999999999999999999999999999999999999998864322 12
Q ss_pred eEEEccC---CCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 763 VALVSQE---PALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 763 i~~V~Q~---p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
+++--|+ -.-.+-|.-|++.---++..+.+++...+.++||....+..| -.+||+|||.||+.||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHH
Confidence 3344443 345677777887543332356678888999999975544333 248999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
++.|.||+|||||++||.++-....++|.+. .-+||+|+|+...|.+ +++|.+.+||.+...
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999999999999999876 5699999999999987 899999999998753
No 389
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=7.5e-28 Score=287.27 Aligned_cols=313 Identities=23% Similarity=0.372 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHH
Q 040875 7 CIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIF 86 (930)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~ 86 (930)
++..++.+.+..+..+.+.+...++|..+++++++.+.++++. . ++|++++.+++|++.++..+..........+..+
T Consensus 63 ~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~ 140 (567)
T COG1132 63 LLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-A-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL 140 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-C-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344555555666677778999999999999999999999995 4 7899999999999999999887655555567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHH
Q 040875 87 FGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSA 166 (930)
Q Consensus 87 ~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~ 166 (930)
++.+++.+..+|.++++.+...|++.....++.++..+..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+.
T Consensus 141 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~ 220 (567)
T COG1132 141 IGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEA 220 (567)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHH
Confidence 88889999999999999999888888888888887789999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040875 167 LQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAAS 245 (930)
Q Consensus 167 r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~ 245 (930)
.++..+...+.....+.... ...+.......+.|+|..++..+.++.|.+.+.+..+.....|+..+...+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 300 (567)
T COG1132 221 NEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASA 300 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776666666666654 55666777777788888888888899999888888888888899999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 246 AGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 246 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
|++|++++++.++++...... .....+.|+|+||+|+|++ +.++|+|+||++++||.+||||||||||||++++|
T Consensus 301 a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 301 AAERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred HHHHHHHHHcCCccccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999875543322211 2233467999999999974 56799999999999999999999999999999998
Q ss_pred c
Q 040875 326 L 326 (930)
Q Consensus 326 l 326 (930)
.
T Consensus 376 ~ 376 (567)
T COG1132 376 L 376 (567)
T ss_pred h
Confidence 4
No 390
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=8.9e-28 Score=288.38 Aligned_cols=306 Identities=21% Similarity=0.323 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 040875 12 AAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYI 91 (930)
Q Consensus 12 ~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (930)
+.++....+...+.+...++|..++.++++.+.++++. . ++|++.|.+++|++.+++........++..+..+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~ 158 (592)
T PRK10790 81 LHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-Q-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLV 158 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555667788999999999999999999984 5 799999999999999999888777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHH
Q 040875 92 VGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSV 171 (930)
Q Consensus 92 ~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~ 171 (930)
+.++++|.++++.+.++|+++.+..++.++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..
T Consensus 159 ~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (592)
T PRK10790 159 AMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHY 238 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 88899999998888888888777777888888888888888888899999999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHH-HH-HHHH-HHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 040875 172 KLGLKQGLCKGFA-SG-INAI-TYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGE 248 (930)
Q Consensus 172 ~~~~k~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ 248 (930)
+...+.....+.. .. ..++ ......+..++|. +..|.++.|.++.+..+......|+..+......+.++..+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ 316 (592)
T PRK10790 239 MARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGE 316 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544444432 11 1111 1112223334443 4577899999888888888888899999999999999999999
Q ss_pred HHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 249 HIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 249 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+.++++.+++ +... . ......+.|+++|++|+||. +.++|+|+||+|++||.++|||+||||||||+++|.+
T Consensus 317 ri~~~l~~~~~-~~~~-~--~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 317 RVFELMDGPRQ-QYGN-D--DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred HHHHHhcCCCc-cCCC-C--ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999875432 1111 1 11122357999999999974 3569999999999999999999999999999999853
No 391
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=261.36 Aligned_cols=203 Identities=26% Similarity=0.382 Sum_probs=154.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEc-cCCCCC-cccHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVS-QEPALF-AVTVR 778 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~-Q~p~LF-~gTIr 778 (930)
++.+||||+||||+++|++|+|||||||++|+|.|+..|++|.|.++|.+--+-..+.+| ++++|. |.-+|. .--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 478999999999999999999999999999999999999999999999876653333344 455543 433221 10122
Q ss_pred HHhhcCC-CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCH
Q 040875 779 ENITYGA-SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857 (930)
Q Consensus 779 eNl~~g~-~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~ 857 (930)
|-+..-. --+.+|++..+-++. +++-| +++..+-..-..||-|||-|.-||-||+++|+||.|||||=+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~-----l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDF-----LTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHH-----HHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2111000 013444444333221 11111 233334445578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 858 QSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 858 ~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
.+...|.+.+++.. .++||+..||.++-|.. ||||+.+++|+++..|+-++|.+
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 99999999998865 48999999999999965 99999999999999999999987
No 392
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=1.8e-27 Score=285.31 Aligned_cols=298 Identities=18% Similarity=0.194 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 25 ERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQLVVVG 104 (930)
Q Consensus 25 ~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 104 (930)
.+...++|..+++++++.+.++++. . ++|++.+++++|++.+.+.....+...+..+..++..+++.++++|.++++.
T Consensus 85 ~~~~~~l~~~l~~~l~~~~~~~~~~-~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 162 (588)
T PRK13657 85 HRRRLAVLTEYFERIIQLPLAWHSQ-R-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVL 162 (588)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHCc-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445558999999999988884 5 8999999999999999876655555555566666666777788999898888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 105 FPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKGFA 184 (930)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~~~~~~~~ 184 (930)
++++|+...+..++.+...+..++..+..++..+...|.+.|+++||.|+.|+.+.+++.+.-++..+...+.....+..
T Consensus 163 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK13657 163 VVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALA 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999999888777666665555555444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 040875 185 SG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIRDVIKRVPDIDSE 263 (930)
Q Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~ 263 (930)
.. ..++......++.++|.+++..|.+|+|++++++.++.....|+..+...+..+..++.+.+|+.++++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 33 33344445556667888888889999999998888888888899888888999999999999999998764432211
Q ss_pred CccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 264 NMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.. ....+...+.|+++|++|+||++ .++|+|+||++++||.++||||||||||||+++|++
T Consensus 323 ~~-~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 323 PG-AIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CC-CCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 11 11112223579999999999743 468999999999999999999999999999999863
No 393
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=2.4e-29 Score=264.75 Aligned_cols=194 Identities=29% Similarity=0.382 Sum_probs=141.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-----c-ccC----CCCc-----------EEEECCccCCCCCHH---
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE-----R-FYD----PLKG-----------VVKIDGEDIRSYHLR--- 757 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~-----r-l~~----~~~G-----------~I~idG~di~~~~~~--- 757 (930)
.|||+|++||.|+.++|+|.||||||||++-++ + +.. |..+ -|.+|..+|..-+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 589999999999999999999999999998552 2 111 2222 366676666442211
Q ss_pred -------Hhhc----------------ceEEEccCCC-CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccc
Q 040875 758 -------SLRR----------------HVALVSQEPA-LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEG 813 (930)
Q Consensus 758 -------~lR~----------------~i~~V~Q~p~-LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~g 813 (930)
++|+ .+.|.+++.. ...-|+.||+.|... ....++..++++.++|.+.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL~~l------- 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGLGYI------- 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCCchh-------
Confidence 1111 1333344432 234467777655421 1122344455555544321
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhcc
Q 040875 814 YDTWCGDRGLQLSGGQKQRIAIARAILKN---PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNC 889 (930)
Q Consensus 814 ldt~vge~G~~LSgGQrQrlaLARALl~~---~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~ 889 (930)
..+....+||||||||++|||||+++ |+++||||||++||+++.+.+.+.|++.. +|.|+|+|+|+++.+..|
T Consensus 162 ---~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 162 ---KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred ---hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 24566789999999999999999996 79999999999999999999999998875 489999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 040875 890 DMIAVL------EQGRVVEEGSH 906 (930)
Q Consensus 890 DrI~vl------~~G~ive~G~~ 906 (930)
|+|++| ++|+|+++|+|
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999986
No 394
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.5e-29 Score=258.08 Aligned_cols=164 Identities=26% Similarity=0.296 Sum_probs=135.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---------CcEEEECCccCCCCCHHHhhcceEEEccCCCCCc
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---------KGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA 774 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---------~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~ 774 (930)
+++++++++| .++|+||||||||||+++|.++.+|. .|++.++|.++.. ...++++++|||+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 3468888887754 23468899999999877
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEeec
Q 040875 775 VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL----KNPAVLLLDE 850 (930)
Q Consensus 775 gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl----~~~~ILiLDE 850 (930)
++. ...+++.++++. ++-.+ ..+..||||||||++||||++ ++|++++|||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 221 123456666655 11122 345689999999999999986 5779999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 851 ATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 851 aTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
||++||+++...+.+.|++..++.|+|+|||+++.+..||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999998778999999999999888999999853
No 395
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-29 Score=238.80 Aligned_cols=187 Identities=24% Similarity=0.363 Sum_probs=156.7
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+.+|++|+|+++|.++.+.. +..++.+-|
T Consensus 4 ~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 4 EAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred hhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 445555543 3446899999999999999999999999999999999999999999999999998755 334777888
Q ss_pred EccCCCCC-cccHHHHhhcCCC--CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 766 VSQEPALF-AVTVRENITYGAS--DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 766 V~Q~p~LF-~gTIreNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
+.-.|-+= .-|+.||+.|... +..+++.+|+|++.++|.++. |.|+ .+||-||+.|+||||-++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-------dlp~----~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-------DLPV----GQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-------ccch----hhcchhHHHHHHHHHHHcCC
Confidence 88777443 5699999998642 125678999999999998753 3333 37999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~ 887 (930)
+++.||||||++||.+.+..+-..+.... +|--||..||...-+.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 99999999999999999999988887765 5889999999987654
No 396
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.96 E-value=1.5e-26 Score=274.48 Aligned_cols=308 Identities=17% Similarity=0.181 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHH
Q 040875 9 AWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFG 88 (930)
Q Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~ 88 (930)
.+++.+++..+....+.+...++|..+++++++++.++++. . ++|++.|++++|++.+...+. .++..+..+..+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-L-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-c-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455666677778899999999999999999999999984 5 799999999999999998664 35566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc--ccHHHHHHHHHH
Q 040875 89 SYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFV--GEGKTLDEFSSA 166 (930)
Q Consensus 89 ~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~--~e~~~~~~~~~~ 166 (930)
.+++.++++|.++++.++++|+.+.+..++.++..+..++..+..++..+..+|.++|++++++.. +|+.+.+++++.
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~ 217 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPD 217 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHH
Confidence 888888999999999999999988888899999999999999999999999999999999997432 334566777776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040875 167 LQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAAS 245 (930)
Q Consensus 167 r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~ 245 (930)
.++..+...+.......... ...+......+++|++... +..+.+.+............|+..+...+..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 294 (547)
T PRK10522 218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQV 294 (547)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444333332222 1111122222223333221 1112222222222233355788888888999999999
Q ss_pred HHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 246 AGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 246 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.+|+.++++.+++.+.. . ....+ ..+.++++|++|+||+ ++++|+|+||+|++||.++||||||||||||+++|
T Consensus 295 a~~ri~~l~~~~~~~~~~-~-~~~~~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 369 (547)
T PRK10522 295 AFNKLNKLALAPYKAEFP-R-PQAFP-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369 (547)
T ss_pred HHHHHHHHhccccccccc-c-ccccC-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 999999987543221111 1 11111 1247999999999984 34689999999999999999999999999999998
Q ss_pred cc
Q 040875 326 LE 327 (930)
Q Consensus 326 l~ 327 (930)
.+
T Consensus 370 ~g 371 (547)
T PRK10522 370 TG 371 (547)
T ss_pred hC
Confidence 64
No 397
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.5e-29 Score=230.85 Aligned_cols=203 Identities=24% Similarity=0.333 Sum_probs=148.7
Q ss_pred cEEEEEEEEEcC--CC--CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC----ccCCCCC
Q 040875 684 HIELQYVHFAYP--AR--PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG----EDIRSYH 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~--~~--~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG----~di~~~~ 755 (930)
.+..+||+.++- .+ -..||++|+||++++||++.+-||||||||||++.|.+=|.|++|+|++.- +|+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367777765552 11 134799999999999999999999999999999999999999999999843 2444444
Q ss_pred H----HHhhcceEEEccCC----CCCc-ccHHHHh-hcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCC
Q 040875 756 L----RSLRRHVALVSQEP----ALFA-VTVRENI-TYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQL 825 (930)
Q Consensus 756 ~----~~lR~~i~~V~Q~p----~LF~-gTIreNl-~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~L 825 (930)
. +-.|+.|+||+|-- -.-. +-+.|-+ ..|.+.+.-.++....+.+.++-+..=+| .+..|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 3 33467899999942 1111 1122222 11221111112233344444444433333 46799
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEe
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
||||+||+-|||.+.-+-+||+|||||++||..+.+.+.+.|++.. +|+.+|=|=|+-+.=.. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999999875 69999999999876554 89998775
No 398
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=6.1e-27 Score=279.48 Aligned_cols=198 Identities=28% Similarity=0.416 Sum_probs=169.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccCCCCCHHHhhcceEEEccCC-CCCccc
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDIRSYHLRSLRRHVALVSQEP-ALFAVT 776 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p-~LF~gT 776 (930)
...|+||+=-++||..+|++|+||||||||++.|.+=..- .+|+|+|||.+..+ +..++.+|||.|++ ++=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 4589999999999999999999999999999999986432 47999999998765 78899999999977 677789
Q ss_pred HHHHhhcCC----CCCCCHHH----HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC-CEEE
Q 040875 777 VRENITYGA----SDKIDESE----IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP-AVLL 847 (930)
Q Consensus 777 IreNl~~g~----~~~~~d~e----i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~-~ILi 847 (930)
|||-|.|.. |.+.+++| ++++.+..+|.+.- |..||.-|..||..||.|+.||=-|+.|| .||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999998752 23445443 56777777776543 56688889999999999999999999999 8999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhh--hccCEEEEEe-CCEEEEecChh
Q 040875 848 LDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTI--QNCDMIAVLE-QGRVVEEGSHE 907 (930)
Q Consensus 848 LDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti--~~~DrI~vl~-~G~ive~G~~~ 907 (930)
||||||+||+++...|.+.++++. .|+||++.=|.++.. +..|+++.|+ .|+.|-.|+..
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999999999999999999999986 599999999999864 5699999996 58899998854
No 399
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=3.8e-28 Score=252.02 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=144.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHh-cccCCCCcEEEECCccCCCCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIE-AEKSTALVGQSGSGKSTIIGLIE-RFYDPLKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~-~Ge~vaIVG~sGsGKSTL~~lL~-rl~~~~~G~I~idG~di~~~~~~~lR~ 761 (930)
.|+++|+. +|.++ ++++|+.. +|+.++|+|+||||||||+++|. .+|.+..+....+ .+...+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 77432 56777654 58999999999999999999999 4776666666554 2333445556678
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHH--HHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAA--KAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al--~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
.+++++|++.- ...+..+. ..+.++..+.. +..+ +++.+...+.+||+|||||++||||+
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~---gl~~~~~~~~~~l~~g~-----------l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR---GLDYDQFTRIVLLPQGE-----------FDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEEEECCe----EEEEEEec---CCCHHHHHHhhhhhhcc-----------hHHHhcCCccccCHHHHHHHHHHHHH
Confidence 89999999832 22222222 23444443322 2222 34444567789999999999999999
Q ss_pred cc----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 840 LK----------NPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 840 l~----------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
+. +|+++||||||++||+.+...+.+.+++..+ ++|+|+|||+++.+.. ||+|++|++|.+
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 85 5789999999999999999999999988765 8999999999998876 899999999853
No 400
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.4e-27 Score=254.09 Aligned_cols=192 Identities=24% Similarity=0.301 Sum_probs=138.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc----------------cCCCCc-----
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF----------------YDPLKG----- 742 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl----------------~~~~~G----- 742 (930)
.|+++|.. +|. +..++++++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 35666542 353 234677776 899999999999999999999843 444445
Q ss_pred ---EEEECCccCCC-C--CHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHH--hcCcccc
Q 040875 743 ---VVKIDGEDIRS-Y--HLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFI--AGLSEGY 814 (930)
Q Consensus 743 ---~I~idG~di~~-~--~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i--~~Lp~gl 814 (930)
+|.+++.|-.. + ....++++++++||++.++. ...+.++++.+++.+++.+.- ..+|.|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555532211 0 12234566777776665422 135677888888888775421 0122322
Q ss_pred -------ccccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 040875 815 -------DTWCGDRGLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRL 883 (930)
Q Consensus 815 -------dt~vge~G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl 883 (930)
+....+.+.+||||||||++||||++ ++|++++|||||++||+++.+.+.+.|+++.++.|+|+++|+.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 22235678899999999999999996 4689999999999999999999999999987788999999998
Q ss_pred hhhhccCEEEEEe
Q 040875 884 STIQNCDMIAVLE 896 (930)
Q Consensus 884 ~ti~~~DrI~vl~ 896 (930)
+....||+|++|+
T Consensus 222 ~~~~~~d~i~~l~ 234 (243)
T cd03272 222 ELLEVADKFYGVK 234 (243)
T ss_pred HHHhhCCEEEEEE
Confidence 8877899999995
No 401
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.7e-24 Score=236.14 Aligned_cols=301 Identities=16% Similarity=0.174 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 21 TRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQL 100 (930)
Q Consensus 21 ~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 100 (930)
...+.++...+|...+.++.+.+..+-+ +. ++|+.++++..-++.++...+..+|..+...+..+..++..|+..|..
T Consensus 65 ~~aa~~~~~~LR~~~l~~l~~~gp~~~~-~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~a 142 (559)
T COG4988 65 YRAAAKVRASLRQLVLDKLAKLGPAFIA-QK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAA 142 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhc-CC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4445566667777777777777777655 34 899999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHH---H
Q 040875 101 VVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLK---Q 177 (930)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k---~ 177 (930)
+++.+.++|++-.....+++..++..++..+.+.+=...-=..+.|+-|+|.|+-.+...+++.+.-++-++..++ .
T Consensus 143 alIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLri 222 (559)
T COG4988 143 ALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRI 222 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988889999999999999999999999999999999999999999998888887554444333333 3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Q 040875 178 GLCKGFASGINAITY-AIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIRDVIKR 256 (930)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~ 256 (930)
.+.++.. +-++.+ ++...+.++|..++..|+++....|.++.+.--.-.|+..+...++.-.++..|.++++.|++.
T Consensus 223 AflSs~v--Leffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~ 300 (559)
T COG4988 223 AFLSSAV--LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLES 300 (559)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 3332211 223333 3333445567666643566665555555544445578888999999999999999999999986
Q ss_pred CCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 257 VPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+++.................++.+|++|.||..+ ++++|+||++++||.+||||+||||||||+++|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 301 PVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCCCCCCccccccccCCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5432221110011111123455569999998543 79999999999999999999999999999999864
No 402
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=9.6e-25 Score=262.51 Aligned_cols=297 Identities=13% Similarity=0.061 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 040875 26 RQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFM-ILWQLVVVG 104 (930)
Q Consensus 26 r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~l~~ 104 (930)
++..++|..+++.+...+.+++|. ++|++.+++++|++.+.+.+...+...+.++..+++..+..+. .+|.++++.
T Consensus 169 ~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~ 245 (659)
T TIGR00954 169 RLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGL 245 (659)
T ss_pred HHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 344444444444433334555662 5799999999999999999988888888888888877666664 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 105 FPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLCKGFA 184 (930)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~~~~~~~~ 184 (930)
++.+|+.+.+..++.+.+.+..++..+..++-....+|.++|+++||+|+.|+.+.+++++.-++..+...+...+.+..
T Consensus 246 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 325 (659)
T TIGR00954 246 FAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSY 325 (659)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999998888888777777766655
Q ss_pred HH-HHHHHHH-HHHHH-HHHHHHHHh-c----ccCCcchHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 040875 185 SG-INAITYA-IWSFL-AYYGSRLVM-Y----HGAKGGAVFAAGT----TIVVGGQALGAGLSNFKYISEAASAGEHIRD 252 (930)
Q Consensus 185 ~~-~~~~~~~-~~~~~-~~~~~~~~~-~----~~~~~~~vft~~~----~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~ 252 (930)
.. ..++... ...++ .+.|...+. . +.+|.|..+..+. .+.....|+..+...+..+.++.++.+|+.+
T Consensus 326 ~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ 405 (659)
T TIGR00954 326 GFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDT 405 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3333221 12222 223332222 2 5677776544222 2445567888889999999999999999999
Q ss_pred HhccCCCCCCC-------Cc-c--------------CCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEE
Q 040875 253 VIKRVPDIDSE-------NM-E--------------GETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVAL 310 (930)
Q Consensus 253 ~l~~~~~~~~~-------~~-~--------------~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~i 310 (930)
+++.+++.+.. .. . ........+.|+++|++|+||+ +.++|+|+||+|++||.++|
T Consensus 406 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~I 483 (659)
T TIGR00954 406 LLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLI 483 (659)
T ss_pred HHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEE
Confidence 99753322100 00 0 0001112356999999999974 24689999999999999999
Q ss_pred EccCCCCCccccccccc
Q 040875 311 VGGSGSGKSTVVSASLE 327 (930)
Q Consensus 311 vG~sGsGKSTll~~ll~ 327 (930)
+||+|||||||+++|.+
T Consensus 484 vG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 484 CGPNGCGKSSLFRILGE 500 (659)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 99999999999999853
No 403
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=2.3e-27 Score=221.53 Aligned_cols=208 Identities=29% Similarity=0.443 Sum_probs=174.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
+.++||+..- | |-.+|..+.+||.+-+|||||||||||+..+.|+. |-+|+|.++|.|++.+..++|-++=+
T Consensus 4 ~qln~v~~~t--R-----L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST--R-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc--c-----ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667776533 2 46678999999999999999999999999999998 56999999999999999999999999
Q ss_pred EEccCC-CCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc--
Q 040875 765 LVSQEP-ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK-- 841 (930)
Q Consensus 765 ~V~Q~p-~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~-- 841 (930)
|..|+- -.|.--|..-+.+..|.+.-.+++.+++++.++.| .++..-.+|||||.||+-||-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 998855 57888888888876653333345666666665544 3345567899999999999988874
Q ss_pred ---CC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCch-hhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 842 ---NP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLS-TIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 842 ---~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~-ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|| ++|++|||-++||...+..+-..|.+.+ +|.|||+-.|+++ |++++|++..+..|++...|+-+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 33 7999999999999999988888888776 5999999999997 678999999999999999999999985
No 404
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=283.36 Aligned_cols=216 Identities=24% Similarity=0.421 Sum_probs=187.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC-CHHHhhc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY-HLRSLRR 761 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~-~~~~lR~ 761 (930)
-.+..+|++..|+.+.. +.+++|+.+++||+.|+-|+|||||||+++++.|..+|++|+++++|.|++.- +..+.|+
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 36899999999976532 78999999999999999999999999999999999999999999999999764 4556999
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCC-CC---CC-HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGAS-DK---ID-ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~-~~---~~-d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++||.||+-.|+. -|.||.+.+-.. .. .+ ++.+.+.|+.++|.+... ++ -.++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQ----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cc----hhhCCCcchhhHHH
Confidence 9999999887775 599999975321 11 11 234677888888877643 33 34899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|-|++.+|++++|||||+++||.+++.+.+.|++..+ ++.+|..||.++.... |||+..|.+|++...|++++|-.
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999887 4599999999999976 99999999999999999999975
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.8e-25 Score=237.73 Aligned_cols=208 Identities=27% Similarity=0.429 Sum_probs=168.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..+++.+|+|.|+..+. +.+++++++++.-.++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 57999999999964322 789999999999999999999999999999999999999999998877 678
Q ss_pred eEEEccCCCCCcccHHHHhh---c---CCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCC-CCCChHHHHHHHH
Q 040875 763 VALVSQEPALFAVTVRENIT---Y---GASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRG-LQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~---~---g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G-~~LSgGQrQrlaL 835 (930)
++|-.|.-+=| ..-|.. + ..| ..+++|+++.|...|+..-+ ...+ ..||||||-|+++
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~p-G~~~ee~r~hl~~~Gl~g~l-----------a~~si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFP-GKTEEEIRRHLGSFGLSGEL-----------ALQSIASLSGGQKSRVAF 493 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCC-CCCHHHHHHHHHhcCCCchh-----------hhccccccCCcchhHHHH
Confidence 99999977522 222221 0 112 24889999999888775433 3333 5799999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
|-....+|.+|||||||..||.++-..+-++|+.. +--||+|||+.+.+.. |+.+.+.++|+|.- ++ ..
T Consensus 494 A~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~-------ie-g~ 563 (582)
T KOG0062|consen 494 AACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP-------IE-GG 563 (582)
T ss_pred HHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe-------ee-cc
Confidence 99999999999999999999999999999999864 3479999999999986 99999999999986 22 11
Q ss_pred CcHHHHHHHHhhh
Q 040875 915 AGAYYSLVSLQTA 927 (930)
Q Consensus 915 ~g~y~~l~~~~~~ 927 (930)
-..|.++...+..
T Consensus 564 ~~~yKkl~~~e~~ 576 (582)
T KOG0062|consen 564 IDKYKKLLGAELR 576 (582)
T ss_pred HHHHHHHHHHHHh
Confidence 1247777765544
No 406
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.9e-24 Score=231.49 Aligned_cols=314 Identities=18% Similarity=0.225 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHH
Q 040875 6 ACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAI 85 (930)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~ 85 (930)
.++.-++..+..+.|..+.++..+..-+..+..+.+.+.++|-. . ++|++.+.|.+-...|.+.+.--+..++..+.-
T Consensus 84 r~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~ 161 (591)
T KOG0057|consen 84 RLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-R-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFE 161 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-C-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777888888888888888888888888888773 4 899999999999988888775433333333222
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHH
Q 040875 86 FF-GSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFS 164 (930)
Q Consensus 86 ~~-~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~ 164 (930)
.. +..++.+-.|...+++.+.++...+.+...+.++=.++|++++++.+++.+.+-+.|.+--+||.|+-|+.+.++|.
T Consensus 162 i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~ 241 (591)
T KOG0057|consen 162 IALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYD 241 (591)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 11 12223333333444555666666666667788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040875 165 SALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEA 243 (930)
Q Consensus 165 ~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a 243 (930)
....+-.+...+..-..++... -..++....+...+.|..-+..+.+|.++..-...++..+..|+..+...+..+.++
T Consensus 242 ~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~ 321 (591)
T KOG0057|consen 242 GSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQA 321 (591)
T ss_pred HHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9988877766665444443332 334444555556666666566778999998878888888999999988888777777
Q ss_pred HHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccc
Q 040875 244 ASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVS 323 (930)
Q Consensus 244 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~ 323 (930)
..-.+..+...+... +... ...++..+.+.|+|+||+|+|+ |++++|+++||+||+||.|||||++||||||+++
T Consensus 322 l~Dm~~~~~l~~~~~--~i~~-~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr 396 (591)
T KOG0057|consen 322 LTDMRTLFILLEVDE--DIQE-AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILR 396 (591)
T ss_pred HHhHHHHHhhhhhhh--hhhh-ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 776555544332211 1111 0123334456799999999997 4567999999999999999999999999999999
Q ss_pred ccc
Q 040875 324 ASL 326 (930)
Q Consensus 324 ~ll 326 (930)
+|+
T Consensus 397 ~Ll 399 (591)
T KOG0057|consen 397 LLL 399 (591)
T ss_pred HHH
Confidence 985
No 407
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=4.1e-26 Score=243.28 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=139.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECCc-cCCCCC-H-HHhhcceEEEccCCCC---------C-cccHH
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGE-DIRSYH-L-RSLRRHVALVSQEPAL---------F-AVTVR 778 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG~-di~~~~-~-~~lR~~i~~V~Q~p~L---------F-~gTIr 778 (930)
...++||||||||||||+.+|.++..++ .|+++..|. |+-..+ . ...+.++++++|+|.- . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999998876 568998887 542211 1 1234589999999631 1 35788
Q ss_pred HHhhcCCC-------CCCCHHHHHHHHHHhcch--h--H------HhcCccccccccCCCCCCCChHHHHHHHHHHHhc-
Q 040875 779 ENITYGAS-------DKIDESEIIEAAKAANAH--D--F------IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL- 840 (930)
Q Consensus 779 eNl~~g~~-------~~~~d~ei~~al~~~~l~--~--~------i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl- 840 (930)
+|+..+.. .....+++.++++.+++. + + |.++-+. .......+.+||+|||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 77765431 123457888899998874 0 0 1100000 01223457789999999999999997
Q ss_pred ---cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 040875 841 ---KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 841 ---~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
.+|++++|||||++||+++.+.+.+.|++..+|.|+|+||||.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888999999999999888999998764
No 408
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=6.3e-26 Score=232.90 Aligned_cols=162 Identities=27% Similarity=0.309 Sum_probs=130.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHH----hcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCC-----CCCc-cc
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLI----ERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEP-----ALFA-VT 776 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL----~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p-----~LF~-gT 776 (930)
++++.+| +++|+|+||||||||+.+| .|...|..|.+..|...+.. ...+..+++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4667777 9999999999999999998 48888888877633322322 34567899999998 3332 28
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH------HHHHHHhccCCCEEEeec
Q 040875 777 VRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR------IAIARAILKNPAVLLLDE 850 (930)
Q Consensus 777 IreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr------laLARALl~~~~ILiLDE 850 (930)
+.+|+.+.+ ++++.+.+ .+.+.+||+||||| +|||||+..+|++++|||
T Consensus 93 ~~~~~~~~~-----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 93 ILENVIFCH-----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred Hhhceeeec-----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 999997642 23333322 34567999999996 799999999999999999
Q ss_pred cCCCCCHHHHH-HHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeC
Q 040875 851 ATSALDSQSEK-LVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 851 aTSaLD~~te~-~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
||++||+++.. .+.+.|++..+ ++|+|+|||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999998 99999988765 7899999999998888999999964
No 409
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3.9e-25 Score=246.25 Aligned_cols=217 Identities=22% Similarity=0.342 Sum_probs=172.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH-Hhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR-SLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~-~lR~~ 762 (930)
.++++|++..- .++|+||++++||++||.|--|||+|=++.+|+|.-++.+|+|.+||+++.--+.. ..+..
T Consensus 263 ~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 57788876421 46999999999999999999999999999999999999999999999988777654 67889
Q ss_pred eEEEccCC----CCCcccHHHHhhcCCCCCCCHH-HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 763 VALVSQEP----ALFAVTVRENITYGASDKIDES-EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 763 i~~V~Q~p----~LF~gTIreNl~~g~~~~~~d~-ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
|+|||-|- .+-.-||++|+.+......... -+.+.-++....+++..|.-.-..+ ...-.+||||-.|+++|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~-~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP-EQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc-cchhhcCCchhhhhHHHHH
Confidence 99999876 3446799999977521111100 2333444445555666553221111 1234579999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
.|..+|+||||||||-++|.-+.+.|.+.|+++. +|++||+||-.+..+. .||||+||.+|+|+..=+.++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999986 5999999999999887 599999999999997544443
No 410
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.8e-26 Score=235.56 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=135.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhh-cc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR-RH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR-~~ 762 (930)
.|+++|.. +|. +..+++++++ +.+||+|||||||||++++|. +++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 47788876 774 3348888887 899999999999999999997 3455443 2333 67
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHH-----HHHHHH----hcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASDKIDESEI-----IEAAKA----ANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~~~~d~ei-----~~al~~----~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
+++++|++.++.. |.++++.+... ....+.+ ...-.. .+-...+.+||++.++. ...||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~----~~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN----ISNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc----hhhcCHHHHHH
Confidence 9999999877654 66666654321 1111100 000000 01111234567777665 34799999999
Q ss_pred HHHHHHhcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 833 IAIARAILK----NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 833 laLARALl~----~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
++||||++. +|++++|||||++||+++...+.+.+++..++.|+|+|||+.+....||||++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999963 58999999999999999999999999998778999999999888888999999963
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=7.4e-25 Score=266.03 Aligned_cols=104 Identities=33% Similarity=0.496 Sum_probs=93.2
Q ss_pred cccc-ccCCCCCCCChHHHHHHHHHHHhccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 040875 813 GYDT-WCGDRGLQLSGGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 813 gldt-~vge~G~~LSgGQrQrlaLARALl~~~---~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~ 887 (930)
|++. ..+.....||||||||++|||||+++| +++||||||++||+++...+.+.|+++. +|.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356778899999999999999999999 9999999999999999999999998875 5899999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhccCCCcH
Q 040875 888 NCDMIAVL------EQGRVVEEGSHESLLAKGPAGA 917 (930)
Q Consensus 888 ~~DrI~vl------~~G~ive~G~~~eLl~~~~~g~ 917 (930)
.||+|++| ++|+|++.|+|+++.++ +++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~-~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKV-EASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC-cccH
Confidence 99999999 79999999999999973 5443
No 412
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-22 Score=219.03 Aligned_cols=299 Identities=16% Similarity=0.239 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHH
Q 040875 21 TRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFG-SYIVGFMILWQ 99 (930)
Q Consensus 21 ~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~ 99 (930)
.-...|+-..+|..+++++...+....+ .. .+|++.|++..|++.+++..-.-..-++..+..+.+ .+.++| ++|.
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~-r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f-~~~~ 159 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLL-RY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSF-FSIP 159 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHH-hc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH-hhHH
Confidence 3344577778888888888776655444 24 789999999999999999765433223222222222 222222 3344
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Q 040875 100 LV-VVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQG 178 (930)
Q Consensus 100 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~~ 178 (930)
.+ +.++..+..++++-..+.++-++..++......+=-+-..+.++|..-.++||.++.+.+.+.+.-..-.+.-.|..
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44444444444444444455555555544444444556677899999999999999999999877776666666666
Q ss_pred HHHHHHHH-HHHHHHHHHH-HHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhc
Q 040875 179 LCKGFASG-INAITYAIWS-FLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGL-SNFKYISEAASAGEHIRDVIK 255 (930)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~-~~~~~~~~a~~a~~ri~~~l~ 255 (930)
.+.++..+ ...+...+.. ...|.+.. ...|..+...+...+..+.....++..+. ..+.-..+...|++|+.+.++
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~ 318 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILD 318 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhcc
Confidence 66666555 2222222222 44555432 23344442122222222122222222222 456778889999999999998
Q ss_pred cCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 256 RVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.+++...+..+... ..+ .++++||+|+||.. +.++|+|+||++++||.+||+|+|||||||+++++.+
T Consensus 319 q~~e~~~~~~~~~~--~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 319 QKPEVTFPDEQTAT--TGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CCcccCCCccccCC--ccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 77665443111111 112 79999999999854 5689999999999999999999999999999998853
No 413
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.92 E-value=2e-24 Score=272.06 Aligned_cols=212 Identities=26% Similarity=0.375 Sum_probs=152.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhcccCCCCc--------EEEE
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIG---------LIERFYDPLKG--------VVKI 746 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~---------lL~rl~~~~~G--------~I~i 746 (930)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++ .|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 578888752 2689999999999999999999999999999 45554322111 2456
Q ss_pred CCccCCCCC----H------HHhh---------c-----ceEEEccC------------------C--------------
Q 040875 747 DGEDIRSYH----L------RSLR---------R-----HVALVSQE------------------P-------------- 770 (930)
Q Consensus 747 dG~di~~~~----~------~~lR---------~-----~i~~V~Q~------------------p-------------- 770 (930)
|-.++..-+ . +++| + ...+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 655554321 1 1444 1 12233342 1
Q ss_pred ------CCCc-ccHHHHhhcCCCCC----CCHHHHHHHHHHhcchhHHhcCccccccc-cCCCCCCCChHHHHHHHHHHH
Q 040875 771 ------ALFA-VTVRENITYGASDK----IDESEIIEAAKAANAHDFIAGLSEGYDTW-CGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 771 ------~LF~-gTIreNl~~g~~~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~-vge~G~~LSgGQrQrlaLARA 838 (930)
+.+. -||.|||.++..+. .+.+++.+.++ .+.. -|++.. .+....+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1222 37888887763210 11233333332 1111 144443 466778999999999999999
Q ss_pred hc---cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEe------CCEEEEecChhH
Q 040875 839 IL---KNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLE------QGRVVEEGSHES 908 (930)
Q Consensus 839 Ll---~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~------~G~ive~G~~~e 908 (930)
|+ ++|++|||||||++||+++.+.+.+.|+++. +|.|||+|+|+++.+..||+|++|+ +|++++.|+|++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 5899999999999998899999996 799999999999
Q ss_pred Hhc
Q 040875 909 LLA 911 (930)
Q Consensus 909 Ll~ 911 (930)
+..
T Consensus 904 l~~ 906 (1809)
T PRK00635 904 LIH 906 (1809)
T ss_pred HHh
Confidence 985
No 414
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.5e-23 Score=224.01 Aligned_cols=302 Identities=18% Similarity=0.209 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHH-HHH
Q 040875 16 EAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYI-VGF 94 (930)
Q Consensus 16 ~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~ 94 (930)
.++.|.-...-..+++--.+++++.+.+.+|+-. . .+||+...|.+-.+.+. .....+..+...+.-...+++ ...
T Consensus 279 RtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~-r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~ 355 (790)
T KOG0056|consen 279 RTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN-R-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFI 355 (790)
T ss_pred heeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec-c-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhh
Confidence 3444533344456677778899999999999884 4 79999999988776665 222222222222221111111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHH
Q 040875 95 MILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLG 174 (930)
Q Consensus 95 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~ 174 (930)
...|+.+|+.+..+.+..-+...+..+-.++++++...-.+--......+-+-.|||-|+.|+.+.++|.+...+-.+..
T Consensus 356 ~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E 435 (790)
T KOG0056|consen 356 KFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQE 435 (790)
T ss_pred hHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHH
Confidence 33455677766666666666666777778888888776666566677889999999999999999999999888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 040875 175 LKQGLCKGFASGINAITYAIWSFL----AYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHI 250 (930)
Q Consensus 175 ~k~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri 250 (930)
.|...--.+ .+.+-..++.++ ..+..+++..+.+|.|+-.-....++.+-.|++.+......+++..+--+++
T Consensus 436 ~ks~~sLnf---LN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnm 512 (790)
T KOG0056|consen 436 WKSLASLNF---LNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENM 512 (790)
T ss_pred HHHHHHHHH---HHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHH
Confidence 664332111 222222222333 2333444567789999966566777888899999999999999999999999
Q ss_pred HHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 251 RDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++.++.++++...+. ..+....+|.|+|+||+|+|+ |.+|+|+||||+++|||++|+|||||+||||++++|+
T Consensus 513 fdllkee~eVvd~P~-a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 513 FDLLKEEPEVVDLPG-APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHhhcCchhhcCCC-CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 999987665432211 112234468899999999995 5678999999999999999999999999999999873
No 415
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=2.5e-23 Score=226.38 Aligned_cols=215 Identities=26% Similarity=0.438 Sum_probs=176.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC-CCCCHHHhh-
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI-RSYHLRSLR- 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di-~~~~~~~lR- 760 (930)
..++++|++..=+ + +.+.+++|||++++||++||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ...+..++|
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4689999998653 2 34578999999999999999999999999999999999999999999999997 677777765
Q ss_pred cceEEEccCCC----CCcccHHHHhhcCCCCC--------CCHHHHHHHHHHhcchhHHhcC---ccccccccCCCCCCC
Q 040875 761 RHVALVSQEPA----LFAVTVRENITYGASDK--------IDESEIIEAAKAANAHDFIAGL---SEGYDTWCGDRGLQL 825 (930)
Q Consensus 761 ~~i~~V~Q~p~----LF~gTIreNl~~g~~~~--------~~d~ei~~al~~~~l~~~i~~L---p~gldt~vge~G~~L 825 (930)
..++|||.|.+ ...-|+.||+.++.... .+..++.+..+. .++.. +.+.+++ -.+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcc----hhhc
Confidence 67999999984 55779999998764311 122333332222 23222 2333333 3589
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
|||+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+|+.+.. ||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999999988775 69999999999999865 999999999999988
Q ss_pred cChhH
Q 040875 904 GSHES 908 (930)
Q Consensus 904 G~~~e 908 (930)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 87775
No 416
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=3e-24 Score=227.99 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=134.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc-C------CCCCHHHhhcceEEEccCC--CCCcccHHHHhh-c
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED-I------RSYHLRSLRRHVALVSQEP--ALFAVTVRENIT-Y 783 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d-i------~~~~~~~lR~~i~~V~Q~p--~LF~gTIreNl~-~ 783 (930)
..++|+||||||||||+.++.++..+..|++..++.+ + ...+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998878888765431 1 1111223344455555654 355555555421 1
Q ss_pred CC-CCCCCHHHHHHHHHHhcchhHHhc--CccccccccCC---------CCCCCChHHHHHHHHHHHhcc----CCCEEE
Q 040875 784 GA-SDKIDESEIIEAAKAANAHDFIAG--LSEGYDTWCGD---------RGLQLSGGQKQRIAIARAILK----NPAVLL 847 (930)
Q Consensus 784 g~-~~~~~d~ei~~al~~~~l~~~i~~--Lp~gldt~vge---------~G~~LSgGQrQrlaLARALl~----~~~ILi 847 (930)
.. ....+.+++.+.++.+++..+... .++|--+.+.+ ...+||+|||||++||||++. +|++++
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11 124577888899999998533211 23333233322 237899999999999999986 489999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhccCEEEEEeC
Q 040875 848 LDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 848 LDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
|||||++||+++...+.+.|++..+ |.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 8999999999998888999999963
No 417
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=2.8e-23 Score=251.84 Aligned_cols=97 Identities=36% Similarity=0.547 Sum_probs=88.5
Q ss_pred cccc-ccCCCCCCCChHHHHHHHHHHHhcc---CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 040875 813 GYDT-WCGDRGLQLSGGQKQRIAIARAILK---NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 813 gldt-~vge~G~~LSgGQrQrlaLARALl~---~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~ 887 (930)
|++. .++....+||||||||++|||||++ +|+++||||||++||+++...+.+.|+++. +|.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3577788999999999999999997 599999999999999999999999999875 5899999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhHH
Q 040875 888 NCDMIAVL------EQGRVVEEGSHESL 909 (930)
Q Consensus 888 ~~DrI~vl------~~G~ive~G~~~eL 909 (930)
.||+|++| ++|+|++.|+|+++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999986
No 418
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.8e-23 Score=198.68 Aligned_cols=228 Identities=24% Similarity=0.337 Sum_probs=179.4
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CCcEEEECCccCCCCCHHHh
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP----LKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~l 759 (930)
+.++|++..+.... ...+.+++|++...||.-|+||+||||||-++++++|..+. +.-+.++|++|+-+++..+.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 34555555553221 23478999999999999999999999999999999998764 46677889999999999988
Q ss_pred hc----ceEEEccCCCCCcc---c----HHHHhhcCCC-C------CCCHHHHHHHHHHhcchhHHhcCccccccccCCC
Q 040875 760 RR----HVALVSQEPALFAV---T----VRENITYGAS-D------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR 821 (930)
Q Consensus 760 R~----~i~~V~Q~p~LF~g---T----IreNl~~g~~-~------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~ 821 (930)
|+ .|++|+|||.-.-+ + +-+||-.... + .....+-.+.|.++|++|.-+-+ ...
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--------~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--------RSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--------HhC
Confidence 85 47899999964322 2 3345521111 0 12334556778889987653211 234
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
+..|--||-|.+.||-|+..+|++||-||||.++|+-|..+|.+.+.+.. ++.|++.|+|++.++.. ||+|-||--|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 66788899999999999999999999999999999999999999998765 47899999999999976 9999999999
Q ss_pred EEEEecChhHHhccCCCcHHHHH
Q 040875 899 RVVEEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 899 ~ive~G~~~eLl~~~~~g~y~~l 921 (930)
+-+|.+.-++|++. +...|-+-
T Consensus 236 Q~~ESa~~e~l~~~-PhHPYTqA 257 (330)
T COG4170 236 QTVESAPSEELVTM-PHHPYTQA 257 (330)
T ss_pred ccccccchhHHhcC-CCCchHHH
Confidence 99999999999985 77777653
No 419
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.7e-22 Score=206.28 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=119.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE--CCc---cCCCCCHHHhhcceEEEccCCCCCcccH
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI--DGE---DIRSYHLRSLRRHVALVSQEPALFAVTV 777 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i--dG~---di~~~~~~~lR~~i~~V~Q~p~LF~gTI 777 (930)
++++++++.+| ..+|+|+||||||||+.+|.-... |+... .|. ++-..+ .-...+.+.+|++-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCC--CCeEEEEEEEEcCCccC---
Confidence 36777888777 678999999999999999874332 22211 122 221111 12456888998876655
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh----ccCCCEEEeeccCC
Q 040875 778 RENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI----LKNPAVLLLDEATS 853 (930)
Q Consensus 778 reNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL----l~~~~ILiLDEaTS 853 (930)
| +....+.+++.++++. .+. ..+...+||+|||||++||||+ +.+|+++||||||+
T Consensus 83 --~----~~~~~~~~~~~~~l~~----------~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 83 --N----PLCVLSQDMARSFLTS----------NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred --C----cCCHHHHHHHHHHhcc----------ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 2 1111122333333333 111 2245678999999999999999 69999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC----CCeEEEEccCchhhhccCEEEEEeCC
Q 040875 854 ALDSQSEKLVQEALERLMV----GRTSVVVAHRLSTIQNCDMIAVLEQG 898 (930)
Q Consensus 854 aLD~~te~~i~~~i~~~~~----~~TvI~IaHrl~ti~~~DrI~vl~~G 898 (930)
+||..+...+.+.|++..+ ++|+|+++|+++.+.++|+|-||..|
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 9999999999999988642 35899999999999999999999864
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=209.08 Aligned_cols=169 Identities=28% Similarity=0.445 Sum_probs=132.8
Q ss_pred eeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCC-CCCccc
Q 040875 703 FKGFSINIE-----AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEP-ALFAVT 776 (930)
Q Consensus 703 L~~vsl~i~-----~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p-~LF~gT 776 (930)
+.+..|++. .||.++++||||-||||++++|+|..+|++|+ ..++ +++|=||-- .-|.||
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gt 417 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGT 417 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCc
Confidence 456666655 57899999999999999999999999999998 3333 599999933 238999
Q ss_pred HHHHhhcCCCCCCCHHHHH-HHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCC
Q 040875 777 VRENITYGASDKIDESEII-EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855 (930)
Q Consensus 777 IreNl~~g~~~~~~d~ei~-~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaL 855 (930)
|++=+.-..+....+...+ +.++-.++++.+ |. .-.+|||||.||+|||-||.|++++++||||+|-|
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-------e~----~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-------ER----PVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHHH-------hc----ccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 9988753322223333332 344444554433 22 34579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEe
Q 040875 856 DSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 856 D~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
|.+..-.+.++|++.. .++|.++|-|++-.+.. +||++|.+
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999989999999865 48999999999999876 99999996
No 421
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.86 E-value=1.1e-18 Score=187.74 Aligned_cols=271 Identities=22% Similarity=0.389 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 364 LGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNML 443 (930)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (930)
++.++.++.+...+..+...+.+++.....+.. .......+...++++.++.........+...+.+.+...++|.+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777788888888763322111 1111222222233333444444455555567889999999999999
Q ss_pred HHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 444 SKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLY 523 (930)
Q Consensus 444 ~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~ 523 (930)
+++++.|.++|+ ++++|++.+|+++|++.+++.+...+..++..+...++.+++++..+|+++++.++..|+..+...
T Consensus 82 ~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999997 789999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 524 GKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVV 603 (930)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (930)
...+..++..++..+..++..+.+.|.++|+++||+|+.|+++.+++++..++..+...+..............+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhCccCHHHHHHHHHHHHHHHHH
Q 040875 604 ALAFWYGGRL-VARGYINAKSLFEIFLVLVSTGKV 637 (930)
Q Consensus 604 ~~~~~~g~~l-~~~g~~~~g~~~~~~~~~~~~~~~ 637 (930)
.+++++|+.+ +..|.+++|.++.++.+......|
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999888777665554
No 422
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=1.7e-21 Score=212.62 Aligned_cols=216 Identities=24% Similarity=0.389 Sum_probs=146.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC--CccCCCCCHHHhh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID--GEDIRSYHLRSLR 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id--G~di~~~~~~~lR 760 (930)
..|.++|++++|++. ++++|++|++.+|+++||+|+|||||||+++++.+-..|..-++-+- ..++ ....+.
T Consensus 74 ~dvk~~sls~s~~g~---~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~---~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV---ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI---EPSEKQ 147 (614)
T ss_pred ccceeeeeeeccCCc---eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC---CCchHH
Confidence 479999999999743 58999999999999999999999999999999999888854443211 1111 111100
Q ss_pred cceEEEccCCCCCcccHH-------HHhhcCCC--CCCCHHHHHHHHHHhcchhHHhc----C-cccccccc-CCCCCCC
Q 040875 761 RHVALVSQEPALFAVTVR-------ENITYGAS--DKIDESEIIEAAKAANAHDFIAG----L-SEGYDTWC-GDRGLQL 825 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~gTIr-------eNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~----L-p~gldt~v-ge~G~~L 825 (930)
.+ |.-+.+..+-| |++.-..+ +...-+++++-+...+...+=.+ | ..|..... ...-.+|
T Consensus 148 -av----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 148 -AV----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred -HH----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 00 00111222222 22211101 00111234444444433322111 1 11333222 2334689
Q ss_pred ChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCC-eEEEEccCchhhhc-cCEEEEEeCCE-EEE
Q 040875 826 SGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGR-TSVVVAHRLSTIQN-CDMIAVLEQGR-VVE 902 (930)
Q Consensus 826 SgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~-TvI~IaHrl~ti~~-~DrI~vl~~G~-ive 902 (930)
|||||-|++|||||+.+|++|+|||||.+||.++..-+.+.|.+. ++ |+++++|.-+++.. |..|+-|++++ +.-
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999999999999999999999999999999999999888888765 44 89999999999986 99999999999 566
Q ss_pred ecChhHHhc
Q 040875 903 EGSHESLLA 911 (930)
Q Consensus 903 ~G~~~eLl~ 911 (930)
.|++++...
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 788887765
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.9e-21 Score=203.75 Aligned_cols=193 Identities=29% Similarity=0.383 Sum_probs=149.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..+-+.||+|.||+. .|.+++++|-|.--.+||||||+|.|||||+++|.|-++|+.|+.+=+ .|-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence 467899999999864 468999999999999999999999999999999999999999987543 2457
Q ss_pred eEEEccCCC--C-CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 763 VALVSQEPA--L-FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 763 i~~V~Q~p~--L-F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
|++-.|..- | -..|-.|-|.-+ -+.+-++-+.+|-..||...- .|. .-..||||||-|+++|---
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELA 719 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHh
Confidence 888888652 1 123444444322 134556666777666663321 121 2357999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccC-EEEEEeCCEEEE
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCD-MIAVLEQGRVVE 902 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~D-rI~vl~~G~ive 902 (930)
++.|+||||||||.+||.++-..+-++|++. .-.||+|+|+-..|...| ..+|+++-.|-|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 9999999999999999999999999999876 457999999999987644 456666655544
No 424
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.8e-21 Score=209.82 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=140.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc--CCCCCHHHhh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED--IRSYHLRSLR 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d--i~~~~~~~lR 760 (930)
.+|..+|.+.+|.+ ...|++-++++..|.+.|+|||||+|||||+++|.. |+|.+-.++ ++......+
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~- 148 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL- 148 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-
Confidence 57999999999964 358999999999999999999999999999999987 443322211 111111111
Q ss_pred cceEEEccCCCCCcccHHHHhhcCCC---CCCCHHHHHH-HHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 761 RHVALVSQEPALFAVTVRENITYGAS---DKIDESEIIE-AAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~gTIreNl~~g~~---~~~~d~ei~~-al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
...+=++|-|.-+....+ ...+.+|+.. +|...|..+-....| -..||||=|=|++||
T Consensus 149 --------~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLA 210 (582)
T KOG0062|consen 149 --------QSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALA 210 (582)
T ss_pred --------hhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHH
Confidence 012334444444432211 0113345554 555555555444333 247999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
|||+.+|+||+|||||..||..+-.-+.+-|.++ ..|+|+|+|+-+++.. |.-|+.+++=|+- ..|++++..+
T Consensus 211 RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 211 RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 9999999999999999999999998888888776 4899999999999976 8889888875543 2355555443
No 425
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=2e-20 Score=187.43 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=77.0
Q ss_pred HhcCccccccccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEcc
Q 040875 807 IAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAH 881 (930)
Q Consensus 807 i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaH 881 (930)
+.-+|+|-.|++ ||+|||||++|||++. ++|+++++||||++||+++.+.+.+.+++..+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456788877776 9999999999999995 79999999999999999999999999988754 699999999
Q ss_pred CchhhhccCEEEEEeC
Q 040875 882 RLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 882 rl~ti~~~DrI~vl~~ 897 (930)
+++.+..+|+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 426
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.83 E-value=2.5e-18 Score=186.96 Aligned_cols=297 Identities=19% Similarity=0.219 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 040875 16 EAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEK-LPNFLVNVAIFFGSYIVGF 94 (930)
Q Consensus 16 ~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~ 94 (930)
........|++.-.++...++.+.++....-.... ...+. =+|.+.++.++... ...++-.-|+.+.. +++|
T Consensus 83 R~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g--~~~Q~----LrDL~qvR~Fltg~g~~A~fDaPW~P~yl-~v~f 155 (580)
T COG4618 83 RSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSG--DGLQP----LRDLDQVRQFLTGTGLTAFFDAPWMPLYL-AVIF 155 (580)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCC--ccccc----hhhHHHHHHHHcCCCcchhcCCchHHHHH-HHHH
Confidence 33335556777777777777777764433211100 11222 35888888887653 34444445544433 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHH
Q 040875 95 MILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLG 174 (930)
Q Consensus 95 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~ 174 (930)
.+-.++.+..++...+++.+.++-.+..++-.++..+...+|...++-...+..+|++.|..+...+++.+...+.++.-
T Consensus 156 l~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~ 235 (580)
T COG4618 156 LFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQ 235 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444455556667777888899999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHH
Q 040875 175 LKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGG--QALGAGLSNFKYISEAASAGEHIR 251 (930)
Q Consensus 175 ~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~--~~l~~~~~~~~~~~~a~~a~~ri~ 251 (930)
.+.+-..+...+ ...+=..+-+.+.=.|.+++..+++|+|.++. .++++++ .|+-.....-..+..|+.|.+|+.
T Consensus 236 ~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA--~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~ 313 (580)
T COG4618 236 ERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIA--GSILSGRALAPIDLAIANWKQFVAARQSYKRLN 313 (580)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhH--HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665554444 33322233333344578888899999998865 3344443 455556666688899999999999
Q ss_pred HHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 252 DVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|...|..+ +.-+.+++++.+.++++++.=| ..++|+|+|+||++++|+.++||||||||||||.++|.
T Consensus 314 ~lL~~~p~~~----~~m~LP~P~g~L~Ve~l~~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 314 ELLAELPAAA----ERMPLPAPQGALSVERLTAAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred HHHHhCcccc----CCCCCCCCCceeeEeeeeecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence 9997654322 2233456678999999999754 45689999999999999999999999999999999985
No 427
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.6e-18 Score=179.43 Aligned_cols=306 Identities=15% Similarity=0.192 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHH
Q 040875 10 WIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGS 89 (930)
Q Consensus 10 ~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (930)
++.+.+......+.|+....++|+.+.++++.-++.-++. - +++.+...+..|+..|--+. ...+...+....++++
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~-~~~rlla~L~~Dvr~ISf~~-s~lp~~~qa~il~l~s 138 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-L-GSARLLAGLTSDVRNISFAF-SRLPELVQAIILTLGS 138 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-h-cccchhhhhcccccceeehH-hhhHHHHHHHHHHHHH
Confidence 3445555566788899999999999999999988754452 3 78999999999999987444 4566677777766766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHH--HHHHHHHHH
Q 040875 90 YIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGK--TLDEFSSAL 167 (930)
Q Consensus 90 ~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~--~~~~~~~~r 167 (930)
.....|++.+..++++..+++.+..+++......++.....+..|+--+..+-++.|-|-.+.+.=-.. +.+.|..--
T Consensus 139 ~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a 218 (546)
T COG4615 139 AAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDA 218 (546)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcch
Confidence 666667777777888888888888888888888888888888889999999999999999888753222 223333222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040875 168 QGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASA 246 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a 246 (930)
++..++..+...+.-...- .+.+.+.....+||....+.- -+.....|...++..++.|+.++...+..+..|.+|
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA 295 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVA 295 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 2222232232222111111 445667777778886544321 112234444455666788999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 247 GEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 247 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++||.++-..++.-+ -...+..++. ..+|++||.|+|+.. ...+..||++|++||+|.++|..||||||++++|.
T Consensus 296 ~~kiakle~~~~~a~--~~~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 296 FNKIAKLELAPYKAD--FPRPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred HHHHHHhhcCCcccc--CCCCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHh
Confidence 999998754322111 1111111222 359999999999753 36788999999999999999999999999999875
No 428
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-18 Score=185.28 Aligned_cols=300 Identities=20% Similarity=0.196 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 040875 22 RTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVN-VAIFFGSYIVGFMILWQL 100 (930)
Q Consensus 22 ~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~ 100 (930)
-.+......+--.-+.++.+.++.|+-. . .+|.+.-.+..-...|.......+...+.. +.......+..+.++|+.
T Consensus 8 ~v~q~a~r~la~~~F~h~~~Lsl~fHl~-r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f 85 (497)
T COG5265 8 PVGQIAVRVLAYVTFFHLHSLSLRFHLE-R-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWF 85 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhh-c-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHH
Confidence 3444444455556677777778877663 4 678877777666555544433222222222 223444556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 101 VVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLC 180 (930)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~~~~ 180 (930)
+++.+.++.+.+........+-..+++++.+...++....-++|-+-.+||.|+-|+.+.++|....+.-.+...|...-
T Consensus 86 ~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~S 165 (497)
T COG5265 86 ALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVS 165 (497)
T ss_pred HHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHH
Confidence 88888887777777777777778889999998889999999999999999999999999999998888877666664432
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Q 040875 181 KGFA-SGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIRDVIKRVPD 259 (930)
Q Consensus 181 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~ 259 (930)
.++. .+-..+...........+...+..+.+|.|+..-.-........|++.+......+.+++.-.++.++.++.+.+
T Consensus 166 l~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~ 245 (497)
T COG5265 166 LLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAE 245 (497)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchh
Confidence 2221 211111111112222334444567889999987777888888899999999999999999999999888865443
Q ss_pred CCCCCcc-CCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 260 IDSENME-GETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 260 ~~~~~~~-~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.....+. ...| ...+.|.|+||+|.|. |..|+|+++|+++++|+++++|||||+||||++.+|+
T Consensus 246 v~d~pda~~L~~-~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf 310 (497)
T COG5265 246 VSDAPDAPPLWP-VRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF 310 (497)
T ss_pred hccCCCCccccc-cccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH
Confidence 3222111 1111 3347899999999995 4578999999999999999999999999999999883
No 429
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.82 E-value=2.4e-20 Score=195.28 Aligned_cols=197 Identities=22% Similarity=0.270 Sum_probs=140.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc--EEEECCccCCCCCHHHhhcce--EEEccCCCCCcccHHHHhhc
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG--VVKIDGEDIRSYHLRSLRRHV--ALVSQEPALFAVTVRENITY 783 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G--~I~idG~di~~~~~~~lR~~i--~~V~Q~p~LF~gTIreNl~~ 783 (930)
+.+.+||+++|+|++|+|||||++.+.+..+...+ .+++-...-+..+..++.+.+ .+|-.+- ..+-...+.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~- 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQ- 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHH-
Confidence 58899999999999999999999999998877533 333333332335566665554 0000000 000000000
Q ss_pred CCCCCCCHHHHHHHHH---Hhc-----chhHHhcCccccccccCCCCCCCChHH--------HHHHHHHHHhccCCCEEE
Q 040875 784 GASDKIDESEIIEAAK---AAN-----AHDFIAGLSEGYDTWCGDRGLQLSGGQ--------KQRIAIARAILKNPAVLL 847 (930)
Q Consensus 784 g~~~~~~d~ei~~al~---~~~-----l~~~i~~Lp~gldt~vge~G~~LSgGQ--------rQrlaLARALl~~~~ILi 847 (930)
.-..+.+.++ ..| +-|-+.+++.++++.+++.|.++|||| |||+++||+++++++|.+
T Consensus 87 ------~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 87 ------VAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred ------HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 0001111111 111 224467899999999999999999999 999999999999999999
Q ss_pred eeccCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHh
Q 040875 848 LDEATSALDSQSEKL-VQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQ 925 (930)
Q Consensus 848 LDEaTSaLD~~te~~-i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~ 925 (930)
| ||+++|..+|.. ++ +.+.. .++|.|+++||+.+..++|.|.||++|++ |++|+. .++.|+.++..+
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~--~~~~~~~~~~~r 229 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLL--DPEELQRMWLLR 229 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhC--CHHHHHHHHHHH
Confidence 9 999999876653 43 34443 57999999999999999999999999997 889996 567888886644
No 430
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.82 E-value=5.1e-18 Score=182.59 Aligned_cols=208 Identities=25% Similarity=0.371 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 21 TRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVGFMILWQL 100 (930)
Q Consensus 21 ~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 100 (930)
...+.+...++|..+++++++.+.++++. . ++|++.|++++|++.+++.+...+..++.++..+++.+++.++.+|.+
T Consensus 66 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 143 (275)
T PF00664_consen 66 SRISQRIRKDLRKRLFEKLLRLPYSYFDK-N-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKL 143 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhh-h-cccccccccccccccccccccccccccccccchhhhhhhccccccccc
Confidence 45677888888888899999989998884 5 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 101 VVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGSVKLGLKQGLC 180 (930)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e~~~~~k~~~~ 180 (930)
+++.+.+.|+..++...+.++..+..++..+..+++.+.++|.++|+|+||.|++|+.+.+++++..++..+...|....
T Consensus 144 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 223 (275)
T PF00664_consen 144 ALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKI 223 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-HhcccCCcchHHHHHHHHHHHHHHH
Q 040875 181 KGFASG-INAITYAIWSFLAYYGSRL-VMYHGAKGGAVFAAGTTIVVGGQAL 230 (930)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vft~~~~~~~~~~~l 230 (930)
.+...+ ..++......+.+++|..+ +..|.+++|++++++..+.....|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 224 QALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 877776 5566666678888899998 8889999999999888887776664
No 431
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.9e-19 Score=194.28 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 824 QLSGGQKQRIAIARAILK----NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~----~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
.|||||+||++|||+++. +|++++|||||++||+++...+.+.+++..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997654 9999999999999999999999999998878899999999999888899999998864
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=184.26 Aligned_cols=198 Identities=28% Similarity=0.448 Sum_probs=154.4
Q ss_pred CCccEEEEEEEEEcCCCC-----------------------CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc-
Q 040875 681 ITGHIELQYVHFAYPARP-----------------------DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF- 736 (930)
Q Consensus 681 ~~g~I~~~nvsf~Y~~~~-----------------------~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl- 736 (930)
..+.+.|+|++-.|.+.- ..++|+|+||+|+||+.++|||+|||||||++++++|.
T Consensus 354 L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 354 LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 346688888877663210 12589999999999999999999999999999999986
Q ss_pred -------cCCCCcEEEECCccCCCCCHHHhhcceEEEcc--CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHH
Q 040875 737 -------YDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQ--EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFI 807 (930)
Q Consensus 737 -------~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q--~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i 807 (930)
|.|++|.|.+--..+ -+.+|- ||.+=.-||-|.+. .. .-|-.--.++|+++|+.|-+
T Consensus 434 ~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep~f~~~tilehl~--s~-tGD~~~AveILnraGlsDAv 499 (593)
T COG2401 434 KGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEPEFGEVTILEHLR--SK-TGDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hcccccccCCCCCceeccccch-----------hhccCcccccccCchhHHHHHh--hc-cCchhHHHHHHHhhccchhh
Confidence 568899887633212 244554 56654558888873 21 22323446788899988765
Q ss_pred hcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchh
Q 040875 808 AGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLST 885 (930)
Q Consensus 808 ~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~t 885 (930)
. +. ..-..||-|||-|.-||+++..+|.+++.||.-|.||+.|...|.+.|.++. .+.|.++||||.+.
T Consensus 500 l-----yR----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 L-----YR----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred h-----hh----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 3 11 2345799999999999999999999999999999999999999999998887 59999999999999
Q ss_pred hhc--cCEEEEEeCCEEE
Q 040875 886 IQN--CDMIAVLEQGRVV 901 (930)
Q Consensus 886 i~~--~DrI~vl~~G~iv 901 (930)
+.. -|+++.+.=|++.
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 864 5999988777654
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.3e-19 Score=202.32 Aligned_cols=99 Identities=33% Similarity=0.525 Sum_probs=90.1
Q ss_pred cccc-ccCCCCCCCChHHHHHHHHHHHhccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh
Q 040875 813 GYDT-WCGDRGLQLSGGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 813 gldt-~vge~G~~LSgGQrQrlaLARALl~~~---~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~ 887 (930)
||.. .+|..-..|||||.|||-||.-|.+++ -++||||||.+|-.+--+.+++.|.++- +|.|||+|-|.|+.|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 5543 357888999999999999999999998 8999999999999988888889988875 6999999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhc
Q 040875 888 NCDMIAVL------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 888 ~~DrI~vl------~~G~ive~G~~~eLl~ 911 (930)
.||.|+-| +.|+||..|||+|+.+
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999 4689999999999997
No 434
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=3.4e-19 Score=183.92 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=111.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhh------cceEEEccCCCCCccc-
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLR------RHVALVSQEPALFAVT- 776 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR------~~i~~V~Q~p~LF~gT- 776 (930)
+++.+++.+| ...|+|+||||||||+.+|.-..-.... ..+ +.-...++. ..+-+..+..- +.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~---~~~---r~~~~~~~i~~g~~~~~v~~~~~~~~---~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPK---LLG---RAKKVGEFVKRGCDEGTIEIELYGNP---GNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcc---ccc---cccCHHHHhhCCCCcEEEEEEEEeCC---Ccc
Confidence 4455555554 5589999999999999998655421110 000 001111211 11222221110 00
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH----hccCCCEEEeeccC
Q 040875 777 VRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA----ILKNPAVLLLDEAT 852 (930)
Q Consensus 777 IreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA----Ll~~~~ILiLDEaT 852 (930)
..+|+++ -.+.+.+.++...... |.+..+|.+.+.. ..++..||+|||||+.+|++ ++.+|+++++||||
T Consensus 85 ~~~n~~~----~~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 85 QVDNLCQ----FLPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ccCCceE----EEchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 1223321 1233444454444333 4455666554432 44678999999999887754 46899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC--C-CeEEEEccCchhhh-ccC--EEEEEeCCE
Q 040875 853 SALDSQSEKLVQEALERLMV--G-RTSVVVAHRLSTIQ-NCD--MIAVLEQGR 899 (930)
Q Consensus 853 SaLD~~te~~i~~~i~~~~~--~-~TvI~IaHrl~ti~-~~D--rI~vl~~G~ 899 (930)
++||+.+.+.+.+.+++..+ + .|+|+|||++..+. .|| +|++|++|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988753 4 47999999986654 455 788888876
No 435
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=2.6e-19 Score=184.00 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=107.6
Q ss_pred eeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------cccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCC
Q 040875 703 FKGFSINIEAEK-STALVGQSGSGKSTIIGLIE--------RFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALF 773 (930)
Q Consensus 703 L~~vsl~i~~Ge-~vaIVG~sGsGKSTL~~lL~--------rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF 773 (930)
..++|+++.+|+ +++|+||||||||||++.+. |++-|....+ .+++.+|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 358899999996 59999999999999999988 5444432111 1333333311
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC
Q 040875 774 AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS 853 (930)
Q Consensus 774 ~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS 853 (930)
.+ +. +..+.++-..+|+|+||+..|++++ .+|+++++||||+
T Consensus 78 ------~l--g~-----------------------------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 ------DI--GD-----------------------------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred ------ec--Cc-----------------------------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 00 10 0011123358999999999999985 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEec
Q 040875 854 ALDSQSEKLVQ-EALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 854 aLD~~te~~i~-~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 904 (930)
++|+++...+. ..+++.. .++|+|++||+.+....||++++|++|++...+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999888774 4566554 489999999997766779999999999997663
No 436
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.3e-18 Score=167.37 Aligned_cols=210 Identities=25% Similarity=0.296 Sum_probs=151.9
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC-CCHHHhh
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS-YHLRSLR 760 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~-~~~~~lR 760 (930)
...|++.++.|+|+.. + |..-|+|+++|+|.++-+||.||||||||+++|.|-.-...|.|.+.|.+-=. -++.+ -
T Consensus 11 ~~aievsgl~f~y~~~-d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~-S 87 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-D-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES-S 87 (291)
T ss_pred cceEEEeccEEecccC-C-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc-c
Confidence 3689999999999864 3 68899999999999999999999999999999999877777999999986421 11111 1
Q ss_pred cceEEEccCC---CCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHH--hcCccccccccCCCCCCCChHHHHHHHH
Q 040875 761 RHVALVSQEP---ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFI--AGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 761 ~~i~~V~Q~p---~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i--~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
...+|..-+= ..++|- + ....+.+-++ .+.-++-.++. +.|-+=||-.+.-+-..+|-|||+|+-|
T Consensus 88 gdl~YLGgeW~~~~~~age----v--plq~D~sae~---mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQi 158 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGE----V--PLQGDISAEH---MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQI 158 (291)
T ss_pred CceeEeccccccccccccc----c--cccccccHHH---HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHH
Confidence 1133332211 111110 0 0000111111 11122221111 1122234555556677899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEe
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 903 (930)
+-.|++.=++|+|||-|--||.-...-+.+-+++.. +|+|++..||=.+-+.. ..+++.|.+|+++..
T Consensus 159 cMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 159 CMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred HHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 999999999999999999999999999999998875 59999999999998876 899999999999983
No 437
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=8.9e-19 Score=210.23 Aligned_cols=202 Identities=27% Similarity=0.444 Sum_probs=168.6
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCCCHHHhhcceEEEccCCCCC-cc
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSYHLRSLRRHVALVSQEPALF-AV 775 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF-~g 775 (930)
..+|+|+|.-++|||.+-+.||.|||||||+++|.|-.+-. .|+|.+||.|.+++-. ++.++|++|+...| .-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 35899999999999999999999999999999999987642 5799999999998876 88899999988666 57
Q ss_pred cHHHHhhcCCC-----C---CCCHHHHH-----HHHHHhcchhHHhcCccccccccCCC-CCCCChHHHHHHHHHHHhcc
Q 040875 776 TVRENITYGAS-----D---KIDESEII-----EAAKAANAHDFIAGLSEGYDTWCGDR-GLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 776 TIreNl~~g~~-----~---~~~d~ei~-----~al~~~~l~~~i~~Lp~gldt~vge~-G~~LSgGQrQrlaLARALl~ 841 (930)
||||-|.|... . +.++.|-. .+++.. .|....||.||++ ....|||||.|+.+|-+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~ 277 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG 277 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeec
Confidence 99999976421 1 22333322 223333 5566899999977 56799999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCch--hhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLS--TIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~--ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
+++++.+||+|-+||+.|.-++.++|++..+ +.|.++.=|..+ +..-.|+|++|.+|+++-+|+.++.+.
T Consensus 278 ~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 278 PASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred CcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999999999998753 788888777664 456699999999999999999988864
No 438
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=6.4e-18 Score=213.86 Aligned_cols=213 Identities=21% Similarity=0.279 Sum_probs=145.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh------cc---cCCCCcEEEECCccCCCCC----------HHHhhcce
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIE------RF---YDPLKGVVKIDGEDIRSYH----------LRSLRRHV 763 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~------rl---~~~~~G~I~idG~di~~~~----------~~~lR~~i 763 (930)
|||++++||-|..++|.|.||||||||++-.+ .+ .+.-+--|.||-.+|..-+ .+++|+-.
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 79999999999999999999999999997443 11 1223345788877775432 34456555
Q ss_pred EEEcc------CCCCCcc--------------cHHHHhhcCCC----------CCCCHH------------H-----HHH
Q 040875 764 ALVSQ------EPALFAV--------------TVRENITYGAS----------DKIDES------------E-----IIE 796 (930)
Q Consensus 764 ~~V~Q------~p~LF~g--------------TIreNl~~g~~----------~~~~d~------------e-----i~~ 796 (930)
+=.|+ .|-.|+- .|+-++.|-++ ..+.+| | +.+
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 54333 2323321 12222222110 001111 1 122
Q ss_pred HHHHhc----ch---hHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEeeccCCCCCHHHHHHHHHH
Q 040875 797 AAKAAN----AH---DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN---PAVLLLDEATSALDSQSEKLVQEA 866 (930)
Q Consensus 797 al~~~~----l~---~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~---~~ILiLDEaTSaLD~~te~~i~~~ 866 (930)
|++-.. +. +.+..+.-||= .+|..-..|||||.|||-||+-|.++ +.++||||||.+|+++.-+.+.+.
T Consensus 1666 a~~~F~~~~~i~~~L~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1666 VAETFPFLKKIQKPLQALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHhhccHHHHHHHHHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 222210 00 01112222332 25788889999999999999999976 689999999999999988888899
Q ss_pred HHHHc-CCCeEEEEccCchhhhccCEEEEE------eCCEEEEecChhHHhccCCCcH
Q 040875 867 LERLM-VGRTSVVVAHRLSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGPAGA 917 (930)
Q Consensus 867 i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~~g~ 917 (930)
++++. +|.|||+|-|+++.++.||.|+-| +.|+|+..|||+|+.+. +++.
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~-~~S~ 1801 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS-KDSL 1801 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhC-CCCc
Confidence 88875 599999999999999999999999 46899999999999973 5543
No 439
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=5.7e-18 Score=167.72 Aligned_cols=73 Identities=26% Similarity=0.397 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHhcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhccCEEEEEeC
Q 040875 825 LSGGQKQRIAIARAILK----NPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 825 LSgGQrQrlaLARALl~----~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
||+||+||++|||+|.. +|+++++|||++++|++....+.+.+.+..+ ++|+|++||+++....+|+++.|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999986 7899999999999999999999999987653 6899999999999999999999964
No 440
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=6.3e-18 Score=180.88 Aligned_cols=188 Identities=23% Similarity=0.338 Sum_probs=134.7
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc-----CCCCCHHHh----
Q 040875 689 YVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED-----IRSYHLRSL---- 759 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d-----i~~~~~~~l---- 759 (930)
++..+|..+ --.|.++- ..++|+.+||+|+||-||||-++.|.|-..|+=|+- |+-+ |+.+.-.+|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 467788432 22233332 456899999999999999999999999999987752 3311 111111111
Q ss_pred --------h--cceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 760 --------R--RHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 760 --------R--~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
| .++.||--=|-.+.|+++|=|.--+. . ....++.++.+|.+.++ ..-.+|||||
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-~---g~~devve~l~L~nvl~-----------r~v~~LSGGE 218 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-R---GKFDEVVERLGLENVLD-----------RDVSELSGGE 218 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-c---CcHHHHHHHhcchhhhh-----------hhhhhcCchH
Confidence 1 12334444566788888887742211 1 12344455555544432 3456899999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEe
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
-||+|||-|++|+++++++|||||-||....-.+.+.|+++.+ +++||+|-|+|..+.. +|-|-++-
T Consensus 219 LQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 219 LQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999899999999987 7999999999999876 89887773
No 441
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=1.9e-17 Score=171.92 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=111.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE-EEccCCCCCcccHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA-LVSQEPALFAVTVR 778 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Q~p~LF~gTIr 778 (930)
..+.+|+++++++|+.++|.|||||||||+++.+.- -.+..+++ +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 358899999999999999999999999999999872 12334455 6776642111 11
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh--ccCCCEEEeecc---CC
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI--LKNPAVLLLDEA---TS 853 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL--l~~~~ILiLDEa---TS 853 (930)
+ +.++..++.|.. ..++|.|++|+..+|+++ +.+|+++||||| |+
T Consensus 74 ~----------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 74 D----------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred c----------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1 112222222111 247999999999999999 999999999999 99
Q ss_pred CCCHHHHHH-HHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 854 ALDSQSEKL-VQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 854 aLD~~te~~-i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
++|...... +.+.+.+ ..++|+|++||..+....||++..+++|++...++
T Consensus 124 ~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999986653 3344443 24899999999755555699999999999987654
No 442
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.1e-16 Score=172.18 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=118.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----------------------------------------CC
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-----------------------------------------LK 741 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-----------------------------------------~~ 741 (930)
+++.++++.+| ..+|+|+|||||||++.+|.=+... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 35567777776 5789999999999998886433210 11
Q ss_pred cEEEECCccCCC-CCHHHhhcceEEEccCCCCCcccHHHHhhcCCC--CCCCH------HHHHHHHHHhcchhHHhcCcc
Q 040875 742 GVVKIDGEDIRS-YHLRSLRRHVALVSQEPALFAVTVRENITYGAS--DKIDE------SEIIEAAKAANAHDFIAGLSE 812 (930)
Q Consensus 742 G~I~idG~di~~-~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~--~~~~d------~ei~~al~~~~l~~~i~~Lp~ 812 (930)
..+.+||..++. -++..+-..+.+.|++..|+.++-.+-..+-+. ..... ++..+++++-+ +.. +-|.
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~--~~~-~g~~ 167 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRN--ALL-KGPH 167 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HHh-CCCC
Confidence 145577776655 223333455677777778885543333322110 01111 11222222111 111 1233
Q ss_pred ccccccCCC----CCCCChHHHHHHHHHHHhc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 040875 813 GYDTWCGDR----GLQLSGGQKQRIAIARAIL---------KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVV 879 (930)
Q Consensus 813 gldt~vge~----G~~LSgGQrQrlaLARALl---------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~I 879 (930)
.-|..+.-+ -..+|+||||+++|||+|+ ++|++++|||||++||+.....+.+.+++. +.+ +++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~q~-ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--VQT-FVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--CCE-EEE
Confidence 333322212 2348999999999999984 899999999999999999999999998765 244 455
Q ss_pred ccCchhhhc-c---CEEEEEeCCEE
Q 040875 880 AHRLSTIQN-C---DMIAVLEQGRV 900 (930)
Q Consensus 880 aHrl~ti~~-~---DrI~vl~~G~i 900 (930)
+|+...+.+ | ++|+.+++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 555444443 5 78999999986
No 443
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.67 E-value=1.6e-16 Score=193.83 Aligned_cols=94 Identities=32% Similarity=0.468 Sum_probs=87.4
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEE
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
......+|||||||||+|||||..+| +++||||||++||++....+.+.|+++. +|.|||+|+|+++.+..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 34567799999999999999999997 9999999999999999999999999875 48999999999999989999999
Q ss_pred E------eCCEEEEecChhHHhc
Q 040875 895 L------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 895 l------~~G~ive~G~~~eLl~ 911 (930)
| ++|+|+..|+++++++
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhc
Confidence 9 9999999999999975
No 444
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.67 E-value=4.8e-17 Score=145.29 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=71.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVREN 780 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreN 780 (930)
++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++..+++||+ +|.+|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 5899999999999999999999999999999986 89999999999999999999999999999 999999999
Q ss_pred hhc
Q 040875 781 ITY 783 (930)
Q Consensus 781 l~~ 783 (930)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 976
No 445
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.64 E-value=3.9e-16 Score=160.76 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=102.8
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc-CCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhc
Q 040875 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFY-DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITY 783 (930)
Q Consensus 705 ~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~ 783 (930)
..++++.+|++++|+|+|||||||+++.+.+.. .+..|...- ..+.++++..|.-..|
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~---------- 79 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRI---------- 79 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEe----------
Confidence 345566689999999999999999999998432 222221100 0011222222111111
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHH
Q 040875 784 GASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLV 863 (930)
Q Consensus 784 g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i 863 (930)
+. +-.+.++-..++.+++| +..+.+++.+|+++|+||||+++|+.....+
T Consensus 80 ---------------------------~~--~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 80 ---------------------------GA--EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred ---------------------------cC--cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 00 00111233467777776 6666777899999999999999999877655
Q ss_pred HH-HHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHH
Q 040875 864 QE-ALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 864 ~~-~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 909 (930)
.. .++... .++|+|++||+.+.+..+|++..+++|++.+.++..++
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 44 344433 48999999999999999999999999999988876544
No 446
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.64 E-value=2.6e-16 Score=160.64 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=97.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC-CCcccHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA-LFAVTVR 778 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~-LF~gTIr 778 (930)
.+|++|++++. |+.++|+||||||||||++.+.+..- +..+|.++... .+++|... ++.-|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 35778877664 79999999999999999999977542 23466655321 35667444 4467999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHH
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~ 858 (930)
||+..+.. ...++..+ +.+.++.+. +++|+++|+||||+++|+.
T Consensus 78 d~l~~~~s--~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 78 DDLRDGIS--YFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred hccccccC--hHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 99977642 12222221 122222221 0799999999999999999
Q ss_pred HHHHHHH-HHHHHc-CCCeEEEEccCchhhhc---cCEEEEE
Q 040875 859 SEKLVQE-ALERLM-VGRTSVVVAHRLSTIQN---CDMIAVL 895 (930)
Q Consensus 859 te~~i~~-~i~~~~-~~~TvI~IaHrl~ti~~---~DrI~vl 895 (930)
+...+.. .+++.. ++.|+|++||+++.+.. .++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 8765543 455543 48899999999988754 4455554
No 447
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=5.8e-16 Score=188.53 Aligned_cols=94 Identities=33% Similarity=0.484 Sum_probs=87.4
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEE
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
.+....+|||||+||+.|||||..+| +++||||||++||+++...+.+.|+++. +|.|||+|+|+++.+..||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 35667899999999999999999986 8999999999999999999999999875 48999999999999999999999
Q ss_pred E------eCCEEEEecChhHHhc
Q 040875 895 L------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 895 l------~~G~ive~G~~~eLl~ 911 (930)
| ++|+|++.|+++++..
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhc
Confidence 9 9999999999999975
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.62 E-value=1.8e-15 Score=160.28 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC-HHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHH
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-LRSLRRHVALVSQEPALFAVTVRENITYGASDKIDES 792 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ 792 (930)
..++|+|++|||||||++.|.|++.|.+|+|.+||.++..++ ..+++..++++||+..--.-++.+|- ...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~--------~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC--------PKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc--------hHH
Confidence 688999999999999999999999999999999999998775 56788888999997632112222221 000
Q ss_pred HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC
Q 040875 793 EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV 872 (930)
Q Consensus 793 ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~ 872 (930)
+ | ...++|+ .+|+++++|||++ ...+...++...+
T Consensus 184 ~----------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~ 218 (270)
T TIGR02858 184 E----------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA 218 (270)
T ss_pred H----------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence 0 0 2455666 4999999999984 2334444554457
Q ss_pred CCeEEEEccCchh--h------------hccCEEEEEeCCEEEEecChhHHh
Q 040875 873 GRTSVVVAHRLST--I------------QNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 873 ~~TvI~IaHrl~t--i------------~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
|.|+|+++|+.+. + ..+||+++|++|+ ..|++++++
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 9999999997665 3 3379999999887 778877765
No 449
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.61 E-value=5.7e-13 Score=152.36 Aligned_cols=294 Identities=14% Similarity=0.145 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcc---cccccCCCChhh------HHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 20 WTRTGERQATRMRAIYLKAILRQDV---GYFDLHVTSTAE------IISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 20 ~~~~~~r~~~~~r~~~~~~l~~~~~---~~~~~~~~~~g~------i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
-.++-.+...+.|..+.+.++.+=+ ++|-.. ..|+ .=.+++.|+..+-+...+....++.++. .+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~i----sl 179 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVI----SL 179 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHH----HH
Confidence 4556677888888888887776521 222211 2222 2247888888877765543333333333 33
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 040875 91 IVGFMILWQLV---------------VVGFPFVVLLVVLGLIYGRILMV-----LARKMREEYNKANTIVERAISSVRTV 150 (930)
Q Consensus 91 ~~~~~~~w~~~---------------l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~~~~~E~l~~ir~v 150 (930)
+-...++|.+. ..++.++.+.++...+++.++.+ ..++.....|=|..++. +-.+.-.|
T Consensus 180 isF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvr-v~enaE~I 258 (604)
T COG4178 180 ISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVR-VRENAEAI 258 (604)
T ss_pred HHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHH-HHhhHHHH
Confidence 44444556432 12333444455555554433322 23334445666777776 88899999
Q ss_pred HhhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH
Q 040875 151 YAFVGEGKTLDEFSSALQGSVKLGLK----QGLCKGFASGINAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVG 226 (930)
Q Consensus 151 k~~~~e~~~~~~~~~~r~~e~~~~~k----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~ 226 (930)
.+|+.|+.+.++.++.-..-++...+ ...+..++.+..+++. +++ ...++-.+..|.++-|.+.++..+|...
T Consensus 259 Aly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~-v~P--~li~ap~~f~g~i~~G~lmqa~~aF~~v 335 (604)
T COG4178 259 ALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSV-VLP--ILIAAPRYFSGQITFGGLMQAVGAFGQV 335 (604)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHH-HHH--HHhccHhhhcCcChHHHHHHHHHHHHHH
Confidence 99999999887776655544443322 2222222222111111 111 1122333457889999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCC--CCC--CccCC---cccCccccEEEEeeEEeCCCCCCccccccee
Q 040875 227 GQALGAGLSNFKYISEAASAGEHIRDVIKRVPDI--DSE--NMEGE---TLEKFLGEVEFRNVVFAYPSRPETIIFKDFC 299 (930)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~--~~~--~~~~~---~~~~~~~~i~~~~~~f~y~~~~~~~~L~~is 299 (930)
..+++.+...+..+++-++...|+.+|-+..+.. +.. ..++. ..++.+..|.++|++..=|.. .+.|+++|
T Consensus 336 ~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~ 413 (604)
T COG4178 336 HSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELN 413 (604)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ceeeccce
Confidence 9999999999999999999999999986432211 110 00000 001114679999999987643 47899999
Q ss_pred eeecCCCEEEEEccCCCCCccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++|++|+.+.|.||||||||||+++|
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRai 439 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRAL 439 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999999998
No 450
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=5.4e-15 Score=191.28 Aligned_cols=134 Identities=25% Similarity=0.285 Sum_probs=111.6
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH------HHHHHHHhccCCCE
Q 040875 772 LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ------RIAIARAILKNPAV 845 (930)
Q Consensus 772 LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ------rlaLARALl~~~~I 845 (930)
.|+||+++||.+ .+ +.+++ +.+++.++.++|+..+|.| ||.++..| .||||||| |++||||++.+|+|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 589999999999 54 45655 7899999999999999999 99998876 89999999 99999999999999
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc------CCCeEEEEccCchhhh------ccCEEEEEeC---CE-EEEecChhHH
Q 040875 846 LLLDEATSALDSQSEKLVQEALERLM------VGRTSVVVAHRLSTIQ------NCDMIAVLEQ---GR-VVEEGSHESL 909 (930)
Q Consensus 846 LiLDEaTSaLD~~te~~i~~~i~~~~------~~~TvI~IaHrl~ti~------~~DrI~vl~~---G~-ive~G~~~eL 909 (930)
|+|||||++||+.+...+.+.|.+.. .|.|+|+|||+++.+. .||+.+-+.. |+ +++.-+|+-+
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSL 1306 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCccc
Confidence 99999999999999999988887652 3789999999999876 3567676532 22 4455566655
Q ss_pred hc
Q 040875 910 LA 911 (930)
Q Consensus 910 l~ 911 (930)
+.
T Consensus 1307 ~~ 1308 (1311)
T TIGR00606 1307 GK 1308 (1311)
T ss_pred cc
Confidence 53
No 451
>PRK00064 recF recombination protein F; Reviewed
Probab=99.55 E-value=1.1e-13 Score=154.66 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=66.0
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc---cC
Q 040875 823 LQLSGGQKQRIAIARAIL---------KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN---CD 890 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl---------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~---~D 890 (930)
..+|.||+|+++||+++. ++|+||+||||+|.||++..+.+.+.+.+. ++++++.+|+++.+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 579999999999999885 899999999999999999998888888653 5688899998876644 46
Q ss_pred EEEEEeCCEE
Q 040875 891 MIAVLEQGRV 900 (930)
Q Consensus 891 rI~vl~~G~i 900 (930)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 452
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.50 E-value=1.2e-13 Score=144.72 Aligned_cols=172 Identities=22% Similarity=0.289 Sum_probs=102.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHH-hcccCCCCcEEEECCccCCCC------CHHHhhcceEEEccCCCCC---
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLI-ERFYDPLKGVVKIDGEDIRSY------HLRSLRRHVALVSQEPALF--- 773 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL-~rl~~~~~G~I~idG~di~~~------~~~~lR~~i~~V~Q~p~LF--- 773 (930)
+...+.+.| ....|+|||||||||++.+| +-|.....-.. .+...+++ ........+....+++.-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~--r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~ 92 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSF--RGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFEL 92 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTT--T-SSGGTCB--BTTB---SEEEEEEEEECTTEESSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccc--cccccccccccccccccccccccccccccccccccc
Confidence 345555544 59999999999999999999 55542111000 01111111 1122334455554444211
Q ss_pred -cc--cHHHHhh--------cCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH----HH
Q 040875 774 -AV--TVRENIT--------YGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA----RA 838 (930)
Q Consensus 774 -~g--TIreNl~--------~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA----RA 838 (930)
.. .|+..+. .+. ...+..++.+.++...+.. ..||||||-+++|| ..
T Consensus 93 ~~~~~~i~r~~~~~~~~~~~in~-~~~~~~~~~~~l~~~~i~~-----------------~~lSgGEk~~~~Lal~lA~~ 154 (220)
T PF02463_consen 93 DKKEIEISRRIDRKGRSEYKING-KKVRLKDLEELLPEVGISP-----------------EFLSGGEKSLVALALLLALQ 154 (220)
T ss_dssp SSSEEEEEEEEETTS-EEEEETT-EEE-HHHHHHHHHCTTTTT-----------------TGS-HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccc-----------------cccccccccccccccccccc
Confidence 11 1111111 111 1234455555544443321 28999999999998 33
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
-..++|++||||+.++||....+.+.+.|++..+++-+|++||+..+...||+.+.+.
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3578899999999999999999999999999988899999999999999999988763
No 453
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=4.6e-14 Score=146.12 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=99.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-ccHHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRE 779 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIre 779 (930)
.|.+|++++.++ +.++|+|||||||||+++.+.+..-. |+ .|.+ ++ ..+.++++++| +|. -++++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~---vp--~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSF---VP--ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCe---ec--cccceecceee---EeccCCchh
Confidence 478999999987 99999999999999999999764311 11 1111 11 11234555544 221 22333
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH----HHHHHHHh--ccCCCEEEeecc--
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ----RIAIARAI--LKNPAVLLLDEA-- 851 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ----rlaLARAL--l~~~~ILiLDEa-- 851 (930)
|+ |.||.+ +..|++++ ..+|++++||||
T Consensus 85 ~l--------------------------------------------s~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 85 DL--------------------------------------------AGGRSTFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred hh--------------------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 33 333333 23355554 469999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHH
Q 040875 852 -TSALDSQSE-KLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 852 -TSaLD~~te-~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 909 (930)
|+++|...- ..+.+.+.+. .++|+|++||+.+....+|++--+++|++...++.+++
T Consensus 121 gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 121 GTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999998652 3344444332 37899999999877777888877888998877766655
No 454
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=1.2e-13 Score=141.37 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=95.4
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE-EccCCCCCcccH
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL-VSQEPALFAVTV 777 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Q~p~LF~gTI 777 (930)
..++.+|+++++++|+.++|.||||+||||+++.+.++. ++.++++ ||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 346889999999999999999999999999999998773 2222222 22211 11134
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCH
Q 040875 778 RENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857 (930)
Q Consensus 778 reNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~ 857 (930)
.|||... + +.+..+.++-..||+|++|+ ..+-++..+|++++||||++++|+
T Consensus 72 ~d~I~~~-------------------------~--~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 72 FNRLLSR-------------------------L--SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hhheeEe-------------------------c--CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 4444211 0 01111224456899999976 455557889999999999999999
Q ss_pred HHHHHH-HHHHHHHc-CCCeEEEEccCchhhhcc
Q 040875 858 QSEKLV-QEALERLM-VGRTSVVVAHRLSTIQNC 889 (930)
Q Consensus 858 ~te~~i-~~~i~~~~-~~~TvI~IaHrl~ti~~~ 889 (930)
.....+ .+.++... .++|+|++||..+.+..+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 754433 33444433 489999999999987653
No 455
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4.6e-14 Score=149.80 Aligned_cols=205 Identities=24% Similarity=0.391 Sum_probs=130.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCCcEEEECCccCCCCCH-----
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER--FYDPLKGVVKIDGEDIRSYHL----- 756 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~~~~G~I~idG~di~~~~~----- 756 (930)
.|.++|.+.+-. ....+-|-||.|-.|.+.|+|||+|-|||||++-+.- |.-|..=.+++..+.+---+.
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 578888887764 3347789999999999999999999999999998763 222332233333322210000
Q ss_pred --HHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHH---HHHhcch-------hHHhcCccccccccCCCCC-
Q 040875 757 --RSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEA---AKAANAH-------DFIAGLSEGYDTWCGDRGL- 823 (930)
Q Consensus 757 --~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~a---l~~~~l~-------~~i~~Lp~gldt~vge~G~- 823 (930)
+.=.++..+.--+.-| ...+--|. ....|++.++ |+..|.. ..+.. -|++-.+-+++.
T Consensus 341 vl~aD~kRl~lLeee~~L-----~~q~e~Gd--~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKL-----MSQIEEGD--TTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHcCc--hHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 0000111111111100 00110111 0011222222 2222221 11222 277777777775
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEEE
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 902 (930)
.||||=|-|++|||||+..|-+|.|||||..||...---+-+.++.+ .+|.++|+|+-.++.+ |..|+.||+-++-.
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 59999999999999999999999999999999987766666666665 5799999999999987 99999999877643
No 456
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.46 E-value=4.5e-13 Score=142.74 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=138.5
Q ss_pred EEEcCCCCCccceeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 691 HFAYPARPDVIIFKGFSINIEAEK-----STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 691 sf~Y~~~~~~~vL~~vsl~i~~Ge-----~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
.++||+. ...+.+..|.|+.|| .+...|++|-||||+++.|+|..+|++|. ++..+ +++|
T Consensus 342 ~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSy 406 (592)
T KOG0063|consen 342 RYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSY 406 (592)
T ss_pred eeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceec
Confidence 3677753 345689999999985 68889999999999999999999998762 33333 3788
Q ss_pred EccCC-CCCcccHHHHhhcCCCCCCCHHH-HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 766 VSQEP-ALFAVTVRENITYGASDKIDESE-IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 766 V~Q~p-~LF~gTIreNl~~g~~~~~~d~e-i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
=||.- -=|.||+|.=+.=--.+.+.+.+ +-++.+-... +..++..-.+||||+.||+|||-+|=+.+
T Consensus 407 kpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i-----------e~i~dqevq~lSggelQRval~KOGGKpA 475 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI-----------ENIIDQEVQGLSGGELQRVALALCLGKPA 475 (592)
T ss_pred cccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH-----------HHHHhHHhhcCCchhhHHHHHHHhcCCCC
Confidence 88854 36889998766210001122211 1222222222 22223445689999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ--GRVVEEGSHESLLA 911 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~eLl~ 911 (930)
++++.|||.+-||++....--+.+++.. ..+|-.+|-|++-..-. +||++|.+. +...-.-+|+.|+.
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999998876666676643 58999999999876644 999999974 22333445666665
No 457
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.43 E-value=1.2e-13 Score=165.50 Aligned_cols=106 Identities=28% Similarity=0.391 Sum_probs=89.6
Q ss_pred HHHHHHHHhcchhHHhcCccccccccCCCC------CCCChHHHHHHHHHHHhc----------cCCCEEEeeccC-CCC
Q 040875 793 EIIEAAKAANAHDFIAGLSEGYDTWCGDRG------LQLSGGQKQRIAIARAIL----------KNPAVLLLDEAT-SAL 855 (930)
Q Consensus 793 ei~~al~~~~l~~~i~~Lp~gldt~vge~G------~~LSgGQrQrlaLARALl----------~~~~ILiLDEaT-SaL 855 (930)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34455555543 444567899999998887 789999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC-CEE
Q 040875 856 DSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ-GRV 900 (930)
Q Consensus 856 D~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~-G~i 900 (930)
|+.+...+.+.|++. ++.|+|+|||+.+....||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999988888999999986 543
No 458
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.41 E-value=1.6e-11 Score=136.38 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC---cccccccCCCChhhHH---HHHHhhHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 040875 20 WTRTGERQATRMRAIYLKAILRQ---DVGYFDLHVTSTAEII---SSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSYIVG 93 (930)
Q Consensus 20 ~~~~~~r~~~~~r~~~~~~l~~~---~~~~~~~~~~~~g~i~---n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (930)
..+...-...|.|..+.+.++++ ...+|-.+. ..+.|- .+++.|++++...++ ....++...+.-++..
T Consensus 142 ~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~-~d~ridNPDQrltqDv~kf~~~l~----sl~s~l~~a~~di~~Y 216 (659)
T KOG0060|consen 142 LKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSN-LDDRIDNPDQRLTQDVEKFCRQLS----SLYSNLLKAPFDLVYY 216 (659)
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecc-cccccCChHHHHhHHHHHHHHHHH----HHHHhhhccceeeehh
Confidence 44455556667777776666654 444444221 112222 366779988877664 3555555555444443
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHH
Q 040875 94 FMILWQLV-VVGFPFVVLLVVLGLIYGRI-----LMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSAL 167 (930)
Q Consensus 94 ~~~~w~~~-l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r 167 (930)
-+..|..+ ..|.+.+.....++..+.+. ..+..+++...-|=|-+.+. +..+-.-|.+|+.|+.+.......-
T Consensus 217 ~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~r-lr~NaE~iAFY~g~~~E~~~~~~~f 295 (659)
T KOG0060|consen 217 TFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSR-LRVNAEEIAFYRGGQVEHQRTDQRF 295 (659)
T ss_pred hhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheee-eeecchhhhhhccCchHHHHHHHHH
Confidence 33333332 23333333333333333322 23334444444566666554 7888899999999999887776666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHhcccCCcchHHHHH----HHHHHHHHHHhhhhH
Q 040875 168 QGSVKLGLKQGLCKG-FASGINAITYAIW-------SFLAYYGSRLVMYHGAKGGAVFAAG----TTIVVGGQALGAGLS 235 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vft~~----~~~~~~~~~l~~~~~ 235 (930)
+.-.++.++...+.= +.+..+++-+... +.-+|-|+ ..+.+++.+.++.+ +.+..+...++.+.-
T Consensus 296 ~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h---~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~ 372 (659)
T KOG0060|consen 296 RNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH---VYDDLSPAELSGLISNNAFVFIYLISAFGRLVD 372 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc---ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 665555444322221 1111111111110 11111111 12346666665544 333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC-------------CCCc--cCCcc-----cCccccEEEEeeEEeCCCCCCcccc
Q 040875 236 NFKYISEAASAGEHIRDVIKRVPDID-------------SENM--EGETL-----EKFLGEVEFRNVVFAYPSRPETIIF 295 (930)
Q Consensus 236 ~~~~~~~a~~a~~ri~~~l~~~~~~~-------------~~~~--~~~~~-----~~~~~~i~~~~~~f~y~~~~~~~~L 295 (930)
.-..+.+-..=..||.++.+...+.. .... ....| ...+..|++++|+++=|++ .....
T Consensus 373 ~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~li 451 (659)
T KOG0060|consen 373 LSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLI 451 (659)
T ss_pred HhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Cceee
Confidence 44444444444556665543211100 0000 00011 0113579999999998875 44456
Q ss_pred cceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 296 KDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 296 ~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+|+||+|+.|+.+.|+||+|||||||++.+
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvl 481 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVL 481 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHH
Confidence 889999999999999999999999999987
No 459
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=1.5e-11 Score=138.93 Aligned_cols=173 Identities=20% Similarity=0.306 Sum_probs=121.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC---CccCCC-----CCHHHhhcceEEEccCCCC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID---GEDIRS-----YHLRSLRRHVALVSQEPAL 772 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id---G~di~~-----~~~~~lR~~i~~V~Q~p~L 772 (930)
.+++++ +++.+|++++|+|+||+|||||++.|.|+++|+.|.|.+. |.++.+ ++...+++.+.+|.+--
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~-- 223 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD-- 223 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC--
Confidence 478999 9999999999999999999999999999999999999995 444443 45566788888886421
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH-HH---hccCCCEEEe
Q 040875 773 FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA-RA---ILKNPAVLLL 848 (930)
Q Consensus 773 F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA-RA---Ll~~~~ILiL 848 (930)
+..-+++..+.-.+-+.|+... .|.|-.+--+ +++ |.|-| |- .+.+|+
T Consensus 224 ---------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~D--slt-----r~A~A~rEisl~~ge~P---- 275 (438)
T PRK07721 224 ---------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMD--SVT-----RVAMAQREIGLAVGEPP---- 275 (438)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEe--ChH-----HHHHHHHHHHHhcCCCC----
Confidence 0112233333333334455542 3544433211 121 22222 11 123332
Q ss_pred eccCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 040875 849 DEATSALDSQSEKLVQEALERLM---VGR-----TSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 849 DEaTSaLD~~te~~i~~~i~~~~---~~~-----TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 907 (930)
.|+++|+..-..+.+.+++.. +|. ||++.+|+++. ..||++.++.+|+|+..++..
T Consensus 276 --~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 --TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 589999999999998888765 465 99999999985 669999999999999998754
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=7.3e-12 Score=148.59 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=72.2
Q ss_pred CCCChHHHHHHHHHHHhccC----CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCC
Q 040875 823 LQLSGGQKQRIAIARAILKN----PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~----~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 898 (930)
..+||||+||++|||+++.. |++|||||||++||+.+...+.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47999999999999999975 69999999999999999999999999988899999999999999889999999987
Q ss_pred E
Q 040875 899 R 899 (930)
Q Consensus 899 ~ 899 (930)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 461
>PRK10869 recombination and repair protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=144.99 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 824 QLSGGQKQRIAIARAILK----NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~----~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.+++..+++|||+|||+++.+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 699999999999999996 6899999999999999999999999999878899999999999888899999998753
No 462
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=5.9e-11 Score=122.67 Aligned_cols=136 Identities=15% Similarity=0.191 Sum_probs=89.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER--FYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
|-+|+++.=..+.+++|+||||+||||+++.+.. .. +..|...... ..++++.+|.-.-+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l------ 79 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRM------ 79 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeee------
Confidence 4466665422237899999999999999999984 23 4556544322 12466776654221
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHH
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQS 859 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~t 859 (930)
+..+. +. +++ ..+ .-+-||+++|+++..+|++++||||++++|+..
T Consensus 80 ----~~~~s-----i~----------------~~~--------S~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 80 ----SSRES-----VS----------------SGQ--------SAF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred ----CCccC-----hh----------------hcc--------chH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 11100 00 011 011 345699999999999999999999999999865
Q ss_pred -HHHHHHHHHHHcC----CCeEEEEccCchhhhcc
Q 040875 860 -EKLVQEALERLMV----GRTSVVVAHRLSTIQNC 889 (930)
Q Consensus 860 -e~~i~~~i~~~~~----~~TvI~IaHrl~ti~~~ 889 (930)
.....+.+++..+ +.++|++||.++.+...
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4444556665532 24899999999988654
No 463
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=2.1e-12 Score=130.91 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCCCCChHHHHHHHHHHHhcc--CCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEccCchhhhccCE
Q 040875 820 DRGLQLSGGQKQRIAIARAILK--NPAVLLLDEATSALDSQSEKLV-QEALERLM--VGRTSVVVAHRLSTIQNCDM 891 (930)
Q Consensus 820 e~G~~LSgGQrQrlaLARALl~--~~~ILiLDEaTSaLD~~te~~i-~~~i~~~~--~~~TvI~IaHrl~ti~~~Dr 891 (930)
++-..||+|++| +++++.. +|+++++||||+++|+.....+ +..++... .++++|++||..+....+|+
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 345578888887 4555544 9999999999999999966655 45555543 37899999999986666774
No 464
>PRK14079 recF recombination protein F; Provisional
Probab=99.23 E-value=1.1e-10 Score=129.87 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEE
Q 040875 823 LQLSGGQKQRIAIARAIL---------KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIA 893 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl---------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~ 893 (930)
.-+|+||++++++|+.|. .+|+|++||||||.||.+....+.+.|.+. ..++|+-|+.. .-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~~~---~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTEAP---PGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCCCC---CCCceEE
Confidence 468999999999999998 899999999999999999988888888654 25666655433 3499999
Q ss_pred EEeCCEEEEecCh
Q 040875 894 VLEQGRVVEEGSH 906 (930)
Q Consensus 894 vl~~G~ive~G~~ 906 (930)
.+++|++.-..+|
T Consensus 337 ~~~~~~~~~~~~~ 349 (349)
T PRK14079 337 RIEAGVFTPEAPP 349 (349)
T ss_pred EEeccEecCCCCC
Confidence 9999988655443
No 465
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.21 E-value=6.6e-11 Score=143.40 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=99.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCC-cEEEEEcCCCCcHHHHHHHHhcc-cCCCCcEEEECCccCCCCCHHHhh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAE-KSTALVGQSGSGKSTIIGLIERF-YDPLKGVVKIDGEDIRSYHLRSLR 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~G-e~vaIVG~sGsGKSTL~~lL~rl-~~~~~G~I~idG~di~~~~~~~lR 760 (930)
+.+.++++..-+-.. ..+ -.+|+++.++ ++++|+||||+||||+++.+.+. +-+..|
T Consensus 294 ~~i~l~~~rhPll~~-~~~--vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------------------ 352 (771)
T TIGR01069 294 GKIILENARHPLLKE-PKV--VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------------------ 352 (771)
T ss_pred CCEEEccccCceecC-Cce--EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------------------
Confidence 457777764322110 001 1368888887 99999999999999999999887 333333
Q ss_pred cceEEEccCCC-CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 761 RHVALVSQEPA-LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 761 ~~i~~V~Q~p~-LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
.+||.++. .+ .+.+++.. ...+++ .+.++-..||+|++|+..+++++
T Consensus 353 ---~~Vpa~~~~~~--~~~d~i~~----~i~~~~-----------------------si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 353 ---IPIPANEHSEI--PYFEEIFA----DIGDEQ-----------------------SIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred ---CCccCCccccc--cchhheee----ecChHh-----------------------HHhhhhhHHHHHHHHHHHHHHhc
Confidence 14454431 11 11222210 111110 11133457999999999999987
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc-CCCeEEEEccCchhh
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQ-EALERLM-VGRTSVVVAHRLSTI 886 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~-~~i~~~~-~~~TvI~IaHrl~ti 886 (930)
.+|+++|||||++++|+..-..+. ..++... +++++|++||..+.-
T Consensus 401 -~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 401 -TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred -CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 789999999999999999887774 4454443 589999999998764
No 466
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=2.5e-11 Score=126.61 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccC-----CCCCHHHHHHHHHHHHHHc
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEAT-----SALDSQSEKLVQEALERLM 871 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaT-----SaLD~~te~~i~~~i~~~~ 871 (930)
-|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998864
No 467
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.19 E-value=2.1e-11 Score=130.22 Aligned_cols=170 Identities=26% Similarity=0.316 Sum_probs=121.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----------------CCHHHhh--cceEEEccCCCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS----------------YHLRSLR--RHVALVSQEPAL 772 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~----------------~~~~~lR--~~i~~V~Q~p~L 772 (930)
+||+..|+||.+|-||||-++.|.|-.+|+-|.- -++-|-.+ +....++ -+..||-|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 4799999999999999999999999999987752 12211111 1111121 123345555555
Q ss_pred CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccC
Q 040875 773 FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEAT 852 (930)
Q Consensus 773 F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaT 852 (930)
-.|++.+++.--. +.+...++++..+|....+ ..-.+||||+-||.+||-+...++++.++|||.
T Consensus 177 ~k~~v~~~l~~~~----~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpS 241 (592)
T KOG0063|consen 177 VKGTVGSLLDRKD----ERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPS 241 (592)
T ss_pred HHHHHHHHHHHHh----hcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCc
Confidence 6678888772211 1112333444444433222 224579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEe
Q 040875 853 SALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 853 SaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
|-||.+....-..+|+.+.. ++=+|+|-|+|+.+.. +|-|.++-
T Consensus 242 sYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 242 SYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred ccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999988888888998864 8899999999999875 88888874
No 468
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.3e-10 Score=133.81 Aligned_cols=110 Identities=35% Similarity=0.530 Sum_probs=88.7
Q ss_pred HHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccC
Q 040875 806 FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHR 882 (930)
Q Consensus 806 ~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHr 882 (930)
|+....-||-|. ...-..|||||.|||-||+-|=.+= =++|||||+.+|-++--..+.++|+++. .|.|+|+|-|+
T Consensus 464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHD 542 (935)
T COG0178 464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHD 542 (935)
T ss_pred HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 444443344443 4445689999999999999998664 4789999999998875556667888776 49999999999
Q ss_pred chhhhccCEEEEE------eCCEEEEecChhHHhccCCCcH
Q 040875 883 LSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGPAGA 917 (930)
Q Consensus 883 l~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~~g~ 917 (930)
.++|+.||+|+-| ..|+|+..|+|+|++++ +++.
T Consensus 543 edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~-~~Sl 582 (935)
T COG0178 543 EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN-PESL 582 (935)
T ss_pred HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC-Ccch
Confidence 9999999999998 47999999999999984 5543
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.17 E-value=4.5e-11 Score=130.99 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=102.3
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCC
Q 040875 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGA 785 (930)
Q Consensus 706 vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~ 785 (930)
+++.+++|+.++|+|++||||||++++|++++++..|.+.|+ |..++.+.. +..+.++.|.. +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~-------------~- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG-------------G- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC-------------C-
Confidence 457788999999999999999999999999999988888875 444444332 22222221110 0
Q ss_pred CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHH
Q 040875 786 SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQE 865 (930)
Q Consensus 786 ~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~ 865 (930)
++....+- .=+++++|-.+|+++++|||.+ .+ +.+
T Consensus 200 ----------------------------------~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~ 234 (308)
T TIGR02788 200 ----------------------------------QGLAKVTP----KDLLQSCLRMRPDRIILGELRG---DE----AFD 234 (308)
T ss_pred ----------------------------------CCcCccCH----HHHHHHHhcCCCCeEEEeccCC---HH----HHH
Confidence 00001111 1246677889999999999996 22 344
Q ss_pred HHHHHcCCC-eEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 866 ALERLMVGR-TSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 866 ~i~~~~~~~-TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
.++....|. ++++..|..+.....||+..|..|++...|.+.+.+.
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 555554555 5699999999777799999999999999999988874
No 470
>PRK13695 putative NTPase; Provisional
Probab=99.17 E-value=4.1e-11 Score=120.42 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=69.7
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEeecc--CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCE
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLDEA--TSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGR 899 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLDEa--TSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 899 (930)
...+||+++-+..+++..+++|+++++||| +..+|....+.+.+.+ ..++++|+++|+-..-..+|+|..+.+|+
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 446999999999999999999999999995 4445544444444444 24899999999965556799999999999
Q ss_pred EEEecChhHHhccCCCcHHHHHHH
Q 040875 900 VVEEGSHESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 900 ive~G~~~eLl~~~~~g~y~~l~~ 923 (930)
|.+.- + ++++..|.+..+
T Consensus 153 i~~~~-~-----~~r~~~~~~~~~ 170 (174)
T PRK13695 153 VYELT-P-----ENRDSLPFEILN 170 (174)
T ss_pred EEEEc-c-----hhhhhHHHHHHH
Confidence 99873 2 235666666544
No 471
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=3.8e-10 Score=126.03 Aligned_cols=63 Identities=33% Similarity=0.444 Sum_probs=57.2
Q ss_pred CCCChHHHHHHHHHHHhcc---------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh
Q 040875 823 LQLSGGQKQRIAIARAILK---------NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~---------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~ 887 (930)
..+|.||+++++||.+|+. +|+||+||||+|.||+...+.+.+.|.+. |.++++.+|+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999998754 679999999987654
No 472
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=4e-11 Score=132.27 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=75.4
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCC
Q 040875 209 HGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPS 288 (930)
Q Consensus 209 ~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~ 288 (930)
+.+++..+|+.+..+.....++..++.... ...|+..|+..+ +.+....... ....+.|+++|++|+|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQ-------KKAELKQFLNKK-KTQVDLLKED--FNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhcccc-------cchhhhhccccc-ccccccccCC--CCcCceEEEEeeEEEecC
Confidence 456788888888777776655544333222 245777876542 2111110101 122357999999999974
Q ss_pred CCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 289 RPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 289 ~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
...++|+|+||+|++||+++|+||+|||||||+++|.+
T Consensus 93 -~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 93 -RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred -CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 33569999999999999999999999999999999864
No 473
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.08 E-value=2.8e-11 Score=116.50 Aligned_cols=49 Identities=37% Similarity=0.609 Sum_probs=45.7
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+|+||+..|+.. +++|+|+||+|++||++.++||||+||||++++|+.
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHh
Confidence 7899999999864 679999999999999999999999999999999864
No 474
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=5.9e-11 Score=120.77 Aligned_cols=47 Identities=32% Similarity=0.477 Sum_probs=44.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.+++++++.+|+. ..+|+|+||+|++||+|+|+||||||||||++.|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHH
Confidence 4789999999975 6799999999999999999999999999999987
No 475
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=5.2e-10 Score=115.73 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=41.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc-ccCCCCcEEEE
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER-FYDPLKGVVKI 746 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r-l~~~~~G~I~i 746 (930)
..+.+|+++++++|++++|.||||+||||+++.+.+ .+.++.|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 458899999999999999999999999999999999 66777776543
No 476
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.06 E-value=2.4e-09 Score=112.09 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=83.4
Q ss_pred EeCCcEEEEEcCCCCcHHHH-HHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHh-hcCCCC
Q 040875 710 IEAEKSTALVGQSGSGKSTI-IGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENI-TYGASD 787 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL-~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl-~~g~~~ 787 (930)
+++|+.+.|.|++||||||+ .+.+.++.++.+..++++..+ +.+++ .++. .+|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~------------------~~~~~~~g~-- 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEF------------------IKQMMSLGY-- 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHH------------------HHHHHHhCC--
Confidence 78999999999999999999 688998876544444443211 11111 1111 1111
Q ss_pred CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCC----CHHH
Q 040875 788 KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSAL----DSQS 859 (930)
Q Consensus 788 ~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaL----D~~t 859 (930)
+.++ ....-.+ .+ ++ + . ..+|++++++-.+++.+- .+|+++++||||+.+ |+..
T Consensus 77 --~~~~---~~~~~~l-~~-------~~--~--~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 --DINK---KLISGKL-LY-------IP--V--Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred --chHH---HhhcCcE-EE-------EE--e--c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 1111 0000000 00 00 0 0 135666655544444443 369999999999999 6666
Q ss_pred HHHHHHHHHHHc-CCCeEEEEccCchh--------hhc-cCEEEEEe
Q 040875 860 EKLVQEALERLM-VGRTSVVVAHRLST--------IQN-CDMIAVLE 896 (930)
Q Consensus 860 e~~i~~~i~~~~-~~~TvI~IaHrl~t--------i~~-~DrI~vl~ 896 (930)
.+.+.+.+++.. +|+|+++ ||+... +.. ||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 677788887664 3776655 555433 232 68888886
No 477
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.05 E-value=8.7e-11 Score=115.89 Aligned_cols=47 Identities=32% Similarity=0.566 Sum_probs=43.8
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.|+++|++.+|. +..+|+|||++|++||.++|+|||||||||||++|
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHH
Confidence 489999999996 45699999999999999999999999999999998
No 478
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.05 E-value=1.7e-09 Score=110.18 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=61.3
Q ss_pred ccCCCCCCCChHHHH------HHHHHHHhccCCCEEEeeccCCCCC---HHHHHHHHHHHHHHc-CCCeEEEEccCchh-
Q 040875 817 WCGDRGLQLSGGQKQ------RIAIARAILKNPAVLLLDEATSALD---SQSEKLVQEALERLM-VGRTSVVVAHRLST- 885 (930)
Q Consensus 817 ~vge~G~~LSgGQrQ------rlaLARALl~~~~ILiLDEaTSaLD---~~te~~i~~~i~~~~-~~~TvI~IaHrl~t- 885 (930)
.+...+..+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++... .|.|+|+++|....
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 344566789999999 4444444557899999999999999 666667777776653 48999999998764
Q ss_pred --------hhc-cCEEEEEe
Q 040875 886 --------IQN-CDMIAVLE 896 (930)
Q Consensus 886 --------i~~-~DrI~vl~ 896 (930)
+.. ||.|+.|+
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcccCcCceeEeeeEEEEEE
Confidence 444 89999997
No 479
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.3e-10 Score=116.27 Aligned_cols=49 Identities=35% Similarity=0.573 Sum_probs=45.5
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.|+++|++-.||+ .+.+|+||||+|++||+|+|+||||||||||+++|-
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHh
Confidence 5899999999984 567999999999999999999999999999999983
No 480
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.02 E-value=1.7e-09 Score=133.28 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=59.1
Q ss_pred hccCCCEEEeeccCCCC-CHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh----------ccCEEEEEeCCEEEEecCh
Q 040875 839 ILKNPAVLLLDEATSAL-DSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ----------NCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaL-D~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~----------~~DrI~vl~~G~ive~G~~ 906 (930)
+..+|+++++|||+++| |+...+.+.+.+++.. +|.+++++||+++.+. .||+.++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35899999999999999 6888889999998765 4899999999998874 6999999999998777643
No 481
>PRK01156 chromosome segregation protein; Provisional
Probab=99.00 E-value=7.8e-10 Score=139.65 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=66.9
Q ss_pred CCCCCChHHHHHHHH------HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C--C-CeEEEEccCchhhhccC
Q 040875 821 RGLQLSGGQKQRIAI------ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V--G-RTSVVVAHRLSTIQNCD 890 (930)
Q Consensus 821 ~G~~LSgGQrQrlaL------ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~--~-~TvI~IaHrl~ti~~~D 890 (930)
.+..||||||||+|| ||+++.+|++++|||||++||+.+...+.+.++... . + .|+|+|||+.+.+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999888888887533 2 2 48999999999998899
Q ss_pred EEEEEe
Q 040875 891 MIAVLE 896 (930)
Q Consensus 891 rI~vl~ 896 (930)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 482
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.99 E-value=2.3e-10 Score=127.24 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=55.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-EEEECCccCCCCCH---HHhhcceEEEccCC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-VVKIDGEDIRSYHL---RSLRRHVALVSQEP 770 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~I~idG~di~~~~~---~~lR~~i~~V~Q~p 770 (930)
.+|++||+++++||.++||||||||||||++ .++.+|++| +|.+||.++...+. +.+| +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHHhh
Confidence 4899999999999999999999999999999 677778888 79999999987664 4455 888865
No 483
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.99 E-value=7.8e-10 Score=134.59 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEccCchhhhc-cCEEEEEe
Q 040875 820 DRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEA-LERLM-VGRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 820 e~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~-i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
.+...||+|++|+..|+|++ .+|+++|||||++++|+.....+... ++... +++++|++||..+.... +|+..++
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~- 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE- 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-
Confidence 34568999999999999999 89999999999999999877766554 44432 48999999999888765 4555443
Q ss_pred CCEE
Q 040875 897 QGRV 900 (930)
Q Consensus 897 ~G~i 900 (930)
++.+
T Consensus 464 ~~~~ 467 (782)
T PRK00409 464 NASV 467 (782)
T ss_pred EEEE
Confidence 4444
No 484
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=9.8e-10 Score=140.08 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCCChHHHHHHHHHHHhcc----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-
Q 040875 821 RGLQLSGGQKQRIAIARAILK----------NPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN- 888 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~----------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~- 888 (930)
...+|||||++|++||+||.. +|++|+|||||++||+++...+.+.|+++. .|+||++|||.++....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 357899999999999999985 799999999999999999999999998875 48999999999998865
Q ss_pred cCEEEEEeCC
Q 040875 889 CDMIAVLEQG 898 (930)
Q Consensus 889 ~DrI~vl~~G 898 (930)
+|+|.|+..|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999754
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2e-10 Score=112.79 Aligned_cols=48 Identities=33% Similarity=0.572 Sum_probs=44.6
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
..++++|+++.|. +..+|+|||++|++++.+|++|||||||||+|+++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHH
Confidence 4689999999996 45699999999999999999999999999999998
No 486
>PRK03918 chromosome segregation protein; Provisional
Probab=98.97 E-value=1.1e-09 Score=138.74 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=67.2
Q ss_pred CCCCChHHHH------HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhccCEEEE
Q 040875 822 GLQLSGGQKQ------RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 822 G~~LSgGQrQ------rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~~DrI~v 894 (930)
+..||||||| |+||||+++.+|+++||||||++||+.+...+.+.|..... +.|+|+|||+.+....||++++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 4579999999 66677789999999999999999999999999999987653 6799999999998777999999
Q ss_pred Ee
Q 040875 895 LE 896 (930)
Q Consensus 895 l~ 896 (930)
|+
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
No 487
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.96 E-value=3e-10 Score=118.07 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++|+|+ ..++|+|+||+|++||+++|+||.||||||||++|.
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 378999999997 457999999999999999999999999999999984
No 488
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.96 E-value=3.1e-10 Score=115.53 Aligned_cols=49 Identities=41% Similarity=0.546 Sum_probs=43.6
Q ss_pred EEEEeeEEeCCCCC-CcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 277 VEFRNVVFAYPSRP-ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 277 i~~~~~~f~y~~~~-~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++++|++..|.... ..++|+++||+|++||+|+|+|||||||||||+.|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 57899999996542 35799999999999999999999999999999987
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.92 E-value=1.9e-09 Score=110.35 Aligned_cols=119 Identities=22% Similarity=0.273 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESE 793 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~e 793 (930)
.+.|+|||||||||+++.|.+.+++. .|.|..-+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 58899999999999999999988754 567665443331 1100 001111111
Q ss_pred HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 040875 794 IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG 873 (930)
Q Consensus 794 i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~ 873 (930)
++|.+...++. ++++||..+|+++++||+. |.++- ..+++....|
T Consensus 55 -----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~---~~~l~~a~~G 99 (198)
T cd01131 55 -----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETI---RLALTAAETG 99 (198)
T ss_pred -----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHH---HHHHHHHHcC
Confidence 11122222322 4889999999999999996 66543 3344444569
Q ss_pred CeEEEEccCchhhhccCEEEEEe
Q 040875 874 RTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 874 ~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
.++++++|..+.....||++.|-
T Consensus 100 ~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 100 HLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred CEEEEEecCCcHHHHHhHHHhhc
Confidence 99999999998877788887663
No 490
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=5.4e-10 Score=115.46 Aligned_cols=49 Identities=37% Similarity=0.626 Sum_probs=45.3
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.|+++|++|+|.++ ++|+||||+|++|++++|+||.|+|||||++++++
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999643 59999999999999999999999999999999974
No 491
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=1.9e-09 Score=141.44 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCCCChHHHHHHHHHHHh----ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE
Q 040875 821 RGLQLSGGQKQRIAIARAI----LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVL 895 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARAL----l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl 895 (930)
.+..||||||||++|||++ +++|+++||||||++||+.+...+.+.|+...++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4568999999999999998 57889999999999999999999999999887788999999999998889999755
No 492
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.87 E-value=8.1e-10 Score=111.31 Aligned_cols=46 Identities=35% Similarity=0.541 Sum_probs=43.3
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
|+|+|+|+.|. +..+++|+||+|++||+++++|||||||||+++.|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMI 47 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI 47 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHH
Confidence 78999999996 46789999999999999999999999999999987
No 493
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=1.1e-09 Score=110.00 Aligned_cols=49 Identities=39% Similarity=0.647 Sum_probs=45.4
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..|++++++++|. +..+|+|+||+|++||.++|+||||||||||+++|.
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~ 55 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHh
Confidence 4699999999995 467999999999999999999999999999999985
No 494
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.86 E-value=1.8e-08 Score=99.76 Aligned_cols=128 Identities=17% Similarity=0.095 Sum_probs=78.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHH
Q 040875 716 TALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEII 795 (930)
Q Consensus 716 vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~ 795 (930)
+.|.|++|+||||+++.+.+...+..|.+.+-+.+.... + .+++..... .
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~---~------------------~~~~~~~~~--~------- 51 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE---E------------------LTERLIGES--L------- 51 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH---H------------------HHHHHhhhh--h-------
Confidence 689999999999999999998877666655443322111 1 111110000 0
Q ss_pred HHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCH----------HHHHHHHH
Q 040875 796 EAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS----------QSEKLVQE 865 (930)
Q Consensus 796 ~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~----------~te~~i~~ 865 (930)
...++.. ..+......-+.++.++++.+++.-.+|+++|+||+++-+|. ...+.+.+
T Consensus 52 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 52 ------------KGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred ------------ccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0000010 011112223445666688999999999999999999965444 44455555
Q ss_pred HHHHHc-CCCeEEEEccCchhh
Q 040875 866 ALERLM-VGRTSVVVAHRLSTI 886 (930)
Q Consensus 866 ~i~~~~-~~~TvI~IaHrl~ti 886 (930)
..+... .++|+++++|..+..
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 554443 389999999988654
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.5e-09 Score=109.56 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=45.1
Q ss_pred cEEEEeeEEeCCCCC-CcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRP-ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~-~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|+++.|+... --++|+||||+|++||+++|||+||||||||+++|.
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 478999999997542 125899999999999999999999999999999985
No 496
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.9e-09 Score=111.04 Aligned_cols=52 Identities=33% Similarity=0.484 Sum_probs=46.8
Q ss_pred cEEEEeeEEeCCCC-CCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSR-PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~-~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.+.++|++|.||.. .+.++|+|+||+|++||+++|+||+|||||||+++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc
Confidence 36899999999864 45679999999999999999999999999999999853
No 497
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=1.7e-08 Score=113.20 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=116.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++-++++-.|.. ...+++++ +++.+||+++|+|++|+|||||++.|.|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 4566666666643 33577875 99999999999999999999999999999999888776666432
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc---
Q 040875 764 ALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--- 840 (930)
Q Consensus 764 ~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--- 840 (930)
-+++|.+. +.++..+++ .|.+=-...+-|.|+|+|.+.+.+.+
T Consensus 195 -----------~ev~e~~~-------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 -----------REVKDFIR-------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------ccHHHHHH-------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 22333321 111111111 11111345678999999999999888
Q ss_pred ----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 841 ----KNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 841 ----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
.++-++++||+|...|+. +.|...+.+.- .|.|..+-+|-.+....+-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 788999999999999997 45655655544 47888888884333344443 47888865543
No 498
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.2e-08 Score=105.23 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=81.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-ccH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTV 777 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTI 777 (930)
.+|-+|++|++++|++++|.||||+||||+++.+....-. +-|. .+ +-+ +.++.+. ..+|. -.-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccc---cEEEEecCc
Confidence 4578999999999999999999999999999887665311 1110 00 000 0011111 11121 112
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCH
Q 040875 778 RENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857 (930)
Q Consensus 778 reNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~ 857 (930)
.||+..+. +.+. -|-+++.-.=....+|++++||||.++.|+
T Consensus 83 ~d~~~~~~-------------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 83 RDDIMKGE-------------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccccCc-------------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 22221111 1111 122222111111257899999999999999
Q ss_pred HHHHHHHHH-HHHHcC--CCeEEEEccCchhhhc
Q 040875 858 QSEKLVQEA-LERLMV--GRTSVVVAHRLSTIQN 888 (930)
Q Consensus 858 ~te~~i~~~-i~~~~~--~~TvI~IaHrl~ti~~ 888 (930)
.....+... ++.+.+ ++++|++||..+.+..
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 877766666 444443 8999999999998765
No 499
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.80 E-value=6.6e-09 Score=136.06 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=69.7
Q ss_pred CCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 822 GLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
...||||||++++||+++. ++||+++|||||++||+.....+.+.|++..+++++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 4589999999999999997 578999999999999999999999999988778899999999999988999987753
No 500
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.7e-09 Score=115.37 Aligned_cols=47 Identities=38% Similarity=0.576 Sum_probs=43.3
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.|+++|++.+|... . +|+|+||+|++||+++++|||||||||+|++|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 58999999999642 1 89999999999999999999999999999988
Done!