Query 040875
Match_columns 930
No_of_seqs 378 out of 3442
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 6E-145 2E-149 1393.7 92.7 922 2-929 142-1320(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 6E-124 2E-128 1196.6 90.5 923 2-928 114-1273(1284)
3 4f4c_A Multidrug resistance pr 100.0 1.3E-94 4.3E-99 927.9 73.4 578 345-927 59-655 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 3.7E-88 1.3E-92 803.6 73.1 564 354-927 17-580 (587)
5 4a82_A Cystic fibrosis transme 100.0 3.9E-87 1.3E-91 795.0 67.6 572 348-926 2-577 (578)
6 3qf4_B Uncharacterized ABC tra 100.0 2.9E-87 9.8E-92 798.5 64.8 571 345-927 22-592 (598)
7 2yl4_A ATP-binding cassette SU 100.0 3.3E-85 1.1E-89 781.8 74.3 577 347-927 6-585 (595)
8 3b5x_A Lipid A export ATP-bind 100.0 1.3E-84 4.5E-89 774.7 77.7 570 347-927 12-581 (582)
9 3b60_A Lipid A export ATP-bind 100.0 1.3E-84 4.5E-89 774.7 72.7 569 347-926 12-580 (582)
10 3g5u_A MCG1178, multidrug resi 100.0 2.1E-86 7.3E-91 849.7 61.0 573 349-926 36-626 (1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.5E-67 8.6E-72 568.4 27.4 278 644-927 14-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.3E-56 4.4E-61 473.6 32.5 240 683-925 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 8E-56 2.7E-60 471.2 29.5 242 683-928 16-257 (260)
14 2ixe_A Antigen peptide transpo 100.0 2.4E-55 8.1E-60 470.1 28.7 243 683-928 15-260 (271)
15 1mv5_A LMRA, multidrug resista 100.0 7.8E-56 2.7E-60 467.6 21.0 238 685-926 2-239 (243)
16 3gd7_A Fusion complex of cysti 100.0 2.3E-53 7.9E-58 473.5 28.1 234 682-920 17-250 (390)
17 2cbz_A Multidrug resistance-as 100.0 1E-51 3.4E-56 433.8 25.1 226 684-927 3-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 2.6E-51 9E-56 428.6 27.3 222 683-922 5-227 (229)
19 3tui_C Methionine import ATP-b 100.0 3.1E-50 1E-54 441.3 25.8 226 683-920 23-261 (366)
20 3tif_A Uncharacterized ABC tra 100.0 2.6E-50 8.8E-55 422.5 21.1 216 685-910 2-233 (235)
21 3gfo_A Cobalt import ATP-bindi 100.0 4.9E-50 1.7E-54 428.1 21.8 215 684-911 7-233 (275)
22 1ji0_A ABC transporter; ATP bi 100.0 5.5E-49 1.9E-53 414.1 25.2 215 684-911 6-228 (240)
23 2olj_A Amino acid ABC transpor 100.0 1.2E-48 4.2E-53 415.0 25.2 220 684-918 24-254 (263)
24 4g1u_C Hemin import ATP-bindin 100.0 1.3E-48 4.4E-53 416.4 23.9 214 684-911 11-237 (266)
25 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-48 6.7E-53 427.2 24.8 223 684-921 4-237 (359)
26 1vpl_A ABC transporter, ATP-bi 100.0 3.4E-48 1.1E-52 410.4 25.4 214 683-911 14-235 (256)
27 1b0u_A Histidine permease; ABC 100.0 4.7E-48 1.6E-52 411.9 25.0 220 684-918 6-248 (262)
28 3rlf_A Maltose/maltodextrin im 100.0 3.4E-48 1.2E-52 428.0 24.7 220 684-920 3-231 (381)
29 2yz2_A Putative ABC transporte 100.0 1.4E-47 4.7E-52 409.6 25.5 214 685-912 3-228 (266)
30 1g6h_A High-affinity branched- 100.0 5.5E-48 1.9E-52 410.8 21.9 211 684-908 7-239 (257)
31 2pcj_A ABC transporter, lipopr 100.0 7.2E-48 2.5E-52 401.2 22.2 208 684-905 4-222 (224)
32 2ihy_A ABC transporter, ATP-bi 100.0 5E-48 1.7E-52 414.4 21.3 215 683-911 20-252 (279)
33 2bbs_A Cystic fibrosis transme 100.0 8.7E-48 3E-52 414.0 23.2 216 683-921 39-255 (290)
34 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-47 7.2E-52 402.6 23.3 209 684-911 4-222 (249)
35 2onk_A Molybdate/tungstate ABC 100.0 1.1E-47 3.6E-52 402.9 20.8 209 685-912 2-217 (240)
36 2yyz_A Sugar ABC transporter, 100.0 4.8E-47 1.6E-51 418.0 26.9 219 684-919 3-230 (359)
37 1z47_A CYSA, putative ABC-tran 100.0 3.1E-47 1E-51 418.4 25.0 221 683-919 13-242 (355)
38 2it1_A 362AA long hypothetical 100.0 2.8E-47 9.5E-52 420.4 24.3 219 684-919 3-230 (362)
39 1v43_A Sugar-binding transport 100.0 9E-47 3.1E-51 417.8 25.9 219 684-919 11-238 (372)
40 3d31_A Sulfate/molybdate ABC t 100.0 4.5E-47 1.5E-51 417.0 23.2 216 685-918 2-223 (348)
41 1oxx_K GLCV, glucose, ABC tran 100.0 5.2E-47 1.8E-51 418.4 22.9 221 684-919 3-237 (353)
42 1g29_1 MALK, maltose transport 100.0 1.5E-46 5E-51 417.3 23.7 219 684-919 3-236 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-46 3.9E-51 399.0 20.5 211 684-908 3-230 (250)
44 2pjz_A Hypothetical protein ST 100.0 5.8E-46 2E-50 394.5 19.9 208 685-911 2-215 (263)
45 2zu0_C Probable ATP-dependent 100.0 6.7E-46 2.3E-50 396.4 20.3 215 684-911 20-254 (267)
46 2nq2_C Hypothetical ABC transp 100.0 8E-46 2.7E-50 392.2 20.7 201 684-911 4-217 (253)
47 1sgw_A Putative ABC transporte 100.0 5.6E-45 1.9E-49 374.7 13.9 197 683-901 9-211 (214)
48 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-34 4.1E-39 344.1 37.9 316 8-327 75-391 (587)
49 4a82_A Cystic fibrosis transme 100.0 8.6E-35 3E-39 345.4 34.9 313 11-327 76-389 (578)
50 2v9p_A Replication protein E1; 100.0 1.1E-40 3.8E-45 358.6 -17.3 236 618-926 39-276 (305)
51 2yl4_A ATP-binding cassette SU 100.0 1.5E-33 5.2E-38 336.1 41.6 313 11-326 77-391 (595)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-36 5.8E-41 354.7 15.1 200 684-911 287-493 (538)
53 3qf4_B Uncharacterized ABC tra 100.0 3.8E-34 1.3E-38 340.9 35.3 314 8-327 89-403 (598)
54 3bk7_A ABC transporter ATP-bin 100.0 2.9E-36 9.9E-41 356.0 16.8 200 684-911 357-563 (607)
55 3ozx_A RNAse L inhibitor; ATP 100.0 1E-35 3.4E-40 346.9 17.8 201 683-910 268-476 (538)
56 3b5x_A Lipid A export ATP-bind 100.0 4.9E-33 1.7E-37 330.9 41.1 313 8-326 77-390 (582)
57 3b60_A Lipid A export ATP-bind 100.0 4.9E-33 1.7E-37 330.8 37.9 312 9-326 78-390 (582)
58 2iw3_A Elongation factor 3A; a 100.0 3.3E-35 1.1E-39 357.0 18.4 199 684-905 671-981 (986)
59 3j16_B RLI1P; ribosome recycli 100.0 1E-34 3.4E-39 341.9 15.1 198 688-911 350-559 (608)
60 3bk7_A ABC transporter ATP-bin 100.0 1.1E-34 3.9E-39 342.4 12.6 197 684-898 83-304 (607)
61 2iw3_A Elongation factor 3A; a 100.0 7.9E-33 2.7E-37 336.2 27.1 197 683-911 434-635 (986)
62 1yqt_A RNAse L inhibitor; ATP- 100.0 2E-34 6.9E-39 337.2 10.6 196 685-898 21-234 (538)
63 3ux8_A Excinuclease ABC, A sub 100.0 7.1E-34 2.4E-38 344.0 15.3 211 700-920 31-306 (670)
64 3ux8_A Excinuclease ABC, A sub 100.0 6.6E-34 2.3E-38 344.2 14.7 199 701-911 336-640 (670)
65 3pih_A Uvrabc system protein A 100.0 1.2E-32 4.1E-37 334.9 19.7 206 701-919 598-908 (916)
66 3j16_B RLI1P; ribosome recycli 100.0 4.6E-32 1.6E-36 319.3 14.2 196 689-900 82-299 (608)
67 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-32 5E-37 320.3 8.5 192 689-899 4-214 (538)
68 2vf7_A UVRA2, excinuclease ABC 100.0 4.1E-31 1.4E-35 318.9 17.2 210 683-911 501-827 (842)
69 2r6f_A Excinuclease ABC subuni 100.0 1.7E-30 5.7E-35 312.8 17.7 209 683-911 628-942 (972)
70 4aby_A DNA repair protein RECN 100.0 1.6E-30 5.5E-35 298.1 14.7 201 702-904 50-381 (415)
71 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.1E-34 1.8E-38 325.9 -15.6 191 685-911 119-338 (460)
72 2ygr_A Uvrabc system protein A 100.0 8.1E-30 2.8E-34 308.1 18.4 209 683-911 646-960 (993)
73 1e69_A Chromosome segregation 99.9 8.8E-28 3E-32 264.7 14.8 205 704-909 16-311 (322)
74 3b85_A Phosphate starvation-in 99.9 2.4E-29 8.1E-34 257.6 -5.6 153 700-900 13-172 (208)
75 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-25 6.3E-30 249.6 14.8 83 820-902 275-364 (365)
76 1z6g_A Guanylate kinase; struc 99.9 6E-29 2.1E-33 258.1 -14.6 165 702-897 12-193 (218)
77 4gp7_A Metallophosphoesterase; 99.9 1.4E-26 4.7E-31 230.9 2.6 149 705-892 1-168 (171)
78 1ye8_A Protein THEP1, hypothet 99.9 1.1E-25 3.8E-30 224.9 4.1 148 715-903 2-160 (178)
79 2pt7_A CAG-ALFA; ATPase, prote 99.9 1E-26 3.4E-31 255.7 -4.7 141 687-900 151-292 (330)
80 2dpy_A FLII, flagellum-specifi 99.9 4.7E-26 1.6E-30 258.8 -9.5 195 683-911 130-344 (438)
81 1tq4_A IIGP1, interferon-induc 99.9 6.9E-26 2.4E-30 253.9 -8.6 168 700-893 36-248 (413)
82 2vf7_A UVRA2, excinuclease ABC 99.9 1E-22 3.6E-27 245.8 13.2 100 818-918 373-481 (842)
83 3b9q_A Chloroplast SRP recepto 99.9 6.5E-24 2.2E-28 229.9 -1.4 175 704-901 91-285 (302)
84 3sop_A Neuronal-specific septi 99.9 8.8E-24 3E-28 225.5 -2.4 148 715-887 4-154 (270)
85 3aez_A Pantothenate kinase; tr 99.9 3.4E-24 1.2E-28 233.2 -7.4 176 682-899 41-246 (312)
86 2o5v_A DNA replication and rep 99.9 1.5E-21 5E-26 215.6 13.0 82 824-910 265-355 (359)
87 2eyu_A Twitching motility prot 99.8 4.6E-25 1.6E-29 234.2 -15.6 176 701-884 15-241 (261)
88 2og2_A Putative signal recogni 99.8 5.9E-23 2E-27 226.1 -0.9 174 704-900 148-341 (359)
89 2f1r_A Molybdopterin-guanine d 99.8 5.3E-24 1.8E-28 210.5 -8.5 111 714-846 3-125 (171)
90 2ewv_A Twitching motility prot 99.8 2.1E-24 7.2E-29 241.2 -14.1 177 701-885 126-353 (372)
91 1znw_A Guanylate kinase, GMP k 99.8 1.8E-23 6.2E-28 215.3 -7.4 169 700-896 9-202 (207)
92 2i3b_A HCR-ntpase, human cance 99.8 1.5E-22 5.1E-27 203.9 -3.5 172 713-923 1-182 (189)
93 1lvg_A Guanylate kinase, GMP k 99.8 2.5E-23 8.6E-28 212.4 -10.9 167 711-910 2-182 (198)
94 2obl_A ESCN; ATPase, hydrolase 99.8 1.3E-21 4.3E-26 215.8 -0.7 195 683-910 44-254 (347)
95 3pih_A Uvrabc system protein A 99.8 5.8E-20 2E-24 223.8 12.5 166 731-912 386-561 (916)
96 4ad8_A DNA repair protein RECN 99.8 1.7E-19 5.7E-24 211.5 14.0 76 823-898 395-473 (517)
97 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-21 4E-26 230.2 -4.9 167 699-897 24-209 (525)
98 1cr0_A DNA primase/helicase; R 99.8 4.3E-20 1.5E-24 201.2 7.1 181 701-900 23-237 (296)
99 3asz_A Uridine kinase; cytidin 99.8 1.8E-21 6.1E-26 201.1 -6.6 142 709-883 2-161 (211)
100 3qkt_A DNA double-strand break 99.8 1.1E-18 3.7E-23 193.4 15.3 75 822-896 246-327 (339)
101 2r6f_A Excinuclease ABC subuni 99.8 2.6E-19 9E-24 215.9 10.7 151 738-911 433-600 (972)
102 2o8b_B DNA mismatch repair pro 99.8 4.7E-19 1.6E-23 219.9 11.8 172 683-908 749-939 (1022)
103 2jeo_A Uridine-cytidine kinase 99.8 4.7E-20 1.6E-24 194.9 1.4 168 699-911 11-187 (245)
104 1lw7_A Transcriptional regulat 99.8 9.2E-21 3.1E-25 212.5 -6.0 148 702-852 157-329 (365)
105 1w1w_A Structural maintenance 99.7 2.4E-18 8.1E-23 197.3 11.6 73 824-896 333-410 (430)
106 1tf7_A KAIC; homohexamer, hexa 99.7 2.2E-18 7.6E-23 202.3 11.1 170 685-899 258-444 (525)
107 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.6E-18 1.6E-22 163.4 10.5 88 813-900 41-142 (148)
108 2ygr_A Uvrabc system protein A 99.7 5.9E-18 2E-22 205.0 14.0 139 771-918 465-623 (993)
109 1pzn_A RAD51, DNA repair and r 99.7 4.7E-19 1.6E-23 196.3 2.7 166 702-910 119-314 (349)
110 1ewq_A DNA mismatch repair pro 99.7 3.2E-18 1.1E-22 206.2 6.4 147 682-889 548-704 (765)
111 4a74_A DNA repair and recombin 99.7 3.8E-18 1.3E-22 178.4 5.6 148 709-899 21-201 (231)
112 3thx_A DNA mismatch repair pro 99.7 1.5E-17 5.3E-22 203.6 11.2 167 683-909 630-811 (934)
113 2ehv_A Hypothetical protein PH 99.7 5.7E-19 2E-23 187.2 -2.2 180 685-896 7-206 (251)
114 2gza_A Type IV secretion syste 99.7 2E-19 6.8E-24 200.4 -8.0 149 686-838 137-301 (361)
115 3jvv_A Twitching mobility prot 99.7 5.1E-18 1.7E-22 187.5 3.3 147 688-898 92-246 (356)
116 1rj9_A FTSY, signal recognitio 99.7 1E-17 3.5E-22 181.3 5.0 163 712-899 101-284 (304)
117 1pui_A ENGB, probable GTP-bind 99.7 7.2E-19 2.5E-23 181.1 -4.2 169 685-871 4-197 (210)
118 2qag_C Septin-7; cell cycle, c 99.7 3.1E-18 1.1E-22 192.7 -0.5 166 683-886 10-180 (418)
119 3szr_A Interferon-induced GTP- 99.7 5.4E-19 1.9E-23 209.9 -7.5 190 684-910 10-236 (608)
120 3kta_B Chromosome segregation 99.7 1.6E-16 5.5E-21 156.7 10.9 80 821-900 61-146 (173)
121 1odf_A YGR205W, hypothetical 3 99.7 5.6E-19 1.9E-23 190.1 -7.5 130 712-859 30-169 (290)
122 2qnr_A Septin-2, protein NEDD5 99.6 6.1E-18 2.1E-22 183.7 -2.2 162 688-885 2-169 (301)
123 1s96_A Guanylate kinase, GMP k 99.6 6.5E-17 2.2E-21 166.8 0.1 142 708-911 11-160 (219)
124 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.3E-16 7.9E-21 165.1 3.9 165 700-898 9-192 (235)
125 3c8u_A Fructokinase; YP_612366 99.6 1.2E-18 4E-23 179.4 -14.6 146 710-883 19-183 (208)
126 2qag_B Septin-6, protein NEDD5 99.6 2.8E-16 9.5E-21 175.6 3.3 180 684-882 16-218 (427)
127 3thx_B DNA mismatch repair pro 99.6 6.8E-16 2.3E-20 188.5 6.4 160 683-892 639-805 (918)
128 1nlf_A Regulatory protein REPA 99.6 3.8E-15 1.3E-19 160.4 9.9 151 709-886 26-184 (279)
129 1nij_A Hypothetical protein YJ 99.6 6.8E-17 2.3E-21 177.1 -4.2 149 714-883 5-189 (318)
130 2cvh_A DNA repair and recombin 99.6 7.7E-15 2.6E-19 152.0 11.0 151 701-898 7-185 (220)
131 1wb9_A DNA mismatch repair pro 99.5 1.9E-15 6.6E-20 183.1 4.6 166 683-903 576-750 (800)
132 1zp6_A Hypothetical protein AT 99.5 3.6E-16 1.2E-20 158.4 -2.3 151 709-882 5-159 (191)
133 1n0w_A DNA repair protein RAD5 99.5 3.3E-14 1.1E-18 149.6 7.6 146 709-898 20-209 (243)
134 2qm8_A GTPase/ATPase; G protei 99.4 1.7E-16 5.9E-21 174.8 -12.8 180 685-871 30-259 (337)
135 2yhs_A FTSY, cell division pro 99.4 6.9E-15 2.3E-19 166.1 -0.3 156 704-885 284-450 (503)
136 3auy_A DNA double-strand break 99.4 4.8E-13 1.6E-17 149.9 10.4 74 823-896 279-359 (371)
137 2bdt_A BH3686; alpha-beta prot 99.4 2.7E-16 9.3E-21 159.1 -14.8 166 713-910 2-183 (189)
138 1p9r_A General secretion pathw 99.4 9.4E-16 3.2E-20 172.7 -12.8 129 702-847 158-314 (418)
139 2oap_1 GSPE-2, type II secreti 99.4 1.8E-15 6E-20 175.1 -11.4 174 701-890 248-458 (511)
140 1htw_A HI0065; nucleotide-bind 99.4 3.6E-14 1.2E-18 138.1 -1.5 86 688-782 11-96 (158)
141 3lda_A DNA repair protein RAD5 99.4 7.3E-13 2.5E-17 148.3 8.3 147 709-899 174-364 (400)
142 1sxj_E Activator 1 40 kDa subu 99.3 5.1E-13 1.7E-17 149.1 6.8 139 715-886 38-177 (354)
143 2rcn_A Probable GTPase ENGC; Y 99.3 9.5E-14 3.3E-18 152.2 0.3 121 703-840 206-329 (358)
144 2bbw_A Adenylate kinase 4, AK4 99.3 2.1E-14 7.1E-19 151.7 -4.9 148 712-871 26-197 (246)
145 3e70_C DPA, signal recognition 99.3 9.8E-13 3.4E-17 143.5 7.2 166 709-901 125-307 (328)
146 2kjq_A DNAA-related protein; s 99.3 4E-12 1.4E-16 122.7 8.3 91 702-882 30-124 (149)
147 3nh6_A ATP-binding cassette SU 99.3 5.7E-13 1.9E-17 143.7 1.6 89 235-326 13-101 (306)
148 2yv5_A YJEQ protein; hydrolase 99.2 1.9E-12 6.4E-17 140.5 2.0 115 709-837 161-300 (302)
149 3ec2_A DNA replication protein 99.2 2E-11 6.9E-16 122.0 7.8 111 707-885 32-145 (180)
150 2x8a_A Nuclear valosin-contain 99.2 1.2E-13 4.1E-18 147.8 -10.2 143 701-867 34-190 (274)
151 1udx_A The GTP-binding protein 99.2 6.5E-12 2.2E-16 141.2 2.6 154 703-881 147-306 (416)
152 3lnc_A Guanylate kinase, GMP k 99.2 7.5E-14 2.6E-18 145.9 -12.3 185 702-910 16-223 (231)
153 1sq5_A Pantothenate kinase; P- 99.1 4.5E-13 1.5E-17 146.0 -7.4 139 683-857 36-199 (308)
154 1cke_A CK, MSSA, protein (cyti 99.1 1.7E-12 5.7E-17 135.1 -5.1 128 713-853 5-151 (227)
155 2v9p_A Replication protein E1; 99.1 1.8E-12 6.1E-17 139.2 -6.8 93 227-326 55-147 (305)
156 1ls1_A Signal recognition part 99.0 3.2E-10 1.1E-14 122.2 9.9 142 685-880 77-219 (295)
157 1u0l_A Probable GTPase ENGC; p 99.0 3.5E-11 1.2E-15 130.5 2.0 104 708-812 164-290 (301)
158 4e22_A Cytidylate kinase; P-lo 99.0 2.1E-11 7.1E-16 128.9 -0.8 109 701-820 18-144 (252)
159 1vma_A Cell division protein F 99.0 4.4E-10 1.5E-14 121.3 8.0 97 707-853 98-197 (306)
160 2px0_A Flagellar biosynthesis 99.0 6.7E-10 2.3E-14 119.7 8.5 138 711-902 103-246 (296)
161 3tr0_A Guanylate kinase, GMP k 99.0 2.1E-10 7.1E-15 117.1 3.9 71 707-781 1-72 (205)
162 3euj_A Chromosome partition pr 99.0 1.9E-10 6.6E-15 130.7 3.9 64 686-755 8-71 (483)
163 2ixe_A Antigen peptide transpo 99.0 3.7E-10 1.3E-14 120.1 5.5 52 275-326 15-66 (271)
164 1t9h_A YLOQ, probable GTPase E 98.9 3.6E-11 1.2E-15 129.4 -2.7 97 708-806 168-288 (307)
165 3tif_A Uncharacterized ABC tra 98.9 1.9E-10 6.6E-15 119.8 2.5 50 277-326 2-52 (235)
166 2ghi_A Transport protein; mult 98.9 4.3E-10 1.5E-14 119.0 4.8 52 275-326 16-67 (260)
167 2ff7_A Alpha-hemolysin translo 98.9 5.3E-10 1.8E-14 117.3 4.4 51 275-326 6-56 (247)
168 2cbz_A Multidrug resistance-as 98.9 6.2E-10 2.1E-14 116.1 4.7 50 276-326 3-52 (237)
169 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 6.4E-12 2.2E-16 139.8 -11.2 169 709-906 16-208 (392)
170 2pze_A Cystic fibrosis transme 98.9 6E-10 2.1E-14 115.6 4.3 51 275-326 5-55 (229)
171 2ius_A DNA translocase FTSK; n 98.9 6.1E-11 2.1E-15 135.8 -4.3 160 705-884 159-343 (512)
172 3gfo_A Cobalt import ATP-bindi 98.9 7.3E-10 2.5E-14 117.8 4.3 49 276-326 7-55 (275)
173 1mv5_A LMRA, multidrug resista 98.9 8.2E-10 2.8E-14 115.7 3.9 48 277-326 2-49 (243)
174 2pcj_A ABC transporter, lipopr 98.8 8.4E-10 2.9E-14 114.1 3.3 48 276-326 4-51 (224)
175 2ihy_A ABC transporter, ATP-bi 98.8 1.2E-09 4.2E-14 116.5 3.4 49 275-326 20-68 (279)
176 1sgw_A Putative ABC transporte 98.8 1.3E-09 4.6E-14 111.3 3.6 47 276-326 10-56 (214)
177 3gd7_A Fusion complex of cysti 98.8 1.9E-09 6.6E-14 119.9 5.1 51 275-326 18-68 (390)
178 1in4_A RUVB, holliday junction 98.8 1.8E-11 6.2E-16 135.1 -11.4 142 701-871 32-193 (334)
179 2r6a_A DNAB helicase, replicat 98.8 9.3E-10 3.2E-14 126.5 2.3 178 701-901 191-402 (454)
180 2dr3_A UPF0273 protein PH0284; 98.8 2.5E-09 8.7E-14 112.3 5.3 166 702-897 11-196 (247)
181 4g1u_C Hemin import ATP-bindin 98.8 1.4E-09 4.9E-14 115.2 3.4 48 276-326 11-58 (266)
182 3a00_A Guanylate kinase, GMP k 98.8 9.8E-10 3.3E-14 110.3 2.0 127 713-850 1-169 (186)
183 1ji0_A ABC transporter; ATP bi 98.8 1.5E-09 5.1E-14 113.4 3.4 48 276-326 6-53 (240)
184 3tui_C Methionine import ATP-b 98.8 1.4E-09 4.9E-14 119.2 3.3 52 275-326 23-75 (366)
185 2olj_A Amino acid ABC transpor 98.8 1.7E-09 5.7E-14 114.3 3.4 48 276-326 24-71 (263)
186 1iy2_A ATP-dependent metallopr 98.8 1E-11 3.6E-16 133.4 -13.8 139 686-853 51-196 (278)
187 1vpl_A ABC transporter, ATP-bi 98.8 1.8E-09 6.1E-14 113.7 3.6 49 275-326 14-62 (256)
188 1b0u_A Histidine permease; ABC 98.8 1.7E-09 5.9E-14 114.4 3.4 48 276-326 6-53 (262)
189 1g6h_A High-affinity branched- 98.8 1.5E-09 5.3E-14 114.6 3.0 48 276-326 7-54 (257)
190 2zr9_A Protein RECA, recombina 98.8 1.5E-08 5.1E-13 111.7 10.7 143 709-905 57-237 (349)
191 1oix_A RAS-related protein RAB 98.8 1.5E-10 5.3E-15 116.8 -4.8 140 715-870 31-189 (191)
192 2d2e_A SUFC protein; ABC-ATPas 98.8 1.8E-09 6.2E-14 113.5 3.2 49 276-327 3-51 (250)
193 2yz2_A Putative ABC transporte 98.8 2.5E-09 8.5E-14 113.5 3.8 50 277-326 3-54 (266)
194 2zu0_C Probable ATP-dependent 98.8 2.4E-09 8.2E-14 113.7 3.2 49 276-327 20-68 (267)
195 2dy1_A Elongation factor G; tr 98.7 4.5E-09 1.5E-13 126.1 5.8 75 707-782 3-79 (665)
196 3fvq_A Fe(3+) IONS import ATP- 98.7 2.6E-09 8.7E-14 117.1 3.3 48 276-326 4-51 (359)
197 3ney_A 55 kDa erythrocyte memb 98.7 1.7E-09 5.8E-14 108.4 1.3 83 708-800 14-109 (197)
198 1ixz_A ATP-dependent metallopr 98.7 1.9E-11 6.4E-16 129.6 -13.8 141 685-854 26-173 (254)
199 2nq2_C Hypothetical ABC transp 98.7 3.4E-09 1.2E-13 111.5 3.7 50 276-327 4-53 (253)
200 3rlf_A Maltose/maltodextrin im 98.7 3.3E-09 1.1E-13 117.1 3.3 48 276-326 3-50 (381)
201 1z47_A CYSA, putative ABC-tran 98.7 4.6E-09 1.6E-13 115.2 4.1 50 275-326 13-62 (355)
202 1qhl_A Protein (cell division 98.7 5.6E-10 1.9E-14 114.9 -3.4 75 684-769 9-91 (227)
203 2it1_A 362AA long hypothetical 98.7 7.8E-09 2.7E-13 113.8 4.0 48 276-326 3-50 (362)
204 2yyz_A Sugar ABC transporter, 98.7 7.2E-09 2.5E-13 114.0 3.4 48 276-326 3-50 (359)
205 2bbs_A Cystic fibrosis transme 98.6 8.4E-09 2.9E-13 110.5 3.4 48 274-326 38-85 (290)
206 1v43_A Sugar-binding transport 98.6 8.6E-09 2.9E-13 113.9 3.3 48 276-326 11-58 (372)
207 1kgd_A CASK, peripheral plasma 98.6 4.4E-09 1.5E-13 104.9 0.8 81 711-799 3-94 (180)
208 1g29_1 MALK, maltose transport 98.6 9.1E-09 3.1E-13 113.9 3.3 48 276-326 3-50 (372)
209 3d31_A Sulfate/molybdate ABC t 98.6 9.9E-09 3.4E-13 112.5 2.9 46 277-326 2-47 (348)
210 2qt1_A Nicotinamide riboside k 98.6 7.1E-09 2.4E-13 105.9 1.3 54 705-784 13-66 (207)
211 3k1j_A LON protease, ATP-depen 98.6 1.9E-09 6.4E-14 128.5 -3.7 158 700-870 47-228 (604)
212 2pjz_A Hypothetical protein ST 98.6 1.1E-08 3.8E-13 108.0 2.5 50 277-327 2-52 (263)
213 2qi9_C Vitamin B12 import ATP- 98.6 1.4E-08 4.9E-13 106.3 3.3 44 276-326 4-47 (249)
214 1oxx_K GLCV, glucose, ABC tran 98.6 8.5E-09 2.9E-13 113.5 1.2 48 276-326 3-52 (353)
215 1svm_A Large T antigen; AAA+ f 98.6 7.4E-10 2.5E-14 122.8 -7.7 138 701-853 157-312 (377)
216 2onk_A Molybdate/tungstate ABC 98.5 2.5E-08 8.4E-13 104.0 3.0 44 277-326 2-45 (240)
217 2f9l_A RAB11B, member RAS onco 98.5 4.4E-08 1.5E-12 99.2 3.6 135 715-870 7-165 (199)
218 3kta_A Chromosome segregation 98.4 3.1E-08 1E-12 98.8 0.5 99 704-804 18-136 (182)
219 2ce7_A Cell division protein F 98.4 4.9E-07 1.7E-11 103.2 8.9 113 702-886 40-167 (476)
220 3t34_A Dynamin-related protein 98.4 1.6E-07 5.4E-12 104.5 4.3 44 701-747 25-70 (360)
221 3cr8_A Sulfate adenylyltranfer 98.3 4.2E-08 1.4E-12 114.1 -2.4 89 709-802 365-468 (552)
222 3uie_A Adenylyl-sulfate kinase 98.3 2.7E-08 9.1E-13 101.0 -3.7 51 701-752 13-65 (200)
223 3nwj_A ATSK2; P loop, shikimat 98.3 5.2E-08 1.8E-12 101.9 -1.6 53 683-737 16-72 (250)
224 4eun_A Thermoresistant glucoki 98.3 1.1E-07 3.7E-12 96.5 0.6 60 707-771 23-82 (200)
225 1zu4_A FTSY; GTPase, signal re 98.3 2E-07 6.9E-12 101.3 2.3 69 702-770 94-172 (320)
226 2j41_A Guanylate kinase; GMP, 98.3 1.9E-07 6.6E-12 95.0 1.9 61 708-771 1-61 (207)
227 3vaa_A Shikimate kinase, SK; s 98.3 3E-07 1E-11 93.1 3.0 45 693-737 5-49 (199)
228 2qtf_A Protein HFLX, GTP-bindi 98.2 4.5E-07 1.6E-11 100.4 3.9 139 715-871 181-352 (364)
229 2dhr_A FTSH; AAA+ protein, hex 98.2 3.1E-08 1E-12 113.8 -6.2 140 686-854 42-188 (499)
230 1z6g_A Guanylate kinase; struc 98.2 2.3E-07 7.8E-12 95.4 0.5 34 293-326 11-44 (218)
231 3hr8_A Protein RECA; alpha and 98.2 3.7E-06 1.3E-10 92.1 10.1 59 709-770 57-116 (356)
232 1jjv_A Dephospho-COA kinase; P 98.2 1E-06 3.4E-11 89.7 4.5 125 715-896 4-131 (206)
233 2e87_A Hypothetical protein PH 98.1 3.7E-06 1.3E-10 93.3 9.1 62 822-884 229-293 (357)
234 3tau_A Guanylate kinase, GMP k 98.1 3.4E-07 1.1E-11 93.4 0.5 81 711-799 6-97 (208)
235 2eyu_A Twitching motility prot 98.1 8.4E-07 2.9E-11 93.6 2.2 59 832-896 88-146 (261)
236 2vp4_A Deoxynucleoside kinase; 98.1 2.2E-07 7.4E-12 96.5 -2.7 63 708-774 15-87 (230)
237 4gp7_A Metallophosphoesterase; 98.1 8.6E-07 3E-11 87.3 1.8 30 297-326 1-30 (171)
238 3nwj_A ATSK2; P loop, shikimat 98.1 2.6E-07 8.8E-12 96.6 -2.4 48 276-325 17-68 (250)
239 3vaa_A Shikimate kinase, SK; s 98.0 7.8E-07 2.7E-11 90.0 0.8 42 284-325 4-45 (199)
240 3tqc_A Pantothenate kinase; bi 98.0 1.9E-07 6.5E-12 101.0 -4.0 123 701-857 74-211 (321)
241 2jeo_A Uridine-cytidine kinase 98.0 8.2E-07 2.8E-11 93.1 0.6 37 290-326 10-46 (245)
242 2xau_A PRE-mRNA-splicing facto 98.0 3.9E-06 1.3E-10 102.2 6.6 68 823-890 189-260 (773)
243 1htw_A HI0065; nucleotide-bind 98.0 5.4E-07 1.9E-11 87.2 -1.0 44 280-326 11-54 (158)
244 2z43_A DNA repair and recombin 98.0 3.4E-06 1.2E-10 92.2 4.9 28 709-736 103-130 (324)
245 2ffh_A Protein (FFH); SRP54, s 98.0 1.4E-05 4.7E-10 89.7 9.8 181 687-900 79-275 (425)
246 3ice_A Transcription terminati 98.0 9.3E-07 3.2E-11 96.0 -0.3 55 682-738 131-199 (422)
247 2gza_A Type IV secretion syste 98.0 2.4E-07 8.2E-12 102.8 -5.3 48 278-326 137-196 (361)
248 1znw_A Guanylate kinase, GMP k 97.9 2.1E-06 7E-11 87.5 0.9 33 292-326 9-41 (207)
249 3aez_A Pantothenate kinase; tr 97.9 2.6E-07 8.9E-12 100.1 -6.4 49 272-325 39-110 (312)
250 4a1f_A DNAB helicase, replicat 97.9 3.3E-05 1.1E-09 84.0 10.0 37 702-738 35-71 (338)
251 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5E-10 89.6 7.3 41 712-752 96-136 (433)
252 2qag_B Septin-6, protein NEDD5 97.9 1.4E-06 4.9E-11 97.3 -1.3 47 276-327 16-64 (427)
253 2pt7_A CAG-ALFA; ATPase, prote 97.8 4.4E-07 1.5E-11 99.3 -5.6 43 279-327 151-193 (330)
254 1pui_A ENGB, probable GTP-bind 97.8 2.7E-06 9.4E-11 86.5 0.5 45 277-327 4-48 (210)
255 3lnc_A Guanylate kinase, GMP k 97.8 3.8E-06 1.3E-10 87.1 1.4 35 292-326 14-48 (231)
256 1rz3_A Hypothetical protein rb 97.8 6E-06 2.1E-10 83.5 2.8 48 710-757 19-66 (201)
257 3m6a_A ATP-dependent protease 97.8 4.6E-06 1.6E-10 97.7 1.6 58 687-748 86-143 (543)
258 2dpy_A FLII, flagellum-specifi 97.8 1.6E-06 5.6E-11 98.2 -2.2 49 275-326 130-178 (438)
259 3ice_A Transcription terminati 97.8 2.5E-06 8.6E-11 92.7 -1.3 55 269-325 126-194 (422)
260 1uf9_A TT1252 protein; P-loop, 97.7 2.4E-06 8.4E-11 86.4 -2.0 34 713-751 8-41 (203)
261 1fnn_A CDC6P, cell division co 97.7 9.9E-05 3.4E-09 82.5 10.6 45 841-886 124-172 (389)
262 2z4s_A Chromosomal replication 97.7 1.2E-05 4E-10 91.7 2.7 66 842-907 194-264 (440)
263 1v5w_A DMC1, meiotic recombina 97.7 2.6E-05 8.8E-10 85.8 5.2 28 709-736 118-145 (343)
264 1sq5_A Pantothenate kinase; P- 97.7 9.9E-07 3.4E-11 95.7 -6.3 48 274-326 35-101 (308)
265 1knq_A Gluconate kinase; ALFA/ 97.6 1.9E-05 6.4E-10 77.8 3.2 38 711-752 6-43 (175)
266 2npi_A Protein CLP1; CLP1-PCF1 97.6 1.2E-06 4.1E-11 99.9 -6.7 42 276-326 118-159 (460)
267 2obl_A ESCN; ATPase, hydrolase 97.6 5E-06 1.7E-10 91.3 -2.2 48 276-326 45-92 (347)
268 2pez_A Bifunctional 3'-phospho 97.6 1E-05 3.5E-10 80.1 0.1 42 711-753 3-46 (179)
269 3euj_A Chromosome partition pr 97.5 2.4E-05 8.4E-10 88.9 1.6 76 816-896 371-464 (483)
270 1ega_A Protein (GTP-binding pr 97.5 7.4E-05 2.5E-09 80.6 5.2 152 712-892 7-169 (301)
271 3tr0_A Guanylate kinase, GMP k 97.5 2.1E-05 7.2E-10 79.5 0.9 29 299-327 1-29 (205)
272 3b9p_A CG5977-PA, isoform A; A 97.4 0.00031 1E-08 75.5 9.6 70 827-896 98-187 (297)
273 1sxj_C Activator 1 40 kDa subu 97.4 2.2E-05 7.5E-10 86.4 0.2 42 701-742 32-75 (340)
274 3b85_A Phosphate starvation-in 97.4 1.9E-05 6.6E-10 80.0 -0.3 31 292-326 13-43 (208)
275 1ypw_A Transitional endoplasmi 97.4 3E-05 1E-09 95.0 1.1 39 708-748 233-271 (806)
276 3lxx_A GTPase IMAP family memb 97.4 0.00056 1.9E-08 70.9 10.7 28 715-742 31-58 (239)
277 1mky_A Probable GTP-binding pr 97.4 6.2E-05 2.1E-09 85.8 3.5 61 714-774 181-253 (439)
278 2qby_A CDC6 homolog 1, cell di 97.4 8.3E-05 2.8E-09 82.9 4.3 30 711-740 43-72 (386)
279 1tq4_A IIGP1, interferon-induc 97.4 1.2E-05 4E-10 90.0 -2.6 36 292-327 36-91 (413)
280 2o8b_B DNA mismatch repair pro 97.3 0.00026 9E-09 88.1 8.5 48 275-324 749-808 (1022)
281 3bh0_A DNAB-like replicative h 97.3 0.0003 1E-08 76.2 7.3 34 702-735 57-90 (315)
282 1f6b_A SAR1; gtpases, N-termin 97.3 4.8E-05 1.6E-09 76.5 0.9 56 691-749 6-69 (198)
283 2qag_C Septin-7; cell cycle, c 97.3 4.7E-05 1.6E-09 85.4 0.8 44 275-327 10-53 (418)
284 2p67_A LAO/AO transport system 97.3 2.9E-05 1E-09 85.3 -0.9 52 701-752 44-95 (341)
285 2www_A Methylmalonic aciduria 97.3 7.7E-05 2.6E-09 82.1 2.3 44 711-754 72-115 (349)
286 2ehv_A Hypothetical protein PH 97.3 4.4E-05 1.5E-09 79.8 0.2 43 277-326 7-51 (251)
287 1lv7_A FTSH; alpha/beta domain 97.3 0.0012 4E-08 69.3 11.2 44 703-750 37-80 (257)
288 3llm_A ATP-dependent RNA helic 97.2 0.00015 5.2E-09 75.1 4.1 133 709-874 72-209 (235)
289 1u94_A RECA protein, recombina 97.2 0.0011 3.8E-08 72.8 11.1 39 710-748 60-99 (356)
290 3jvv_A Twitching mobility prot 97.2 6.3E-05 2.2E-09 82.7 1.1 46 280-326 92-144 (356)
291 4ag6_A VIRB4 ATPase, type IV s 97.2 0.0018 6E-08 72.6 13.0 58 841-898 261-335 (392)
292 1m7g_A Adenylylsulfate kinase; 97.2 5.8E-05 2E-09 76.8 0.4 44 708-751 20-65 (211)
293 1lvg_A Guanylate kinase, GMP k 97.2 5.6E-05 1.9E-09 76.2 0.3 24 303-326 2-25 (198)
294 4eaq_A DTMP kinase, thymidylat 97.2 0.00013 4.5E-09 75.2 2.9 45 703-748 13-60 (229)
295 1kag_A SKI, shikimate kinase I 97.2 0.00014 4.9E-09 71.1 2.9 34 712-749 3-36 (173)
296 3thx_A DNA mismatch repair pro 97.2 0.00051 1.7E-08 84.5 8.2 51 275-325 630-682 (934)
297 3kta_A Chromosome segregation 97.2 0.00011 3.7E-09 72.8 1.7 29 296-325 18-46 (182)
298 1cr0_A DNA primase/helicase; R 97.1 6.8E-05 2.3E-09 80.7 0.2 34 293-326 23-56 (296)
299 1s96_A Guanylate kinase, GMP k 97.1 8.4E-05 2.9E-09 76.0 0.8 27 301-327 12-38 (219)
300 3b9q_A Chloroplast SRP recepto 97.1 8E-05 2.7E-09 80.1 0.7 31 296-326 91-121 (302)
301 3c8u_A Fructokinase; YP_612366 97.1 9.3E-05 3.2E-09 75.1 1.1 25 302-326 19-43 (208)
302 3uie_A Adenylyl-sulfate kinase 97.1 5.1E-05 1.7E-09 76.6 -1.0 36 291-326 11-46 (200)
303 4aby_A DNA repair protein RECN 97.1 8E-05 2.7E-09 84.3 0.5 32 293-325 49-80 (415)
304 2qor_A Guanylate kinase; phosp 97.1 0.0001 3.4E-09 74.6 1.1 53 709-761 8-71 (204)
305 1m2o_B GTP-binding protein SAR 97.1 0.00025 8.4E-09 70.7 3.9 33 702-735 13-45 (190)
306 2j41_A Guanylate kinase; GMP, 97.1 9.8E-05 3.3E-09 74.6 0.9 28 300-327 1-28 (207)
307 3r20_A Cytidylate kinase; stru 97.1 3.8E-05 1.3E-09 79.0 -2.2 69 713-781 9-95 (233)
308 2qm8_A GTPase/ATPase; G protei 97.1 6E-05 2.1E-09 82.5 -1.0 47 277-326 30-76 (337)
309 2gj8_A MNME, tRNA modification 97.1 0.0003 1E-08 68.8 3.9 27 711-737 2-28 (172)
310 1kgd_A CASK, peripheral plasma 97.0 0.00012 4.2E-09 72.4 0.8 25 303-327 3-27 (180)
311 1l8q_A Chromosomal replication 97.0 0.00071 2.4E-08 73.7 7.0 28 712-739 36-63 (324)
312 2yhs_A FTSY, cell division pro 97.0 0.00011 3.9E-09 83.1 0.6 32 295-326 283-314 (503)
313 2w58_A DNAI, primosome compone 97.0 0.0006 2E-08 68.6 5.8 27 714-740 55-81 (202)
314 1zp6_A Hypothetical protein AT 97.0 0.00014 4.9E-09 72.5 0.5 26 301-326 5-30 (191)
315 4dcu_A GTP-binding protein ENG 96.9 0.00055 1.9E-08 78.3 5.2 57 827-886 87-144 (456)
316 2og2_A Putative signal recogni 96.9 0.00016 5.6E-09 79.3 0.6 31 296-326 148-178 (359)
317 1svm_A Large T antigen; AAA+ f 96.9 0.0001 3.6E-09 81.4 -0.9 35 292-326 156-190 (377)
318 3h4m_A Proteasome-activating n 96.9 0.0019 6.6E-08 68.7 9.0 28 710-737 48-75 (285)
319 3lxw_A GTPase IMAP family memb 96.9 0.0011 3.8E-08 69.1 6.9 59 826-885 86-151 (247)
320 4a74_A DNA repair and recombin 96.9 0.00018 6.1E-09 74.0 0.7 26 301-326 21-46 (231)
321 4e22_A Cytidylate kinase; P-lo 96.9 0.00019 6.4E-09 75.3 0.7 32 292-326 17-48 (252)
322 3asz_A Uridine kinase; cytidin 96.9 0.0002 6.7E-09 72.8 0.5 25 302-326 3-27 (211)
323 3bos_A Putative DNA replicatio 96.8 0.00088 3E-08 69.0 5.3 28 712-739 51-78 (242)
324 2i1q_A DNA repair and recombin 96.8 0.002 6.9E-08 70.0 8.3 27 709-735 94-120 (322)
325 3ney_A 55 kDa erythrocyte memb 96.8 0.00025 8.6E-09 70.8 0.9 29 299-327 13-41 (197)
326 1j8m_F SRP54, signal recogniti 96.8 0.00021 7.2E-09 76.6 0.4 50 704-754 89-139 (297)
327 2oap_1 GSPE-2, type II secreti 96.8 0.00011 3.7E-09 84.9 -2.1 35 292-326 247-281 (511)
328 1njg_A DNA polymerase III subu 96.8 0.00062 2.1E-08 70.0 3.9 45 841-886 125-169 (250)
329 2jaq_A Deoxyguanosine kinase; 96.8 7.6E-05 2.6E-09 75.2 -3.1 70 715-784 2-87 (205)
330 3thx_B DNA mismatch repair pro 96.7 0.00026 9E-09 86.8 0.5 51 275-325 639-693 (918)
331 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00076 2.6E-08 64.3 3.6 30 704-734 15-44 (149)
332 4fcw_A Chaperone protein CLPB; 96.7 0.0036 1.2E-07 67.4 9.4 30 714-743 48-77 (311)
333 1ewq_A DNA mismatch repair pro 96.7 0.0012 4E-08 79.8 5.7 47 274-325 548-596 (765)
334 1p9r_A General secretion pathw 96.7 5.8E-05 2E-09 84.8 -5.3 31 294-326 158-188 (418)
335 2yvu_A Probable adenylyl-sulfa 96.7 0.00035 1.2E-08 69.3 0.6 40 709-748 9-49 (186)
336 1wb9_A DNA mismatch repair pro 96.6 0.00048 1.6E-08 83.6 1.8 48 275-325 576-627 (800)
337 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.00029 1E-08 72.4 -0.1 35 292-326 9-44 (235)
338 3tau_A Guanylate kinase, GMP k 96.6 0.00041 1.4E-08 70.3 0.9 25 303-327 6-30 (208)
339 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00083 2.8E-08 74.3 3.3 41 709-749 18-69 (396)
340 2qnr_A Septin-2, protein NEDD5 96.6 0.00036 1.2E-08 75.1 0.3 38 280-326 2-39 (301)
341 2qag_A Septin-2, protein NEDD5 96.6 0.0002 6.8E-09 79.2 -1.9 58 682-748 15-72 (361)
342 4eun_A Thermoresistant glucoki 96.6 0.00045 1.6E-08 69.5 0.8 27 300-326 24-50 (200)
343 3cf0_A Transitional endoplasmi 96.6 0.0055 1.9E-07 65.8 9.3 39 708-748 44-82 (301)
344 1y63_A LMAJ004144AAA protein; 96.6 0.00095 3.3E-08 66.1 3.1 32 705-736 2-33 (184)
345 2ewv_A Twitching motility prot 96.5 0.00097 3.3E-08 73.9 3.0 56 832-893 199-254 (372)
346 1lw7_A Transcriptional regulat 96.5 4.7E-05 1.6E-09 84.6 -7.7 86 824-911 258-355 (365)
347 3n70_A Transport activator; si 96.5 0.0072 2.5E-07 57.1 8.7 29 711-739 22-50 (145)
348 2x8a_A Nuclear valosin-contain 96.5 0.00029 1E-08 74.7 -1.2 33 292-326 33-65 (274)
349 1sxj_D Activator 1 41 kDa subu 96.5 0.0011 3.7E-08 73.0 3.3 44 842-886 133-176 (353)
350 3a00_A Guanylate kinase, GMP k 96.5 0.00049 1.7E-08 68.4 0.4 22 305-326 1-22 (186)
351 2wji_A Ferrous iron transport 96.5 0.002 6.7E-08 62.3 4.6 24 714-737 4-27 (165)
352 3t61_A Gluconokinase; PSI-biol 96.4 0.00099 3.4E-08 67.0 2.4 35 713-751 18-52 (202)
353 2p5t_B PEZT; postsegregational 96.4 0.00081 2.8E-08 70.4 1.7 42 709-752 28-69 (253)
354 2o5v_A DNA replication and rep 96.4 0.00075 2.6E-08 74.1 1.5 32 294-326 16-47 (359)
355 1t9h_A YLOQ, probable GTPase E 96.4 0.00028 9.5E-09 75.7 -2.0 28 300-327 168-195 (307)
356 1np6_A Molybdopterin-guanine d 96.4 0.0014 4.9E-08 64.1 3.1 38 713-750 6-46 (174)
357 2kjq_A DNAA-related protein; s 96.4 0.00097 3.3E-08 63.6 1.6 29 293-326 29-57 (149)
358 3ec2_A DNA replication protein 96.4 0.0006 2E-08 67.2 0.1 28 299-326 32-59 (180)
359 1ixz_A ATP-dependent metallopr 96.3 0.00043 1.5E-08 72.5 -1.1 44 278-326 27-70 (254)
360 2wjg_A FEOB, ferrous iron tran 96.3 0.0016 5.5E-08 64.2 3.1 23 714-736 8-30 (188)
361 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.00082 2.8E-08 74.4 1.1 30 295-325 14-43 (365)
362 2q6t_A DNAB replication FORK h 96.3 0.004 1.4E-07 70.9 6.8 128 702-856 189-324 (444)
363 1e69_A Chromosome segregation 96.3 0.0013 4.6E-08 71.4 2.4 29 297-326 17-45 (322)
364 1udx_A The GTP-binding protein 96.3 0.00079 2.7E-08 75.4 0.5 33 295-327 147-179 (416)
365 3szr_A Interferon-induced GTP- 96.3 0.00021 7.2E-09 84.6 -4.5 47 276-326 10-66 (608)
366 2vp4_A Deoxynucleoside kinase; 96.3 0.00078 2.7E-08 69.4 0.3 30 299-328 14-43 (230)
367 1qhl_A Protein (cell division 96.3 0.0001 3.5E-09 75.5 -6.2 40 276-326 9-48 (227)
368 2rcn_A Probable GTPase ENGC; Y 96.2 0.00051 1.7E-08 75.1 -1.2 33 294-327 205-237 (358)
369 2qt1_A Nicotinamide riboside k 96.2 0.00085 2.9E-08 67.8 0.5 27 300-326 16-42 (207)
370 3dm5_A SRP54, signal recogniti 96.2 0.017 5.9E-07 64.7 11.0 35 712-746 99-133 (443)
371 1iy2_A ATP-dependent metallopr 96.2 0.00058 2E-08 72.6 -0.9 43 279-326 52-94 (278)
372 1rj9_A FTSY, signal recognitio 96.2 0.001 3.6E-08 71.4 1.0 23 304-326 101-123 (304)
373 1u0l_A Probable GTPase ENGC; p 96.2 0.00078 2.7E-08 72.5 -0.1 27 300-326 164-190 (301)
374 3tqc_A Pantothenate kinase; bi 96.2 0.0005 1.7E-08 74.2 -1.7 34 292-325 73-112 (321)
375 1y63_A LMAJ004144AAA protein; 96.2 0.0011 3.8E-08 65.6 0.9 30 297-326 2-31 (184)
376 2i3b_A HCR-ntpase, human cance 96.2 0.00092 3.2E-08 66.5 0.3 22 305-326 1-22 (189)
377 1knq_A Gluconate kinase; ALFA/ 96.2 0.001 3.5E-08 65.1 0.6 24 303-326 6-29 (175)
378 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0014 4.6E-08 62.6 1.4 28 297-325 16-43 (149)
379 3uk6_A RUVB-like 2; hexameric 96.1 0.013 4.4E-07 64.7 9.6 41 711-751 68-108 (368)
380 2v1u_A Cell division control p 96.1 0.0024 8.1E-08 71.0 3.6 28 711-738 42-69 (387)
381 1ex7_A Guanylate kinase; subst 96.1 0.0023 7.9E-08 63.2 3.0 45 716-762 4-61 (186)
382 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.027 9.4E-07 58.6 11.3 26 712-737 38-63 (262)
383 2zej_A Dardarin, leucine-rich 96.0 0.0029 9.8E-08 62.4 3.3 25 715-739 4-28 (184)
384 1kag_A SKI, shikimate kinase I 96.0 0.0013 4.5E-08 64.1 0.5 22 304-325 3-24 (173)
385 1xp8_A RECA protein, recombina 96.0 0.019 6.6E-07 63.0 9.8 27 710-736 71-97 (366)
386 3d8b_A Fidgetin-like protein 1 96.0 0.025 8.6E-07 62.2 10.7 27 711-737 115-141 (357)
387 1ko7_A HPR kinase/phosphatase; 96.0 0.0043 1.5E-07 66.2 4.3 47 701-748 133-183 (314)
388 2if2_A Dephospho-COA kinase; a 96.0 0.0035 1.2E-07 63.0 3.5 21 715-735 3-23 (204)
389 2dby_A GTP-binding protein; GD 95.9 0.0023 7.8E-08 70.5 2.2 59 715-805 3-61 (368)
390 2bdt_A BH3686; alpha-beta prot 95.9 0.0013 4.4E-08 65.3 0.1 22 305-326 2-23 (189)
391 3t34_A Dynamin-related protein 95.9 0.00087 3E-08 74.2 -1.4 33 292-327 24-56 (360)
392 4eaq_A DTMP kinase, thymidylat 95.9 0.0016 5.3E-08 67.1 0.6 31 295-325 13-46 (229)
393 2yv5_A YJEQ protein; hydrolase 95.9 0.0013 4.4E-08 70.8 -0.1 27 300-326 160-186 (302)
394 1ye8_A Protein THEP1, hypothet 95.9 0.0016 5.5E-08 64.1 0.6 20 307-326 2-21 (178)
395 2cvh_A DNA repair and recombin 95.9 0.0011 3.8E-08 67.4 -0.7 34 293-326 7-41 (220)
396 3qks_A DNA double-strand break 95.9 0.0042 1.4E-07 62.5 3.6 30 704-734 15-44 (203)
397 1rz3_A Hypothetical protein rb 95.9 0.0017 5.7E-08 65.3 0.6 26 301-326 18-43 (201)
398 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0085 2.9E-07 64.0 6.0 28 708-735 118-145 (331)
399 3ihw_A Centg3; RAS, centaurin, 95.9 0.0059 2E-07 60.2 4.6 36 715-750 22-66 (184)
400 1jal_A YCHF protein; nucleotid 95.8 0.0059 2E-07 66.8 4.8 36 713-748 2-48 (363)
401 2qor_A Guanylate kinase; phosp 95.8 0.0017 5.9E-08 65.4 0.5 25 302-326 9-33 (204)
402 1w1w_A Structural maintenance 95.8 0.0022 7.5E-08 72.8 1.4 42 276-326 6-47 (430)
403 2f1r_A Molybdopterin-guanine d 95.8 0.001 3.5E-08 64.9 -1.4 21 306-326 3-23 (171)
404 3e70_C DPA, signal recognition 95.8 0.002 6.7E-08 69.9 0.7 26 301-326 125-150 (328)
405 2b8t_A Thymidine kinase; deoxy 95.7 0.012 4E-07 59.9 6.2 52 841-896 88-150 (223)
406 1pzn_A RAD51, DNA repair and r 95.7 0.0014 4.7E-08 72.0 -0.8 34 293-326 118-152 (349)
407 1zu4_A FTSY; GTPase, signal re 95.7 0.0021 7.1E-08 69.6 0.5 31 295-325 95-125 (320)
408 2bbw_A Adenylate kinase 4, AK4 95.7 0.0024 8.4E-08 66.3 0.8 23 304-326 26-48 (246)
409 1n0w_A DNA repair protein RAD5 95.6 0.0026 9E-08 65.7 1.0 27 301-327 20-46 (243)
410 3syl_A Protein CBBX; photosynt 95.6 0.073 2.5E-06 56.9 12.6 26 713-738 67-92 (309)
411 3cm0_A Adenylate kinase; ATP-b 95.6 0.0046 1.6E-07 61.0 2.7 27 711-737 2-28 (186)
412 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0014 4.9E-08 71.0 -1.1 37 701-737 10-48 (359)
413 3sop_A Neuronal-specific septi 95.6 0.0024 8.2E-08 67.4 0.4 20 307-326 4-23 (270)
414 1qhx_A CPT, protein (chloramph 95.6 0.0064 2.2E-07 59.4 3.5 26 713-738 3-28 (178)
415 2chg_A Replication factor C sm 95.6 0.04 1.4E-06 55.3 9.6 44 841-885 101-144 (226)
416 3cmw_A Protein RECA, recombina 95.5 0.056 1.9E-06 70.1 12.7 40 710-749 729-769 (1706)
417 1fzq_A ADP-ribosylation factor 95.5 0.006 2.1E-07 59.9 3.0 23 714-736 17-39 (181)
418 1gtv_A TMK, thymidylate kinase 95.5 0.0024 8.2E-08 64.6 -0.1 26 715-740 2-27 (214)
419 2pez_A Bifunctional 3'-phospho 95.4 0.003 1E-07 62.0 0.6 24 303-326 3-26 (179)
420 1cke_A CK, MSSA, protein (cyti 95.4 0.0035 1.2E-07 64.1 0.9 21 305-325 5-25 (227)
421 2r8r_A Sensor protein; KDPD, P 95.4 0.011 3.6E-07 59.9 4.3 43 839-881 81-125 (228)
422 3kb2_A SPBC2 prophage-derived 95.4 0.0068 2.3E-07 58.8 2.8 24 715-738 3-26 (173)
423 1odf_A YGR205W, hypothetical 3 95.3 0.0035 1.2E-07 66.8 0.6 22 304-325 30-51 (290)
424 3bgw_A DNAB-like replicative h 95.3 0.03 1E-06 63.4 8.3 34 703-736 187-220 (444)
425 3t15_A Ribulose bisphosphate c 95.3 0.026 8.9E-07 60.2 7.4 24 714-737 37-60 (293)
426 1q3t_A Cytidylate kinase; nucl 95.3 0.0086 2.9E-07 61.7 3.5 29 709-737 12-40 (236)
427 1gvn_B Zeta; postsegregational 95.3 0.0098 3.4E-07 63.3 4.0 34 713-748 33-66 (287)
428 3trf_A Shikimate kinase, SK; a 95.3 0.0088 3E-07 58.9 3.4 26 712-737 4-29 (185)
429 3co5_A Putative two-component 95.2 0.028 9.4E-07 52.8 6.5 27 711-737 25-51 (143)
430 3zvl_A Bifunctional polynucleo 95.2 0.065 2.2E-06 60.2 10.6 35 710-748 255-289 (416)
431 1nlf_A Regulatory protein REPA 95.2 0.0046 1.6E-07 65.6 1.0 26 301-326 26-51 (279)
432 1in4_A RUVB, holliday junction 95.1 0.0014 4.8E-08 71.7 -3.2 45 279-326 21-72 (334)
433 1f6b_A SAR1; gtpases, N-termin 95.1 0.0019 6.6E-08 64.6 -2.0 42 283-327 6-47 (198)
434 1ls1_A Signal recognition part 95.1 0.0024 8.3E-08 68.3 -1.4 42 277-325 77-118 (295)
435 1kht_A Adenylate kinase; phosp 95.1 0.011 3.8E-07 58.3 3.5 27 712-738 2-28 (192)
436 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.12 4.1E-06 55.8 11.8 27 711-737 43-69 (322)
437 3lw7_A Adenylate kinase relate 95.0 0.011 3.8E-07 57.2 3.1 19 715-733 3-21 (179)
438 1vht_A Dephospho-COA kinase; s 95.0 0.013 4.5E-07 59.4 3.7 31 713-748 4-34 (218)
439 3qks_A DNA double-strand break 94.9 0.0068 2.3E-07 60.9 1.4 28 297-325 16-43 (203)
440 1qhx_A CPT, protein (chloramph 94.9 0.0058 2E-07 59.7 0.8 22 305-326 3-24 (178)
441 3cr8_A Sulfate adenylyltranfer 94.9 0.0035 1.2E-07 72.8 -0.9 27 300-326 364-390 (552)
442 2v54_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 58.4 3.6 26 712-737 3-28 (204)
443 3lda_A DNA repair protein RAD5 94.9 0.006 2.1E-07 67.9 1.0 25 301-325 174-198 (400)
444 3cbq_A GTP-binding protein REM 94.9 0.012 4.2E-07 58.4 3.2 22 715-736 25-46 (195)
445 2rhm_A Putative kinase; P-loop 94.8 0.012 4.2E-07 58.2 3.0 27 711-737 3-29 (193)
446 1xjc_A MOBB protein homolog; s 94.8 0.011 3.8E-07 57.2 2.5 26 714-739 5-30 (169)
447 2ze6_A Isopentenyl transferase 94.8 0.012 4.1E-07 61.4 3.0 23 715-737 3-25 (253)
448 1vma_A Cell division protein F 94.8 0.006 2E-07 65.4 0.6 28 298-325 97-124 (306)
449 1jr3_A DNA polymerase III subu 94.8 0.054 1.9E-06 59.6 8.4 43 842-885 119-161 (373)
450 1m7g_A Adenylylsulfate kinase; 94.8 0.0048 1.6E-07 62.4 -0.3 26 300-325 20-45 (211)
451 2qp9_X Vacuolar protein sortin 94.7 0.063 2.2E-06 58.9 8.7 27 711-737 82-108 (355)
452 2qby_B CDC6 homolog 3, cell di 94.7 0.012 4.1E-07 65.3 2.9 25 713-737 45-69 (384)
453 2lkc_A Translation initiation 94.7 0.03 1E-06 54.2 5.3 25 712-736 7-31 (178)
454 3iij_A Coilin-interacting nucl 94.7 0.015 5E-07 57.0 3.0 27 711-737 9-35 (180)
455 2c95_A Adenylate kinase 1; tra 94.6 0.015 5.2E-07 57.6 3.1 27 711-737 7-33 (196)
456 2wwf_A Thymidilate kinase, put 94.6 0.017 5.7E-07 58.2 3.4 27 711-737 8-34 (212)
457 3io5_A Recombination and repai 94.6 0.046 1.6E-06 58.1 6.7 27 710-737 26-53 (333)
458 1via_A Shikimate kinase; struc 94.6 0.014 4.6E-07 57.0 2.5 23 715-737 6-28 (175)
459 2plr_A DTMP kinase, probable t 94.6 0.02 6.7E-07 57.5 3.8 28 712-739 3-30 (213)
460 1m2o_B GTP-binding protein SAR 94.5 0.0075 2.6E-07 59.7 0.6 33 294-327 13-45 (190)
461 2dhr_A FTSH; AAA+ protein, hex 94.5 0.0071 2.4E-07 69.3 0.4 32 293-326 54-85 (499)
462 3cmu_A Protein RECA, recombina 94.5 0.13 4.6E-06 67.5 12.0 40 710-749 380-420 (2050)
463 3t5d_A Septin-7; GTP-binding p 94.5 0.016 5.5E-07 61.1 3.0 22 715-736 10-31 (274)
464 1z2a_A RAS-related protein RAB 94.4 0.018 6.3E-07 55.0 3.1 22 715-736 7-28 (168)
465 1nn5_A Similar to deoxythymidy 94.4 0.02 6.9E-07 57.6 3.5 28 710-737 6-33 (215)
466 3cm0_A Adenylate kinase; ATP-b 94.4 0.0074 2.5E-07 59.4 0.2 23 303-325 2-24 (186)
467 1ly1_A Polynucleotide kinase; 94.4 0.019 6.4E-07 56.0 3.1 31 714-747 3-33 (181)
468 3q72_A GTP-binding protein RAD 94.4 0.018 6.2E-07 55.0 3.0 23 715-737 4-26 (166)
469 1hqc_A RUVB; extended AAA-ATPa 94.4 0.11 3.6E-06 56.0 9.4 26 712-737 37-62 (324)
470 2dr3_A UPF0273 protein PH0284; 94.4 0.0066 2.3E-07 62.7 -0.3 33 293-325 10-43 (247)
471 2erx_A GTP-binding protein DI- 94.4 0.033 1.1E-06 53.4 4.8 21 715-735 5-25 (172)
472 2zan_A Vacuolar protein sortin 94.4 0.14 4.8E-06 57.9 10.8 27 711-737 165-191 (444)
473 2yvu_A Probable adenylyl-sulfa 94.4 0.0085 2.9E-07 59.1 0.5 26 300-325 8-33 (186)
474 4ad8_A DNA repair protein RECN 94.4 0.0063 2.1E-07 70.7 -0.6 31 294-325 50-80 (517)
475 2p67_A LAO/AO transport system 94.3 0.0059 2E-07 66.8 -0.9 34 293-326 44-77 (341)
476 3kb2_A SPBC2 prophage-derived 94.3 0.0091 3.1E-07 57.8 0.6 19 307-325 3-21 (173)
477 3t61_A Gluconokinase; PSI-biol 94.3 0.009 3.1E-07 59.8 0.6 22 305-326 18-39 (202)
478 2bwj_A Adenylate kinase 5; pho 94.3 0.016 5.5E-07 57.6 2.4 28 710-737 9-36 (199)
479 3iby_A Ferrous iron transport 94.3 0.019 6.5E-07 59.9 3.0 23 715-737 3-25 (256)
480 2rhm_A Putative kinase; P-loop 94.3 0.0093 3.2E-07 59.0 0.6 23 303-325 3-25 (193)
481 1kao_A RAP2A; GTP-binding prot 94.3 0.021 7.2E-07 54.4 3.1 21 715-735 5-25 (167)
482 2ew1_A RAS-related protein RAB 94.2 0.034 1.2E-06 55.5 4.7 22 715-736 28-49 (201)
483 2nzj_A GTP-binding protein REM 94.2 0.023 7.8E-07 54.8 3.3 22 715-736 6-27 (175)
484 3pfi_A Holliday junction ATP-d 94.2 0.17 5.8E-06 54.9 10.7 25 714-738 56-80 (338)
485 2ga8_A Hypothetical 39.9 kDa p 94.2 0.005 1.7E-07 66.7 -1.6 33 293-325 10-44 (359)
486 3q85_A GTP-binding protein REM 94.2 0.023 8E-07 54.4 3.3 23 715-737 4-26 (169)
487 2ce2_X GTPase HRAS; signaling 94.2 0.022 7.5E-07 54.1 3.0 22 715-736 5-26 (166)
488 2qmh_A HPR kinase/phosphorylas 94.2 0.034 1.2E-06 54.9 4.3 34 702-736 24-57 (205)
489 2dyk_A GTP-binding protein; GT 94.2 0.023 7.9E-07 53.9 3.1 22 715-736 3-24 (161)
490 1c1y_A RAS-related protein RAP 94.2 0.023 7.9E-07 54.2 3.1 21 715-735 5-25 (167)
491 1tev_A UMP-CMP kinase; ploop, 94.2 0.024 8E-07 56.1 3.3 25 713-737 3-27 (196)
492 3iij_A Coilin-interacting nucl 94.2 0.0087 3E-07 58.7 0.0 23 303-325 9-31 (180)
493 1u8z_A RAS-related protein RAL 94.1 0.023 8E-07 54.2 3.1 22 715-736 6-27 (168)
494 1kht_A Adenylate kinase; phosp 94.1 0.011 3.7E-07 58.4 0.7 22 304-325 2-23 (192)
495 3k53_A Ferrous iron transport 94.1 0.022 7.6E-07 59.9 3.1 24 715-738 5-28 (271)
496 2vli_A Antibiotic resistance p 94.1 0.019 6.6E-07 56.2 2.4 27 711-737 3-29 (183)
497 2gj8_A MNME, tRNA modification 94.1 0.01 3.5E-07 57.7 0.4 26 303-328 2-27 (172)
498 1g16_A RAS-related protein SEC 94.1 0.023 7.9E-07 54.4 3.0 22 715-736 5-26 (170)
499 2ged_A SR-beta, signal recogni 94.1 0.024 8.2E-07 55.9 3.1 25 713-737 48-72 (193)
500 1z08_A RAS-related protein RAB 94.0 0.025 8.4E-07 54.3 3.1 22 715-736 8-29 (170)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.5e-145 Score=1393.74 Aligned_cols=922 Identities=32% Similarity=0.539 Sum_probs=801.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHH
Q 040875 2 ILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLV 81 (930)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~ 81 (930)
+++++++.+++++++..||.+.|+|+..++|..+++++++++++|||. . ++|+++|++++|++.+++++++.++.++.
T Consensus 142 ~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~-~-~~G~l~sr~~~D~~~i~~~~~~~l~~~~~ 219 (1321)
T 4f4c_A 142 YAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-N-HSGTLATKLFDNLERVKEGTGDKIGMAFQ 219 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH-T-CCTTHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999995 5 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHH
Q 040875 82 NVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLD 161 (930)
Q Consensus 82 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~ 161 (930)
.+.++++++++.|+++|.+++++++++|+++++..++++.+.+..++.++..+++.+.++|+++|||+||+|+||+.+.+
T Consensus 220 ~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 299 (1321)
T 4f4c_A 220 YLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELE 299 (1321)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHH
Q 040875 162 EFSSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYI 240 (930)
Q Consensus 162 ~~~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~ 240 (930)
+|.+..++..+...|.....++..+ ..++.+..+.+++|+|..++..+.+++|++++++.++..+..|+..+++.+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (1321)
T 4f4c_A 300 RYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVL 379 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888888777 667778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcc
Q 040875 241 SEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKST 320 (930)
Q Consensus 241 ~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKST 320 (930)
.++.+|++|++++++++|+++.....+..+...++.|+|+||+|+||++++.++|+|+||+|++||++||||||||||||
T Consensus 380 ~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 459 (1321)
T 4f4c_A 380 GTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKST 459 (1321)
T ss_dssp HHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHH
T ss_pred HHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHH
Confidence 99999999999999988777666555555556678999999999999988899999999999999999999999999999
Q ss_pred ccccccc-----------c-------------------------------------------------------------
Q 040875 321 VVSASLE-----------D------------------------------------------------------------- 328 (930)
Q Consensus 321 ll~~ll~-----------~------------------------------------------------------------- 328 (930)
|+++|++ |
T Consensus 460 ll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~ 539 (1321)
T 4f4c_A 460 IISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKT 539 (1321)
T ss_dssp HHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHc
Confidence 9999842 1
Q ss_pred -----------------CCccccccc--------------c---------------------------------------
Q 040875 329 -----------------GNLKQNNRE--------------E--------------------------------------- 338 (930)
Q Consensus 329 -----------------g~~~q~~~~--------------~--------------------------------------- 338 (930)
||||||.+. +
T Consensus 540 lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~a 619 (1321)
T 4f4c_A 540 LPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNA 619 (1321)
T ss_dssp STTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTC
T ss_pred CCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhC
Confidence 145544210 0
Q ss_pred -------c------------------------------------c-----cc----------------C-----------
Q 040875 339 -------D------------------------------------N-----KK----------------L----------- 343 (930)
Q Consensus 339 -------~------------------------------------~-----~~----------------~----------- 343 (930)
+ . +. .
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRS 699 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC----------------------------------
T ss_pred CEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhc
Confidence 0 0 00 0
Q ss_pred ------------------------------------chHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 344 ------------------------------------TAPAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMI 387 (930)
Q Consensus 344 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (930)
....+.+++...++.+..+.++.+.+.+.+.+.|.++..++.++
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 779 (1321)
T 4f4c_A 700 STIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFM 779 (1321)
T ss_dssp ----------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011233344555666677777777888888888888888887
Q ss_pred HHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHH
Q 040875 388 SVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSR 467 (930)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~r 467 (930)
+.+... +........+|.++|++++++..++.+++.+++...+.++..++|.++|++++++|++|||..++|+|+++||
T Consensus 780 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r 858 (1321)
T 4f4c_A 780 NVFAGN-PADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTR 858 (1321)
T ss_dssp HHTSSC-SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHH
T ss_pred HHhcCC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhc
Confidence 765433 2223344567888999999999999999999999999999999999999999999999999767999999999
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 468 LAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLA 547 (930)
Q Consensus 468 ls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (930)
+++|++.+++.++..+..++..++.+++.++++++.+|++++++++++|++++..+...+.......+..+..++....+
T Consensus 859 ~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1321)
T 4f4c_A 859 LATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIA 938 (1321)
T ss_dssp HHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888877766655544444445566677788889
Q ss_pred HHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHH--HH
Q 040875 548 AEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKS--LF 625 (930)
Q Consensus 548 ~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~--~~ 625 (930)
.|++.|++|||+|+.|+.+.++|.+..+...+...+..+...+...+...+..+..++++++|..++..+..+.+. ++
T Consensus 939 ~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~ 1018 (1321)
T 4f4c_A 939 IEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVL 1018 (1321)
T ss_dssp HHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHH
T ss_pred HHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHH
Confidence 9999999999999999999999999999999998888888888888888888889999999999999888766543 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceee
Q 040875 626 EIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKG 705 (930)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~ 705 (930)
.++..+.....++..+...+++++++..+.+|++++++.+++.++...+ ..+.+..|.|+|+||+|+||++++.+||+|
T Consensus 1019 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~ 1097 (1321)
T 4f4c_A 1019 RVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPERPEIEILKG 1097 (1321)
T ss_dssp HHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTSCSSCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCCCCCccccc
Confidence 3444444445567777888999999999999999999876554332221 122334589999999999998877789999
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCC
Q 040875 706 FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGA 785 (930)
Q Consensus 706 vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~ 785 (930)
+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+||.
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gl 1177 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGL 1177 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSS
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHH
Q 040875 786 -SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQ 864 (930)
Q Consensus 786 -~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~ 864 (930)
+.+++|+|+|+||+.++++|||.+||+||||+|||+|.+|||||||||||||||+|||+||||||||||||++||+.||
T Consensus 1178 d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq 1257 (1321)
T 4f4c_A 1178 DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257 (1321)
T ss_dssp CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhhhc
Q 040875 865 EALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAEQ 929 (930)
Q Consensus 865 ~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~~~ 929 (930)
++|++.++|||+|+|||||+|+++||||+|||+|+|+|+|+|+||++ ++|.|++||+.|..++
T Consensus 1258 ~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~--~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS--EKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp HHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH--CC--------------
T ss_pred HHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh--CCcHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998 6899999999997764
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.2e-124 Score=1196.61 Aligned_cols=923 Identities=34% Similarity=0.618 Sum_probs=806.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHH
Q 040875 2 ILYLACIAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLV 81 (930)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~ 81 (930)
+++++++.+++.+++..+|...++|+..++|..+++++++++++|||. . ++|+++|++++|++.+++.+...+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 191 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-H-DVGELNTRLTDDVSKINEGIGDKIGMFFQ 191 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-C-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999999999999999999995 5 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHH
Q 040875 82 NVAIFFGSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLD 161 (930)
Q Consensus 82 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~ 161 (930)
.+.++++.+++.++++|.++++.++++|+++.+..++.+...+..++.++..++..+.++|.++|||+||+|+||+.+.+
T Consensus 192 ~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 192 AMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHH
Q 040875 162 EFSSALQGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYI 240 (930)
Q Consensus 162 ~~~~~r~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~ 240 (930)
+|.+..++..+...|.....++..+ ..++....+.+++|+|..++..+.+++|.+++++..+.....++..+.+.+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAF 351 (1284)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888887777777777 667778888899999999999999999999998888888888999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcc
Q 040875 241 SEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKST 320 (930)
Q Consensus 241 ~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKST 320 (930)
.++.+|++|++++++.+|+.+.....+..++..++.|+++|++|+||++++.++|+|+||+|++||+++|||||||||||
T Consensus 352 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999877665543333333444567899999999999777778999999999999999999999999999
Q ss_pred ccccccc-----------cC------------------------------------------------------------
Q 040875 321 VVSASLE-----------DG------------------------------------------------------------ 329 (930)
Q Consensus 321 ll~~ll~-----------~g------------------------------------------------------------ 329 (930)
|+++|.+ ||
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~ 511 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999842 11
Q ss_pred ------------------Cccccccc--------------c---------------------------------------
Q 040875 330 ------------------NLKQNNRE--------------E--------------------------------------- 338 (930)
Q Consensus 330 ------------------~~~q~~~~--------------~--------------------------------------- 338 (930)
||||+... |
T Consensus 512 l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~ 591 (1284)
T 3g5u_A 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA 591 (1284)
T ss_dssp STTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTC
T ss_pred ccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 23332110 0
Q ss_pred -------ccccC----chH------H------------------------------------------------------
Q 040875 339 -------DNKKL----TAP------A------------------------------------------------------ 347 (930)
Q Consensus 339 -------~~~~~----~~~------~------------------------------------------------------ 347 (930)
+.+.. +.. .
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGP 671 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC---------------------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 000 0
Q ss_pred ---------------------HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHhhhhhHH
Q 040875 348 ---------------------FRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDH-DEIKEKTRFY 405 (930)
Q Consensus 348 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 405 (930)
++++++..++.|+.+.++.+++++.+.+.+.++++++.+++.+..... .........|
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 751 (1284)
T 3g5u_A 672 HDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLF 751 (1284)
T ss_dssp ------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHH
T ss_pred cccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHH
Confidence 001112222333344556677777788888888888888775543321 2223344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHH
Q 040875 406 SLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVAL 485 (930)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~ 485 (930)
..++++++++..+..+++.+.+...+.++..++|.++|++++++|++||+.+++++|++++|+++|++.+++.++..+..
T Consensus 752 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~ 831 (1284)
T 3g5u_A 752 SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV 831 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888899999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHH
Q 040875 486 LVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQER 565 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 565 (930)
++..+..+++.+++++..+|.+++++++++|+++++.+...++......+..+..+.....+.|++.|+++||+|+.|+.
T Consensus 832 ~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~ 911 (1284)
T 3g5u_A 832 IFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911 (1284)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999998888888888777777777888888899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 566 ILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMT 645 (930)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 645 (930)
+.++|.+..+...+...+...+.+....+...+..+..++++|+|++++..|.++.+.++.++.++.....++..+....
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 991 (1284)
T 3g5u_A 912 FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA 991 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCc
Q 040875 646 TDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsG 725 (930)
+.+.++..+.+|++++++.+++.++.......+....|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||
T Consensus 992 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 992 PDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp CCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCC
Confidence 88899999999999999876543322222222233457899999999998765567999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCC-CCCHHHHHHHHHHhcch
Q 040875 726 KSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASD-KIDESEIIEAAKAANAH 804 (930)
Q Consensus 726 KSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~-~~~d~ei~~al~~~~l~ 804 (930)
||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||||.+|++||||||.++.+. ..++++++++++.++++
T Consensus 1072 KSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~ 1151 (1284)
T 3g5u_A 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151 (1284)
T ss_dssp HHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999998652 46899999999999999
Q ss_pred hHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch
Q 040875 805 DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS 884 (930)
Q Consensus 805 ~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ 884 (930)
++++++|+||||+|||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||++
T Consensus 1152 ~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhhh
Q 040875 885 TIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTAE 928 (930)
Q Consensus 885 ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~~ 928 (930)
++.+||||+||++|+|+|+|+|+||++ ++|.|++|++.|...
T Consensus 1232 ~i~~~dri~vl~~G~i~~~g~~~~l~~--~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1232 TIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp GGGSCSEEEEEETBEEEEEECHHHHHH--SCSHHHHHHHHHC--
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHh--CCCHHHHHHHHHhhc
Confidence 999999999999999999999999998 689999999988654
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-94 Score=927.92 Aligned_cols=578 Identities=36% Similarity=0.591 Sum_probs=525.1
Q ss_pred hHHHHHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------------ChhHHhhhhhHH
Q 040875 345 APAFRRLLALN-IREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLK------------------DHDEIKEKTRFY 405 (930)
Q Consensus 345 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~ 405 (930)
..++++++++. +.++..+.+|.+++++.|+..|+++++++.+++.+... ...........+
T Consensus 59 ~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1321)
T 4f4c_A 59 KVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNV 138 (1321)
T ss_dssp CCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHH
T ss_pred CCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHH
Confidence 34566777664 34466677888888899999999988888877654210 011222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHH
Q 040875 406 SLCFFGLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVAL 485 (930)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~ 485 (930)
++.+++++++..++.+++.+++.+.+++...++|.++|++++++|++||| ++++|++++|+++|++.+++.+...+..
T Consensus 139 ~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd--~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 139 VWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--HTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999999999999999999999999998 6889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHH
Q 040875 486 LVQTLSSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQER 565 (930)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~ 565 (930)
++..+..+++.++++++.+|++++++++++|+.+++.....+..++..++..+..++..+.+.|++.|+++||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHH
Confidence 99999999999999999999999999999999998888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 566 ILKMLEKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMT 645 (930)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 645 (930)
+.++|.+..++..+...+.....++......++..+..++++|+|+.++..|.+++|.+++++.++.....++..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCc
Q 040875 646 TDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSG 725 (930)
Q Consensus 646 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsG 725 (930)
..+.++..+++|++++++.+++.++.......+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 456 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCc
Confidence 99999999999999999876554333322233334568999999999999887889999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchh
Q 040875 726 KSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHD 805 (930)
Q Consensus 726 KSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~ 805 (930)
||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||+||+|||||||+||.+ +.+++++++||+.|++++
T Consensus 457 KSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEK 535 (1321)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchh
Confidence 9999999999999999999999999999999999999999999999999999999999986 689999999999999999
Q ss_pred HHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 040875 806 FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885 (930)
Q Consensus 806 ~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~t 885 (930)
||+.||+|+||.|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|++..+|||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 886 IQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 886 i~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+++||+|+||++|+|+|+|+|+||++ ++|.|++|++.|..
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~--~~g~y~~l~~~q~~ 655 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMA--QQGLYYDLVTAQTF 655 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHT--TTCHHHHHHHHHHH
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHH--hhhHHHHHHHhhhc
Confidence 99999999999999999999999998 78999999998753
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-88 Score=803.56 Aligned_cols=564 Identities=25% Similarity=0.407 Sum_probs=501.1
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 354 LNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYYFAYTGEY 433 (930)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (930)
+.+++++.+..+.++.++..++....+++++.+++....... ......+...++++.++..++.+++.++..+.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (587)
T 3qf4_A 17 YLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFASYASQN 93 (587)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777888888888888999988886543211 11223345555666667777888888889999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 434 LTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWRLALVIIA 513 (930)
Q Consensus 434 ~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~ 513 (930)
+..++|.++|++++++|+.||+ ++++|++++|+++|++.+++.+...+..++...+.+++.+++++.++|.+++++++
T Consensus 94 ~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 94 FGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 68999999999999999999998888888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040875 514 VQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSWIAGICLA 593 (930)
Q Consensus 514 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (930)
.+|++++...+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777777777777888888899999999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 040875 594 FSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDP 673 (930)
Q Consensus 594 ~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 673 (930)
...++..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.+++.++...
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 88888888888999999999999999999999999999888899999999999999999999999999986543322111
Q ss_pred CCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC
Q 040875 674 KGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753 (930)
Q Consensus 674 ~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~ 753 (930)
. ...++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++
T Consensus 332 ~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 332 A-LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp C-BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred c-cccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 1 1112345789999999999753 4579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 754 YHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 754 ~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++.+++|++++||||||++|++||+|||.++.+ ..++++++++++.++++++++.+|+|+||.++++|.+||||||||+
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred CCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 999999999999999999999999999999875 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccC
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||++++..||||++|++|+|+|+|+|+||++
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~-- 566 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE-- 566 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH--
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh--
Confidence 999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHhhh
Q 040875 914 PAGAYYSLVSLQTA 927 (930)
Q Consensus 914 ~~g~y~~l~~~~~~ 927 (930)
++|.|+++++.|.+
T Consensus 567 ~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 567 HCKPYREIYESQFG 580 (587)
T ss_dssp HCHHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHhc
Confidence 67999999998754
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.9e-87 Score=795.03 Aligned_cols=572 Identities=30% Similarity=0.443 Sum_probs=506.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh----hHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 040875 348 FRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDH----DEIKEKTRFYSLCFFGLSIFSLLTNVCQ 423 (930)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (930)
+++++++.+++++.+..+.+.+++...+....+++++.+++....... .........+...++++.++..++.+.+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888877777888888888888886653221 1111111233444555666677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040875 424 QYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLII 503 (930)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (930)
.+...+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 6899999999999999999988877777777788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Q 040875 504 SWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVR 583 (930)
Q Consensus 504 ~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 583 (930)
+|++++++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988898888877777777777888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040875 584 QSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLD 663 (930)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 663 (930)
..++..........+..+..++++++|++++..|.+++|.+++++.+......++..+...+..+.++..+.+|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888888888888888999999999999999999999999999888899999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 040875 664 RDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV 743 (930)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~ 743 (930)
.+++.++.. .....+...+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 754432211 111112345789999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCC
Q 040875 744 VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823 (930)
Q Consensus 744 I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~ 823 (930)
|.+||+|+++++.+++|++++||||||++|++||+|||.++.+ ..++++++++++.++++++++++|+|+||.+||+|.
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~ 476 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCC
Confidence 9999999999999999999999999999999999999999875 578899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 903 (930)
+||||||||+||||||+++|+|||||||||+||+++++.+++.+++..+++|+|+||||+++++.||||++|++|+|+|+
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVET 556 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCCcHHHHHHHHhh
Q 040875 904 GSHESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 904 G~~~eLl~~~~~g~y~~l~~~~~ 926 (930)
|+|+||++ ++|.|+++++.|.
T Consensus 557 g~~~el~~--~~~~~~~~~~~q~ 577 (578)
T 4a82_A 557 GTHRELIA--KQGAYEHLYSIQN 577 (578)
T ss_dssp ECHHHHHH--TTSHHHHHHTTTT
T ss_pred CCHHHHHh--CCcHHHHHHHhhc
Confidence 99999998 6899999998774
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-87 Score=798.49 Aligned_cols=571 Identities=28% Similarity=0.449 Sum_probs=513.4
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040875 345 APAFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQ 424 (930)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (930)
...+++++.+.+++++.+..+.++.++.+++....+++++.+++....... ......+..+++++.++..++.+.+.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888888888889999998886543211 12233456667777778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 425 YYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIIS 504 (930)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (930)
+.....+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..+..+++.+++++..+
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 68999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHH
Q 040875 505 WRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQ 584 (930)
Q Consensus 505 ~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 584 (930)
|+++++++++.|+.++......+..++..++..+..++....+.|.++|+++||+|++|+.+.++|++..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888988888877777777777788888889999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040875 585 SWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDR 664 (930)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 664 (930)
.+..........++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+.++..+.+|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888999999999999999999999988888888899999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE
Q 040875 665 DTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV 744 (930)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I 744 (930)
+++.++.. ....++..+.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|
T Consensus 337 ~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 54332111 1112234578999999999964 3469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC
Q 040875 745 KIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ 824 (930)
Q Consensus 745 ~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~ 824 (930)
.+||+|+++++.+++|++++||||||++|++||+|||.++.+ ..++++++++++.++++++++.+|+|+||.+||+|.+
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 999999999999999999999999999999999999999875 5788899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEec
Q 040875 825 LSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 825 LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 904 (930)
||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||||++|++|+|+|+|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhccCCCcHHHHHHHHhhh
Q 040875 905 SHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 905 ~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+|+||++ ++|.|++++..|.+
T Consensus 572 ~~~~l~~--~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 572 KHDELIQ--KRGFYYELFTSQYG 592 (598)
T ss_dssp CHHHHHH--TTCHHHHHHHHHHG
T ss_pred CHHHHHh--CCCHHHHHHHHHhh
Confidence 9999998 68999999998765
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.3e-85 Score=781.84 Aligned_cols=577 Identities=34% Similarity=0.532 Sum_probs=489.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+++++...++.++.+..+.+..++...+.+..+++++.+++................+...++++.++..++.+.+.+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777788888887754321110000112233444555666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999999999998 6889999999999999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777888888888899999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
..........++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+.++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCcc-EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 040875 667 KINPEDPKGYRPEKITGH-IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVK 745 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~-I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~ 745 (930)
+.++... ...+++..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 324 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNEG-VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSCS-BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCCC-CCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 3221111 1111223467 9999999999754345799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCC--CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCC
Q 040875 746 IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASD--KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823 (930)
Q Consensus 746 idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~--~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~ 823 (930)
+||+|+++++.+++|++++||||+|.+|++||+|||.++.+. +.++++++++++.++++++++++|+|+||++||+|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999998652 268899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 903 (930)
+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||||++|++|+|+|.
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 562 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhccCCCcHHHHHHHHhhh
Q 040875 904 GSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 904 G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
|+|+||+++ +++.|+++++.|..
T Consensus 563 g~~~~l~~~-~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 563 GKHEELLSK-PNGIYRKLMNKQSF 585 (595)
T ss_dssp ECSCC-------C-----------
T ss_pred CCHHHHHhC-CChHHHHHHHHhhc
Confidence 999999973 58999999988764
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.3e-84 Score=774.68 Aligned_cols=570 Identities=29% Similarity=0.480 Sum_probs=503.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+++++.+.++.++.+..+.+..++.+++....+++++.+++....... . .....+...++++.++..++.+.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777777777777788888888876542111 1 111112233556667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|.+++++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999997 6889999999999999999998888888999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777777777778888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98988888898888889999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++ .. ...++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 327 ~~~~-~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDN-GK--YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCC-CC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 3221 11 1112234689999999999743 246999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++++||||||.+|++||+|||.++...+.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 99999999999999999999999999999999999998612568899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
||||||+||||||+++|+|||||||||+||+++++.+++.|++..+|+|+|+||||++++..||||++|++|+++|.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHhhh
Q 040875 907 ESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+||++ +++.|+++++.|..
T Consensus 563 ~~l~~--~~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 563 ADLLA--QDGAYAQLHRIQFG 581 (582)
T ss_pred HHHHh--CCcHHHHHHHHhhc
Confidence 99997 67999999998853
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.3e-84 Score=774.69 Aligned_cols=569 Identities=32% Similarity=0.498 Sum_probs=502.2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 347 AFRRLLALNIREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDHDEIKEKTRFYSLCFFGLSIFSLLTNVCQQYY 426 (930)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (930)
.+++++...++.++.+..+.+..++...+....+++++.+++...... + . .....+...++++.++..++.+.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-D-R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-T-H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777777777777777777888888887543211 1 1 111112233555667777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 427 FAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTLSSITIAFTMSLIISWR 506 (930)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (930)
....+.++..++|.+++++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 6889999999999999999999888889999888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 040875 507 LALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKMLEKAQEAPRREGVRQSW 586 (930)
Q Consensus 507 l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 586 (930)
+++++++..|+.++......+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777788888888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040875 587 IAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDT 666 (930)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 666 (930)
.......+..++..+...+++++|++++..|.+++|.+++++.+......++..+...+..+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 667 KINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 667 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
+.++ .+ ...++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 327 ~~~~-~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE-GK--RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC-CC--BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC-CC--CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 3221 11 1111234679999999999742 246999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCC
Q 040875 747 DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLS 826 (930)
Q Consensus 747 dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LS 826 (930)
||+|+++++.+++|++++||||||.+|++||+|||.++...+.++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 99999999999999999999999999999999999998612568899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
||||||++|||||+++|+|||||||||+||+++++.+++.|++..+|+|+|+||||+++++.||||++|++|+++|.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhccCCCcHHHHHHHHhh
Q 040875 907 ESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 907 ~eLl~~~~~g~y~~l~~~~~ 926 (930)
+||++ +++.|+++++.|.
T Consensus 563 ~~l~~--~~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLA--QHGVYAQLHKMQF 580 (582)
T ss_dssp HHHHH--HTSSHHHHHHHTC
T ss_pred HHHHH--cCCHHHHHHHHhc
Confidence 99997 6789999999874
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.1e-86 Score=849.71 Aligned_cols=573 Identities=35% Similarity=0.618 Sum_probs=514.1
Q ss_pred HHHHHHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-----------------hHHhhhhhHHHHHHH
Q 040875 349 RRLLALN-IREWKQASLGCLSAILFGAVQPVYAFAMGSMISVYFLKDH-----------------DEIKEKTRFYSLCFF 410 (930)
Q Consensus 349 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~~~~~~~~~ 410 (930)
.+++++. +.++..+.++.+++++.++..|..+++++.+++.+..... .........|.++|+
T Consensus 36 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1284)
T 3g5u_A 36 LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYT 115 (1284)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence 3444444 3456677778888888899999998888887765431100 001123345777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 040875 411 GLSIFSLLTNVCQQYYFAYTGEYLTKRIRKNMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVALLVQTL 490 (930)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ff~~~~~~~G~i~~rls~D~~~i~~~~~~~~~~~~~~~ 490 (930)
+++++..++.+++.+++.+.+.+...++|.++|++++++|++||| ++++|++++|+++|++.+++.++..+..++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 116 GIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccHHHHHHHH
Q 040875 491 SSITIAFTMSLIISWRLALVIIAVQPLVIVCLYGKEVLLKRMSKKVIKAQDESSKLAAEAVSNLRTITAFSSQERILKML 570 (930)
Q Consensus 491 ~~~~~~~~~~~~~~~~l~lv~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~ 570 (930)
+.+++.+++++..+|++++++++++|++++...+..+..++..++..+..++...++.|++.|++|||+|+.|+++.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040875 571 EKAQEAPRREGVRQSWIAGICLAFSRSLVSCVVALAFWYGGRLVARGYINAKSLFEIFLVLVSTGKVIADAGTMTTDIAK 650 (930)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (930)
++..++..+...+.............++..+..++++|+|+.++..|.+++|.+++++.++.....++..+...+..+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888899999999999999999999999999988888877778889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHH
Q 040875 651 GSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTII 730 (930)
Q Consensus 651 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~ 730 (930)
+..+++|++++++.+++.++..+....+++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999987654332222222233346899999999999876566799999999999999999999999999999
Q ss_pred HHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcC
Q 040875 731 GLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGL 810 (930)
Q Consensus 731 ~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~L 810 (930)
++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||++||+|||.+|.+ +.++++++++++.+++++++.++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKL 512 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999875 67899999999999999999999
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccC
Q 040875 811 SEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCD 890 (930)
Q Consensus 811 p~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~D 890 (930)
|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+++.+++..+|+|+|+||||++++.+||
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d 592 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCS
T ss_pred cccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhh
Q 040875 891 MIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 891 rI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 926 (930)
+|+||++|+|+|.|+|+||++ ++|.|++++..|.
T Consensus 593 ~i~vl~~G~i~~~g~~~~l~~--~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 593 VIAGFDGGVIVEQGNHDELMR--EKGIYFKLVMTQT 626 (1284)
T ss_dssp EEEECSSSCCCCEECHHHHHH--TTSHHHHHHHHTC
T ss_pred EEEEEECCEEEEECCHHHHHh--CCCHHHHHHHHhh
Confidence 999999999999999999998 6899999997664
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.5e-67 Score=568.39 Aligned_cols=278 Identities=42% Similarity=0.655 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 040875 644 MTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSG 723 (930)
Q Consensus 644 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sG 723 (930)
.+.+++.+..+++|++++++.+++...... ....+...+.|+++||+|+|++ ..++|+|+||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 445666777888999998875443221111 1111223478999999999964 3469999999999999999999999
Q ss_pred CcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcc
Q 040875 724 SGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANA 803 (930)
Q Consensus 724 sGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l 803 (930)
||||||+++|+|+|+|++|+|.+||+|+++++..++|++|+||||+|.+|++||+|||.++.+ ..++++++++++.+++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGI 169 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999875 5788999999999999
Q ss_pred hhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 040875 804 HDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRL 883 (930)
Q Consensus 804 ~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl 883 (930)
++++..+|+||+|.++++|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhhh
Q 040875 884 STIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQTA 927 (930)
Q Consensus 884 ~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~~ 927 (930)
+++..||||+||++|+|+|.|+|+||++ .+|.|++|++.|..
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~--~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLS--RGGVYADMWQLQQG 291 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHH--HTSHHHHHHHHHHC
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHh--cChHHHHHHHHHHh
Confidence 9999999999999999999999999998 68999999998865
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.3e-56 Score=473.60 Aligned_cols=240 Identities=43% Similarity=0.718 Sum_probs=225.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
.+|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+..++|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999521 3469999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++||||+|.+|.+|++||+.++.+ ..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998753 4577889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~ 922 (930)
|++||||||||+||+++++.+.+.|++..+|+|+|+|||+++.+..||+|++|++|++++.|++++++++ +.+.|.+++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~l~ 242 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE-PESLYSYLY 242 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS-TTCHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CchHHHHHH
Confidence 9999999999999999999999999988779999999999999988999999999999999999999973 488999998
Q ss_pred HHh
Q 040875 923 SLQ 925 (930)
Q Consensus 923 ~~~ 925 (930)
..|
T Consensus 243 ~~~ 245 (247)
T 2ff7_A 243 QLQ 245 (247)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8e-56 Score=471.23 Aligned_cols=242 Identities=42% Similarity=0.720 Sum_probs=224.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++||+++|++.+..++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+.+..++|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753234699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++||||+|.+|.+|++||+.++.. ..++++++++++.+++.+++..+|+|+|+.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999753 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLV 922 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~ 922 (930)
|+|||||||||+||+++++.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++ .++.|.+++
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~~~~~~ 251 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK--LNGEYAEMW 251 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH--HTSHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh--cChHHHHHH
Confidence 999999999999999999999999999877999999999999998899999999999999999999997 568899999
Q ss_pred HHhhhh
Q 040875 923 SLQTAE 928 (930)
Q Consensus 923 ~~~~~~ 928 (930)
..|..+
T Consensus 252 ~~~~~~ 257 (260)
T 2ghi_A 252 NMQSGG 257 (260)
T ss_dssp HHHHC-
T ss_pred Hhhhhh
Confidence 877543
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.4e-55 Score=470.11 Aligned_cols=243 Identities=42% Similarity=0.688 Sum_probs=221.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++||+++|++.++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999964223469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCH-HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDE-SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d-~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
|+||||+|.+|.+|++|||.++.. ..++ ++++++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999754 3333 67888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHH
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYY 919 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~ 919 (930)
+|+|||||||||+||+++.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++ ..+.|.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~--~~~~~~ 251 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME--RGGCYR 251 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH--HTSHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh--CcHHHH
Confidence 9999999999999999999999999998754 899999999999998899999999999999999999997 468999
Q ss_pred HHHHHhhhh
Q 040875 920 SLVSLQTAE 928 (930)
Q Consensus 920 ~l~~~~~~~ 928 (930)
++++.+..+
T Consensus 252 ~~~~~~~~~ 260 (271)
T 2ixe_A 252 SMVEALAAP 260 (271)
T ss_dssp HHHHC----
T ss_pred HHHHHhhcc
Confidence 998876543
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-56 Score=467.60 Aligned_cols=238 Identities=42% Similarity=0.699 Sum_probs=221.8
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+..++|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
||||+|.+|.+|++||+.++.....++++++++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987222457788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHH
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSL 924 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~ 924 (930)
+||||||||+||+++.+.+.+.|++..+++|+|+|||+++.+..||||++|++|++++.|+|+++++ ..+.|.+++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA--THPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH--HCHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh--ccHHHHHHHHh
Confidence 9999999999999999999999998778999999999999988899999999999999999999997 46778888876
Q ss_pred hh
Q 040875 925 QT 926 (930)
Q Consensus 925 ~~ 926 (930)
+.
T Consensus 238 ~~ 239 (243)
T 1mv5_A 238 QL 239 (243)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-53 Score=473.50 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=219.5
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhc
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~ 761 (930)
.+.|+++||+++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++.+++|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3679999999999643 4569999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 762 HVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 762 ~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+++||||+|.+|.+|++||+.+.. ...+++++++++.+++.++.+..|.++++.++++|.+||||||||+||||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999997543 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
+|+|||||||||+||+++...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+|++++ +...|..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~-p~~~~va 250 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY-PADRFVA 250 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC-CSBHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCchHHH
Confidence 99999999999999999999999999988789999999999999888999999999999999999999974 6666654
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1e-51 Score=433.79 Aligned_cols=226 Identities=31% Similarity=0.489 Sum_probs=205.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34699999999999999999999999999999999999999999999999 39
Q ss_pred EEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 764 ALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 764 ~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
+||||+|.+|..|++||+.++.. .++++.+++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998743 2345567788888998889889999999999999999999999999999999999
Q ss_pred CEEEeeccCCCCCHHHHHHHHHHHH---HHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHH
Q 040875 844 AVLLLDEATSALDSQSEKLVQEALE---RLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 844 ~ILiLDEaTSaLD~~te~~i~~~i~---~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
+|||||||||+||+++.+.+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++ .++.|.+
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~~~ 224 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA--RDGAFAE 224 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH--HTSHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh--ccHHHHH
Confidence 9999999999999999999999984 3446899999999999988899999999999999999999997 5788999
Q ss_pred HHHHhhh
Q 040875 921 LVSLQTA 927 (930)
Q Consensus 921 l~~~~~~ 927 (930)
++..|..
T Consensus 225 ~~~~~~~ 231 (237)
T 2cbz_A 225 FLRTYAS 231 (237)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9887653
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.6e-51 Score=428.63 Aligned_cols=222 Identities=27% Similarity=0.430 Sum_probs=200.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 579999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++||||+|.+|.+|++||+.++.. ..+.+..++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998742 345566778888999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEAL-ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i-~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 921 (930)
|++||||||||+||+++.+.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++ .++.|.++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~--~~~~~~~~ 226 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN--LQPDFSSK 226 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT--C--CHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh--cChHHHHH
Confidence 9999999999999999999999874 55556899999999999988899999999999999999999986 44566655
Q ss_pred H
Q 040875 922 V 922 (930)
Q Consensus 922 ~ 922 (930)
+
T Consensus 227 ~ 227 (229)
T 2pze_A 227 L 227 (229)
T ss_dssp H
T ss_pred h
Confidence 4
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.1e-50 Score=441.31 Aligned_cols=226 Identities=28% Similarity=0.470 Sum_probs=196.6
Q ss_pred ccEEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---
Q 040875 683 GHIELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS--- 758 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~--- 758 (930)
.-|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+.+++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246899999999999999999999999999999999999999999999999999998765
Q ss_pred hhcceEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 759 LRRHVALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
+|++|+||||+|.+|.. ||+||+.++.. ...+ ++++.++++.++|.++.. ..+.+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 47899999999998865 99999987521 1122 345777888888866432 4567999999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
++|||||+.+|+|||||||||+||+.+.+.|.+.|++.. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999976 999999999999999999999
Q ss_pred hccCCCcHHHH
Q 040875 910 LAKGPAGAYYS 920 (930)
Q Consensus 910 l~~~~~g~y~~ 920 (930)
+.+ +...|.+
T Consensus 252 ~~~-p~~~~~~ 261 (366)
T 3tui_C 252 FSH-PKTPLAQ 261 (366)
T ss_dssp HSS-CCSHHHH
T ss_pred HhC-CCcHHHH
Confidence 974 5555543
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.6e-50 Score=422.52 Aligned_cols=216 Identities=31% Similarity=0.440 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCC-CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh----
Q 040875 685 IELQYVHFAYPARP-DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL---- 759 (930)
Q Consensus 685 I~~~nvsf~Y~~~~-~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l---- 759 (930)
|+++||+++|++++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hcceEEEccCCCCCcc-cHHHHhhcCCC----CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 760 RRHVALVSQEPALFAV-TVRENITYGAS----DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~g-TIreNl~~g~~----~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
|++++||||+|.+|.. |++||+.++.. ...+ .+++.++++.+++.+.. ....+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 99999976410 0122 23456667777664421 1245778999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCEEEEEeCCEEEEecChhH
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 908 (930)
||++|||||+.+|++||||||||+||+.+...+.+.|++..+ |+|+|+|||+++....||||++|++|+|++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998753 899999999999777799999999999999999887
Q ss_pred Hh
Q 040875 909 LL 910 (930)
Q Consensus 909 Ll 910 (930)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 64
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.9e-50 Score=428.11 Aligned_cols=215 Identities=28% Similarity=0.503 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~ 761 (930)
.|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 59999999999642 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ceEEEccCC--CCCcccHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 762 HVALVSQEP--ALFAVTVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 762 ~i~~V~Q~p--~LF~gTIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
+++||||+| .+|..|++||+.++... ..+. +++.++++.+++.++.. ..+.+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHH
Confidence 999999998 58899999999876321 1232 45677788887765432 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. + |+|+|+|||+++.+.. ||||++|++|++++.|+|+|++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 3 8999999999999975 99999999999999999999986
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-49 Score=414.13 Aligned_cols=215 Identities=28% Similarity=0.415 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh-hcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL-RRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 762 (930)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+..++ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999998887665 556
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCCCCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGASDKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
++||||+|.+|.+ |++||+.++.....++ +.+.++++.. + |++......+.+||||||||++|||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHHHHHHHH
Confidence 9999999999987 9999999863111122 2333444443 2 2333344567899999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
||+++|++||||||||+||+++.+.+.+.|++.. +|+|+|+|||+++.+. .||||++|++|++++.|+++++++
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999998875 6899999999998875 599999999999999999999985
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-48 Score=414.95 Aligned_cols=220 Identities=32% Similarity=0.474 Sum_probs=190.9
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~ 761 (930)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999985 345667888
Q ss_pred ceEEEccCCCCCcc-cHHHHhhcCC--CCCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 762 HVALVSQEPALFAV-TVRENITYGA--SDKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 762 ~i~~V~Q~p~LF~g-TIreNl~~g~--~~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
+++||||+|.+|.. |++||+.++. ....+ ++++.++++.+++.++.. ..+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 99999999999876 9999998752 11122 345677888888765432 345689999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999999873
Q ss_pred CCCcHH
Q 040875 913 GPAGAY 918 (930)
Q Consensus 913 ~~~g~y 918 (930)
+...+
T Consensus 250 -~~~~~ 254 (263)
T 2olj_A 250 -PQHER 254 (263)
T ss_dssp -CCSHH
T ss_pred -cccHH
Confidence 44333
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-48 Score=416.39 Aligned_cols=214 Identities=28% Similarity=0.444 Sum_probs=191.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+++++
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 699999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCC-CcccHHHHhhcCCCC---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 764 ALVSQEPAL-FAVTVRENITYGASD---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g~~~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
+|+||+|.+ |..|++||+.++... ...++++.++++.+++.++.. ..+.+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 999999976 678999999886421 223567888888888765432 23458999999999999999
Q ss_pred cc------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 840 LK------NPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 840 l~------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
+. +|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 5799999999999875 9999999999999999999998
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 25
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-48 Score=427.24 Aligned_cols=223 Identities=29% Similarity=0.479 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC--CCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS--YHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~ 761 (930)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999933 23345678
Q ss_pred ceEEEccCCCCCc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 762 HVALVSQEPALFA-VTVRENITYGASD-KI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 762 ~i~~V~Q~p~LF~-gTIreNl~~g~~~-~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+++||||++.||. -|++||+.|+... .. .++++.++++.+++.++.+ ..+.+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 8999999999996 5999999997531 11 2356788888888876543 3456899999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
||||+.+|++||||||||+||+.+...+++.|++.. .|+|+|+|||+++.+.. ||||+||++|+|++.|+|+|++++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 48999999999999865 999999999999999999999974
Q ss_pred CCCcHHHHH
Q 040875 913 GPAGAYYSL 921 (930)
Q Consensus 913 ~~~g~y~~l 921 (930)
+...|...
T Consensus 230 -p~~~~~a~ 237 (359)
T 3fvq_A 230 -PADLDAAL 237 (359)
T ss_dssp -CSCHHHHH
T ss_pred -cccHHHHH
Confidence 66665543
No 26
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-48 Score=410.37 Aligned_cols=214 Identities=28% Similarity=0.438 Sum_probs=189.7
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++||||+|.+|.+ |++||+.++.. ...+ ++++.++++.+++.++.. ..+.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999998877 99999987421 0112 245778888888866543 23568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|||+.+|++||||||||+||+.+.+.+.+.|++.. +|+|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999998875 58999999999999976 99999999999999999999975
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-48 Score=411.87 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=190.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC----------
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS---------- 753 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~---------- 753 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHhhcceEEEccCCCCCcc-cHHHHhhcCC--CCCCC----HHHHHHHHHHhcchhH-HhcCccccccccCCCC
Q 040875 754 YHL---RSLRRHVALVSQEPALFAV-TVRENITYGA--SDKID----ESEIIEAAKAANAHDF-IAGLSEGYDTWCGDRG 822 (930)
Q Consensus 754 ~~~---~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~--~~~~~----d~ei~~al~~~~l~~~-i~~Lp~gldt~vge~G 822 (930)
++. ..+|++++||||+|.+|.. |++||+.++. ....+ ++++.++++.+++.++ .. ..+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCc
Confidence 443 3568899999999998876 9999998742 11122 3457788888888776 43 345
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998874 48999999999999874 999999999999
Q ss_pred EEecChhHHhccCCCcHH
Q 040875 901 VEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 901 ve~G~~~eLl~~~~~g~y 918 (930)
++.|++++++++ +...+
T Consensus 232 ~~~g~~~~~~~~-~~~~~ 248 (262)
T 1b0u_A 232 EEEGDPEQVFGN-PQSPR 248 (262)
T ss_dssp EEEECHHHHHHS-CCSHH
T ss_pred EEeCCHHHHHhC-cchHH
Confidence 999999999863 43333
No 28
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.4e-48 Score=428.02 Aligned_cols=220 Identities=30% Similarity=0.461 Sum_probs=193.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++||+++|+ +..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999988765 4689
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||+|.||.. ||+|||.|+.. ...+ ++++.++++.+++.++.+ ..+.+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHH
Confidence 999999999965 99999988631 1123 345677888888765433 456689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||||+||++|+|++.|+|+|++++ +
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~-p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY-P 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC-C
Confidence 99999999999999999999999999999988753 8999999999998865 999999999999999999999974 6
Q ss_pred CcHHHH
Q 040875 915 AGAYYS 920 (930)
Q Consensus 915 ~g~y~~ 920 (930)
...|..
T Consensus 226 ~~~~v~ 231 (381)
T 3rlf_A 226 ADRFVA 231 (381)
T ss_dssp SBHHHH
T ss_pred ccHHHH
Confidence 666654
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-47 Score=409.57 Aligned_cols=214 Identities=29% Similarity=0.498 Sum_probs=189.1
Q ss_pred EEEEEEEEEcCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 685 IELQYVHFAYPARPD--VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~--~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred eEEEccCC--CCCcccHHHHhhcCCC----CCCCHHHHHHHHHHhcch--hHHhcCccccccccCCCCCCCChHHHHHHH
Q 040875 763 VALVSQEP--ALFAVTVRENITYGAS----DKIDESEIIEAAKAANAH--DFIAGLSEGYDTWCGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 763 i~~V~Q~p--~LF~gTIreNl~~g~~----~~~~d~ei~~al~~~~l~--~~i~~Lp~gldt~vge~G~~LSgGQrQrla 834 (930)
++||||+| .+|..|++||+.++.. ....++++.++++.+++. ++... .+.+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHH
Confidence 99999997 5788999999998632 122356788999999987 66543 34589999999999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhcc
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999876 999999999999999999999863
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.5e-48 Score=410.79 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH-Hhhcc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR-SLRRH 762 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~-~lR~~ 762 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. .+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5999999999953 4699999999999999999999999999999999999999999999999999887653 46788
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCC---C-----------CC----HHHHHHHHHHhcchhHHhcCccccccccCCCCC
Q 040875 763 VALVSQEPALFA-VTVRENITYGASD---K-----------ID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL 823 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~---~-----------~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~ 823 (930)
++||||+|.+|. .|++||+.++... . .+ .+++.++++.+++.+.. ...+.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 999999998886 6999999886321 1 11 23456667776665432 34567
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEE
Q 040875 824 QLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVV 901 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~iv 901 (930)
+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|++.. +|+|||+|||+++.+. .||||++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998875 4899999999999986 59999999999999
Q ss_pred EecChhH
Q 040875 902 EEGSHES 908 (930)
Q Consensus 902 e~G~~~e 908 (930)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.2e-48 Score=401.21 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=181.0
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH---hh
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS---LR 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 760 (930)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+..+ +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998887543 34
Q ss_pred -cceEEEccCCCCCc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 761 -RHVALVSQEPALFA-VTVRENITYGAS-DKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 761 -~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
++++||||+|.+|. -|++||+.++.. ... .++++.++++.+++.++. ...+.+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 78999999999886 599999987421 011 234567777777775432 234568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEEeCCEEEEecC
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 905 (930)
+|||||+.+|++||||||||+||+++.+.+.+.|++.. +|+|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999998874 5899999999999887799999999999999986
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5e-48 Score=414.36 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=187.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC--CCCHHHhh
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR--SYHLRSLR 760 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR 760 (930)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+..++|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999953 46999999999999999999999999999999999999999999999999998 77888899
Q ss_pred cceEEEccCCCC-Ccc--cHHHHhhcCCCC------CCC---HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 761 RHVALVSQEPAL-FAV--TVRENITYGASD------KID---ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 761 ~~i~~V~Q~p~L-F~g--TIreNl~~g~~~------~~~---d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
++++||||+|.+ |.. |++||+.++... ..+ ++++.++++.+++.++.. ..+.+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----------QYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHH
Confidence 999999999964 555 999999886311 112 245677788887755432 345689999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEccCchhhh-ccCEEEEEeCCEEEEec
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTS--VVVAHRLSTIQ-NCDMIAVLEQGRVVEEG 904 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~Tv--I~IaHrl~ti~-~~DrI~vl~~G~ive~G 904 (930)
||||++|||||+.+|++||||||||+||+++.+.+.+.|++..+ |+|+ |+|||+++.+. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999988753 8999 99999999985 59999999999999999
Q ss_pred ChhHHhc
Q 040875 905 SHESLLA 911 (930)
Q Consensus 905 ~~~eLl~ 911 (930)
+++++++
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9999975
No 33
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.7e-48 Score=413.95 Aligned_cols=216 Identities=27% Similarity=0.428 Sum_probs=181.2
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++||++.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 569999999864 2489999999999999999999999999999999999999999999998 4
Q ss_pred eEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 763 VALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 763 i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
++||||+|.+|.+|++||+. +. ...+.++.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 53 2345566778888999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccCCCCCHHHHHHHHHHH-HHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHH
Q 040875 843 PAVLLLDEATSALDSQSEKLVQEAL-ERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSL 921 (930)
Q Consensus 843 ~~ILiLDEaTSaLD~~te~~i~~~i-~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l 921 (930)
|++||||||||+||+.+.+.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++ ....|.+.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~--~~~~~~~~ 255 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN--LRPDFSSK 255 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH--HCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh--hcHHHHHH
Confidence 9999999999999999999998864 44456899999999999998899999999999999999999986 33445443
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-47 Score=402.56 Aligned_cols=209 Identities=26% Similarity=0.352 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
-|+++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.+||.++.+.+..++|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999986 3899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC
Q 040875 764 ALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN 842 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 842 (930)
+||||+|.+|.+ |++||+.++.....+++++.++++.+++.++.. ..+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 999999987421224778889999998876533 34668999999999999999999
Q ss_pred CC-------EEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 040875 843 PA-------VLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 843 ~~-------ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
|+ +||||||||+||+.+.+.+.+.|++.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999874 5899999999999985 599999999999999999999975
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-47 Score=402.89 Aligned_cols=209 Identities=29% Similarity=0.454 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|+ + +|+|+||++++ |.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 4578899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCCCC---CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 765 LVSQEPALFAV-TVRENITYGASDK---IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~~~---~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
||||+|.+|.. |++||+.++.... .+++++.++++.+++.++.. ..+.+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 9999999864211 11345677777777755432 345689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhcc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAK 912 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~ 912 (930)
++|++||||||||+||+++.+.+.+.|++..+ |+|+|++||+++.+. .||+|++|++|++++.|++++++++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999988743 899999999999875 4999999999999999999999873
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.8e-47 Score=418.05 Aligned_cols=219 Identities=31% Similarity=0.489 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. ++++
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34689999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||++.+|.. |++||+.|+... ..+ ++++.++++.+++.++.+. .+.+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999965 999999987421 112 3467888999888765443 35689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++|+||||||+||+++.+.+.+.|++..+ |.|+|+|||+++.+. .||||++|++|+|++.|+|+|++++ +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~-p 225 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS-P 225 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 899999999999885 5999999999999999999999974 5
Q ss_pred CcHHH
Q 040875 915 AGAYY 919 (930)
Q Consensus 915 ~g~y~ 919 (930)
...|.
T Consensus 226 ~~~~~ 230 (359)
T 2yyz_A 226 KNMFV 230 (359)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-47 Score=418.37 Aligned_cols=221 Identities=33% Similarity=0.491 Sum_probs=192.1
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999942 2358999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
++||||++.+|.. |++||+.|+.. ...+ ++++.++++.+++.++.+ ..+.+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 9999999999975 99999988531 1112 356778888888876543 34568999999999999
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHhccC
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLLAKG 913 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~ 913 (930)
|||+.+|++||||||||+||+.+.+.+.+.|++..+ |.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~- 236 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK- 236 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-
Confidence 999999999999999999999999999999988753 8999999999999865 999999999999999999999974
Q ss_pred CCcHHH
Q 040875 914 PAGAYY 919 (930)
Q Consensus 914 ~~g~y~ 919 (930)
+...|.
T Consensus 237 p~~~~~ 242 (355)
T 1z47_A 237 PGTLFV 242 (355)
T ss_dssp CSSHHH
T ss_pred ccchHH
Confidence 555543
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-47 Score=420.39 Aligned_cols=219 Identities=34% Similarity=0.499 Sum_probs=190.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. ++++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 4599999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||++.+|.. |++||+.|+.. ...+ ++++.++++.+++.++.+ ..+.+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-----------RYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-----------CChhhCCHHHHHHHHHHH
Confidence 999999999975 99999988631 1122 345778888888765543 345689999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++||||||||+||+++...+.+.|++..+ |.|+|+|||+++.+. .||||++|++|+|++.|+|+|++++ +
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~-p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK-P 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS-C
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC-c
Confidence 99999999999999999999999999999988753 899999999999885 5999999999999999999999974 5
Q ss_pred CcHHH
Q 040875 915 AGAYY 919 (930)
Q Consensus 915 ~g~y~ 919 (930)
...|.
T Consensus 226 ~~~~~ 230 (362)
T 2it1_A 226 KYKFV 230 (362)
T ss_dssp SBHHH
T ss_pred cchHH
Confidence 55553
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9e-47 Score=417.82 Aligned_cols=219 Identities=27% Similarity=0.436 Sum_probs=186.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 34699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCCCCcc-cHHHHhhcCCCC-CCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 764 ALVSQEPALFAV-TVRENITYGASD-KIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 764 ~~V~Q~p~LF~g-TIreNl~~g~~~-~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+||||++.+|.. |++||+.|+... ..+. +++.++++.+++.++.+ ..+.+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999964 999999997531 1232 45778888888866543 346699999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCC
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGP 914 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~ 914 (930)
||+++|++||||||||+||+++.+.+.+.|++..+ |.|+|+|||+++.+. .||||++|++|+|++.|+|+|++++ +
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~-p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-P 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC-C
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC-c
Confidence 99999999999999999999999999999988753 899999999999885 5999999999999999999999974 5
Q ss_pred CcHHH
Q 040875 915 AGAYY 919 (930)
Q Consensus 915 ~g~y~ 919 (930)
...|.
T Consensus 234 ~~~~~ 238 (372)
T 1v43_A 234 NSVFV 238 (372)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.5e-47 Score=417.04 Aligned_cols=216 Identities=29% Similarity=0.515 Sum_probs=189.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
|+++|++++|+ +. +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 8999999999999999999999999999999999999999999999999987554 477899
Q ss_pred EEccCCCCCcc-cHHHHhhcCCC--CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 765 LVSQEPALFAV-TVRENITYGAS--DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 765 ~V~Q~p~LF~g-TIreNl~~g~~--~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
||||++.+|.. |++||+.|+.. ....++++.++++.+++.++.+ ..+.+||||||||+||||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999988531 0112377888999998866543 3456899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHhccCCCcHH
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y 918 (930)
+|++|+||||||+||+++.+.+.+.|++.. .|.|+|+|||+++.+. .||||++|++|+|++.|+|+|++++ +...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~-p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK-PVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS-CCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cccHH
Confidence 999999999999999999999999998874 3899999999999875 5999999999999999999999974 55544
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.2e-47 Score=418.43 Aligned_cols=221 Identities=30% Similarity=0.438 Sum_probs=191.5
Q ss_pred cEEEEEEEEEcCCCCCcc--ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC---HHH
Q 040875 684 HIELQYVHFAYPARPDVI--IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH---LRS 758 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~--vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~ 758 (930)
.|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 45 899999999999999999999999999999999999999999999999987621 334
Q ss_pred hhcceEEEccCCCCCcc-cHHHHhhcCCCC-CCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 759 LRRHVALVSQEPALFAV-TVRENITYGASD-KID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~g-TIreNl~~g~~~-~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
.|++++||||++.+|.. |++||+.|+... ..+ ++++.++++.+++.++.+. .+.+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNH-----------FPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 57899999999999975 999999987421 122 3467788888888765433 356899999999
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESL 909 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 909 (930)
++|||||+.+|++||||||||+||+++...+.+.|++..+ |+|+|+|||+++.+.. ||||++|++|+|++.|+|+|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988753 8999999999998865 999999999999999999999
Q ss_pred hccCCCcHHH
Q 040875 910 LAKGPAGAYY 919 (930)
Q Consensus 910 l~~~~~g~y~ 919 (930)
+++ +...|.
T Consensus 229 ~~~-p~~~~~ 237 (353)
T 1oxx_K 229 YDN-PVSIQV 237 (353)
T ss_dssp HHS-CSSHHH
T ss_pred HhC-cccHHH
Confidence 974 555553
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.5e-46 Score=417.28 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC------CCHH
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS------YHLR 757 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~------~~~~ 757 (930)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 489999999995 3469999999999999999999999999999999999999999999999999876 543
Q ss_pred HhhcceEEEccCCCCCc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHH
Q 040875 758 SLRRHVALVSQEPALFA-VTVRENITYGAS-DKID----ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQ 831 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~-~~~~----d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQ 831 (930)
.+++++||||++.+|. -|++||+.|+.. ...+ ++++.++++.+++.++.. ..+.+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHH
Confidence 3678999999999986 599999988631 1122 245778888888876543 345689999999
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhH
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHES 908 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~e 908 (930)
|+||||||+.+|++||||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+. .||||++|++|+|++.|+|+|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 899999999999886 499999999999999999999
Q ss_pred HhccCCCcHHH
Q 040875 909 LLAKGPAGAYY 919 (930)
Q Consensus 909 Ll~~~~~g~y~ 919 (930)
++++ +...|.
T Consensus 227 l~~~-p~~~~~ 236 (372)
T 1g29_1 227 VYDK-PANTFV 236 (372)
T ss_dssp HHHS-CSBHHH
T ss_pred HHhC-cccHHH
Confidence 9974 555553
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-46 Score=398.98 Aligned_cols=211 Identities=23% Similarity=0.352 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCCcEEEECCccCCCCCHHHh-h
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGEDIRSYHLRSL-R 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R 760 (930)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+..+. |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999953 4699999999999999999999999999999999999 89999999999999998887665 4
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCCC---C-CCC----HHHHHHHHHHhcch-hHHhcCccccccccCCCCCC-CChHH
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGAS---D-KID----ESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQ-LSGGQ 829 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~~---~-~~~----d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~-LSgGQ 829 (930)
..++||||+|.+|.+ |++||+.++.. . ..+ ++++.++++.+++. ++. +. ...+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SR----YLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GS----BTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cC----CcccCCCHHH
Confidence 569999999999876 99999976421 0 111 24566777777763 322 22 2345 99999
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCEEEEEeCCEEEEecCh
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN--CDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G~~ 906 (930)
|||++|||||+++|++||||||||+||+++.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 48999999999999876 599999999999999999
Q ss_pred hH
Q 040875 907 ES 908 (930)
Q Consensus 907 ~e 908 (930)
++
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.8e-46 Score=394.46 Aligned_cols=208 Identities=20% Similarity=0.329 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCC-CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 685 IELQYVHFAYPAR-PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 685 I~~~nvsf~Y~~~-~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
|+++|++++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998765 34 7899
Q ss_pred E-EEccCCCCCcccHHHHhhcCCC-CCCCHHHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 764 A-LVSQEPALFAVTVRENITYGAS-DKIDESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 764 ~-~V~Q~p~LF~gTIreNl~~g~~-~~~~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+ ||||+|.+ ..|++||+.++.. ...+++++.++++..++. +.. ...+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-----------GSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999987531 123567888888888776 432 2446689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh-ccC-EEEEEeCCEEEEecChhHHhc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQ-NCD-MIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~-~~D-rI~vl~~G~ive~G~~~eLl~ 911 (930)
++|++|+||||||+||+++.+.+.+.|++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++|+++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 9999999999986 599 999999999999999999984
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.7e-46 Score=396.39 Aligned_cols=215 Identities=23% Similarity=0.354 Sum_probs=180.8
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCCcEEEECCccCCCCCHHHh-h
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF--YDPLKGVVKIDGEDIRSYHLRSL-R 760 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R 760 (930)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+...+ |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57899999999999988887665 4
Q ss_pred cceEEEccCCCCCcc-cHHHHhhcCC--------CCCCCH----HHHHHHHHHhcchhHHhcCccccccccCCCCC-CCC
Q 040875 761 RHVALVSQEPALFAV-TVRENITYGA--------SDKIDE----SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGL-QLS 826 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~g-TIreNl~~g~--------~~~~~d----~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~-~LS 826 (930)
+.++||||+|.+|.+ |+++|+.+.. ....++ +++.++++.+++.+.. .+ .... +||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~----~~~~~~LS 166 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LT----RSVNVGFS 166 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TT----SBTTTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hc----CCcccCCC
Confidence 569999999998876 8999986521 001222 3455666666553110 11 2233 599
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc--cCEEEEEeCCEEEEe
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN--CDMIAVLEQGRVVEE 903 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~ 903 (930)
||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||||++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999875 48999999999999875 899999999999999
Q ss_pred cChhHHhc
Q 040875 904 GSHESLLA 911 (930)
Q Consensus 904 G~~~eLl~ 911 (930)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8e-46 Score=392.21 Aligned_cols=201 Identities=27% Similarity=0.387 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|+++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999961 23599999999999999999999999999999999999999999998 46789
Q ss_pred EEEccCCCCC-cccHHHHhhcCCC---C------CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 764 ALVSQEPALF-AVTVRENITYGAS---D------KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 764 ~~V~Q~p~LF-~gTIreNl~~g~~---~------~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+||||+|.+| ..|++||+.++.. . ..+++++.++++.+++.++.. ..+.+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHH
Confidence 9999999887 6799999988631 0 112356788888888866533 24568999999999
Q ss_pred HHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEccCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 040875 834 AIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-V-GRTSVVVAHRLSTIQ-NCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 834 aLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~-~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~~~eLl 910 (930)
+|||||+++|++||||||||+||+++.+.+.+.|++.. + |+|+|+|||+++.+. .||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998875 3 899999999999985 599999999999 9999999997
Q ss_pred c
Q 040875 911 A 911 (930)
Q Consensus 911 ~ 911 (930)
+
T Consensus 217 ~ 217 (253)
T 2nq2_C 217 T 217 (253)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-45 Score=374.67 Aligned_cols=197 Identities=19% Similarity=0.360 Sum_probs=169.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999995 3 6999999999999999999999999999999999999999999999999886 36889
Q ss_pred eEEEccCCCCCcc-cHHHHhhcCCC--C-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 763 VALVSQEPALFAV-TVRENITYGAS--D-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 763 i~~V~Q~p~LF~g-TIreNl~~g~~--~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
++||||+|.+|.+ |++||+.++.. . ..+++++.++++.+++.+. ...+.+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHH
Confidence 9999999999986 99999987521 1 1236678888888776432 34567999999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCCEEE
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 901 (930)
|+++|++||||||||+||+++.+.+.+.|++.. +|+|+|++||+++.+.. ||+|+ +.+|+|-
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~~ 211 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKID 211 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC---
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCccc
Confidence 999999999999999999999999999998875 48999999999999987 56665 5557663
No 48
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-34 Score=344.12 Aligned_cols=316 Identities=20% Similarity=0.230 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHH
Q 040875 8 IAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFF 87 (930)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~ 87 (930)
..+++.++...++...+.+...++|..+++++++.+.++++. . ++|+++|++++|++.+++.+...+..++..+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 75 IGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR-F-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcc-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666778899999999999999999999999984 4 89999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHH
Q 040875 88 GSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSAL 167 (930)
Q Consensus 88 ~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r 167 (930)
+.+++.++++|.++++.++++|+++++..++.+...+..++.++..+++.+.++|.++|||+||+|+||+.+.++|.+..
T Consensus 153 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 232 (587)
T 3qf4_A 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232 (587)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040875 168 QGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASA 246 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a 246 (930)
++..+...+.....+.... ..++.......++|+|.+++..+.+++|.+++++..+.....|+..++..+..+.++.+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 312 (587)
T 3qf4_A 233 ESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777766666555555 445555566777889999888999999999999988888889999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 247 GEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 247 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|+.++++.+++.+.... ...++...+.|+++|++|+|+.+ +.++|+|+||+|++||+++||||||||||||+++|.
T Consensus 313 ~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 313 AKRVLEVLNEKPAIEEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp HHHHHHHHHCCCSCCCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred HHHHHHHHcCCCccCCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999987654432221 11122335689999999999743 467999999999999999999999999999999985
Q ss_pred c
Q 040875 327 E 327 (930)
Q Consensus 327 ~ 327 (930)
+
T Consensus 391 g 391 (587)
T 3qf4_A 391 R 391 (587)
T ss_dssp T
T ss_pred C
Confidence 3
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.6e-35 Score=345.37 Aligned_cols=313 Identities=18% Similarity=0.229 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.+++..++...+.+...++|..+++++++.+.+||+. . ++|+++|++++|++.+++.+...+...+..+..+++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 153 (578)
T 4a82_A 76 PIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-N-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIAL 153 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-S-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777889999999999999999999999994 5 89999999999999999998877666777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.+++.|.+++++++++|+++++..++.+...+..++..+..+++.+.++|.++|||+||+|+||+.+.++|.+..++.
T Consensus 154 ~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 233 (578)
T 4a82_A 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNF 233 (578)
T ss_dssp HHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+.... ..++......+++|+|.+++..+.+++|.+++++..+.....|+..++..+..+.++.+|++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~r 313 (578)
T 4a82_A 234 LTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777776666 445555666777888988888899999999999988888889999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++++++.+++.+.... ....+...+.|+++|++|+|+. .+.++|+|+||+|++||+++||||||||||||+++|.+
T Consensus 314 i~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 314 VFQLIDEDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp HHHHHTCCCSSCCCTT-CCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred HHHHHcCCCcccCCCC-ccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 9999987654332211 1122233468999999999974 34679999999999999999999999999999999863
No 50
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.1e-40 Score=358.61 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=188.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccEEEEEEEEEcCCC
Q 040875 618 YINAKSLFEIFLVLVSTGKVIADAGTMTTDIAKGSNAVASVFAVLDRDTKINPEDPKGYRPEKITGHIELQYVHFAYPAR 697 (930)
Q Consensus 618 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~ 697 (930)
..+.+...+++.+... ..++..+..++..+.++..+..|+.++++.+++... ....+ +...+.|+++||+|+|+
T Consensus 39 ~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~~~~~-~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 39 AGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT--GEGSW-KSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC--SSCCT-HHHHHHHHHTTCCHHHH--
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--CCCcc-cccCCeEEEEEEEEEcC--
Confidence 3344444444444333 577888889999999999999999999875432211 11111 11224699999999995
Q ss_pred CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccH
Q 040875 698 PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTV 777 (930)
Q Consensus 698 ~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTI 777 (930)
.++|+|+||+|++||++|||||||||||||+++|.|++ +|+| +++++|+|.+|.+|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 36999999999999999999999999999999999999 8998 467899999999999
Q ss_pred HH-HhhcCCCCCCCHHHHHHHHHHhcchhHHhc-CccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCC
Q 040875 778 RE-NITYGASDKIDESEIIEAAKAANAHDFIAG-LSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855 (930)
Q Consensus 778 re-Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~-Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaL 855 (930)
++ ||.+++ +.++ +++++++. ||+|+| |.+|||||||| |||++++|+||| ||+|
T Consensus 170 ~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 170 ADTRAALVD--DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp TTCSCEEEE--EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHhhccCc--cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 98 998873 3443 23456676 899998 77999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHHHhh
Q 040875 856 DSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVSLQT 926 (930)
Q Consensus 856 D~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~~~~ 926 (930)
|+++++.|++ +|||++++..||+| +|++|+|++.|+|++| ++.|++++..+.
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el-----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW-----KSFFVRLWGRLD 276 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH-----HHHHHHSTTTTT
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH-----HHHHHHHHHHcc
Confidence 9999988862 39999999999999 9999999999999999 378998887553
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-33 Score=336.12 Aligned_cols=313 Identities=29% Similarity=0.406 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHHHH
Q 040875 11 IAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFGSY 90 (930)
Q Consensus 11 ~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (930)
++.+++..++...+.++..++|..+++++++++.+||+. . ++|+++|++++|++.+++.+...+...+..+..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 154 (595)
T 2yl4_A 77 AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-T-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 154 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-S-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555677789999999999999999999999995 5 79999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHHHH
Q 040875 91 IVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQGS 170 (930)
Q Consensus 91 ~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~~e 170 (930)
++.++++|.++++.++++|+++++..++.+...+..++..+..++..+.++|.++|||+||+|++|+.+.++|.+..++.
T Consensus 155 ~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 234 (595)
T 2yl4_A 155 SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHV 234 (595)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040875 171 VKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAGEH 249 (930)
Q Consensus 171 ~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~~r 249 (930)
.+...|.....+...+ ..++.......++|+|.+++..|.+++|.+++++.++.....|+..+...+..+.++.+|++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~r 314 (595)
T 2yl4_A 235 MQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGR 314 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666665555 444555556667888988888899999999988888888889999999999999999999999
Q ss_pred HHHHhccCCCCCCCCccCCcccCcccc-EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 250 IRDVIKRVPDIDSENMEGETLEKFLGE-VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 250 i~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++++.+++.+.... ...++...+. |+++|++|+|+++++.++|+|+||++++||+++||||||||||||+++|.
T Consensus 315 i~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 315 LWELLEREPKLPFNEG-VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp HHHHHTCCCSSCSSCS-BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHT
T ss_pred HHHHHcCCCccCCCCC-CCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999987554332111 1111223467 99999999998654567999999999999999999999999999999985
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-36 Score=354.73 Aligned_cols=200 Identities=25% Similarity=0.299 Sum_probs=168.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.+ +.++
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999942 3689999999999999999999999999999999999999999985 2369
Q ss_pred EEEccCCCC-CcccHHHHhhcC-CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 764 ALVSQEPAL-FAVTVRENITYG-ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g-~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+||||++.+ +..|+.+|+... .......+.+.++++..++.+. ......+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999965 678999998643 1100123445556666555432 224456899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ--GRVVEEGSHESLLA 911 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~eLl~ 911 (930)
+|++|||||||++||..+...+.+.|++.. .|.|||+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 38999999999999975 999999986 88999999998875
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-34 Score=340.91 Aligned_cols=314 Identities=24% Similarity=0.348 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHH
Q 040875 8 IAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFF 87 (930)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~ 87 (930)
...++.+++..++...+.+...++|..+++++++.+.+||+. . ++|+++|++++|++.+++.+...+..++..+..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 166 (598)
T 3qf4_B 89 LTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-T-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLA 166 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH-S-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666777889999999999999999999999995 5 89999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHH
Q 040875 88 GSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSAL 167 (930)
Q Consensus 88 ~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r 167 (930)
+.+++.+++.|.+++++++++|+++++..++.+...+..++..+..+++.+.++|.++|+|+||+|+||+.+.++|.+..
T Consensus 167 ~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 246 (598)
T 3qf4_B 167 GAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVN 246 (598)
T ss_dssp HHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040875 168 QGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASA 246 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a 246 (930)
++..+...|.....+.... ..++......+++|+|.+++..+.+++|.+++++..+.....|+..++..+..+.++.+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 326 (598)
T 3qf4_B 247 ESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALAS 326 (598)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888777766655 455556666777889998888899999999988888877888999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 247 GEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 247 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|+.++++.+++.+... ...+....+.|+++|++|+|+. +.++|+|+||+|++||+++||||||||||||+++|.
T Consensus 327 ~~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 327 AERIFEILDLEEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp HHHHHHHTTSCCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 999999998765433211 1122234568999999999964 457999999999999999999999999999999985
Q ss_pred c
Q 040875 327 E 327 (930)
Q Consensus 327 ~ 327 (930)
+
T Consensus 403 g 403 (598)
T 3qf4_B 403 R 403 (598)
T ss_dssp T
T ss_pred c
Confidence 3
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.9e-36 Score=355.95 Aligned_cols=200 Identities=27% Similarity=0.311 Sum_probs=170.6
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999953 3689999999999999999999999999999999999999999976 2469
Q ss_pred EEEccCCCC-CcccHHHHhhcC-CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 764 ALVSQEPAL-FAVTVRENITYG-ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 764 ~~V~Q~p~L-F~gTIreNl~~g-~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+|+||++.+ +..|+++|+... .....+++.+.++++..++.+.. + ....+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------D----RNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------T----SBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------c----CChhhCCHHHHHHHHHHHHHHh
Confidence 999999965 678999998653 11001244566777777765432 2 3456899999999999999999
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ--GRVVEEGSHESLLA 911 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~eLl~ 911 (930)
+|++|||||||++||+++...+.+.|++.. .|.|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 58999999999999975 999999986 88899999999875
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-35 Score=346.95 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=169.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..++++|++.+|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 36899999999953 3688899999999999999999999999999999999999999998764 5
Q ss_pred eEEEccCCC-CCcccHHHHhhcCCCCC--CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 763 VALVSQEPA-LFAVTVRENITYGASDK--IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 763 i~~V~Q~p~-LF~gTIreNl~~g~~~~--~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
++++||++. .|..|+++|+.+..... ...+.+.++++.+++.++. ...+.+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-----------ESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-----------TSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHH
Confidence 899999986 46889999997642211 2234456677777665432 234568999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEEEecChhHHh
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ--GRVVEEGSHESLL 910 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~eLl 910 (930)
+++|+||||||||++||+.+...+.+.|+++. .|+|||+|||+++.+.. ||||+||++ |.+...++|.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999999874 48999999999999976 999999986 6677778877654
No 56
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.9e-33 Score=330.85 Aligned_cols=313 Identities=19% Similarity=0.262 Sum_probs=267.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHH
Q 040875 8 IAWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFF 87 (930)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~ 87 (930)
...++.++...++...+.+...++|..+++++++++.+||+. . ++|+++|++++|++.+++.+...+...+..+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i 154 (582)
T 3b5x_A 77 VRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ-E-STGGLLSRITYDSEQVAGATSRALVSIVREGASII 154 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666677889999999999999999999999994 5 79999999999999999998877788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHH
Q 040875 88 GSYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSAL 167 (930)
Q Consensus 88 ~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r 167 (930)
+.+++.++++|.++++.++++|+++++..++.+...+..++..+..++..+.+.|.++|+|+||+|++|+.+.++|.+..
T Consensus 155 ~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 234 (582)
T 3b5x_A 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVS 234 (582)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040875 168 QGSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASA 246 (930)
Q Consensus 168 ~~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a 246 (930)
++..+...|.....+.... ..++......+++|+|.+++..|.+++|.+++++.++.....|+..+...+..+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 314 (582)
T 3b5x_A 235 NSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAA 314 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777776666665555 445555666677888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 247 GEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 247 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|+.++++.+++.+.. ..+.+...+.|+++|++|+|+++ +.++|+|+||+|++||+++||||||||||||+++|.
T Consensus 315 ~~ri~~~l~~~~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 315 CQTLFGLMDLETERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred HHHHHHHHcCCCcCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999999865543211 11112224679999999999743 257999999999999999999999999999999985
No 57
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.9e-33 Score=330.84 Aligned_cols=312 Identities=22% Similarity=0.352 Sum_probs=266.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCCChhhHHHHHHhhHHHHHHHhhchHHHHHHHHHHHHH
Q 040875 9 AWIAAFLEAYCWTRTGERQATRMRAIYLKAILRQDVGYFDLHVTSTAEIISSVSNDTLVIQDVLSEKLPNFLVNVAIFFG 88 (930)
Q Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~r~~~~~~l~~~~~~~~~~~~~~~g~i~n~~s~d~~~i~~~~~~~~~~~~~~~~~~~~ 88 (930)
..++.++...++...+.+...++|..+++++++++.+||+. . ++|+++|++++|++.+++.+...+...+..+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 155 (582)
T 3b60_A 78 RGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-Q-STGTLLSRITYDSEQVASSSSGALITVVREGASIIG 155 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-S-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677889999999999999999999999995 5 799999999999999999888777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcccHHHHHHHHHHHH
Q 040875 89 SYIVGFMILWQLVVVGFPFVVLLVVLGLIYGRILMVLARKMREEYNKANTIVERAISSVRTVYAFVGEGKTLDEFSSALQ 168 (930)
Q Consensus 89 ~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~E~l~~ir~vk~~~~e~~~~~~~~~~r~ 168 (930)
.+++.++++|.++++.++++|+++++..++.+...+..++..+..++..+.+.|.++|+|+||+|++|+.+.++|.+..+
T Consensus 156 ~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 235 (582)
T 3b60_A 156 LFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235 (582)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040875 169 GSVKLGLKQGLCKGFASG-INAITYAIWSFLAYYGSRLVMYHGAKGGAVFAAGTTIVVGGQALGAGLSNFKYISEAASAG 247 (930)
Q Consensus 169 ~e~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vft~~~~~~~~~~~l~~~~~~~~~~~~a~~a~ 247 (930)
+..+...|.....+.... ..++......+++|+|.+++..|.+++|.+++++.++.....|+..+...+..+.++.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~ 315 (582)
T 3b60_A 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAAC 315 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777776666665555 4455555666778888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 248 EHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 248 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+.++++.+++.+.. ..+.+...+.|+++|++|+|+++ +.++|+|+||+|++||+++||||||||||||+++|.
T Consensus 316 ~ri~~~l~~~~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 316 QTLFAILDSEQEKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp HHHHHHHHSCCSCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999875543221 11112234679999999999743 257999999999999999999999999999999985
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-35 Score=357.02 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=155.7
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcce
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHV 763 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 763 (930)
.|+++|++|+|+++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|+++|. .++
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 59999999999743 246899999999999999999999999999999999999999999999872 147
Q ss_pred EEEccCCCC-----CcccHHHHh---------------------------------------------------------
Q 040875 764 ALVSQEPAL-----FAVTVRENI--------------------------------------------------------- 781 (930)
Q Consensus 764 ~~V~Q~p~L-----F~gTIreNl--------------------------------------------------------- 781 (930)
+|++|++.. ...|+++|+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 123444443
Q ss_pred ---------hcCCC----------------------------------------CCCCHHHHHHHHHHhcchhHHhcCcc
Q 040875 782 ---------TYGAS----------------------------------------DKIDESEIIEAAKAANAHDFIAGLSE 812 (930)
Q Consensus 782 ---------~~g~~----------------------------------------~~~~d~ei~~al~~~~l~~~i~~Lp~ 812 (930)
.++.. ....++++.+.++..++.+...
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---- 894 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---- 894 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh----
Confidence 22100 0112345556666666543210
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCE
Q 040875 813 GYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDM 891 (930)
Q Consensus 813 gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~Dr 891 (930)
....+.+||||||||++|||||+.+|+||||||||++||+++...+.+.|++. +.|||+|||+++.+.. ||+
T Consensus 895 -----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 895 -----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp -----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 01345689999999999999999999999999999999999999999999865 6799999999999865 999
Q ss_pred EEEEeCCEEEEecC
Q 040875 892 IAVLEQGRVVEEGS 905 (930)
Q Consensus 892 I~vl~~G~ive~G~ 905 (930)
|++|++|++++.|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999998775
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=341.91 Aligned_cols=198 Identities=26% Similarity=0.379 Sum_probs=167.3
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAE-----KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~G-----e~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
++++|+|++ ...+++|+||++++| |++||+|+||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 677889964 234789999999999 8899999999999999999999999999962 21 346
Q ss_pred eEEEccCCC-CCcccHHHHhhcCCCC-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 763 VALVSQEPA-LFAVTVRENITYGASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 763 i~~V~Q~p~-LF~gTIreNl~~g~~~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
++++||++. .|.+|+++|+...... ..+.+...++++..++.+.. .....+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 6789999998643221 23455666778887775432 2346689999999999999999
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQ--GRVVEEGSHESLLA 911 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~eLl~ 911 (930)
.+|+||||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+.. ||||++|++ |+++..|+|++++.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999999999999998864 48999999999999976 999999996 99999999999996
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-34 Score=342.36 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=161.2
Q ss_pred cEEE--------EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE---------EE
Q 040875 684 HIEL--------QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV---------KI 746 (930)
Q Consensus 684 ~I~~--------~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I---------~i 746 (930)
.|++ +|++++|++. ..+|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 8999999532 24899999 999999999999999999999999999999999996 45
Q ss_pred CCccCCCCCHH--HhhcceEEEccCC----CCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 747 DGEDIRSYHLR--SLRRHVALVSQEP----ALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 747 dG~di~~~~~~--~lR~~i~~V~Q~p----~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
+|.++.+.... ..+..+++++|++ .++.+|++||+.... ..+++.++++..++.+..+ .
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~-----------~ 224 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLD-----------R 224 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGG-----------S
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhC-----------C
Confidence 67665432111 1234688888864 455679999996431 2245778888888765432 2
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
...+||||||||++|||||+++|+|||||||||+||+++...+.+.|+++. +|.|+|+|||+++.+.. ||||++|+++
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 345799999999999999999999999999999999999999999998874 48999999999999875 9999999864
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.9e-33 Score=336.18 Aligned_cols=197 Identities=25% Similarity=0.350 Sum_probs=165.6
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
..+...|++++|++ .++|+|+||+|++||++||+||||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 36888899999953 469999999999999999999999999999999995 665 6655421 124
Q ss_pred eEEEccCC-CC-CcccHHHHhhcCCCCCCCHHHHHHHHHHhcch-hHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 763 VALVSQEP-AL-FAVTVRENITYGASDKIDESEIIEAAKAANAH-DFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 763 i~~V~Q~p-~L-F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~-~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
++|++|++ .+ ..-|+++|+.+... .. ++++.++++..++. +.... ...+||||||||++|||||
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAV 563 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 78999986 34 45699999976211 12 77889999999984 44332 2347999999999999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCEEE-EecChhHHhc
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGRVV-EEGSHESLLA 911 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~eLl~ 911 (930)
+.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988 69999999999999976 9999999999997 5899999875
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-34 Score=337.18 Aligned_cols=196 Identities=23% Similarity=0.334 Sum_probs=156.5
Q ss_pred EEE-EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE---------EECCccCCCC
Q 040875 685 IEL-QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV---------KIDGEDIRSY 754 (930)
Q Consensus 685 I~~-~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I---------~idG~di~~~ 754 (930)
.++ +|++++|++. .++|+|+| +|++||++||+||||||||||+++|.|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 5899999642 24899999 999999999999999999999999999999999996 4577665432
Q ss_pred CHH--HhhcceEEEccCCC----CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 755 HLR--SLRRHVALVSQEPA----LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 755 ~~~--~lR~~i~~V~Q~p~----LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
... ..+..+++++|++. ++.+|+++|+.... ..+++.++++.+++.+.. + ....+||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~-------~----~~~~~LSgG 162 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVL-------E----REIQHLSGG 162 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTT-------T----SBGGGCCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhh-------h----CChhhCCHH
Confidence 111 12346889998754 34469999985421 124577888888875432 2 234589999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhc-cCEEEEEeCC
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQN-CDMIAVLEQG 898 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G 898 (930)
||||++|||||+.+|+|||||||||+||+++...+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998864 48999999999999876 9999999864
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.1e-34 Score=343.96 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=140.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhcccCCC-------CcEEEECCccC
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTII---------------------GLIERFYDPL-------KGVVKIDGEDI 751 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~---------------------~lL~rl~~~~-------~G~I~idG~di 751 (930)
..+|+||||+|++||++||+||||||||||+ +.+.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8899999998 56677777765
Q ss_pred CCCCHHHhhcceEEEccCCCCC--------------------cccHHHHhhcCCCCCCC--HHH-----HHHHHHHhcch
Q 040875 752 RSYHLRSLRRHVALVSQEPALF--------------------AVTVRENITYGASDKID--ESE-----IIEAAKAANAH 804 (930)
Q Consensus 752 ~~~~~~~lR~~i~~V~Q~p~LF--------------------~gTIreNl~~g~~~~~~--d~e-----i~~al~~~~l~ 804 (930)
... .|+.+++|+|.+.++ .-|++||+.+....... +.+ +.++++..++
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF- 185 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH-
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH-
Confidence 432 355677777765432 45899999774210111 111 1111222211
Q ss_pred hHHhcCccccccc-cCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEc
Q 040875 805 DFIAGLSEGYDTW-CGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVA 880 (930)
Q Consensus 805 ~~i~~Lp~gldt~-vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~Ia 880 (930)
.+.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+++...+.+.|+++. +|+|+|+||
T Consensus 186 --l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 186 --LQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp --HHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1111 22211 123466899999999999999999998 999999999999999999999998874 589999999
Q ss_pred cCchhhhccCEEEEE------eCCEEEEecChhHHhccCCCcHHHH
Q 040875 881 HRLSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGPAGAYYS 920 (930)
Q Consensus 881 Hrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~~g~y~~ 920 (930)
|+++.+..||||++| ++|++++.|+|+++.++ +...+..
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~-~~~~~~~ 306 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND-PNSLTGQ 306 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTC-TTCHHHH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcC-chhHHHH
Confidence 999998889999999 89999999999999973 4444433
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.6e-34 Score=344.20 Aligned_cols=199 Identities=26% Similarity=0.352 Sum_probs=151.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------cccCCCCcEEEECCccCCCCCHHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE----------------------RFYDPLKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~----------------------rl~~~~~G~I~idG~di~~~~~~~ 758 (930)
++|+||||+|++||++||+||||||||||+++++ |+. +..|.|.++|.++...+...
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTCC
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCcc
Confidence 4899999999999999999999999999998754 333 34578999999987654322
Q ss_pred hhc-----------------------------------------ceEEEccCCCC-------------------------
Q 040875 759 LRR-----------------------------------------HVALVSQEPAL------------------------- 772 (930)
Q Consensus 759 lR~-----------------------------------------~i~~V~Q~p~L------------------------- 772 (930)
.+. ..++++|+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 12333333222
Q ss_pred --------CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC-
Q 040875 773 --------FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP- 843 (930)
Q Consensus 773 --------F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~- 843 (930)
+.-|++||+.+... ....++..++++.+++.+ ......+.+||||||||++|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFAS-IPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTT-CHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHHH-hhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 13588888877542 112234445555554421 1234567799999999999999999887
Q ss_pred --CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------eCCEEEEecChhHHhc
Q 040875 844 --AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 844 --~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~ 911 (930)
+|||||||||+||+.+...|.+.|+++. +|+|||+|||+++.+..||||++| ++|+|++.|+|+|+.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 5999999999999999999999998875 589999999999999889999999 8999999999999986
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-32 Score=334.91 Aligned_cols=206 Identities=27% Similarity=0.392 Sum_probs=157.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhcccCCC------C------cEEEECCccCCCCCH---
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTII---------GLIERFYDPL------K------GVVKIDGEDIRSYHL--- 756 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~---------~lL~rl~~~~------~------G~I~idG~di~~~~~--- 756 (930)
..|+||||+|++||++||+|+||||||||+ +++.+...+. + +.|.+|+.++...+.
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 368999999999999999999999999997 3343333332 2 236667666643221
Q ss_pred -------HHhh-------------------------------cceEEEccCCCCCc------------------------
Q 040875 757 -------RSLR-------------------------------RHVALVSQEPALFA------------------------ 774 (930)
Q Consensus 757 -------~~lR-------------------------------~~i~~V~Q~p~LF~------------------------ 774 (930)
++.| +..++++|+..++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 33577888776553
Q ss_pred ---------ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC--
Q 040875 775 ---------VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP-- 843 (930)
Q Consensus 775 ---------gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~-- 843 (930)
.|++||+.+... ....++..++|+.++|.. ..++..+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-IPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-CHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhc-chhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 467777765432 222345556666666632 2356788899999999999999999876
Q ss_pred -CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------eCCEEEEecChhHHhccCCC
Q 040875 844 -AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------EQGRVVEEGSHESLLAKGPA 915 (930)
Q Consensus 844 -~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~~ 915 (930)
+||||||||++||+++.+.+++.|+++. +|+|||+|+|+++.++.||+|++| ++|+|++.|+|+|++++ +
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~-~- 904 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKN-P- 904 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSC-T-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhC-C-
Confidence 7999999999999999999999999875 599999999999999999999999 89999999999999973 4
Q ss_pred cHHH
Q 040875 916 GAYY 919 (930)
Q Consensus 916 g~y~ 919 (930)
+.|.
T Consensus 905 ~syt 908 (916)
T 3pih_A 905 HSYT 908 (916)
T ss_dssp TCHH
T ss_pred chHH
Confidence 4443
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-32 Score=319.27 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=152.9
Q ss_pred EEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE-----------EECCccCCCCCHH
Q 040875 689 YVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV-----------KIDGEDIRSYHLR 757 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I-----------~idG~di~~~~~~ 757 (930)
|++++|.. ....|++++ ++++||++||+||||||||||+++|.|+++|++|+| .++|.++.++...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 46889953 334678877 699999999999999999999999999999999998 3455544333333
Q ss_pred HhhcceE--EEccCC----CCCcc---cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 758 SLRRHVA--LVSQEP----ALFAV---TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 758 ~lR~~i~--~V~Q~p----~LF~g---TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
.+++.+. +.||.. ..+.+ ++.+++.... ...++++.++++.+++.+..+ ....+||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 225 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLK-----------RDIEKLSGG 225 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhC-----------CChHHCCHH
Confidence 3344332 334432 12222 6777775432 345678889999988865432 345689999
Q ss_pred HHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhc-cCEEEEEeCCEE
Q 040875 829 QKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 900 (930)
||||++|||||+++|+|||||||||+||+++...+.+.|+++.+ |+|+|+||||++.+.. ||||++|++|..
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999998754 8999999999999976 999999987653
No 67
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.5e-32 Score=320.29 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=152.2
Q ss_pred EEEEEcCCCCCccceeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE-----------EECCccCCCCCH
Q 040875 689 YVHFAYPARPDVIIFKGFSINIE-AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV-----------KIDGEDIRSYHL 756 (930)
Q Consensus 689 nvsf~Y~~~~~~~vL~~vsl~i~-~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I-----------~idG~di~~~~~ 756 (930)
+++.+|.. + -++-..|.++ +||.+||+||||||||||+++|.|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~--~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKV--N--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESST--T--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCC--C--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 46789953 3 2344445444 899999999999999999999999999999999 678877643321
Q ss_pred HH------hhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHH
Q 040875 757 RS------LRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQK 830 (930)
Q Consensus 757 ~~------lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQr 830 (930)
.. .+..+.+++|.|.++.+|+++++.... ..+++.++++..++.+.. |. ...+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~~~~l~~l~l~~~~-------~~----~~~~LSgGe~ 144 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----ERGKKDEVKELLNMTNLW-------NK----DANILSGGGL 144 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----CSSCHHHHHHHTTCGGGT-------TS----BGGGCCHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch----hHHHHHHHHHHcCCchhh-------cC----ChhhCCHHHH
Confidence 11 122355566677788899999885321 223566788888875432 22 3457999999
Q ss_pred HHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhc-cCEEEEEeCCE
Q 040875 831 QRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 831 QrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 899 (930)
||++|||||+++|+|||||||||+||+++...+.+.|+++.+|+|+|+|+||++.+.. ||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999998779999999999999876 99999998753
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4.1e-31 Score=318.89 Aligned_cols=210 Identities=23% Similarity=0.371 Sum_probs=158.0
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HhcccC-------C---------------
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGL-IERFYD-------P--------------- 739 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~l-L~rl~~-------~--------------- 739 (930)
..++++|+++ . +|+||||+|++||++||+|+||||||||++. |.|+.. |
T Consensus 501 ~~L~v~~l~~----~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR----N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE----T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee----c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4699999986 1 5899999999999999999999999999996 776542 2
Q ss_pred ---CCc-------EEEECCccCCCCCH----------HHhhcceEEEcc-------------------------------
Q 040875 740 ---LKG-------VVKIDGEDIRSYHL----------RSLRRHVALVSQ------------------------------- 768 (930)
Q Consensus 740 ---~~G-------~I~idG~di~~~~~----------~~lR~~i~~V~Q------------------------------- 768 (930)
.+| .|.+||.++..-+. +.+|+.++.+|+
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 366 78999998865432 344544333332
Q ss_pred CCCCCc-------------------------ccHHHHhh--------cCCCCCCCHHHHHHHHHHhcchhHHhcCccccc
Q 040875 769 EPALFA-------------------------VTVRENIT--------YGASDKIDESEIIEAAKAANAHDFIAGLSEGYD 815 (930)
Q Consensus 769 ~p~LF~-------------------------gTIreNl~--------~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gld 815 (930)
|-.++. -||.||+. +... ....+++.++++.+++.. .
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~~~~~~~~~L~~~gL~~---------~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ESAIFRALDTLREVGLGY---------L 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SHHHHHHHHHHHHTTCTT---------S
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-chHHHHHHHHHHHcCCCc---------c
Confidence 111111 24555553 2211 111123344444444421 1
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccC---CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCE
Q 040875 816 TWCGDRGLQLSGGQKQRIAIARAILKN---PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDM 891 (930)
Q Consensus 816 t~vge~G~~LSgGQrQrlaLARALl~~---~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~Dr 891 (930)
..+....+||||||||++|||||+++ |+||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..|||
T Consensus 723 -~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 723 -RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp -BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred -cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 24567789999999999999999996 69999999999999999999999998874 59999999999999988999
Q ss_pred EEEE------eCCEEEEecChhHHhc
Q 040875 892 IAVL------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 892 I~vl------~~G~ive~G~~~eLl~ 911 (930)
|++| ++|+|++.|+|+++++
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 9999 6999999999999987
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.7e-30 Score=312.79 Aligned_cols=209 Identities=26% Similarity=0.359 Sum_probs=155.3
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-ccc----C---CCCc------------
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE-RFY----D---PLKG------------ 742 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~-rl~----~---~~~G------------ 742 (930)
..++++|++. .+|+||||+|++||.+||+|+||||||||++.++ +.. . +..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3589998851 2689999999999999999999999999999854 221 1 1233
Q ss_pred -EEEECCccCCCCCH----------HHhh---------cceEEEccCCCC---------------------C--------
Q 040875 743 -VVKIDGEDIRSYHL----------RSLR---------RHVALVSQEPAL---------------------F-------- 773 (930)
Q Consensus 743 -~I~idG~di~~~~~----------~~lR---------~~i~~V~Q~p~L---------------------F-------- 773 (930)
.|.+||.++..-+. +..| ++.+|+||.+.+ |
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 48899988853221 1122 345788885322 1
Q ss_pred --------------------------cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCcccccc-ccCCCCCCCC
Q 040875 774 --------------------------AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDT-WCGDRGLQLS 826 (930)
Q Consensus 774 --------------------------~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt-~vge~G~~LS 826 (930)
.-|++||+.+... ....++..++++.++ ++. ..+..+.+||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~~~~~~~~~~L~~~g-----------L~~~~l~~~~~~LS 847 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-IPKIKRKLETLYDVG-----------LGYMKLGQPATTLS 847 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-CHHHHHHHHHHHHTT-----------CSSSBTTCCGGGCC
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-chhHHHHHHHHHHcC-----------CCcccccCchhhCC
Confidence 1145555544321 101122233444433 333 3456778999
Q ss_pred hHHHHHHHHHHHhccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------e
Q 040875 827 GGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------E 896 (930)
Q Consensus 827 gGQrQrlaLARALl~~~---~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~ 896 (930)
||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..||||++| +
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999999875 9999999999999999999999998875 589999999999999889999999 7
Q ss_pred CCEEEEecChhHHhc
Q 040875 897 QGRVVEEGSHESLLA 911 (930)
Q Consensus 897 ~G~ive~G~~~eLl~ 911 (930)
+|+|++.|+|+++++
T Consensus 928 ~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAE 942 (972)
T ss_dssp CCSEEEEESHHHHHT
T ss_pred CCEEEEecCHHHHHh
Confidence 899999999999997
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.6e-30 Score=298.11 Aligned_cols=201 Identities=17% Similarity=0.255 Sum_probs=153.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC--------------------------------------CCCcE
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD--------------------------------------PLKGV 743 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--------------------------------------~~~G~ 743 (930)
++++++|++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999966653 44789
Q ss_pred EEECCccCCCCCHHHhhcc-eEEEccCCCCCcccHHHHhhcCCCCCCCH-------------------------------
Q 040875 744 VKIDGEDIRSYHLRSLRRH-VALVSQEPALFAVTVRENITYGASDKIDE------------------------------- 791 (930)
Q Consensus 744 I~idG~di~~~~~~~lR~~-i~~V~Q~p~LF~gTIreNl~~g~~~~~~d------------------------------- 791 (930)
+++||.+++..++.++++. +.+++|++.++-++..++..+-+. ....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999987778888777 899999998887776655443211 1100
Q ss_pred -----------------------------------HHHHHHHHHhcchhH--Hhc-------Ccccccc---ccCCCCCC
Q 040875 792 -----------------------------------SEIIEAAKAANAHDF--IAG-------LSEGYDT---WCGDRGLQ 824 (930)
Q Consensus 792 -----------------------------------~ei~~al~~~~l~~~--i~~-------Lp~gldt---~vge~G~~ 824 (930)
+++.+.++..++.+. ... -+.|++. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 011111111111100 000 0112222 23344433
Q ss_pred --------CChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEE
Q 040875 825 --------LSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 825 --------LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
||||||||++|||+|+.+| ++|||||||++||+++...+.+.|++..+|+|||+|||+++.+..||+|++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998889999999999999888999999
Q ss_pred E----eCCEEEEec
Q 040875 895 L----EQGRVVEEG 904 (930)
Q Consensus 895 l----~~G~ive~G 904 (930)
| ++|+++...
T Consensus 368 l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 368 VEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEeccCCceEEEE
Confidence 9 999987653
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-34 Score=325.86 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=152.2
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-E-EEECCccCCCCCHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-V-VKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~-I~idG~di~~~~~~~lR~~ 762 (930)
++++||+++| .++||++++||+++|+||||||||||+++|+|+++|++| + |++|| +.|+.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~ 180 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQP 180 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSC
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCC
Confidence 4555555555 378999999999999999999999999999999999999 9 99999 24788
Q ss_pred eEEEccCCCCCc----ccHHHHhhcCCCC---CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 763 VALVSQEPALFA----VTVRENITYGASD---KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 763 i~~V~Q~p~LF~----gTIreNl~~g~~~---~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
++++||++.+|. .|++||+ ++... ...++++.++++.++ ++.... +.+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHHHH
Confidence 999999996543 5899999 65321 011122223333333 333322 67899999999999
Q ss_pred HHH--hccCCCE----EEeec-cCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCch------hhh-ccCE-----EEEEe
Q 040875 836 ARA--ILKNPAV----LLLDE-ATSALDSQSEKLVQEALERLMVGRTSVVVAHRLS------TIQ-NCDM-----IAVLE 896 (930)
Q Consensus 836 ARA--Ll~~~~I----LiLDE-aTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~------ti~-~~Dr-----I~vl~ 896 (930)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++. +.|+|+|+|+.+ .+. .||| |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777777664 789999999988 554 4999 99999
Q ss_pred -CCEEEEecChhHHhc
Q 040875 897 -QGRVVEEGSHESLLA 911 (930)
Q Consensus 897 -~G~ive~G~~~eLl~ 911 (930)
+|+|+ .|+++++.+
T Consensus 324 k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 324 KLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCTTCC-CCCHHHHHH
T ss_pred CCCcEE-ECCHHHHhh
Confidence 99999 999998854
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=8.1e-30 Score=308.12 Aligned_cols=209 Identities=24% Similarity=0.344 Sum_probs=152.9
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-c----ccC---CCCcE-----------
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE-R----FYD---PLKGV----------- 743 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~-r----l~~---~~~G~----------- 743 (930)
..++++|++. .+|+||||+|++||++||+|+||||||||++.++ + .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 4699999851 2689999999999999999999999999999853 2 222 12343
Q ss_pred --EEECCccCCCCC---H-------HHhh---------cceEEEccCCCC---------------------C--------
Q 040875 744 --VKIDGEDIRSYH---L-------RSLR---------RHVALVSQEPAL---------------------F-------- 773 (930)
Q Consensus 744 --I~idG~di~~~~---~-------~~lR---------~~i~~V~Q~p~L---------------------F-------- 773 (930)
|.+||.++..-+ . +..| +..+|+||...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 566776664221 1 1122 345777775321 1
Q ss_pred --------------------------cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCcccccc-ccCCCCCCCC
Q 040875 774 --------------------------AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDT-WCGDRGLQLS 826 (930)
Q Consensus 774 --------------------------~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt-~vge~G~~LS 826 (930)
.-|+.+|+.+... ....++..++++.++| .. ..+..+.+||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~~~~~~~~~~L~~lgL-----------~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-IAGVHRYLRTLVDVGL-----------GYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-CHHHHHHHHHHHHTTG-----------GGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-chHHHHHHHHHHHcCC-----------CcccccCccccCC
Confidence 1134444443321 0011222334444433 33 3456778999
Q ss_pred hHHHHHHHHHHHhccCC---CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------e
Q 040875 827 GGQKQRIAIARAILKNP---AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------E 896 (930)
Q Consensus 827 gGQrQrlaLARALl~~~---~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~ 896 (930)
||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..||||++| +
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999999875 9999999999999999999999998874 599999999999999889999999 6
Q ss_pred CCEEEEecChhHHhc
Q 040875 897 QGRVVEEGSHESLLA 911 (930)
Q Consensus 897 ~G~ive~G~~~eLl~ 911 (930)
+|+|++.|+|+++++
T Consensus 946 ~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAA 960 (993)
T ss_dssp CSEEEEEECHHHHHH
T ss_pred CCEEEEecCHHHHHh
Confidence 899999999999987
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=8.8e-28 Score=264.73 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=146.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc-----------------------------------------------
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERF----------------------------------------------- 736 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl----------------------------------------------- 736 (930)
+++++++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 9999999999999999999843
Q ss_pred ---cCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCC-cccHHHHhhcCCCCC--C------------CHHHHHHHH
Q 040875 737 ---YDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALF-AVTVRENITYGASDK--I------------DESEIIEAA 798 (930)
Q Consensus 737 ---~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF-~gTIreNl~~g~~~~--~------------~d~ei~~al 798 (930)
+.+.+|++++||.+++..++.+++..+++.||+..++ .|++.+|+...+.+. . +.+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344679999999986666777777899999998766 899999997654210 0 001122221
Q ss_pred HHh------------cch-hHHhcCccccccccC------CCCCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCC
Q 040875 799 KAA------------NAH-DFIAGLSEGYDTWCG------DRGLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSAL 855 (930)
Q Consensus 799 ~~~------------~l~-~~i~~Lp~gldt~vg------e~G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaL 855 (930)
+.. .+. +....++.|+++.++ ..+.+||||||||++|||||+ ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111 000 011235556766543 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEE--EEEeCCEE-EEecChhHH
Q 040875 856 DSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMI--AVLEQGRV-VEEGSHESL 909 (930)
Q Consensus 856 D~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI--~vl~~G~i-ve~G~~~eL 909 (930)
|+.+.+.+.+.|++..+++|+|+|||+++.+..||++ ++|++|+. +...+.++.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999887789999999999887889987 88888864 344444443
No 74
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=2.4e-29 Score=257.61 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=103.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
..+|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++||||+| +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 333331 2235688999999998 56
Q ss_pred Hh-hcCCC------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccC
Q 040875 780 NI-TYGAS------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEAT 852 (930)
Q Consensus 780 Nl-~~g~~------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaT 852 (930)
|+ .+..+ ...+.+++.++++. |+ |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l~~------------gl-------------Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLMEA------------GI-------------VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHHHT------------TS-------------EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHh------------CC-------------chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 66 33210 00111122222211 11 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEE
Q 040875 853 SALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 853 SaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
|+ +...+.+.|++..+|+|+| |||+++.+. ++...++|..
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 99 7888999998874588999 999988654 4555666653
No 75
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=1.8e-25 Score=249.56 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=76.3
Q ss_pred CCCCCCChHHHHHHHHHHHhc------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEE
Q 040875 820 DRGLQLSGGQKQRIAIARAIL------KNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMI 892 (930)
Q Consensus 820 e~G~~LSgGQrQrlaLARALl------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI 892 (930)
....+||||||||++|||||+ .+|++|||||||++||+++...+.+.|++.. +|+|||+|||+++.+..||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345689999999999999999 7999999999999999999999999998875 589999999999998889999
Q ss_pred EEEeCCEEEE
Q 040875 893 AVLEQGRVVE 902 (930)
Q Consensus 893 ~vl~~G~ive 902 (930)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.92 E-value=6e-29 Score=258.11 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=123.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH-HHhhcceEEEccCCCCCc------
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL-RSLRRHVALVSQEPALFA------ 774 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i~~V~Q~p~LF~------ 774 (930)
-|+||||+|++|+++||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|+||+|.+|.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 5 99999 888765432 345788999999986664
Q ss_pred -----ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH-----HHHhccCCC
Q 040875 775 -----VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI-----ARAILKNPA 844 (930)
Q Consensus 775 -----gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL-----ARALl~~~~ 844 (930)
+++++| .+| .++++++++++..... .+ +.+||||||||++| ||+++++|+
T Consensus 88 ~~l~~~~~~~~-~~g----~~~~~i~~~l~~~~~~------------il---~~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 88 DFLEYDNYANN-FYG----TLKSEYDKAKEQNKIC------------LF---EMNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp CEEEEEEETTE-EEE----EEHHHHHHHHHTTCEE------------EE---EECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred chhhhhhcccc-cCC----CcHHHHHHHHhCCCcE------------EE---EecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 344444 233 2345666666653321 11 15799999999999 999999999
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeC
Q 040875 845 VLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQ 897 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 897 (930)
+++|||||+++|.+++..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988777777 788 577999988764
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=1.4e-26 Score=230.89 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=108.1
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC--CCcccHHHHhh
Q 040875 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA--LFAVTVRENIT 782 (930)
Q Consensus 705 ~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~--LF~gTIreNl~ 782 (930)
|+||++++||.++|+|+||||||||++++++ |...+ +.+.+| ++++|+|. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 233344 67788872 33333333321
Q ss_pred cCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHH--
Q 040875 783 YGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSE-- 860 (930)
Q Consensus 783 ~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te-- 860 (930)
...+ ..+..|+.+.+.. ....|+|||||++||||+..+|++|+|||||++||+.++
T Consensus 64 -------------~~~~--------~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 -------------YIVS--------KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp -------------HHHH--------HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred -------------HHHH--------HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1100 1122344444433 345699999999999999999999999999999999954
Q ss_pred --------------HHHHHHHHHHc-CCCeEEEEccCchhhhccCEE
Q 040875 861 --------------KLVQEALERLM-VGRTSVVVAHRLSTIQNCDMI 892 (930)
Q Consensus 861 --------------~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI 892 (930)
+.+.+.|++.. +|.|+|+|||+++.+..++++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 67777776553 489999999999999887765
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.1e-25 Score=224.89 Aligned_cols=148 Identities=13% Similarity=0.158 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEI 794 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei 794 (930)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. +.. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-F------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-T------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-c------
Confidence 689999999999999999999995 677887765443225678999999998 3334431 100 0
Q ss_pred HHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH-----hccCCCEEEeec--cCCCCCHHHHHHHHHHH
Q 040875 795 IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA-----ILKNPAVLLLDE--ATSALDSQSEKLVQEAL 867 (930)
Q Consensus 795 ~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA-----Ll~~~~ILiLDE--aTSaLD~~te~~i~~~i 867 (930)
.+ -+..++..+.+||||||||++|||| ++.+|++++||| ||+++|+.+.+.+.+.+
T Consensus 64 ---------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 64 ---------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ---------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ---------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00 0134566778999999999999996 999999999999 99999999999999988
Q ss_pred HHHcCCCeEEEEcc---Cchhhhc-cCEEEEEeCCEEEEe
Q 040875 868 ERLMVGRTSVVVAH---RLSTIQN-CDMIAVLEQGRVVEE 903 (930)
Q Consensus 868 ~~~~~~~TvI~IaH---rl~ti~~-~DrI~vl~~G~ive~ 903 (930)
++ .+.|+|+++| +.+.+.. ||| .+|+|++.
T Consensus 127 ~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 127 HD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp TC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred hc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 76 4777899885 7777765 777 66788774
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.91 E-value=1e-26 Score=255.72 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=117.1
Q ss_pred EEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEE
Q 040875 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766 (930)
Q Consensus 687 ~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V 766 (930)
|+|++| | .++++++|+++++|+.++|+|+||||||||+++|.|+++|++|.|.++|.+ ++....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 555555 5 237899999999999999999999999999999999999999999999976 33333345555554
Q ss_pred ccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 040875 767 SQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVL 846 (930)
Q Consensus 767 ~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~IL 846 (930)
+| |||+||++|||||.++|+++
T Consensus 223 ~g----------------------------------------------------------gg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 223 FG----------------------------------------------------------GNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp CB----------------------------------------------------------TTBCHHHHHHHHTTSCCSEE
T ss_pred eC----------------------------------------------------------CChhHHHHHHHHhhhCCCEE
Confidence 30 89999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHcCCC-eEEEEccCchhhhccCEEEEEeCCEE
Q 040875 847 LLDEATSALDSQSEKLVQEALERLMVGR-TSVVVAHRLSTIQNCDMIAVLEQGRV 900 (930)
Q Consensus 847 iLDEaTSaLD~~te~~i~~~i~~~~~~~-TvI~IaHrl~ti~~~DrI~vl~~G~i 900 (930)
+|||||+. .+.+.++....|+ |+|+++|+++....||||++|++|+.
T Consensus 245 ildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 245 ILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99999982 2456666666665 79999999998888999999998853
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.89 E-value=4.7e-26 Score=258.81 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=157.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc---cCCCCC----
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE---DIRSYH---- 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~---di~~~~---- 755 (930)
+.++++|+++.|+. +..+|+++ |+|++||+++|+|+||||||||+++|.|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999963 34699999 999999999999999999999999999999999999999998 665432
Q ss_pred -HHHhhcceEEEccC--CCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 756 -LRSLRRHVALVSQE--PALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 756 -~~~lR~~i~~V~Q~--p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
...+++.+++++|+ |.+..-|+.+|+.+. .+.... +.....++ + +...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-------ae~~~~-~~~~v~~~-------l-----d~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI-------AEDFRD-RGQHVLLI-------M-----DSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-------HHHHHT-TTCEEEEE-------E-----ECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH-------HHHHHh-CCCCHHHH-------H-----HhHHHHHHHH-HH
Confidence 35688999999995 344566888888653 111110 00111111 1 2356899999 99
Q ss_pred HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEccCchhhhccCEEEEEeCCEEEE
Q 040875 833 IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMV-----GR-----TSVVVAHRLSTIQNCDMIAVLEQGRVVE 902 (930)
Q Consensus 833 laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-----~~-----TvI~IaHrl~ti~~~DrI~vl~~G~ive 902 (930)
++|| +.+|++ |+++|+.+...+++.+++..+ |+ ||+++||+++ ...||++++|.+|+|++
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988754 54 9999999999 66799999999999999
Q ss_pred ecChhHHhc
Q 040875 903 EGSHESLLA 911 (930)
Q Consensus 903 ~G~~~eLl~ 911 (930)
.|+++++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999998864
No 81
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=6.9e-26 Score=253.87 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=135.9
Q ss_pred ccceeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHh
Q 040875 700 VIIFKGFSINIEAEK--------------------STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge--------------------~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l 759 (930)
..+|+|||+++++|| .+||+||||||||||+++|.|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH--HHHHHHHHH
Q 040875 760 RRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG--QKQRIAIAR 837 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG--QrQrlaLAR 837 (930)
| .++++|+|....-|++||+.++.+ ++++.+.++..++.+. +..+ . +|+| ||||++|||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAK 169 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHH
Confidence 2 278999986557899999976532 2346777888876542 2221 2 8999 999999999
Q ss_pred Hhcc----------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEccCchh--hhc-cCEEE
Q 040875 838 AILK----------NPAVLLLDEATSALDSQSEKLVQEALERLM------V----GRTSVVVAHRLST--IQN-CDMIA 893 (930)
Q Consensus 838 ALl~----------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~------~----~~TvI~IaHrl~t--i~~-~DrI~ 893 (930)
||.+ +|++++|||||++||+.+.+.+.+.|++.. . ..++++-||.++- +.. ||+|.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999 999999999999999999998888887762 1 2567788999886 654 78774
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=1e-22 Score=245.83 Aligned_cols=100 Identities=28% Similarity=0.402 Sum_probs=89.3
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEE
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
.+....+|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++. .|.|||+|+||++.+..||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 35556799999999999999999999 5999999999999999999999998875 48999999999999888999999
Q ss_pred E------eCCEEEEecChhHHhccCCCcHH
Q 040875 895 L------EQGRVVEEGSHESLLAKGPAGAY 918 (930)
Q Consensus 895 l------~~G~ive~G~~~eLl~~~~~g~y 918 (930)
| ++|+++..|+|+++++. ++...
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~-~~~~~ 481 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHV-PESQT 481 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGC-TTCHH
T ss_pred eCCCcccCCCEEEEecCHHHHHhc-hHHHH
Confidence 9 79999999999999873 34443
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=6.5e-24 Score=229.92 Aligned_cols=175 Identities=17% Similarity=0.229 Sum_probs=127.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHh--hcceEEEccCCC-CC-cc
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSL--RRHVALVSQEPA-LF-AV 775 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~p~-LF-~g 775 (930)
+++||++++|+.++|||+|||||||+++.|.|+++|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999987653 2334 457999999997 65 45
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCC
Q 040875 776 TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATS 853 (930)
Q Consensus 776 TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTS 853 (930)
|+++|+.++.....+ . ..++.+++.+. .......|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d-~---~lldt~gl~~~-----------~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD-V---VLCDTSGRLHT-----------NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS-E---EEECCCCCSSC-----------CHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc-c---hHHhcCCCCcc-----------hhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 899999754211111 0 11122222111 111223588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEcc---------Cchhhhc-cCEEEEEeCCEEE
Q 040875 854 ALDSQSEKLVQEALERLMVGRTSVVVAH---------RLSTIQN-CDMIAVLEQGRVV 901 (930)
Q Consensus 854 aLD~~te~~i~~~i~~~~~~~TvI~IaH---------rl~ti~~-~DrI~vl~~G~iv 901 (930)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998652 22222 23899999999 4445543 6899999999753
No 84
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=8.8e-24 Score=225.52 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc-cHHHHhhcCCCCC--CCH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV-TVRENITYGASDK--IDE 791 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~~~~--~~d 791 (930)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456889999999988765 9999998875311 112
Q ss_pred HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 792 SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 792 ~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
+.+.+.++ .++-..++ ..||||||||+++|||++. +++|||||++||+... .+.+.++
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---
Confidence 23333333 33333222 2699999999999999885 9999999999998763 3334443
Q ss_pred CCCeEEEEccCchhhh
Q 040875 872 VGRTSVVVAHRLSTIQ 887 (930)
Q Consensus 872 ~~~TvI~IaHrl~ti~ 887 (930)
+.+++|+|.|+.+++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3389999999988764
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.85 E-value=3.4e-24 Score=233.21 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=133.1
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSIN-----------------------IEAEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~-----------------------i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
.+.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45799999999993 467777765 89999999999999999999999999999
Q ss_pred CCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCC----CCCCCHHHHHHHHHHhcchhHHhcCcccc
Q 040875 739 PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGA----SDKIDESEIIEAAKAANAHDFIAGLSEGY 814 (930)
Q Consensus 739 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~----~~~~~d~ei~~al~~~~l~~~i~~Lp~gl 814 (930)
|..|. +++++|+||+.++..|+++|+.+.. +...+.+.+.+.++..+ .|.
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~~ 169 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SGS 169 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TTC
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CCc
Confidence 97663 5699999999999999999997532 22234455555555443 233
Q ss_pred c-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhh--ccCE
Q 040875 815 D-TWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQ--NCDM 891 (930)
Q Consensus 815 d-t~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~--~~Dr 891 (930)
. .. ...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|.|..+... ..+|
T Consensus 170 ~~~~----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 170 DYAC----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp SCEE----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHH
T ss_pred ccCC----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHH
Confidence 2 22 34799999999999999999999999999999998622 1233333 3 4577888887653 3667
Q ss_pred EEEEeCCE
Q 040875 892 IAVLEQGR 899 (930)
Q Consensus 892 I~vl~~G~ 899 (930)
.+.+.+|+
T Consensus 239 ~~~~rd~~ 246 (312)
T 3aez_A 239 FLAMRTTA 246 (312)
T ss_dssp HHHHTTTG
T ss_pred HHHHHhcc
Confidence 66665543
No 86
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=1.5e-21 Score=215.60 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEE
Q 040875 824 QLSGGQKQRIAIARAIL---------KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl---------~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
.||||||||++|||+|+ .+|+||+||||||+||+...+.+.+.|++.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 89999999 454 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 040875 895 LEQGRVVEEGSHESLL 910 (930)
Q Consensus 895 l~~G~ive~G~~~eLl 910 (930)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=4.6e-25 Score=234.24 Aligned_cols=176 Identities=19% Similarity=0.172 Sum_probs=147.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECCccCCCCCHHHhhcceEEEcc-----CCCCCc
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGEDIRSYHLRSLRRHVALVSQ-----EPALFA 774 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----~p~LF~ 774 (930)
++|+|+| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.|+..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 3899999 9999999999999999999999999999998 999999999886543 455678899 677788
Q ss_pred ccHHHHhhcCCC----CCC-CHHHHHHHHHHhcch----------------hHH-------------hcCccccccccCC
Q 040875 775 VTVRENITYGAS----DKI-DESEIIEAAKAANAH----------------DFI-------------AGLSEGYDTWCGD 820 (930)
Q Consensus 775 gTIreNl~~g~~----~~~-~d~ei~~al~~~~l~----------------~~i-------------~~Lp~gldt~vge 820 (930)
.+|+.++..+|+ ++. |.+.++++++.+.-. +.+ ..+++++++.|++
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~q 168 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 168 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEEE
Confidence 999999988653 122 666677776654311 111 1356789999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCE--EEeeccCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEccCch
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAV--LLLDEATSALDSQS---------EKLVQEALERLMVGRTSVVVAHRLS 884 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~I--LiLDEaTSaLD~~t---------e~~i~~~i~~~~~~~TvI~IaHrl~ 884 (930)
++..+|+| ||+++||+++.+|+| +|+||+|+++|... +..++++++...+|+|.+.++||++
T Consensus 169 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 169 RLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 99999999 899999999999999 99999999999873 4578999998899999999999986
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=5.9e-23 Score=226.14 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=128.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHh--hcceEEEccCCC-CC-cc
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSL--RRHVALVSQEPA-LF-AV 775 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~p~-LF-~g 775 (930)
+.+||++++|+.++|||+|||||||+++.|.|+++|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3567889999999999999999999999999999999999999999987643 2333 568999999997 55 56
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCC
Q 040875 776 TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATS 853 (930)
Q Consensus 776 TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTS 853 (930)
|+++|+.++.....+ . ..++.+++.+. .......|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d-~---~lldt~Gl~~~-----------~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD-V---VLCDTSGRLHT-----------NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS-E---EEEECCCCSSC-----------CHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH-H---HHHHhcCCChh-----------hhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 899999764211111 0 11122222111 111123588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEcc---------Cchhhhc-cCEEEEEeCCEE
Q 040875 854 ALDSQSEKLVQEALERLMVGRTSVVVAH---------RLSTIQN-CDMIAVLEQGRV 900 (930)
Q Consensus 854 aLD~~te~~i~~~i~~~~~~~TvI~IaH---------rl~ti~~-~DrI~vl~~G~i 900 (930)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.
T Consensus 289 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99998653 22222 23899999999 3455543 689999999964
No 89
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.84 E-value=5.3e-24 Score=210.49 Aligned_cols=111 Identities=22% Similarity=0.195 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccCCCCC---HHHhh-cceE----EEccCCCCCcccHHHHhh
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGEDIRSYH---LRSLR-RHVA----LVSQEPALFAVTVRENIT 782 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Q~p~LF~gTIreNl~ 782 (930)
++++|||+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 67888 5788 899999988 222
Q ss_pred cCCCCCCCHHHHHHHHHHhcchhHHhc-CccccccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 040875 783 YGASDKIDESEIIEAAKAANAHDFIAG-LSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVL 846 (930)
Q Consensus 783 ~g~~~~~~d~ei~~al~~~~l~~~i~~-Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~IL 846 (930)
+ + ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|+|.
T Consensus 77 -~-----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 7899999999 99 999999995 9999999999999999999874
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.84 E-value=2.1e-24 Score=241.24 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=148.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECCccCCCCCHHHhhcceEEEcc-----CCCCCc
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGEDIRSYHLRSLRRHVALVSQ-----EPALFA 774 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----~p~LF~ 774 (930)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|+++++|+| +|..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3567766 8999999999999999999999999999998 899988887764 2 46788999999 899999
Q ss_pred ccHHHHhhcCCC----CCC-CHHHHHHHHHHhcchhH----------------H-------------hcCccccccccCC
Q 040875 775 VTVRENITYGAS----DKI-DESEIIEAAKAANAHDF----------------I-------------AGLSEGYDTWCGD 820 (930)
Q Consensus 775 gTIreNl~~g~~----~~~-~d~ei~~al~~~~l~~~----------------i-------------~~Lp~gldt~vge 820 (930)
++|++||+.+|. ++. +++.++.+++.++.... + ..+++++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999998653 112 67778888887754211 1 1257789999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCE--EEeeccCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEccCchh
Q 040875 821 RGLQLSGGQKQRIAIARAILKNPAV--LLLDEATSALDSQ----S-----EKLVQEALERLMVGRTSVVVAHRLST 885 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl~~~~I--LiLDEaTSaLD~~----t-----e~~i~~~i~~~~~~~TvI~IaHrl~t 885 (930)
++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.++||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 98899999 899999999999999 9999999999975 3 45688889888899999999999974
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=1.8e-23 Score=215.30 Aligned_cols=169 Identities=16% Similarity=0.095 Sum_probs=110.3
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-ccHH
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVR 778 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIr 778 (930)
.++++| .+|++||++||+||||||||||+++|.|+++ .|.+++.....-+....|+.++|+||+|.+|. -|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 358888 7999999999999999999999999999996 35555422221111234678999999997775 3455
Q ss_pred HHhhc-----C--CCCCCCHHHHHHHH----------HHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 779 ENITY-----G--ASDKIDESEIIEAA----------KAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 779 eNl~~-----g--~~~~~~d~ei~~al----------~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+|+.. + .....+.+++.+.+ +.+++.++....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 55521 1 00011233443333 3334433333222 2445 9999
Q ss_pred CCCEEEeeccCCCC----CHHHHHHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEe
Q 040875 842 NPAVLLLDEATSAL----DSQSEKLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLE 896 (930)
Q Consensus 842 ~~~ILiLDEaTSaL----D~~te~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~ 896 (930)
+|++++|||||+++ |+.+.+.+.+.+++.. .++|+|+|||+++.+.. ||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778888888888774 38999999999999865 99999984
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.82 E-value=1.5e-22 Score=203.88 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=129.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHH
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDES 792 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ 792 (930)
||+++|+|+||||||||++.|.|+++ ++| |.+||.++.++ ..+++++++++|+. .|+ ++|+..-.. ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~---~g~-~~~l~~~~~-~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL---SGT-RGPLSRVGL-EPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET---TSC-EEEEEECCC-CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec---ccc-eehhhcccc-cCC--
Confidence 79999999999999999999999999 899 99999998654 35789999999997 443 344421100 000
Q ss_pred HHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH-HHHH---HhccCCCEEEeec--cCCCCCHHHHHHHHHH
Q 040875 793 EIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI-AIAR---AILKNPAVLLLDE--ATSALDSQSEKLVQEA 866 (930)
Q Consensus 793 ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl-aLAR---ALl~~~~ILiLDE--aTSaLD~~te~~i~~~ 866 (930)
+...+.++++.+..+|+|||+++ +++| |+..+|+|||||| ||...|.+..+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 01123478888999999999999 5566 7899999999999 8888999887777777
Q ss_pred HHHHcCCCeEE----EEccCchhhhccCEEEEEeCCEEEEecChhHHhccCCCcHHHHHHH
Q 040875 867 LERLMVGRTSV----VVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLAKGPAGAYYSLVS 923 (930)
Q Consensus 867 i~~~~~~~TvI----~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~~g~y~~l~~ 923 (930)
+++ ..|+| +|+||.+ ....|||..+++|+|++... .|++..+.++++
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~------~nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK------ENRNHLLPDIVT 182 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS------SSGGGHHHHHHH
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh------HhHHHHHHHHHH
Confidence 653 34555 3449986 45578888899999998653 235555666554
No 93
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.82 E-value=2.5e-23 Score=212.39 Aligned_cols=167 Identities=14% Similarity=0.207 Sum_probs=131.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccC-------------CCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccH
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTV 777 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTI 777 (930)
++|++++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|.+|+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 6899999999999999999999999986 78898 699999999999999876 89999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH-HhccCCCEEEeeccCCCCC
Q 040875 778 RENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR-AILKNPAVLLLDEATSALD 856 (930)
Q Consensus 778 reNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR-ALl~~~~ILiLDEaTSaLD 856 (930)
++|+ || .++++++++++.....-+ +-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 77 ~~n~-~g----~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 77 SGNL-YG----TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp TTEE-EE----EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred cCcc-CC----CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 9998 65 267889999876432211 2246677765421 12 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHh
Q 040875 857 SQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 857 ~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
.++++.|++.|.+..++ +.++| ++ ..+|+|+|+++ ...+.++|.
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~ 182 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLK 182 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHH
Confidence 99999999999877554 36788 45 78999999875 234445544
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=1.3e-21 Score=215.79 Aligned_cols=195 Identities=17% Similarity=0.185 Sum_probs=149.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC-------CC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS-------YH 755 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~-------~~ 755 (930)
..++.+|++..|+. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 45889999999963 34689999 9999999999999999999999999999999999999999975321 12
Q ss_pred HHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccc-cCCCCCCCChHHHHHHH
Q 040875 756 LRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTW-CGDRGLQLSGGQKQRIA 834 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~-vge~G~~LSgGQrQrla 834 (930)
...+++.+.+++|.+. ...+++..++....+.++... .|.+.. +-+...+||+|| ||++
T Consensus 121 ~~~~~~~v~~~~~~~~-----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR-----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHHTTEEEEEECTTS-----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhhceEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 2334555666665321 112445555555555555432 232211 113467899999 9999
Q ss_pred HHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEccCchhhhccCEEEEEeCCEEEEecCh
Q 040875 835 IARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM---VGR-----TSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSH 906 (930)
Q Consensus 835 LARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~---~~~-----TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 906 (930)
+| +.+|++ |+++|+.....+.+.+++.. +|. ||+++||+++ -.-||++++|.+|+|+..|++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCH
Confidence 99 688888 99999999999999998875 366 9999999999 455999999999999999998
Q ss_pred hHHh
Q 040875 907 ESLL 910 (930)
Q Consensus 907 ~eLl 910 (930)
+++.
T Consensus 251 ~~~~ 254 (347)
T 2obl_A 251 AEEN 254 (347)
T ss_dssp HTTT
T ss_pred HHcC
Confidence 8874
No 95
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=5.8e-20 Score=223.81 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=116.8
Q ss_pred HHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcC
Q 040875 731 GLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGL 810 (930)
Q Consensus 731 ~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~L 810 (930)
.+.-+.+.|..|+|.++|.+|.++....+.+.++++.+ +.+...+..--.++.+..+.. .+++..+
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~~~--~~~L~~v 451 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIEKR--LEFLVDV 451 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHHHH--HHHHHTT
T ss_pred hcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHHHH--HHHHHHc
Confidence 33345567899999999998865443333333333221 111111000111111111110 1223322
Q ss_pred ccccccc-cCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhh
Q 040875 811 SEGYDTW-CGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTI 886 (930)
Q Consensus 811 p~gldt~-vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti 886 (930)
|++.. ......+||||||||++|||||.++|+ +|||||||++||++....+.+.|+++. +|.|||+|+|+++.+
T Consensus 452 --gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~ 529 (916)
T 3pih_A 452 --GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529 (916)
T ss_dssp --TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH
T ss_pred --CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33321 345567899999999999999999887 999999999999999999999999875 489999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhHHhcc
Q 040875 887 QNCDMIAVL------EQGRVVEEGSHESLLAK 912 (930)
Q Consensus 887 ~~~DrI~vl------~~G~ive~G~~~eLl~~ 912 (930)
..||+|++| ++|+|++.|+|++++++
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 899999999 89999999999999974
No 96
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.80 E-value=1.7e-19 Score=211.52 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCC-ChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCC
Q 040875 823 LQL-SGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898 (930)
Q Consensus 823 ~~L-SgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 898 (930)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999887799999999999998889999999554
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.2e-21 Score=230.20 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=121.8
Q ss_pred CccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc
Q 040875 699 DVIIFKGFSI-NIEAEKSTALVGQSGSGKSTIIGL--IERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV 775 (930)
Q Consensus 699 ~~~vL~~vsl-~i~~Ge~vaIVG~sGsGKSTL~~l--L~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g 775 (930)
..++|+|+|+ .|++||.++|+|+||||||||++. +.|+++|.+|.|+++|.+. .......++++++++|+|...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3468999999 999999999999999999999999 7899999999999999983 334455678899999998531
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCC-
Q 040875 776 TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSA- 854 (930)
Q Consensus 776 TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSa- 854 (930)
+|+.+-.... +++.+++++..++.+.....+ ..||+|| |++++|||||+.
T Consensus 101 ---~~l~~~~~~~--~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g~-------------~~~lilDe~t~~~ 151 (525)
T 1tf7_A 101 ---GKLFILDASP--DPEGQEVVGGFDLSALIERIN-----------YAIQKYR-------------ARRVSIDSVTSVF 151 (525)
T ss_dssp ---TSEEEEECCC--CSSCCSCCSSHHHHHHHHHHH-----------HHHHHHT-------------CSEEEEECSTTTS
T ss_pred ---CcEEEEecCc--ccchhhhhcccCHHHHHHHHH-----------HHHHHcC-------------CCEEEECCHHHHH
Confidence 1221110000 001112233333333322221 2456654 779999999984
Q ss_pred ----CCHHHHHHHHHHHHHHc-CCCeEEEEccCchhh---------hc-cCEEEEEeC
Q 040875 855 ----LDSQSEKLVQEALERLM-VGRTSVVVAHRLSTI---------QN-CDMIAVLEQ 897 (930)
Q Consensus 855 ----LD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti---------~~-~DrI~vl~~ 897 (930)
+|+...+.+.+.++++. .|+|+|+|+|+++.+ .. ||+|++|++
T Consensus 152 ~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 152 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 58888889999888764 499999999999874 44 999999998
No 98
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.79 E-value=4.3e-20 Score=201.25 Aligned_cols=181 Identities=14% Similarity=0.114 Sum_probs=124.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-EEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
++|+++++.+++|+.++|+||||||||||++.|++...|.+| +|.+.+.+ .+..++++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 78665443 3566777776666665432 2234
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH-HHHHHHHHHhccCCCEEEeeccCC---C-
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ-KQRIAIARAILKNPAVLLLDEATS---A- 854 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ-rQrlaLARALl~~~~ILiLDEaTS---a- 854 (930)
|+..+ ..++++..++.+. .+...+-+ +.+.+.++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 44322 1223333333322 12211111 223345789999 67777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHc--CCCeEEEEccCc--h--------------------hhh-ccCEEEEEeCCEE
Q 040875 855 --LDS-QSEKLVQEALERLM--VGRTSVVVAHRL--S--------------------TIQ-NCDMIAVLEQGRV 900 (930)
Q Consensus 855 --LD~-~te~~i~~~i~~~~--~~~TvI~IaHrl--~--------------------ti~-~~DrI~vl~~G~i 900 (930)
+|. .....+.+.|++.. .|+|||+++|.. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 44456777777764 289999999995 4 554 5999999999875
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.78 E-value=1.8e-21 Score=201.10 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=112.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc---cHHHHhhc--
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV---TVRENITY-- 783 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g---TIreNl~~-- 783 (930)
..++|+++||+|+||||||||+++|.|++.| ++++|+||+.++.. |+++|+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3578999999999999999999999999875 58999999998854 56666544
Q ss_pred CCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH----HHHHHHHHHhccCCCEEEeeccCCC-----
Q 040875 784 GASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ----KQRIAIARAILKNPAVLLLDEATSA----- 854 (930)
Q Consensus 784 g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ----rQrlaLARALl~~~~ILiLDEaTSa----- 854 (930)
+.+...+.+++.++++..++.+.+.. | +..+|+|| +||+++||+++.+|+++++||||++
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 33334566788888888776654432 2 34566664 6899999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHH--cCCCeEEEEccCc
Q 040875 855 --LDSQSEKLVQEALERL--MVGRTSVVVAHRL 883 (930)
Q Consensus 855 --LD~~te~~i~~~i~~~--~~~~TvI~IaHrl 883 (930)
||+.++..+++.+++. .+|+|++.++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988764 3589999999984
No 100
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.78 E-value=1.1e-18 Score=193.41 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=67.8
Q ss_pred CCCCChHHHH------HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEE
Q 040875 822 GLQLSGGQKQ------RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAV 894 (930)
Q Consensus 822 G~~LSgGQrQ------rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 894 (930)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. +++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 6788899999999999999999999999999999998864 47899999999887777999999
Q ss_pred Ee
Q 040875 895 LE 896 (930)
Q Consensus 895 l~ 896 (930)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 101
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=2.6e-19 Score=215.91 Aligned_cols=151 Identities=25% Similarity=0.365 Sum_probs=111.9
Q ss_pred CCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHH-------HHHHHHHHhcchhHHhcC
Q 040875 738 DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDES-------EIIEAAKAANAHDFIAGL 810 (930)
Q Consensus 738 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~-------ei~~al~~~~l~~~i~~L 810 (930)
.|....+.|+|.+|.+ +..-||.|++.|...-..+++ -+.+..++. +++..+
T Consensus 433 ~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v 491 (972)
T 2r6f_A 433 KKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV 491 (972)
T ss_dssp CTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH
T ss_pred CHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC
Confidence 3556678888877643 345677777776321122331 111222221 112221
Q ss_pred ccccccc-cCCCCCCCChHHHHHHHHHHHhccCC--CEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhh
Q 040875 811 SEGYDTW-CGDRGLQLSGGQKQRIAIARAILKNP--AVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTI 886 (930)
Q Consensus 811 p~gldt~-vge~G~~LSgGQrQrlaLARALl~~~--~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti 886 (930)
|++.. ......+|||||||||+||+||..+| ++|||||||++||++.-+.+.+.|+++. .|.|||+|+||++.+
T Consensus 492 --GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 492 --GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 569 (972)
T ss_dssp --TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH
T ss_pred --CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 33321 33456689999999999999999985 9999999999999999999999998876 489999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhHHhc
Q 040875 887 QNCDMIAVL------EQGRVVEEGSHESLLA 911 (930)
Q Consensus 887 ~~~DrI~vl------~~G~ive~G~~~eLl~ 911 (930)
..||+|++| ++|+++..|+|+++++
T Consensus 570 ~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 570 LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 899999999 7999999999999986
No 102
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=4.7e-19 Score=219.87 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=122.9
Q ss_pred ccEEEEE-----EEEEcCCCCCccceeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc
Q 040875 683 GHIELQY-----VHFAYPARPDVIIFKGFSINIEA-------EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED 750 (930)
Q Consensus 683 g~I~~~n-----vsf~Y~~~~~~~vL~~vsl~i~~-------Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d 750 (930)
+.|+++| |++.|++ +..|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999943 34689999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHhhcceE-EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 751 IRSYHLRSLRRHVA-LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 751 i~~~~~~~lR~~i~-~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
+.+++ +|||++. .-|+.|||... .++.|.+. .+-..+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r----------------ig~~d~~~-----------~~~stf~~em 856 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR----------------LGASDRIM-----------SGESTFFVEL 856 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE----------------CC--------------------CHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH----------------cCCHHHHh-----------hchhhhHHHH
Confidence 34566 9999983 55677776311 11111111 1224678777
Q ss_pred HHHHHHHHHhccCCCEEEeeccCCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEccCchhhhc-cCEEEEEeCCEEE--Ee
Q 040875 830 KQRIAIARAILKNPAVLLLDEATSALDSQS-EKLVQEALERLM-V-GRTSVVVAHRLSTIQN-CDMIAVLEQGRVV--EE 903 (930)
Q Consensus 830 rQrlaLARALl~~~~ILiLDEaTSaLD~~t-e~~i~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv--e~ 903 (930)
++ +++||+++.+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||+++.+.. +|++.|+ +|++. +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 65 999999999999999999999999987 455677777764 3 8999999999999875 8999887 58887 56
Q ss_pred cChhH
Q 040875 904 GSHES 908 (930)
Q Consensus 904 G~~~e 908 (930)
|++++
T Consensus 935 ~~~~~ 939 (1022)
T 2o8b_B 935 NECED 939 (1022)
T ss_dssp -----
T ss_pred cCccc
Confidence 65544
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=4.7e-20 Score=194.94 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=109.4
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHH
Q 040875 699 DVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVR 778 (930)
Q Consensus 699 ~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIr 778 (930)
+.++|+|+||++++|+.+||+||||||||||+++|.+++ |.+.+| ..++++++++|++....-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446899999999999999999999999999999999977 555554 467889999999844456899
Q ss_pred HHhhcCCC-------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeecc
Q 040875 779 ENITYGAS-------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEA 851 (930)
Q Consensus 779 eNl~~g~~-------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEa 851 (930)
+|+.+... ...+.+++.+.++. +..+.+.. ...||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCc
Confidence 98764211 11233344444433 22233333 34799999999988 799999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh-hc-cCEEEEEeCCEEEEecChhHHhc
Q 040875 852 TSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI-QN-CDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 852 TSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti-~~-~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
....|.+ +.+. .+.|++++||...-+ +. ++++ ++|+ +++++.+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8877753 2222 388999999974433 43 3434 6675 6777664
No 104
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.76 E-value=9.2e-21 Score=212.53 Aligned_cols=148 Identities=20% Similarity=0.312 Sum_probs=102.4
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHhcccCCCC----cEEEE----CCccCCCCCHHHhhcceEEEccCCC
Q 040875 702 IFKGFSINIEA--EKSTALVGQSGSGKSTIIGLIERFYDPLK----GVVKI----DGEDIRSYHLRSLRRHVALVSQEPA 771 (930)
Q Consensus 702 vL~~vsl~i~~--Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Q~p~ 771 (930)
+.+.|++++++ |++++|+|+||||||||+++|.|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35789999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccc--ccc--------ccCCCCCCCChHHHHHHHHHHHh--
Q 040875 772 LFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEG--YDT--------WCGDRGLQLSGGQKQRIAIARAI-- 839 (930)
Q Consensus 772 LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~g--ldt--------~vge~G~~LSgGQrQrlaLARAL-- 839 (930)
+|.+|+++||.++.. ...+...+..+...+..+++..++.+ ++. +..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 999999999988653 33344455444444444555544433 222 22245556677777777777776
Q ss_pred -cc--CCCEEEeeccC
Q 040875 840 -LK--NPAVLLLDEAT 852 (930)
Q Consensus 840 -l~--~~~ILiLDEaT 852 (930)
++ +++|+++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 55 66777777765
No 105
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.74 E-value=2.4e-18 Score=197.27 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEccCchhhhccCEEEEEe
Q 040875 824 QLSGGQKQRIAIARAIL----KNPAVLLLDEATSALDSQSEKLVQEALERLMV-GRTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
.||||||||++|||+|+ ++|+++|||||||+||+.+...+.+.|++..+ +.|+|+|||+..++..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 789999999998888899999985
No 106
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=2.2e-18 Score=202.32 Aligned_cols=170 Identities=15% Similarity=0.020 Sum_probs=125.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
++.+++++.|++- ..+|+ ..+++|+.++|+|+||||||||++.+++...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 4555666555310 11333 389999999999999999999999999998874 43 1256
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
+++|++. .++++|..-- ..+.++ +...+ +.......+..|||||+||+++||++..+|+
T Consensus 315 ~~~ee~~---~~l~~~~~~~---g~~~~~----~~~~g-----------~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW---GMDFEE----MERQN-----------LLKIVCAYPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp EESSSCH---HHHHHHHHTT---SCCHHH----HHHTT-----------SEEECCCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCH---HHHHHHHHHc---CCCHHH----HHhCC-----------CEEEEEeccccCCHHHHHHHHHHHHHhhCCC
Confidence 7778773 3566665211 122222 11222 2222234567899999999999999999999
Q ss_pred EEEeeccCCCCCHH-----HHHHHHHHHHHHc-CCCeEEEEccCc----------hhhhc-cCEEEEEeCCE
Q 040875 845 VLLLDEATSALDSQ-----SEKLVQEALERLM-VGRTSVVVAHRL----------STIQN-CDMIAVLEQGR 899 (930)
Q Consensus 845 ILiLDEaTSaLD~~-----te~~i~~~i~~~~-~~~TvI~IaHrl----------~ti~~-~DrI~vl~~G~ 899 (930)
+||+| ||++||.. ..+.+.+.++.+. .|+|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999 99999998 8888888887664 589999999999 66665 99999999887
No 107
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=4.6e-18 Score=163.39 Aligned_cols=88 Identities=22% Similarity=0.302 Sum_probs=75.4
Q ss_pred cccccc-----CCCCCCCChHHHHHHHHH------HHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEc
Q 040875 813 GYDTWC-----GDRGLQLSGGQKQRIAIA------RAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVA 880 (930)
Q Consensus 813 gldt~v-----ge~G~~LSgGQrQrlaLA------RALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~Ia 880 (930)
+++..+ ...+.+||||||||++|| |||+.+|++++|||||++||+++.+.+.+.|++.. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566554 234678999999999876 99999999999999999999999999999999874 489999999
Q ss_pred cCchhhhccCEEEEE--eCCEE
Q 040875 881 HRLSTIQNCDMIAVL--EQGRV 900 (930)
Q Consensus 881 Hrl~ti~~~DrI~vl--~~G~i 900 (930)
|+++....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766679999999 56643
No 108
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=5.9e-18 Score=205.00 Aligned_cols=139 Identities=26% Similarity=0.406 Sum_probs=106.7
Q ss_pred CCCcccHHHHhhcCCCCCCCH----------HHHHHHHHHhcchhHHhcCccccccc-cCCCCCCCChHHHHHHHHHHHh
Q 040875 771 ALFAVTVRENITYGASDKIDE----------SEIIEAAKAANAHDFIAGLSEGYDTW-CGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 771 ~LF~gTIreNl~~g~~~~~~d----------~ei~~al~~~~l~~~i~~Lp~gldt~-vge~G~~LSgGQrQrlaLARAL 839 (930)
.++.-||.|++.|...-..+. +|+++-++ ++..+ |++.. ......+|||||||||+||+||
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl~------~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLG------FLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQI 536 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHH------HHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHHH------HHhhC--CCCccccCCCcccCCHHHHHHHHHHHHH
Confidence 467789999998843222343 22322221 12221 33321 3445668999999999999999
Q ss_pred ccC--CCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEccCchhhhccCEEEEE------eCCEEEEecChhHHh
Q 040875 840 LKN--PAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVVVAHRLSTIQNCDMIAVL------EQGRVVEEGSHESLL 910 (930)
Q Consensus 840 l~~--~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl 910 (930)
..+ |++|||||||++||++.-+.+.+.|+++. .|.|||+|+||++.+..||+|++| ++|+++..|+|++++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 999 59999999999999999999999998875 599999999999999899999999 699999999999999
Q ss_pred ccCCCcHH
Q 040875 911 AKGPAGAY 918 (930)
Q Consensus 911 ~~~~~g~y 918 (930)
+. ++...
T Consensus 617 ~~-~~~lt 623 (993)
T 2ygr_A 617 RN-KDSIT 623 (993)
T ss_dssp HC-TTCHH
T ss_pred hh-hHHHH
Confidence 73 44443
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.73 E-value=4.7e-19 Score=196.31 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=120.3
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCC----cE-EEECCccCCCCCHHHhhcceEEEccCCCCC
Q 040875 702 IFKGF-SINIEAEKSTALVGQSGSGKSTIIGLIERFY--DPLK----GV-VKIDGEDIRSYHLRSLRRHVALVSQEPALF 773 (930)
Q Consensus 702 vL~~v-sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~~~~----G~-I~idG~di~~~~~~~lR~~i~~V~Q~p~LF 773 (930)
.|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 45554 5799999999999999999999999999998 6665 68 999998752 256788999999999
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc-------cCCCEE
Q 040875 774 AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL-------KNPAVL 846 (930)
Q Consensus 774 ~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl-------~~~~IL 846 (930)
..++.+|+.+... .+ |.+|+|++.++++++ .+|++|
T Consensus 193 ~~~v~~ni~~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 193 PDEVLKHIYVARA--FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHHHGGGEEEEEC--CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHHHhhCEEEEec--CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 8899999976532 11 345777777777777 689999
Q ss_pred EeeccCCCCCHHH-------H-----HHHHHHHHHHc--CCCeEEEEccCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 847 LLDEATSALDSQS-------E-----KLVQEALERLM--VGRTSVVVAHRLSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 847 iLDEaTSaLD~~t-------e-----~~i~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
|+||||+.+|++. + ..+.+.|++.. .++|||+++|....... ++.+.+...|++++++++..|.
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 9999999999863 1 23333444433 38999999998875542 3456778889999998887775
No 110
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=3.2e-18 Score=206.17 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=113.8
Q ss_pred CccEEEEEEEEEcCCC--CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-CCCcEEEECCccCCCCCHHH
Q 040875 682 TGHIELQYVHFAYPAR--PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-PLKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~--~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-~~~G~I~idG~di~~~~~~~ 758 (930)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+|||||||||+++.+.|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 357999988 55531 235689999999 99999999999999999999999974 6777652 1 1
Q ss_pred hhcceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 759 LRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
.+.++++++| +|. -+++||+.. .+|+|++|++.+|+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~----------------------------------------g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG----------------------------------------GKSTFMVEMEEVAL 648 (765)
T ss_dssp SEEEECCCSE---EEEECCC----------------------------------------------CCSHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh----------------------------------------cccHHHHHHHHHHH
Confidence 2456888877 444 244554421 25889999999999
Q ss_pred Hh--ccCCCEEEeecc---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEccCchhhhcc
Q 040875 838 AI--LKNPAVLLLDEA---TSALDSQSE-KLVQEALERLMVGRTSVVVAHRLSTIQNC 889 (930)
Q Consensus 838 AL--l~~~~ILiLDEa---TSaLD~~te-~~i~~~i~~~~~~~TvI~IaHrl~ti~~~ 889 (930)
++ +.+|+++||||| ||++|..+. ..+.+.+.+ .|+|+|++||+.+....+
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99 999999999999 999999875 468888876 589999999999876554
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=3.8e-18 Score=178.43 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=102.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-------CCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHh
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDP-------LKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENI 781 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-------~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl 781 (930)
-|++||.++|+||||||||||++.|++.+.+ ..|.|++++.+. .+ ++++++++|++.++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997665 455888998753 11 2357778888888877999998
Q ss_pred hcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh-------ccCCCEEEeeccCCC
Q 040875 782 TYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI-------LKNPAVLLLDEATSA 854 (930)
Q Consensus 782 ~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL-------l~~~~ILiLDEaTSa 854 (930)
.+... .+..+ |++++..++++ ..+|++++|||||+.
T Consensus 95 ~~~~~--~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 95 YVARA--FNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp EEEEC--CSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred EEEec--CChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 76532 22211 12222222322 348999999999999
Q ss_pred CCHH-------HH-----HHHHHHHHHHc--CCCeEEEEcc----Cchhhhc-cCEEEEEeCCE
Q 040875 855 LDSQ-------SE-----KLVQEALERLM--VGRTSVVVAH----RLSTIQN-CDMIAVLEQGR 899 (930)
Q Consensus 855 LD~~-------te-----~~i~~~i~~~~--~~~TvI~IaH----rl~ti~~-~DrI~vl~~G~ 899 (930)
+|++ .+ ..+.+.+.+.. .|+|||+++| ....+.+ ||++++|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 22 14555555443 3899999999 5555765 89999998753
No 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.70 E-value=1.5e-17 Score=203.61 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=118.5
Q ss_pred ccEEEEEEEEEcCCC--CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hcccCCCCcEEEECCccCC
Q 040875 683 GHIELQYVHFAYPAR--PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLI--------ERFYDPLKGVVKIDGEDIR 752 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~--~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL--------~rl~~~~~G~I~idG~di~ 752 (930)
+.|++++...-+-.. ....|++|++|++++|+.++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888864433221 134689999999999999999999999999999999 45444433221
Q ss_pred CCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHH
Q 040875 753 SYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQR 832 (930)
Q Consensus 753 ~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQr 832 (930)
++++. .+|. ..++.|.+ ...+|+|++++
T Consensus 702 ----------~~~~d---~i~~-------------------------~ig~~d~l--------------~~~lStf~~e~ 729 (934)
T 3thx_A 702 ----------VSIVD---CILA-------------------------RVGAGDSQ--------------LKGVSTFMAEM 729 (934)
T ss_dssp ----------EECCS---EEEE-------------------------ECC-----------------------CHHHHHH
T ss_pred ----------chHHH---HHHH-------------------------hcCchhhH--------------HHhHhhhHHHH
Confidence 00000 0110 01111111 12578888888
Q ss_pred HHHHHHh--ccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEecChh
Q 040875 833 IAIARAI--LKNPAVLLLDEATSALDSQSEKLV-QEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHE 907 (930)
Q Consensus 833 laLARAL--l~~~~ILiLDEaTSaLD~~te~~i-~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 907 (930)
..+|+++ +.+|+++||||||+++|+.....+ ...++... .|+|+|++||..+....||++..+++|++...++++
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8888888 999999999999999999877766 44555543 389999999999888889999999999999888777
Q ss_pred HH
Q 040875 908 SL 909 (930)
Q Consensus 908 eL 909 (930)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=5.7e-19 Score=187.25 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=111.4
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--cccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE--RFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~--rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+++++++..|+.- + .+|.| .|++||.++|+||||||||||++.|. ++.++.+|.+.+++.+..+ .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 4555666666432 1 13443 78999999999999999999999999 7756778888888764321 23344567
Q ss_pred eEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 763 VALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 763 i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+++++|++..+. -++.++..... .....+.... -...+.++.+....+..-..
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVV--GLPSEEKFVL------------------------EDRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC---------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred cCCChHHHhhcCCEEEEEcccccc--ccccccceec------------------------cCcccHHHHHHHHHHHHHhh
Confidence 888888764322 12333321100 0000000000 00123344444444444457
Q ss_pred CCCEEEeeccCCCCC-----HHHHHHHHHHHHHHc-CCCeEEEEccCchhh----------hcc-CEEEEEe
Q 040875 842 NPAVLLLDEATSALD-----SQSEKLVQEALERLM-VGRTSVVVAHRLSTI----------QNC-DMIAVLE 896 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD-----~~te~~i~~~i~~~~-~~~TvI~IaHrl~ti----------~~~-DrI~vl~ 896 (930)
+|++++|||||+.+| ....+.+.+.++.+. .|+|+|++||.++.+ ..| |+|++|+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999999997 566666888777664 499999999999886 347 9999995
No 114
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.69 E-value=2e-19 Score=200.45 Aligned_cols=149 Identities=15% Similarity=0.121 Sum_probs=115.4
Q ss_pred EEEEEEEE---cCCCCCccce---------eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCC
Q 040875 686 ELQYVHFA---YPARPDVIIF---------KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRS 753 (930)
Q Consensus 686 ~~~nvsf~---Y~~~~~~~vL---------~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~ 753 (930)
+|+||+|+ |++. +.++| +++||++++|+.++|+|+||||||||+++|.|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8632 23455 9999999999999999999999999999999999999999999985 46
Q ss_pred CCHHHhhcceEEEc-cCCCC---CcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHH
Q 040875 754 YHLRSLRRHVALVS-QEPAL---FAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQ 829 (930)
Q Consensus 754 ~~~~~lR~~i~~V~-Q~p~L---F~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQ 829 (930)
+....+|+++++++ |++.+ +..|+++||..+.. ..+|..+...++.+.+.+++..+|.|++|.+++-+.+-..+.
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~ 292 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELT 292 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHH
Confidence 66666889999999 99876 89999999987643 223333333333455667888899999999988777878999
Q ss_pred HHHHHHHHH
Q 040875 830 KQRIAIARA 838 (930)
Q Consensus 830 rQrlaLARA 838 (930)
.+|+.....
T Consensus 293 ~~Rl~~l~~ 301 (361)
T 2gza_A 293 FERLALMVL 301 (361)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999987653
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=5.1e-18 Score=187.50 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCCccceeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECCccCCCCCHHHh
Q 040875 688 QYVHFAYPARPDVIIFKGFSI-------NIEAEKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDGEDIRSYHLRSL 759 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl-------~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG~di~~~~~~~l 759 (930)
.+++++|... ..+.|+++.+ ..++|+.++|+|||||||||++++|.|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5788888543 3456777776 77899999999999999999999999999987 577765444332 22 2
Q ss_pred hcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHh
Q 040875 760 RRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAI 839 (930)
Q Consensus 760 R~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARAL 839 (930)
+...++++|.+.-.. ..+-.+ +|||||
T Consensus 167 ~~~~~~v~q~~~~~~-------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------BSCHHH----------------------------------------HHHHHT
T ss_pred hccccceeeeeeccc-------------cCCHHH----------------------------------------HHHHHh
Confidence 334456666543110 011111 999999
Q ss_pred ccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCC
Q 040875 840 LKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQG 898 (930)
Q Consensus 840 l~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 898 (930)
..+|+++++|||| |.++.+.+.+. ...|+||++++|+.+.+..+||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 77776554443 34599999999999999889999888543
No 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.68 E-value=1e-17 Score=181.34 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=110.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHh--hcceEEEccCCCCCc-ccHHHHhhcC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSL--RRHVALVSQEPALFA-VTVRENITYG 784 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~p~LF~-gTIreNl~~g 784 (930)
+|+.++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..+ |.++++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2233 467999999997765 4778887432
Q ss_pred CCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCCCCCHHHHHH
Q 040875 785 ASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATSALDSQSEKL 862 (930)
Q Consensus 785 ~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTSaLD~~te~~ 862 (930)
. ..+.+..+-..++..+. ....++..++||.+||||+..+|+ +|+|| |+++.|
T Consensus 181 ~--------------~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------ 235 (304)
T 1rj9_A 181 K--------------ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------ 235 (304)
T ss_dssp H--------------HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------
T ss_pred H--------------hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------
Confidence 1 00111111111111111 112356777999999999999999 56667 555544
Q ss_pred HHHHHHHHc--CCCeEEEEccCchhhhcc----------CEEEEEeCCE
Q 040875 863 VQEALERLM--VGRTSVVVAHRLSTIQNC----------DMIAVLEQGR 899 (930)
Q Consensus 863 i~~~i~~~~--~~~TvI~IaHrl~ti~~~----------DrI~vl~~G~ 899 (930)
+.+.+++.. .+.|+|++||...+.+.. -.|..+..|+
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 333333322 288999999986553221 3666666665
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.68 E-value=7.2e-19 Score=181.14 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=104.7
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCCcEEEE-------CCccCC
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY-----DPLKGVVKI-------DGEDIR 752 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~~~~G~I~i-------dG~di~ 752 (930)
|+++|++|+|+ .+++++ |++++|++++|+|++|||||||++.|.|.. .|+.|++.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 247788 889999999999999999999999999998 788887764 222221
Q ss_pred CCC-----------HHHhhcceEEEccCCCCCcc-cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 753 SYH-----------LRSLRRHVALVSQEPALFAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 753 ~~~-----------~~~lR~~i~~V~Q~p~LF~g-TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
+.+ .+.+++.++.+.|++..+.+ ++..|+..+. ...++++.+.++..++ |. -.++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~-------~~---~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDSNI-------AV---LVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHHTTC-------CE---EEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHHcCC-------Ce---EEEEe
Confidence 111 13455556666665433332 3333332221 1123344444433222 21 11234
Q ss_pred CCCCCChHHHHH-HHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 821 RGLQLSGGQKQR-IAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 821 ~G~~LSgGQrQr-laLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
....+|+||||| +..||+++++|+++++||||||+|.+.-..+.+.|.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 445799999999 899999999999999999999999999999999888764
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=3.1e-18 Score=192.71 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=102.4
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcc
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+++|++++|++ .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 35899999998 99999999999999999999886655 2444433211 122467
Q ss_pred eEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhcc
Q 040875 763 VALVSQEPALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILK 841 (930)
Q Consensus 763 i~~V~Q~p~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 841 (930)
+++++|++.++ .-||.||+.++.. .+.++.|+.+ .+++.. .++.+.+||++||||+++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 99999998776 6799999977643 2222333322 122321 344566789999999999
Q ss_pred CCC---EEEeeccC-CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 040875 842 NPA---VLLLDEAT-SALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886 (930)
Q Consensus 842 ~~~---ILiLDEaT-SaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti 886 (930)
+|+ +|++|||| +++|+... +.++++..+.++|+|.|+.+++
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTSS
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccCc
Confidence 999 99999999 69998763 2333344578999999988765
No 119
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.67 E-value=5.4e-19 Score=209.94 Aligned_cols=190 Identities=18% Similarity=0.249 Sum_probs=122.4
Q ss_pred cEEEEEEEEEcCCCCCccceeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEEECCccCC
Q 040875 684 HIELQYVHFAYPARPDVIIFKGF----------SINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGEDIR 752 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~v----------sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~idG~di~ 752 (930)
.++++|+++.|+.. ..++|+.+ +++++. +||||+||||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58999999999632 22344444 366665 999999999999999999999988 7999999999963
Q ss_pred CC---CHHHhhcceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH
Q 040875 753 SY---HLRSLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG 828 (930)
Q Consensus 753 ~~---~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG 828 (930)
.. ....+|++++++||++.++. .||++|+.+. .+. +... +..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-------------~~~------~~~~-----------~~~~s-- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-------------QNA------IAGE-----------GMGIS-- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-------------HHH------HHCS-----------SSCCC--
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHH-------------HHH------hcCC-----------ccccc--
Confidence 21 24578899999999997764 5788888431 111 1100 11111
Q ss_pred HHHHHHHHHHhccCCCEEEeecc------CCCCCHHHHHHHHHHHHHHc---CCCeEEEEccCchhh--------hc---
Q 040875 829 QKQRIAIARAILKNPAVLLLDEA------TSALDSQSEKLVQEALERLM---VGRTSVVVAHRLSTI--------QN--- 888 (930)
Q Consensus 829 QrQrlaLARALl~~~~ILiLDEa------TSaLD~~te~~i~~~i~~~~---~~~TvI~IaHrl~ti--------~~--- 888 (930)
++++.++.+...+|+++++||| |++||+...+.+.+.+++.. .+.++++++|+++.. ..
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2345555566678999999999 99999999999999999853 256788899998632 21
Q ss_pred --cCEEEEEeCCEEEEecChhHHh
Q 040875 889 --CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 889 --~DrI~vl~~G~ive~G~~~eLl 910 (930)
...|+|+.++.+++.|+++++.
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 3579999999999999876554
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.67 E-value=1.6e-16 Score=156.73 Aligned_cols=80 Identities=26% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE-
Q 040875 821 RGLQLSGGQKQRIAIARAIL----KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVL- 895 (930)
Q Consensus 821 ~G~~LSgGQrQrlaLARALl----~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl- 895 (930)
...+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|++..++.++|+||||..++..||+|+.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34689999999999999996 5679999999999999999999999999988889999999999998899999855
Q ss_pred -eCCEE
Q 040875 896 -EQGRV 900 (930)
Q Consensus 896 -~~G~i 900 (930)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57754
No 121
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.66 E-value=5.6e-19 Score=190.05 Aligned_cols=130 Identities=8% Similarity=0.025 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCC--C
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDK--I 789 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~--~ 789 (930)
++.+|||+|+||||||||++.|.+++++. | . . ++.+.+|+||+++|++++++|+.++.++. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999863 2 1 1 55677779999999999999997652100 0
Q ss_pred CHHHHHHHHHHhcchhHHhcCccccccc------cCCCCCCCChHHHHHHHHH--HHhccCCCEEEeeccCCCCCHHH
Q 040875 790 DESEIIEAAKAANAHDFIAGLSEGYDTW------CGDRGLQLSGGQKQRIAIA--RAILKNPAVLLLDEATSALDSQS 859 (930)
Q Consensus 790 ~d~ei~~al~~~~l~~~i~~Lp~gldt~------vge~G~~LSgGQrQrlaLA--RALl~~~~ILiLDEaTSaLD~~t 859 (930)
+.....++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222334567788899998764 4566789999999999998 666 999999999999999865
No 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=6.1e-18 Score=183.67 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc-cCCCCcEEEECCccCCCCCHHHhhcceEEE
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF-YDPLKGVVKIDGEDIRSYHLRSLRRHVALV 766 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl-~~~~~G~I~idG~di~~~~~~~lR~~i~~V 766 (930)
+|++.+|.+ ..+++|++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++.. +. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888853 35899999988 99999999999999999998 888899 9999988754 21 2 4678999
Q ss_pred ccCCCCC-cccHHHHhhcCCCCCCCH-HHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 767 SQEPALF-AVTVRENITYGASDKIDE-SEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 767 ~Q~p~LF-~gTIreNl~~g~~~~~~d-~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
+|++.++ .-|+.|+..++.. ... ++..+..+. +.+.. + ....++|||||||+++|||+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~--~~~~e~~~~l~~~--l~~~~-------~----~~~~~~sgg~rqrv~~ara~~---- 129 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA--INCRDCFKTIISY--IDEQF-------E----RYLHDESGLNRRHIIDNRVHC---- 129 (301)
T ss_dssp EC---CCEEEEEEEEC-------------CTTHHHH--HHHHH-------H----HHHHHHTSSCCTTCCCCCCCE----
T ss_pred ecCCCcccCcchhhhhhhhhh--cCcHHHHHHHHHH--HHHHH-------H----HHHHHhCHHhhhhhhhhhhhh----
Confidence 9987544 5688888866532 111 111111111 11111 1 112369999999999999986
Q ss_pred EEEeeccCCC-CCHHHHHHHHHHHHHHcC--CCeEEEEccCchh
Q 040875 845 VLLLDEATSA-LDSQSEKLVQEALERLMV--GRTSVVVAHRLST 885 (930)
Q Consensus 845 ILiLDEaTSa-LD~~te~~i~~~i~~~~~--~~TvI~IaHrl~t 885 (930)
+|++||||++ ||+... +.+++..+ +.++|+..|++.+
T Consensus 130 ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999999985 999864 33444332 6788888999853
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.60 E-value=6.5e-17 Score=166.76 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=104.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccCCCCCHHHhhcceEEEccCCCCCccc-H----HHH
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVT-V----REN 780 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gT-I----reN 780 (930)
-..++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+.+. ..++.++|+||++.+|... + .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999999877643 2467899999999887643 3 344
Q ss_pred hhcCCCC-CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHH
Q 040875 781 ITYGASD-KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQS 859 (930)
Q Consensus 781 l~~g~~~-~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~t 859 (930)
+.+.... ..+.++ ++.++.+++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 4332100 001111 33444557999999 99999
Q ss_pred HHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 040875 860 EKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 860 e~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 911 (930)
.+.+.+.+. +++||++++|+++.+.. |+ +++| .|+++++.+
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999988775 58999999999998875 43 6777 678888764
No 124
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=2.3e-16 Score=165.09 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=113.0
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhc---ceEEEccCCCCCcc
Q 040875 700 VIIFKGFSI-NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR---HVALVSQEPALFAV 775 (930)
Q Consensus 700 ~~vL~~vsl-~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~---~i~~V~Q~p~LF~g 775 (930)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|++.+.+.+. +.++++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 356888887 8999999999999999999999999998888888888876544 2333332 23333332210
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEeeccCC
Q 040875 776 TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA--VLLLDEATS 853 (930)
Q Consensus 776 TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~--ILiLDEaTS 853 (930)
+++..-. .... . .. + ..+- ...|.+|.++.+.+.+...+|+ ++++||||+
T Consensus 83 ---~~~~~~~--~~~~-~-------------~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 ---KKLIIID--ALMK-E-------------KE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ---TTEEEEE--CCC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ---CCEEEEe--cccc-c-------------cC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 0111000 0000 0 00 0 0011 1348999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCCeEEEEccCc--------hhhhc-cCEEEEEeCC
Q 040875 854 AL--DSQSEKLVQEALERLM--VGRTSVVVAHRL--------STIQN-CDMIAVLEQG 898 (930)
Q Consensus 854 aL--D~~te~~i~~~i~~~~--~~~TvI~IaHrl--------~ti~~-~DrI~vl~~G 898 (930)
.+ |+.....+.+.|++.. .++|+|+++|.. +.+.+ ||+|++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9887778888887764 489999999999 44654 9999999764
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.59 E-value=1.2e-18 Score=179.40 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=104.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhc----CC
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITY----GA 785 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~----g~ 785 (930)
.++|+++||+|+||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 35788888888888888887631 11
Q ss_pred CCCCCHHHHHHHHHHhcchhHHhcCccc--cccccCCCCCCCChHHHHHHHHH-HHhccCCCEEEeeccC----------
Q 040875 786 SDKIDESEIIEAAKAANAHDFIAGLSEG--YDTWCGDRGLQLSGGQKQRIAIA-RAILKNPAVLLLDEAT---------- 852 (930)
Q Consensus 786 ~~~~~d~ei~~al~~~~l~~~i~~Lp~g--ldt~vge~G~~LSgGQrQrlaLA-RALl~~~~ILiLDEaT---------- 852 (930)
+...+.+.+. +++..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~---------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~ 150 (208)
T 3c8u_A 80 PETFDFEGFQ---------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDV 150 (208)
T ss_dssp GGGBCHHHHH---------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSE
T ss_pred CchhhHHHHH---------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCE
Confidence 1122333333 334444444 77888999999999999999999 9999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHc-CCCeEEEEccCc
Q 040875 853 -SALDSQSEKLVQEALERLM-VGRTSVVVAHRL 883 (930)
Q Consensus 853 -SaLD~~te~~i~~~i~~~~-~~~TvI~IaHrl 883 (930)
.-+|...+..+++.+++.. .|+|.--+.|+.
T Consensus 151 ~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~ 183 (208)
T 3c8u_A 151 SIRLEVPMADLEARLVQRWLDHGLNHDAAVARA 183 (208)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2345555555555554432 244444444443
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=2.8e-16 Score=175.62 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=115.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhc
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKS--TALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~ 761 (930)
.+++++ +++|++ .+ |+|+||++++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 455666 778853 34 8999999999999 9999999999999999999983 5666665544455577
Q ss_pred ceEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHH----HHHhcchhHHhc-------Cccccccc-------cCCCC
Q 040875 762 HVALVSQEPALF-AVTVRENITYGASDKIDESEIIEA----AKAANAHDFIAG-------LSEGYDTW-------CGDRG 822 (930)
Q Consensus 762 ~i~~V~Q~p~LF-~gTIreNl~~g~~~~~~d~ei~~a----l~~~~l~~~i~~-------Lp~gldt~-------vge~G 822 (930)
.+++++|++.++ .-|+.||+.++.. .+.+.-|+. ++. ...+++.. ++..-|+. |.+.+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999877 5699999988753 333222221 111 11122221 22223333 13445
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEccC
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALER-LM-VGRTSVVVAHR 882 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~-~~-~~~TvI~IaHr 882 (930)
..|+-.+ +.++|+|-.+++|+++||||..|.++.-..+.+.|++ +. .|.+++.|+.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 5677776 7899999999999999999999988766677777776 43 58888888854
No 127
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=6.8e-16 Score=188.51 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=104.2
Q ss_pred ccEEEEEEEEEcC----CCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH
Q 040875 683 GHIELQYVHFAYP----ARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS 758 (930)
Q Consensus 683 g~I~~~nvsf~Y~----~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~ 758 (930)
+.|++++...-.= ...+..|++|+||++++|+.++|+|||||||||+++.+.++.-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 3577776532110 11245689999999999999999999999999999998654211
Q ss_pred hhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 759 LRRHVALVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 759 lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
.+.-.+||++..-+ ++.+++ +...++.|. +..+-..||+|++|+..|+|+
T Consensus 700 -aq~g~~vpa~~~~i--~~~d~i----------------~~~ig~~d~-----------l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 700 -AQIGSYVPAEEATI--GIVDGI----------------FTRMGAADN-----------IYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp -HHHTCCBSSSEEEE--ECCSEE----------------EEEC---------------------CCHHHHHHHHHHHHHH
T ss_pred -hhcCccccchhhhh--hHHHHH----------------HHhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh
Confidence 00112233322100 000011 000111111 112335799999999999999
Q ss_pred hccCCCEEEeeccCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEccCchhhhccCEE
Q 040875 839 ILKNPAVLLLDEATSALDSQSEKLVQ-EALERLM--VGRTSVVVAHRLSTIQNCDMI 892 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSaLD~~te~~i~-~~i~~~~--~~~TvI~IaHrl~ti~~~DrI 892 (930)
+.+|+++||||||+++|+.....+. ..++.+. .|+|+|++||+++....+|+.
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 8999999999999999998877776 5555542 489999999999887666643
No 128
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.57 E-value=3.8e-15 Score=160.44 Aligned_cols=151 Identities=16% Similarity=0.143 Sum_probs=102.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhh-cCCCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENIT-YGASD 787 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~-~g~~~ 787 (930)
.+++|+.++|+||||||||||++.+.+... .|++. .|.+..+ +.++.|++.+... ..++.++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998764 56663 4554321 3457777766532 22333321 221
Q ss_pred CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC--CCCHHHH---HH
Q 040875 788 KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS--ALDSQSE---KL 862 (930)
Q Consensus 788 ~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS--aLD~~te---~~ 862 (930)
..++++..++++...+.+ ..+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..
T Consensus 93 ~~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 234445555555554432 22345678999998865 78899999999999999 9998544 56
Q ss_pred HHHHHHHHc--CCCeEEEEccCchhh
Q 040875 863 VQEALERLM--VGRTSVVVAHRLSTI 886 (930)
Q Consensus 863 i~~~i~~~~--~~~TvI~IaHrl~ti 886 (930)
+.+.|++.. .|+|||+|+|.....
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 677777664 389999999987654
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.56 E-value=6.8e-17 Score=177.06 Aligned_cols=149 Identities=22% Similarity=0.161 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccc--------CCCCcEEEECCccCCCCC---------------HHHhhcceEEE---c
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFY--------DPLKGVVKIDGEDIRSYH---------------LRSLRRHVALV---S 767 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~--------~~~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 767 (930)
+.++|+|+||||||||++.|.|+. .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998764 45778889988 7
Q ss_pred cCCC-CCcccHHHHhhcCCCCCCCHHHHHHHH-------HHhcchhHHhc--CccccccccCCCCCCCChHHHHHHHHHH
Q 040875 768 QEPA-LFAVTVRENITYGASDKIDESEIIEAA-------KAANAHDFIAG--LSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 768 Q~p~-LF~gTIreNl~~g~~~~~~d~ei~~al-------~~~~l~~~i~~--Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
|++. .|..++.||..++.+ ..+.+.+ +...+.+.+.. +.+..+.. .++|+|||||.+.+|
T Consensus 85 q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADR 154 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSE
T ss_pred hcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCE
Confidence 9886 578899999966532 2222211 11122111110 11111111 268999999999999
Q ss_pred HhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCc
Q 040875 838 AILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRL 883 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl 883 (930)
+++.+|+++ ||| +.+.+.|++...+.|+++++|+.
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 999999987 998 56777888777789999999964
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=7.7e-15 Score=151.99 Aligned_cols=151 Identities=16% Similarity=0.129 Sum_probs=97.3
Q ss_pred cceeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 701 IIFKGFSI-NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 701 ~vL~~vsl-~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
+.|+++.. -+++|+.++|+|++|||||||++.+++ ++..+.++++..+ ..+.+.+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 35666654 689999999999999999999999999 4444445555432 1122222 21
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChH--HHHHHHHHHHhccC-CCEEEeeccCCCCC
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGG--QKQRIAIARAILKN-PAVLLLDEATSALD 856 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgG--QrQrlaLARALl~~-~~ILiLDEaTSaLD 856 (930)
..... ..+.+++ ++ .+. + ...|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ~~~~~---~~~~~~~---~~---------~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 MAETR---GLNPEEA---LS---------RFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHTT---TCCHHHH---HH---------HEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHhc---CCChHHH---hh---------cEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11100 1122221 11 110 0 012333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CCeEEEEccCch-------------hhh-ccCEEEEEeCC
Q 040875 857 SQSE--------KLVQEALERLMV--GRTSVVVAHRLS-------------TIQ-NCDMIAVLEQG 898 (930)
Q Consensus 857 ~~te--------~~i~~~i~~~~~--~~TvI~IaHrl~-------------ti~-~~DrI~vl~~G 898 (930)
+..+ ..+.+.|++..+ ++|+|+++|... .+. .||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7542 234444655543 899999999875 344 59999999754
No 131
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.53 E-value=1.9e-15 Score=183.10 Aligned_cols=166 Identities=11% Similarity=0.104 Sum_probs=109.0
Q ss_pred ccEEEEEEEEEcCCC----CCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEEECCccCCCCCHH
Q 040875 683 GHIELQYVHFAYPAR----PDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~----~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~idG~di~~~~~~ 757 (930)
+.|++++. ++|-- ++..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 45777765 34410 234689999999 99999999999999999999999997532 222 11111
Q ss_pred HhhcceEEEccCCCCCc-ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH
Q 040875 758 SLRRHVALVSQEPALFA-VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA 836 (930)
Q Consensus 758 ~lR~~i~~V~Q~p~LF~-gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA 836 (930)
-+.++++++| +|. -++.+|+.. +-..+|+|+++ ++.+
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~-------------------------------------~~stf~~e~~~-~~~i 680 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS-------------------------------------GRSTFMVEMTE-TANI 680 (800)
T ss_dssp -SEEEECCCCE---EEEEEC------------------------------------------------CHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh-------------------------------------hhhhhhHHHHH-HHHH
Confidence 1234666555 332 122233211 11246777665 4444
Q ss_pred HHhccCCCEEEeeccCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEccCchhhhccCEEEEEeCCEEEEe
Q 040875 837 RAILKNPAVLLLDEATSALDSQSEKLV-QEALERLM--VGRTSVVVAHRLSTIQNCDMIAVLEQGRVVEE 903 (930)
Q Consensus 837 RALl~~~~ILiLDEaTSaLD~~te~~i-~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 903 (930)
...+.+|+++||||||+++|+.....+ .+.++... .++|+|++||+.+....||++..+++|++...
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 456899999999999999988655443 55565553 38999999999998877898877777776543
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.53 E-value=3.6e-16 Score=158.42 Aligned_cols=151 Identities=17% Similarity=0.088 Sum_probs=95.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDK 788 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~ 788 (930)
.+++|+.++|+|+|||||||+++.|.+. |..|.|.+||.++.+.. ..++.+++++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 67899999998764322 11345788888765 4568888884321
Q ss_pred CCHHHHHHHHHHhcchhHHhcCcc--ccccc--cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHH
Q 040875 789 IDESEIIEAAKAANAHDFIAGLSE--GYDTW--CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQ 864 (930)
Q Consensus 789 ~~d~ei~~al~~~~l~~~i~~Lp~--gldt~--vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~ 864 (930)
.. .. ..+-...++.+.. +++.. .+.....+|+||+|++++||++.++|+++ +|++..+.+.
T Consensus 77 ----~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 77 ----GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp ----HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred ----HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 00 00 1111000111000 11100 02234579999999999999999999987 5777666666
Q ss_pred HHHHHHcCCCeEEEEccC
Q 040875 865 EALERLMVGRTSVVVAHR 882 (930)
Q Consensus 865 ~~i~~~~~~~TvI~IaHr 882 (930)
+.+++...-.++++.||+
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 655443221233344543
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=3.3e-14 Score=149.64 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=91.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc--ccCC-----CCcEEEECCccCCC-CCHHHhhcceEEEccCCCCCcccHHHH
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIER--FYDP-----LKGVVKIDGEDIRS-YHLRSLRRHVALVSQEPALFAVTVREN 780 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~~-----~~G~I~idG~di~~-~~~~~lR~~i~~V~Q~p~LF~gTIreN 780 (930)
-+++|+.++|+||||||||||++.+++ ..+| .+|.+++++.+... -.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5554 57899999876311 1233445556666654 4556
Q ss_pred hhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCCCCCHH
Q 040875 781 ITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 781 l~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTSaLD~~ 858 (930)
+.+.. ..+.++..+.++ -+++++ .+|+++++||||+.+|++
T Consensus 93 ~~~~~--~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEE--CCSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred eEEEe--cCCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHHHH
Confidence 54432 123333322221 112222 689999999999999986
Q ss_pred -------HHH-----HHHHHHHHHc--CCCeEEEEccCchhh-------------------h-ccCEEEEEeCC
Q 040875 859 -------SEK-----LVQEALERLM--VGRTSVVVAHRLSTI-------------------Q-NCDMIAVLEQG 898 (930)
Q Consensus 859 -------te~-----~i~~~i~~~~--~~~TvI~IaHrl~ti-------------------~-~~DrI~vl~~G 898 (930)
+++ .+.+.+.+.. .++|||+++|-.... . .||.+++|+.|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 2333344332 389999999965432 2 48999999865
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.45 E-value=1.7e-16 Score=174.82 Aligned_cols=180 Identities=15% Similarity=0.121 Sum_probs=118.3
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHHhh
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRSLR 760 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~lR 760 (930)
|+.+|++++|. ...+|+++|+++++|++++|+|++|||||||++.|.|++.|++|+|.++|.|+.+.. ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44455566673 235899999999999999999999999999999999999999999999999886533 23457
Q ss_pred cceEEEccCCCCCc----------cc---HHHHhh---cC--------CCC-CCCHHHHHHHHHH-------------hc
Q 040875 761 RHVALVSQEPALFA----------VT---VRENIT---YG--------ASD-KIDESEIIEAAKA-------------AN 802 (930)
Q Consensus 761 ~~i~~V~Q~p~LF~----------gT---IreNl~---~g--------~~~-~~~d~ei~~al~~-------------~~ 802 (930)
+++++++|+|.+|. || ++|.+. .+ .++ ..++..+.+.++. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 88999999998885 22 233220 00 000 0011111100000 00
Q ss_pred chhHHhcCccccc-cccC-CCCCCCChHHHHHHHHHHHhcc------CCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 803 AHDFIAGLSEGYD-TWCG-DRGLQLSGGQKQRIAIARAILK------NPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 803 l~~~i~~Lp~gld-t~vg-e~G~~LSgGQrQrlaLARALl~------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
+.+.+...|+-+- +.+. .....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1111111111000 1111 0123579999999999999998 688886 99999998888888887653
No 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=6.9e-15 Score=166.13 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=105.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC----HHH--hhcceEEEccCCCCC-ccc
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH----LRS--LRRHVALVSQEPALF-AVT 776 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~--lR~~i~~V~Q~p~LF-~gT 776 (930)
+++||++++|++++|||+||||||||++.|.|++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6788999999999999999999999999999999999999999988876532 222 478899999998755 578
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCC--CCCCChHHHHHHHHHHHhccC-C-CEEEeeccC
Q 040875 777 VRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDR--GLQLSGGQKQRIAIARAILKN-P-AVLLLDEAT 852 (930)
Q Consensus 777 IreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~--G~~LSgGQrQrlaLARALl~~-~-~ILiLDEaT 852 (930)
+++|+.++....++ .+- +||. |.. -.++-.--+|++.++|++..+ | .+|+..+||
T Consensus 364 V~e~l~~a~~~~~D---------------vVL-----IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 364 IFDAIQAAKARNID---------------VLI-----ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHTTCS---------------EEE-----ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHhcCCC---------------EEE-----EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 99999764211111 110 1221 110 011222235789999987643 5 355555588
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 040875 853 SALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885 (930)
Q Consensus 853 SaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~t 885 (930)
++.|.-.. .+.+.+ .-+.|.+++|| ++.
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK-LDG 450 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC-GGG
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc-CCC
Confidence 88655422 122222 23789999999 443
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.39 E-value=4.8e-13 Score=149.89 Aligned_cols=74 Identities=26% Similarity=0.383 Sum_probs=67.5
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEE
Q 040875 823 LQLSGGQKQRI------AIARAILKN-PAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVL 895 (930)
Q Consensus 823 ~~LSgGQrQrl------aLARALl~~-~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl 895 (930)
..|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|++..+++|||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 678999999 99999999999999999999999998876667999999999865669999999
Q ss_pred e
Q 040875 896 E 896 (930)
Q Consensus 896 ~ 896 (930)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 137
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.39 E-value=2.7e-16 Score=159.06 Aligned_cols=166 Identities=18% Similarity=0.105 Sum_probs=106.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCC-cccHHHHhhcCCCCCCCH
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALF-AVTVRENITYGASDKIDE 791 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF-~gTIreNl~~g~~~~~~d 791 (930)
|+.++|+|+|||||||+++.|.+ |.+|.+.+||.++.+. ...++++|++..+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999987 6689999999766432 2456777766332 34666666321
Q ss_pred HHHHHHHHHhcchhHHhcCccccccccCC----CCCCC--ChHHHHHHHHHH------HhccCCCEEEeeccCCCCCHHH
Q 040875 792 SEIIEAAKAANAHDFIAGLSEGYDTWCGD----RGLQL--SGGQKQRIAIAR------AILKNPAVLLLDEATSALDSQS 859 (930)
Q Consensus 792 ~ei~~al~~~~l~~~i~~Lp~gldt~vge----~G~~L--SgGQrQrlaLAR------ALl~~~~ILiLDEaTSaLD~~t 859 (930)
....++ .+. +.+ +|...+. .-..+ |+|++|++.++. +++++|+...+|+ ++|++.
T Consensus 66 --~~~~~~-~~~-~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 66 --TVNFLL-AQN-DVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --HHHHHH-TTC-EEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --HHHHHh-cCC-cEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 001110 010 000 1110000 00124 888888888888 8889998888884 799887
Q ss_pred HHHHHHHHHHHc-CCCeEEEEccC-chhhhc-cCEEEEEeCCEEEEecChhHHh
Q 040875 860 EKLVQEALERLM-VGRTSVVVAHR-LSTIQN-CDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 860 e~~i~~~i~~~~-~~~TvI~IaHr-l~ti~~-~DrI~vl~~G~ive~G~~~eLl 910 (930)
.+. .+.+++.. .+.|+|..+|. ++.+.. ||+|+ ++|+++..|+++-|-
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 666 67776654 36899999999 999876 99999 999999999987663
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.38 E-value=9.4e-16 Score=172.68 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=93.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC----CHHHhhcceEEEc---------c
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY----HLRSLRRHVALVS---------Q 768 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR~~i~~V~---------Q 768 (930)
+|+++ + .++|+.++|+|||||||||++++|.|+++|++|+|.++|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999999887421 1223455666655 9
Q ss_pred CCCCC--c-----ccHHHHhhcCCC--------CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH
Q 040875 769 EPALF--A-----VTVRENITYGAS--------DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI 833 (930)
Q Consensus 769 ~p~LF--~-----gTIreNl~~g~~--------~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl 833 (930)
+|.++ . .|+++|+.+... +..+..+..+.++..++.++. .+.+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99653 2 378888865321 111223444456666654431 234799999999
Q ss_pred HHHHHhccCCCEEE
Q 040875 834 AIARAILKNPAVLL 847 (930)
Q Consensus 834 aLARALl~~~~ILi 847 (930)
|||||+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.38 E-value=1.8e-15 Score=175.08 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=120.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc--ccHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA--VTVR 778 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~--gTIr 778 (930)
.+++++++.+++|+.++|+|||||||||++++|.|+++|++|.|.++|.+--.++ . +..++++.|++. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~--~-~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY--H-ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC--C-SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC--C-CCeEEEEeeccc-ccCCcCHH
Confidence 4789999999999999999999999999999999999999999999997632222 1 456788888766 33 2666
Q ss_pred HHhh----cCCC----CCCCHHHHHHHHHHhcc-------------hhHHhc---CccccccccC-------CCCCCCCh
Q 040875 779 ENIT----YGAS----DKIDESEIIEAAKAANA-------------HDFIAG---LSEGYDTWCG-------DRGLQLSG 827 (930)
Q Consensus 779 eNl~----~g~~----~~~~d~ei~~al~~~~l-------------~~~i~~---Lp~gldt~vg-------e~G~~LSg 827 (930)
+++. ..|. ++..+.|...+++.++- .+.+.. .|.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 6653 2221 24555566666665531 122222 2223322211 12346899
Q ss_pred HHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHc-CCCeEEE--EccCchhhhc-cC
Q 040875 828 GQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLM-VGRTSVV--VAHRLSTIQN-CD 890 (930)
Q Consensus 828 GQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~-~~~TvI~--IaHrl~ti~~-~D 890 (930)
|||||.|+|. + | |+++|+++.+.+.+.|.+.. .++|++. +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999988752 1 7 99999988776666666554 3789885 8999998864 54
No 140
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.36 E-value=3.6e-14 Score=138.14 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=71.5
Q ss_pred EEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEc
Q 040875 688 QYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVS 767 (930)
Q Consensus 688 ~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~ 767 (930)
+|++++|. ...+++++||++++||.++|+||||||||||+++|.|++ |.+|+|.++|.++.+. ...+ + +++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--cce
Confidence 34455663 235899999999999999999999999999999999999 9999999999988531 1122 2 799
Q ss_pred cCCCCCcccHHHHhh
Q 040875 768 QEPALFAVTVRENIT 782 (930)
Q Consensus 768 Q~p~LF~gTIreNl~ 782 (930)
|++.+|.-|+.||+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999998889999984
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.35 E-value=7.3e-13 Score=148.28 Aligned_cols=147 Identities=18% Similarity=0.252 Sum_probs=96.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHH--HhcccCCCC-----cEEEECCccC-CCCCHHHhhcceEEEccCCCCCcccHHHH
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGL--IERFYDPLK-----GVVKIDGEDI-RSYHLRSLRRHVALVSQEPALFAVTVREN 780 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~l--L~rl~~~~~-----G~I~idG~di-~~~~~~~lR~~i~~V~Q~p~LF~gTIreN 780 (930)
-|++|+.++|+||||||||||++. +.+..+++. +.+++|+.+. ....+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 456666543 4899999863 22223444566666655 56677
Q ss_pred hhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCCCCCHH
Q 040875 781 ITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 781 l~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTSaLD~~ 858 (930)
+.+..+ .+.++..+ ++.-+++++ .+|+++++||||+.+|.+
T Consensus 247 i~~~~~--~~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 247 VAYARA--YNADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp EEEEEC--CSHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred EEEecc--CChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 765432 22222222 222222222 479999999999999975
Q ss_pred HH------------HHHHHHHHHHc--CCCeEEEEccCc-------------------hhhhc-cCEEEEEeCCE
Q 040875 859 SE------------KLVQEALERLM--VGRTSVVVAHRL-------------------STIQN-CDMIAVLEQGR 899 (930)
Q Consensus 859 te------------~~i~~~i~~~~--~~~TvI~IaHrl-------------------~ti~~-~DrI~vl~~G~ 899 (930)
.. ..+.+.|+++. .++|||+|+|-. ..+.+ +|.+++|++|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 34555666553 389999999982 22444 89999998763
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5.1e-13 Score=149.06 Aligned_cols=139 Identities=20% Similarity=0.206 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-ccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHH
Q 040875 715 STALVGQSGSGKSTIIGLIER-FYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESE 793 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r-l~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~e 793 (930)
.+.|+||+|+||||+++++.+ ++.|..|+|.++|.+...... -+..+++++|++++.-.. ......+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP-------SDMGNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC-------C----CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH-------hhcCCcchHH
Confidence 399999999999999999999 899999999999988764332 367899999998653210 0000112223
Q ss_pred HHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCC
Q 040875 794 IIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVG 873 (930)
Q Consensus 794 i~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~ 873 (930)
+.+.++.+... .+++..+ .||| +..+|+++|+|||++ ||.++...+.+.+++..++
T Consensus 109 ~~~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 44444332110 0111111 4566 788999999999999 9999999999999887778
Q ss_pred CeEEEEccCchhh
Q 040875 874 RTSVVVAHRLSTI 886 (930)
Q Consensus 874 ~TvI~IaHrl~ti 886 (930)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 9999999998654
No 143
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.34 E-value=9.5e-14 Score=152.19 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=78.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-CCCcEEEEC-CccCCCCCHHHhhcceEEEccCCCCCc-ccHHH
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD-PLKGVVKID-GEDIRSYHLRSLRRHVALVSQEPALFA-VTVRE 779 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-~~~G~I~id-G~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIre 779 (930)
++++++. .+|++++|+|+||||||||+++|.|+.+ |..|+|.++ |.+.. ...++.++++||++.++. -|+++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHH
Confidence 4666654 4899999999999999999999999999 999999997 76653 245678999999998775 48888
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+- .. ..+.+++.+. ..++.+.+ |+...-.....++| ||+||++||++++
T Consensus 281 ~~---l~-~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 281 FG---LW-HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CC---CC-CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hh---hc-CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 53 22 3455554322 12222221 23222234566899 9999999999874
No 144
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.34 E-value=2.1e-14 Score=151.66 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=97.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc-ccHHHHhhcCC--
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIE---RFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA-VTVRENITYGA-- 785 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~---rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~-gTIreNl~~g~-- 785 (930)
++++++|+|+|||||||++++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556777788886554 57888885310
Q ss_pred --------CC-CCCHHHHHHHHHHhcchhHHhcC--cc-c-cccccCCCCCCCChHHHHHHHHHHHh-ccCCCEEEee--
Q 040875 786 --------SD-KIDESEIIEAAKAANAHDFIAGL--SE-G-YDTWCGDRGLQLSGGQKQRIAIARAI-LKNPAVLLLD-- 849 (930)
Q Consensus 786 --------~~-~~~d~ei~~al~~~~l~~~i~~L--p~-g-ldt~vge~G~~LSgGQrQrlaLARAL-l~~~~ILiLD-- 849 (930)
.+ ..+.++.....+..... .+--| |. - ++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~-~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVD-LVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCC-EEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCC-EEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 00 11222222211101100 00000 00 0 01011223457888 55 888 9999999999
Q ss_pred --ccCCCCCHHHHHHHHHHHHHHc
Q 040875 850 --EATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 850 --EaTSaLD~~te~~i~~~i~~~~ 871 (930)
|||+++|.++...+.+.+++..
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999998887654
No 145
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.33 E-value=9.8e-13 Score=143.52 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=109.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH----Hhhcc--eEEEccCCCCCc-ccHHHHh
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR----SLRRH--VALVSQEPALFA-VTVRENI 781 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~----~lR~~--i~~V~Q~p~LF~-gTIreNl 781 (930)
..++|+.++|||||||||||+++.|.|+++|++|+|.++|.|+...+.. .++++ +.+++|++.++. .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999876633 33444 559999987764 5788998
Q ss_pred hcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHH
Q 040875 782 TYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEK 861 (930)
Q Consensus 782 ~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~ 861 (930)
.++.. .+. +.+ =+||. |... .-..=-+++-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~--------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~-- 259 (328)
T 3e70_C 205 QHAKA--------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE-- 259 (328)
T ss_dssp HHHHH--------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--
T ss_pred HHHHh--------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--
Confidence 54310 000 100 02222 1110 011112345569999999999999996665 33221
Q ss_pred HHHHHHHHHcCCCeEEEEccCchh---------hh-ccCEEEEEeCCEEE
Q 040875 862 LVQEALERLMVGRTSVVVAHRLST---------IQ-NCDMIAVLEQGRVV 901 (930)
Q Consensus 862 ~i~~~i~~~~~~~TvI~IaHrl~t---------i~-~~DrI~vl~~G~iv 901 (930)
.+ +.+.+ ..+.|.|++||--.+ +. ..-.|..+..|+-+
T Consensus 260 ~~-~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 QA-RQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HH-HHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HH-HHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 11 22221 238899999995432 11 24578888888765
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.29 E-value=4e-12 Score=122.69 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=70.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc--EEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG--VVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G--~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
+|+++ +|+.++|+|++|+|||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56777 8999999999999999999999999987 57 666666543211
Q ss_pred HhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHH
Q 040875 780 NITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQS 859 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~t 859 (930)
+++.+|++|+||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 3467899999999998 65555
Q ss_pred HHHHHHHHHHHc-CCCe-EEEEccC
Q 040875 860 EKLVQEALERLM-VGRT-SVVVAHR 882 (930)
Q Consensus 860 e~~i~~~i~~~~-~~~T-vI~IaHr 882 (930)
++.+.+.+.+.. +++| +|+++|+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 777888887665 3688 7777775
No 147
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.27 E-value=5.7e-13 Score=143.65 Aligned_cols=89 Identities=29% Similarity=0.375 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccC
Q 040875 235 SNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGS 314 (930)
Q Consensus 235 ~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~s 314 (930)
+.+..+..+.++.+|++++++.+++.+..... .......+.|+++|++|+|+. ..++|+|+||+|++||+++|||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPGA-GPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTTC-BCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccccc-cccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCC
Confidence 34566777888999999999875543322111 111223467999999999974 357999999999999999999999
Q ss_pred CCCCcccccccc
Q 040875 315 GSGKSTVVSASL 326 (930)
Q Consensus 315 GsGKSTll~~ll 326 (930)
|||||||+++|.
T Consensus 90 GsGKSTLl~ll~ 101 (306)
T 3nh6_A 90 GAGKSTILRLLF 101 (306)
T ss_dssp CHHHHHHHHHHT
T ss_pred CchHHHHHHHHH
Confidence 999999999985
No 148
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.22 E-value=1.9e-12 Score=140.46 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=81.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE---CCccCCCCCHHHhh-cceEEEccCCCCC------cccHH
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI---DGEDIRSYHLRSLR-RHVALVSQEPALF------AVTVR 778 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Q~p~LF------~gTIr 778 (930)
++.+|++++++|+||||||||+++|. +.+|..|+|.+ +|.+++.... ..+ +.+++|+|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45679999999999999999999999 99999999999 9999876542 223 3799999999542 4578
Q ss_pred HHh--hcC---------C---CCCCCHHHHHHHHHHhcchh-HHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 779 ENI--TYG---------A---SDKIDESEIIEAAKAANAHD-FIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 779 eNl--~~g---------~---~~~~~d~ei~~al~~~~l~~-~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
+|+ .|+ . +.......+.++++..++.+ ..++. ...|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----------HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 888 443 0 11123356889999998875 43332 3468998888999987
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=2e-11 Score=122.02 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=75.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcE-EEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCC
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV-VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGA 785 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~ 785 (930)
++++++|+.++|+||+|+|||||++++.+.+.|.+|. +.+ + +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~---------~~-------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F---------DT-------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E---------EH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E---------EH--------
Confidence 4677889999999999999999999999998766662 111 0 11
Q ss_pred CCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC-CCCHHHHHHHH
Q 040875 786 SDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS-ALDSQSEKLVQ 864 (930)
Q Consensus 786 ~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS-aLD~~te~~i~ 864 (930)
+++.+-+... .. .+ ... -....+.+|++|+||||++ ++|+.....+.
T Consensus 76 ------~~~~~~~~~~-----~~---~~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 76 ------KDLIFRLKHL-----MD---EG--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHHHHHH-----HH---HT--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHHHHHH-----hc---Cc--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 1111111110 00 00 000 0112245999999999996 89999988898
Q ss_pred HHHHHHc-CCCeEEEEccCchh
Q 040875 865 EALERLM-VGRTSVVVAHRLST 885 (930)
Q Consensus 865 ~~i~~~~-~~~TvI~IaHrl~t 885 (930)
+.+.+.. +++|+|++||+...
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHHHcCCCEEEEcCCChh
Confidence 8887765 68999999998743
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.17 E-value=1.2e-13 Score=147.82 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=103.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCC-CCC-cccHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEP-ALF-AVTVR 778 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p-~LF-~gTIr 778 (930)
.+++++++++++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+....+.++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999999998777777788899999986 333 23567
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC-----
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS----- 853 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS----- 853 (930)
||+..... ..++++. + ...+....+ ...|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~-~-----~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-G-----ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred ehhhhhhc-ccCCCcc-h-----HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 78754322 1111110 0 011122221 2369999999999999999999975 99975
Q ss_pred -------CCCHHHHHHHHHHH
Q 040875 854 -------ALDSQSEKLVQEAL 867 (930)
Q Consensus 854 -------aLD~~te~~i~~~i 867 (930)
--|.+....|.+.+
T Consensus 170 d~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHH
Confidence 23566665565544
No 151
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.16 E-value=6.5e-12 Score=141.16 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=95.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhh
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENIT 782 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~ 782 (930)
-++++|++++|+.|+|||++|||||||++.|.+..+ .+.+.+..+ +...+++|+|++. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 389999999999999999999999999999999843 345555443 3446777877651 1122333331
Q ss_pred cCCC----CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHH
Q 040875 783 YGAS----DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQ 858 (930)
Q Consensus 783 ~g~~----~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~ 858 (930)
+... ...... ..+..+.+. ..+.-+ |-. .+...+||+||+||.++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 1100 011111 111111111 111111 111 122347999999999999999999999999 889987
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEcc
Q 040875 859 SEKLVQEALERLM--VGRTSVVVAH 881 (930)
Q Consensus 859 te~~i~~~i~~~~--~~~TvI~IaH 881 (930)
....+ +.+++.. .+.+++.||.
T Consensus 283 ~~~~~-~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAV-KALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHH-HHHHHHHHTTTSCEEECCT
T ss_pred hHHHH-HHHHHHHHhcCCeEEEEEC
Confidence 65333 3333332 3678877664
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.16 E-value=7.5e-14 Score=145.87 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=80.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-ccc------------CCCCcEEEECCccCCCCCHHHhhcceEEEcc
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE-RFY------------DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQ 768 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~-rl~------------~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 768 (930)
-.+++||++++|+.++|+||||||||||+++|. +++ +|..|++ +|++....+...++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 468999999999999999999999999999999 998 5555544 4544433333333221 122
Q ss_pred CCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcC-ccccccccCCCCCCCChHHHHHH-HHHH-HhccCCCE
Q 040875 769 EPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGL-SEGYDTWCGDRGLQLSGGQKQRI-AIAR-AILKNPAV 845 (930)
Q Consensus 769 ~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~L-p~gldt~vge~G~~LSgGQrQrl-aLAR-ALl~~~~I 845 (930)
+..++.+++..|+ ++.+ .+++.++++.... .+-.+ +.| ...-++++ .-++ .++..|+.
T Consensus 91 ~~~~~~~~~~~~~-~~~~----~~~i~~~~~~~~~--vild~~~~g------------~~~~~~~~~~~~~~v~v~~~~~ 151 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVP----RKNLEDNVDKGVS--TLLVIDWQG------------AFKFMEMMREHVVSIFIMPPSM 151 (231)
T ss_dssp TCEEEEEEETTEE-EEEE----CTTHHHHHHHTCE--EEEECCHHH------------HHHHHHHSGGGEEEEEEECSCH
T ss_pred Cceehhhhhcccc-CCCC----HHHHHHHHHcCCe--EEEEcCHHH------------HHHHHHhcCCCeEEEEEECCcH
Confidence 3333333333343 2221 2234444443211 11101 000 01113443 2222 34677788
Q ss_pred EEeeccCCCCCHHHHHHHHHHHHHHc------CCCeEEEEccCchhh-hccCEEEEEeCCEEEEecChhHHh
Q 040875 846 LLLDEATSALDSQSEKLVQEALERLM------VGRTSVVVAHRLSTI-QNCDMIAVLEQGRVVEEGSHESLL 910 (930)
Q Consensus 846 LiLDEaTSaLD~~te~~i~~~i~~~~------~~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~~~eLl 910 (930)
.++||++++.|..++..+++.|++.. +..+.+++.|+++.+ ...++++-.++++....++.++++
T Consensus 152 ~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~~ 223 (231)
T 3lnc_A 152 EELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRELL 223 (231)
T ss_dssp HHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhHh
Confidence 88999999999988888777665432 234566666666544 335555544445444444444443
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.15 E-value=4.5e-13 Score=146.03 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=94.8
Q ss_pred ccEEEEEEEEEcCCCCCccceeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhcccC--CCC
Q 040875 683 GHIELQYVHFAYPARPDVIIFKGFSINI-------------------EAEKSTALVGQSGSGKSTIIGLIERFYD--PLK 741 (930)
Q Consensus 683 g~I~~~nvsf~Y~~~~~~~vL~~vsl~i-------------------~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--~~~ 741 (930)
+.|+++||++.|. ++++++++++ ++|+++||+|+||||||||+++|.|+++ |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 5699999999992 4889999988 8999999999999999999999999998 999
Q ss_pred cEEEE---CCccCCCCCHHHhhcceEEEccCCCCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccc
Q 040875 742 GVVKI---DGEDIRSYHLRSLRRHVALVSQEPALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTW 817 (930)
Q Consensus 742 G~I~i---dG~di~~~~~~~lR~~i~~V~Q~p~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~ 817 (930)
|+|.+ ||.+.. ...++.++++ |++.++ .-|+.+|+.+. ... ..|-+ .
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~--------------~~l---------~~~~~-~ 161 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFV--------------SDL---------KSGVP-N 161 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHH--------------HHH---------TTTCS-C
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHH--------------HHH---------hCCCC-c
Confidence 99999 998752 2456678888 766443 23555555321 110 01100 0
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCH
Q 040875 818 CGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDS 857 (930)
Q Consensus 818 vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~ 857 (930)
+-..-.+.+.+ +|+..+.+.+.+++++|+|.|..-.|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00000112222 333333355678999999999887763
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.10 E-value=1.7e-12 Score=135.14 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=104.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccc---CCCCcEEEE--------CCccCCC-CCHHHhhcceEEEccCC------CCCc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFY---DPLKGVVKI--------DGEDIRS-YHLRSLRRHVALVSQEP------ALFA 774 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~---~~~~G~I~i--------dG~di~~-~~~~~lR~~i~~V~Q~p------~LF~ 774 (930)
+.+++|+|++||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 678899988 7887763 56778999999999987 4566
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccC-CCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC
Q 040875 775 VTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCG-DRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS 853 (930)
Q Consensus 775 gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vg-e~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS 853 (930)
.++.+++ .++++++++..+..++.+.....+.++.+. ++|.-++|+ .++++++++++++|+++++.
T Consensus 85 ~~v~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEI--------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHH--------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhh--------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 6777776 246889999999999999887777666553 567778887 46778889999999988764
No 155
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.07 E-value=1.8e-12 Score=139.24 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=73.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCcccCccccEEEEeeEEeCCCCCCcccccceeeeecCCC
Q 040875 227 GQALGAGLSNFKYISEAASAGEHIRDVIKRVPDIDSENMEGETLEKFLGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGN 306 (930)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~ 306 (930)
..++..+...+..+.++.+|..|+.++++.+++.... .. ......+.|+++|++|+|+ .++|+|+||+|++|+
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~~-~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--EG-SWKSILTFFNYQNIELITF----INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--SC-CTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--CC-cccccCCeEEEEEEEEEcC----hhhhccceEEecCCC
Confidence 4677788888999999999999999999764321111 11 1111224589999999996 469999999999999
Q ss_pred EEEEEccCCCCCcccccccc
Q 040875 307 TVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 307 ~v~ivG~sGsGKSTll~~ll 326 (930)
+++||||+|||||||+++|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 99999999999999999763
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.05 E-value=3.2e-10 Score=122.24 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=99.9
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|.+++.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5566677777432 1 678888 99999999999999999999999999999999999888765311110
Q ss_pred EEccCCCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 040875 765 LVSQEPALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPA 844 (930)
Q Consensus 765 ~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ 844 (930)
++....+..++. -+|.+ ..-...+-||.+|+++...+++
T Consensus 144 ----------------------------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 144 ----------------------------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp ----------------------------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHTCC
T ss_pred ----------------------------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCCCC
Confidence 011111222221 11111 1123345678999999889999
Q ss_pred EEEeecc-CCCCCHHHHHHHHHHHHHHcCCCeEEEEc
Q 040875 845 VLLLDEA-TSALDSQSEKLVQEALERLMVGRTSVVVA 880 (930)
Q Consensus 845 ILiLDEa-TSaLD~~te~~i~~~i~~~~~~~TvI~Ia 880 (930)
++|+||| |+++|......+.+..+....+.+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999988888877777665666666554
No 157
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=3.5e-11 Score=130.54 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=69.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE---CCccCCCCCHHHhhcceEEEccCCC-------------
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI---DGEDIRSYHLRSLRRHVALVSQEPA------------- 771 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i---dG~di~~~~~~~lR~~i~~V~Q~p~------------- 771 (930)
|++.+|++++|+||||||||||+++|.|+.+|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9999876552222246999999995
Q ss_pred ---CC-cccHHHHhhcCCCC--CCCHHHHHHHHHHhcch-hHHhcCcc
Q 040875 772 ---LF-AVTVRENITYGASD--KIDESEIIEAAKAANAH-DFIAGLSE 812 (930)
Q Consensus 772 ---LF-~gTIreNl~~g~~~--~~~d~ei~~al~~~~l~-~~i~~Lp~ 812 (930)
+| .-|+ +|+.+.... ...+..+.++|+.++|. +..+..|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 34 3367 888875311 12345789999999994 55555443
No 158
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.02 E-value=2.1e-11 Score=128.90 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=82.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh---cccCCCCcEEE--------ECCccC-CCCCHHHhhcceEEEcc
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIE---RFYDPLKGVVK--------IDGEDI-RSYHLRSLRRHVALVSQ 768 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~---rl~~~~~G~I~--------idG~di-~~~~~~~lR~~i~~V~Q 768 (930)
.++++.+ ++|++++|+|+|||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999999 45678899999999996
Q ss_pred C------CCCCcccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCC
Q 040875 769 E------PALFAVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGD 820 (930)
Q Consensus 769 ~------p~LF~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge 820 (930)
+ ..++..++.+|+. .+++.+++..+..++.+......+...+++
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 5 4577778888873 246667777777777776555444444433
No 159
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.99 E-value=4.4e-10 Score=121.31 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=72.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCC
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGAS 786 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~ 786 (930)
+++.++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+... ...
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~-------- 148 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI-------- 148 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH--------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH--------
Confidence 445678999999999999999999999999999889998887764310 001
Q ss_pred CCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH---HHHHHhccCCCEEEeeccCC
Q 040875 787 DKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI---AIARAILKNPAVLLLDEATS 853 (930)
Q Consensus 787 ~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl---aLARALl~~~~ILiLDEaTS 853 (930)
+++...++..++ | . + ...|+|+.|++ +|+||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~gl-------~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGA-------T----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTC-------E----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCC-------c----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 223333333332 1 1 1 13578999999 99999999999999999985
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.97 E-value=6.7e-10 Score=119.68 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=92.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKID 790 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~ 790 (930)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 47999999999999999999999999988777 25777888873 32333333
Q ss_pred HHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 040875 791 ESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERL 870 (930)
Q Consensus 791 d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~ 870 (930)
....+..++ | -... .+ ++..+.+|+++ ++++++|+| |+++|+..+..+.+..+-.
T Consensus 154 ----~~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 154 ----KTYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp ----HHHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred ----HHHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 222221111 1 1111 12 34567778865 999999999 9999987766665544322
Q ss_pred c---CCCeEEEE--ccCchhhhc-cCEEEEEeCCEEEE
Q 040875 871 M---VGRTSVVV--AHRLSTIQN-CDMIAVLEQGRVVE 902 (930)
Q Consensus 871 ~---~~~TvI~I--aHrl~ti~~-~DrI~vl~~G~ive 902 (930)
. .+.+++++ +|..+.+.. +|++-.++.|.++-
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 23456666 999877765 77766667777775
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.96 E-value=2.1e-10 Score=117.08 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=56.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcc-cHHHHh
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAV-TVRENI 781 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~g-TIreNl 781 (930)
|+++++|+.++|+||||||||||+++|.|+++ .+.++|.++...+....+..++|++|+|.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999974 589999988887766678899999999987754 334443
No 162
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=1.9e-10 Score=130.70 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=55.9
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH 755 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~ 755 (930)
.+.++++.+ ..+|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.++|.++.+.+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455665433 2379999999999 999999999999999999999999999999999999997654
No 163
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.95 E-value=3.7e-10 Score=120.12 Aligned_cols=52 Identities=40% Similarity=0.704 Sum_probs=46.6
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++++|++|+|+..++.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4699999999997433357999999999999999999999999999999985
No 164
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=3.6e-11 Score=129.38 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=58.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE---CCccCCCCCHHHhhcceEEEccCCCCCc-----ccHHH
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI---DGEDIRSYHLRSLRRHVALVSQEPALFA-----VTVRE 779 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i---dG~di~~~~~~~lR~~i~~V~Q~p~LF~-----gTIre 779 (930)
+++.+|++++|+|+||+|||||+++|.|+.+|..|+|.+ +|.+++... ...+..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456689999999999999999999999999999999999 898886543 222223899999997654 477 8
Q ss_pred Hhh--cC-----------C---CCCCCHHHHHHHHHHhcchhH
Q 040875 780 NIT--YG-----------A---SDKIDESEIIEAAKAANAHDF 806 (930)
Q Consensus 780 Nl~--~g-----------~---~~~~~d~ei~~al~~~~l~~~ 806 (930)
|+. |. . .....+..+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 111123568889999888653
No 165
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.94 E-value=1.9e-10 Score=119.75 Aligned_cols=50 Identities=32% Similarity=0.456 Sum_probs=45.0
Q ss_pred EEEEeeEEeCCCCC-CcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRP-ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~-~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|++|+|+..+ ..++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 78999999997443 356999999999999999999999999999999985
No 166
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.93 E-value=4.3e-10 Score=118.97 Aligned_cols=52 Identities=38% Similarity=0.655 Sum_probs=46.8
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.|+++|++|+|+.....++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4699999999997543357999999999999999999999999999999985
No 167
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.90 E-value=5.3e-10 Score=117.27 Aligned_cols=51 Identities=33% Similarity=0.641 Sum_probs=45.7
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+|+++|++|+|+.. +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 479999999999521 356999999999999999999999999999999985
No 168
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.90 E-value=6.2e-10 Score=116.05 Aligned_cols=50 Identities=32% Similarity=0.606 Sum_probs=45.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++|+|+. .+.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999963 2357999999999999999999999999999999985
No 169
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=6.4e-12 Score=139.77 Aligned_cols=169 Identities=17% Similarity=0.204 Sum_probs=110.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc------------ccCCCCcEEEECCccCCCCC-HHHhhcce---EEEccCCCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIER------------FYDPLKGVVKIDGEDIRSYH-LRSLRRHV---ALVSQEPAL 772 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~r------------l~~~~~G~I~idG~di~~~~-~~~lR~~i---~~V~Q~p~L 772 (930)
++++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 67899999999985432110 01111222 366677766
Q ss_pred Ccc-cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEee
Q 040875 773 FAV-TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNP--AVLLLD 849 (930)
Q Consensus 773 F~g-TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~--~ILiLD 849 (930)
..+ |..+++ . .+....++.+.. +..+=+..+ ...-..+||+ .+| +|+++|
T Consensus 96 ~~~~s~~e~L--------~-~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~------------~dP~~di~ild 148 (392)
T 1ni3_A 96 TKGASTGVGL--------G-NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGD------------VDPIRDLSIIV 148 (392)
T ss_dssp CCCCCSSSSS--------C-HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSS------------SCHHHHHHHHH
T ss_pred ccCCcHHHHH--------H-HHHHHHHHHHHH---HHHHHhccc---cceeeeeccc------------cCcchhhhhch
Confidence 543 222222 1 123333332221 110001111 1122235554 289 999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH-cC-CCeEEEEccCchhhhc-cCEEE-EEeCC-EEEEecCh
Q 040875 850 EATSALDSQSEKLVQEALERL-MV-GRTSVVVAHRLSTIQN-CDMIA-VLEQG-RVVEEGSH 906 (930)
Q Consensus 850 EaTSaLD~~te~~i~~~i~~~-~~-~~TvI~IaHrl~ti~~-~DrI~-vl~~G-~ive~G~~ 906 (930)
||++..|.+.-+...+.+++. .+ |.|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999988888888776 44 5665 3999998865 99999 99999 88866654
No 170
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.89 E-value=6e-10 Score=115.58 Aligned_cols=51 Identities=27% Similarity=0.481 Sum_probs=46.0
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++++|++|+|+.. +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 469999999999632 457999999999999999999999999999999985
No 171
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.88 E-value=6.1e-11 Score=135.81 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=97.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccH-----
Q 040875 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIER--FYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTV----- 777 (930)
Q Consensus 705 ~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTI----- 777 (930)
-+++++.++..+.|.|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. -|+++. ++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 4778899999999999999999999999876 67777788888888877655544431 133321 11
Q ss_pred --HHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHH----------HHHHHhccCCC-
Q 040875 778 --RENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRI----------AIARAILKNPA- 844 (930)
Q Consensus 778 --reNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrl----------aLARALl~~~~- 844 (930)
.+.+..- ...-++-.+.++..++.++- +|+..+ ...+|+||+|+. ++|+++...|.
T Consensus 231 ~a~~~L~~~---~~EmerR~~ll~~~Gv~~i~-----~yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 231 DAANALRWC---VNEMERRYKLMSALGVRNLA-----GYNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHTTCSSHH-----HHHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHcCCccHH-----HHHHHH---HHHhhcCCcccccccccccchhccccccccCCcE
Confidence 1111000 00001112333344433221 121111 124678887752 46788888998
Q ss_pred EEEeeccCCCCCHHHHHHHHHHHH----HHcC-CCeEEEEccCch
Q 040875 845 VLLLDEATSALDSQSEKLVQEALE----RLMV-GRTSVVVAHRLS 884 (930)
Q Consensus 845 ILiLDEaTSaLD~~te~~i~~~i~----~~~~-~~TvI~IaHrl~ 884 (930)
++++||+++.+|... +.+.+.|. ...+ |.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 23334433 2222 789999999998
No 172
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.88 E-value=7.3e-10 Score=117.80 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=44.8
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++|+|+.. .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 58999999999642 45999999999999999999999999999999985
No 173
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.86 E-value=8.2e-10 Score=115.72 Aligned_cols=48 Identities=33% Similarity=0.525 Sum_probs=43.9
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|++|+|+. +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 789999999952 356899999999999999999999999999999985
No 174
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.84 E-value=8.4e-10 Score=114.06 Aligned_cols=48 Identities=31% Similarity=0.372 Sum_probs=44.3
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHT
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999963 56999999999999999999999999999999985
No 175
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=1.2e-09 Score=116.48 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 46999999999963 46999999999999999999999999999999985
No 176
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.81 E-value=1.3e-09 Score=111.31 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=44.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ + ++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 589999999995 2 6999999999999999999999999999999985
No 177
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=119.89 Aligned_cols=51 Identities=31% Similarity=0.604 Sum_probs=46.4
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.|+++|++++|+. .+.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 56999999999963 2467999999999999999999999999999999985
No 178
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.81 E-value=1.8e-11 Score=135.07 Aligned_cols=142 Identities=23% Similarity=0.226 Sum_probs=93.4
Q ss_pred cceeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhccc----CCCCcEEEECCccCCCCCHHHhhcceEEEccC
Q 040875 701 IIFKGFSINIEAE-------KSTALVGQSGSGKSTIIGLIERFY----DPLKGVVKIDGEDIRSYHLRSLRRHVALVSQE 769 (930)
Q Consensus 701 ~vL~~vsl~i~~G-------e~vaIVG~sGsGKSTL~~lL~rl~----~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~ 769 (930)
.+++++++.+++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..+.....+..+.+|+|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 5889999999887 899999999999999999999998 67788888777766432111124679999998
Q ss_pred CCCCcccHHHHhhcCCC-CCC--------CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc
Q 040875 770 PALFAVTVRENITYGAS-DKI--------DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL 840 (930)
Q Consensus 770 p~LF~gTIreNl~~g~~-~~~--------~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl 840 (930)
+.++. ++.|++..... ... ....+...++..++ - +.. .....||+|+|||++++
T Consensus 112 ~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l-------i-~at----~~~~~Ls~~l~sR~~l~---- 174 (334)
T 1in4_A 112 HRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL-------V-GAT----TRSGLLSSPLRSRFGII---- 174 (334)
T ss_dssp GGCCH-HHHHHHHHHHHTSCCCC---------------CCCEE-------E-EEE----SCGGGSCHHHHTTCSEE----
T ss_pred hhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE-------E-Eec----CCcccCCHHHHHhcCce----
Confidence 88775 78887742110 000 00111111111111 0 112 23458999999998655
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
..||+.+...+.+.|++..
T Consensus 175 ------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ------------EECCCCCHHHHHHHHHHHH
T ss_pred ------------eeCCCCCHHHHHHHHHHHH
Confidence 6777777777777776553
No 179
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.81 E-value=9.3e-10 Score=126.52 Aligned_cols=178 Identities=11% Similarity=0.118 Sum_probs=110.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-EEEECCccCCCCCHHHhhcce-EEEccCCCCCcccHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-VVKIDGEDIRSYHLRSLRRHV-ALVSQEPALFAVTVR 778 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~I~idG~di~~~~~~~lR~~i-~~V~Q~p~LF~gTIr 778 (930)
+.|+++..-+++|+.+.|.||+|+|||||+..+.+-..+..| .+.+-+.+ .+..++++++ +....-+ -
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 367888877999999999999999999999999887766445 56665543 3455555443 1111101 0
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCCCCC
Q 040875 779 ENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATSALD 856 (930)
Q Consensus 779 eNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTSaLD 856 (930)
+++.-| ..++++..++.+..+ .+...|- .+. ....+|.+|.+ +.||++. .+|+++|+|+++.-.+
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~~---~l~~~~l----~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAMG---SLSNAGI----YID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHHH---HHHSSCE----EEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcC---CCCHHHHHHHHHHHH---HHhcCCE----EEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 123222 345554433322221 1222221 111 23478999876 6677776 5799999999999774
Q ss_pred HH--------HHHHHHHHHHHHc--CCCeEEEEcc---------C--ch--------hhh-ccCEEEEEeCCEEE
Q 040875 857 SQ--------SEKLVQEALERLM--VGRTSVVVAH---------R--LS--------TIQ-NCDMIAVLEQGRVV 901 (930)
Q Consensus 857 ~~--------te~~i~~~i~~~~--~~~TvI~IaH---------r--l~--------ti~-~~DrI~vl~~G~iv 901 (930)
.. .-..+.+.|+.+. .++|||+++| + +. .+. +||.|++|..++.-
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 31 1134555565543 2899999999 1 43 344 59999999876543
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.80 E-value=2.5e-09 Score=112.27 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=89.0
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCcHHHHHH-HHhcccCCCCcEEEECCccCCCCCHHHhh---cceEEEccCCCCCccc
Q 040875 702 IFKGF-SINIEAEKSTALVGQSGSGKSTIIG-LIERFYDPLKGVVKIDGEDIRSYHLRSLR---RHVALVSQEPALFAVT 776 (930)
Q Consensus 702 vL~~v-sl~i~~Ge~vaIVG~sGsGKSTL~~-lL~rl~~~~~G~I~idG~di~~~~~~~lR---~~i~~V~Q~p~LF~gT 776 (930)
.|+++ .--+++|+.++|+|++|||||||+. ++....+...+.+++++.+ +.++++ +++++.+|++..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 45555 4568999999999999999999955 4455555545556666542 223332 234444443210
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCCC
Q 040875 777 VRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATSA 854 (930)
Q Consensus 777 IreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTSa 854 (930)
.+|+.+... .. + .+..++. .+..+-+.. ....+....++.++ .+|+++++|++|+-
T Consensus 83 -~~~l~~~~~--~~-~-------------~~~~~~~-~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 -KGMFAMVDA--FT-A-------------GIGKSKE-YEKYIVHDL----TDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp -HTSEEEEEC--ST-T-------------TTCC--C-CCSCBCSCC----SSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred -CCcEEEEec--ch-h-------------hcccccc-cccccccCc----cCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 001111000 00 0 0000000 000001111 12334445555554 57999999999998
Q ss_pred C--CHHHHHHHHHHHHHH--cCCCeEEEEccCchh--------h-hccCEEEEEeC
Q 040875 855 L--DSQSEKLVQEALERL--MVGRTSVVVAHRLST--------I-QNCDMIAVLEQ 897 (930)
Q Consensus 855 L--D~~te~~i~~~i~~~--~~~~TvI~IaHrl~t--------i-~~~DrI~vl~~ 897 (930)
+ |+...+.....+.+. ..|+|+|+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 543333333333333 248999999998765 3 45899999964
No 181
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.80 E-value=1.4e-09 Score=115.18 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=44.7
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 589999999995 357999999999999999999999999999999985
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.80 E-value=9.8e-10 Score=110.34 Aligned_cols=127 Identities=19% Similarity=0.332 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccC-------------CCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
|+.++|+||||||||||+++|.++++ |..|++ ||+++...+.+.++..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888886 89888777777666543 3566666666666
Q ss_pred HhhcCCCCCCCHHHHHHHHHHh----------cchhHHhc--------------CccccccccCCCCCCCChHHHHHHHH
Q 040875 780 NITYGASDKIDESEIIEAAKAA----------NAHDFIAG--------------LSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~~~----------~l~~~i~~--------------Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
|+ ||. +.+++.++++.- ++.. +.. -++-+...+.++|..-....+||++-
T Consensus 76 ~~-yg~----~~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 76 NY-YGS----TVASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA 149 (186)
T ss_dssp EE-EEE----EHHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC------------------------
T ss_pred ee-ccC----cHHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 65 442 234444444431 1111 111 12456666667777777788889998
Q ss_pred HHHhc-----cCCCEEEeec
Q 040875 836 ARAIL-----KNPAVLLLDE 850 (930)
Q Consensus 836 ARALl-----~~~~ILiLDE 850 (930)
|+.-+ +.++.+|..+
T Consensus 150 ~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------CCCCSEEEECS
T ss_pred HHHHHHhhcccCCcEEEECc
Confidence 88765 5567766654
No 183
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.80 E-value=1.5e-09 Score=113.45 Aligned_cols=48 Identities=35% Similarity=0.541 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999963 56899999999999999999999999999999985
No 184
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.80 E-value=1.4e-09 Score=119.16 Aligned_cols=52 Identities=25% Similarity=0.470 Sum_probs=46.4
Q ss_pred ccEEEEeeEEeCCCCC-CcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRP-ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~-~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHh
Confidence 4699999999997532 357899999999999999999999999999999984
No 185
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.79 E-value=1.7e-09 Score=114.33 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 599999999995 346999999999999999999999999999999985
No 186
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.79 E-value=1e-11 Score=133.41 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=98.3
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4456666663 235789999999999 99999999999999999999885 7999999988766555566777888
Q ss_pred EccCCC-CC-cccHHHHhh-cCCCCCC----CHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 766 VSQEPA-LF-AVTVRENIT-YGASDKI----DESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 766 V~Q~p~-LF-~gTIreNl~-~g~~~~~----~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
++|++. .+ .-++.||+. ++..... ..++..+.+. +++ ..|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEEE
Confidence 999863 33 335667773 3321110 1122222221 111 1478999999999999
Q ss_pred hccCCCEEEeeccCC
Q 040875 839 ILKNPAVLLLDEATS 853 (930)
Q Consensus 839 Ll~~~~ILiLDEaTS 853 (930)
+..+|++ |||+..
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
No 187
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.79 E-value=1.8e-09 Score=113.67 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=45.3
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 5799999999995 356999999999999999999999999999999985
No 188
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.79 E-value=1.7e-09 Score=114.41 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=44.3
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 489999999995 356999999999999999999999999999999985
No 189
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.79 E-value=1.5e-09 Score=114.60 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+. .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 4899999999953 46999999999999999999999999999999985
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.78 E-value=1.5e-08 Score=111.71 Aligned_cols=143 Identities=15% Similarity=0.287 Sum_probs=84.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcE-EEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGV-VKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASD 787 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~ 787 (930)
-+++|+.+.|.|++|||||||+..+..-.....|. +++|...- .+. ...+++++-+|+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~---------------- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLL---------------- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCE----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeE----------------
Confidence 47899999999999999999987777554333333 34444211 111 01111111111100
Q ss_pred CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccC--CCEEEeeccCCCC----------
Q 040875 788 KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKN--PAVLLLDEATSAL---------- 855 (930)
Q Consensus 788 ~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~--~~ILiLDEaTSaL---------- 855 (930)
+.. + .+. .|.+.+++++.++ |+++|+||+|+-+
T Consensus 118 ------------------------------i~~-~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 118 ------------------------------VSQ-P--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ------------------------------EEC-C--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ------------------------------Eec-C--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 000 0 111 3456688888865 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----c-CCCeEEEEccCch----------------hhh-ccCEEEEEeCCEEEEecC
Q 040875 856 DS---QSEKLVQEALERL----M-VGRTSVVVAHRLS----------------TIQ-NCDMIAVLEQGRVVEEGS 905 (930)
Q Consensus 856 D~---~te~~i~~~i~~~----~-~~~TvI~IaHrl~----------------ti~-~~DrI~vl~~G~ive~G~ 905 (930)
|+ ...+.+.+.++++ . .++|||+++|-.. .+. .||.++.+..+++...|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1122344444443 1 3899999999543 244 489999998877665554
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.78 E-value=1.5e-10 Score=116.76 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCC-----------CCcEEEECCccCCC--CCHHHhhcceEEEccCCCCCcc--cHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDP-----------LKGVVKIDGEDIRS--YHLRSLRRHVALVSQEPALFAV--TVRE 779 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~-----------~~G~I~idG~di~~--~~~~~lR~~i~~V~Q~p~LF~g--TIre 779 (930)
+++|+|++|||||||++.+.+...+ ..|+|.+||.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998765 57999999976531 2222222333444442210000 1111
Q ss_pred HhhcCCCCCCCHHHHHHHHH---Hh-cchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCC
Q 040875 780 NITYGASDKIDESEIIEAAK---AA-NAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSAL 855 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~---~~-~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaL 855 (930)
+. ...+-+++...++ .. ....-+.-+-+..| |..-..+...+||+++++|+++++| |||+
T Consensus 111 ~~-----~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 111 IA-----KHLTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp TT-----CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred Cc-----CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 11 0001111111111 10 00000000111111 1111123467899999999999999 9999
Q ss_pred CHHHHHHHHHHHHHH
Q 040875 856 DSQSEKLVQEALERL 870 (930)
Q Consensus 856 D~~te~~i~~~i~~~ 870 (930)
|.+....+.+.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888888877653
No 192
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.78 E-value=1.8e-09 Score=113.54 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=44.7
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.++++|++|+|+. .++|+|+||+|++||+++|+||+|||||||+++|.+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999953 569999999999999999999999999999999863
No 193
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.76 E-value=2.5e-09 Score=113.53 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=44.2
Q ss_pred EEEEeeEEeCCCCCC--cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPE--TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~--~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|++++|+.... .++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 789999999962111 56899999999999999999999999999999985
No 194
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.75 E-value=2.4e-09 Score=113.66 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=44.9
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.++++|++|+|+ +.++|+|+||+|++||+++|+||+|||||||+++|.+
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 599999999995 3579999999999999999999999999999999853
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.75 E-value=4.5e-09 Score=126.09 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=66.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhh
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDP--LKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENIT 782 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~ 782 (930)
|+++++|++++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 457889999999999999999999999987765 68999 8999999999999999999999999999988888885
No 196
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.75 E-value=2.6e-09 Score=117.15 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.|+++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh
Confidence 489999999995 357999999999999999999999999999999984
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.74 E-value=1.7e-09 Score=108.42 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=68.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccC-------------CCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYD-------------PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA 774 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~ 774 (930)
+...+|+.++|+||||||||||++.|.+.++ |..|+ +||+|..-++.+++++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 77887 799999999999999875 79999999
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHH
Q 040875 775 VTVRENITYGASDKIDESEIIEAAKA 800 (930)
Q Consensus 775 gTIreNl~~g~~~~~~d~ei~~al~~ 800 (930)
+++.+|. ||. +.+.+.++++.
T Consensus 89 ~~~~~n~-YGt----~~~~v~~~l~~ 109 (197)
T 3ney_A 89 GSYQGNM-FGT----KFETVHQIHKQ 109 (197)
T ss_dssp EEETTEE-EEE----EHHHHHHHHHT
T ss_pred hhhhcee-ccc----chhhHHHHHhc
Confidence 9999994 774 34556665543
No 198
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.74 E-value=1.9e-11 Score=129.57 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=99.1
Q ss_pred EEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceE
Q 040875 685 IELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVA 764 (930)
Q Consensus 685 I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 764 (930)
.+++++...|. ...+++++++++++| ++|+||+|+|||||++++.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45666666663 235789999999999 99999999999999999999885 799999998876655555667788
Q ss_pred EEccCCC-CC-cccHHHHh-hcCCCCC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHH
Q 040875 765 LVSQEPA-LF-AVTVRENI-TYGASDK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIAR 837 (930)
Q Consensus 765 ~V~Q~p~-LF-~gTIreNl-~~g~~~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLAR 837 (930)
.++|++. .+ .-++.||+ .++.... ..+++..+.+. +++. .|||||+||..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-----~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-----HHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-----HHHH---------------HHhCCCCCCCEEEE
Confidence 8888763 22 33566777 3332111 01122222221 1111 47789999999999
Q ss_pred HhccCCCEEEeeccCCC
Q 040875 838 AILKNPAVLLLDEATSA 854 (930)
Q Consensus 838 ALl~~~~ILiLDEaTSa 854 (930)
|+..+|++ ||++.-.
T Consensus 159 a~t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 159 AATNRPDI--LDPALLR 173 (254)
T ss_dssp EEESCGGG--SCGGGGS
T ss_pred EccCCchh--CCHHHcC
Confidence 99999987 7887753
No 199
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.74 E-value=3.4e-09 Score=111.47 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=44.9
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.++++|++++|+. +.++|+|+||+|++||+++|+||+|||||||+++|.+
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTT
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999962 2568999999999999999999999999999999853
No 200
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.73 E-value=3.3e-09 Score=117.10 Aligned_cols=48 Identities=38% Similarity=0.560 Sum_probs=44.4
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH
Confidence 489999999995 357999999999999999999999999999999984
No 201
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.72 E-value=4.6e-09 Score=115.21 Aligned_cols=50 Identities=30% Similarity=0.488 Sum_probs=45.0
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 46999999999942 346899999999999999999999999999999984
No 202
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.70 E-value=5.6e-10 Score=114.86 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=52.4
Q ss_pred cEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCC--------
Q 040875 684 HIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYH-------- 755 (930)
Q Consensus 684 ~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-------- 755 (930)
.|+++|+...|. . ++++++ +.++|+||||||||||+++|.+++.|++|+|.+||.++...+
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 578888865441 1 566777 899999999999999999999999999999999999984432
Q ss_pred HHHhhcceEEEccC
Q 040875 756 LRSLRRHVALVSQE 769 (930)
Q Consensus 756 ~~~lR~~i~~V~Q~ 769 (930)
....+.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 22357789999984
No 203
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.67 E-value=7.8e-09 Score=113.80 Aligned_cols=48 Identities=33% Similarity=0.530 Sum_probs=44.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|. +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 389999999995 346899999999999999999999999999999984
No 204
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.66 E-value=7.2e-09 Score=113.95 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=44.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHH
Confidence 389999999995 356899999999999999999999999999999984
No 205
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.65 E-value=8.4e-09 Score=110.49 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=33.4
Q ss_pred cccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 274 LGEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 274 ~~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+.++++|++|.+ .++|+|+||+|++|++++|+||+|||||||+++|.
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3469999999963 36899999999999999999999999999999985
No 206
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.64 E-value=8.6e-09 Score=113.92 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=44.3
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHH
Confidence 489999999995 356899999999999999999999999999999984
No 207
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.63 E-value=4.4e-09 Score=104.92 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=63.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEE----------ECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVK----------IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 345443 47888888888888764 67899999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHH
Q 040875 780 NITYGASDKIDESEIIEAAK 799 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~ 799 (930)
| .||. +.+.++++++
T Consensus 80 n-~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHE 94 (180)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cccc----cHHHHHHHHH
Confidence 9 4553 3455666554
No 208
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.63 E-value=9.1e-09 Score=113.94 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=44.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence 489999999995 356899999999999999999999999999999984
No 209
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.61 E-value=9.9e-09 Score=112.49 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=42.6
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|++++|+. . +|+|+||+|++||+++|+||||||||||+++|.
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHH
Confidence 689999999952 4 899999999999999999999999999999985
No 210
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.60 E-value=7.1e-09 Score=105.90 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=45.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcC
Q 040875 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYG 784 (930)
Q Consensus 705 ~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g 784 (930)
++-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||+.+|.+ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3334788899999999999999999999999875 48999999999986 676554
No 211
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.60 E-value=1.9e-09 Score=128.51 Aligned_cols=158 Identities=11% Similarity=0.097 Sum_probs=102.5
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-cEEEECCccCCCCCHHHhhcceEEEccCC--------
Q 040875 700 VIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLK-GVVKIDGEDIRSYHLRSLRRHVALVSQEP-------- 770 (930)
Q Consensus 700 ~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~-G~I~idG~di~~~~~~~lR~~i~~V~Q~p-------- 770 (930)
..+++++++.+++|+.+.|+||+|+|||||+++|.++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 357899999999999999999999999999999999999887 8899988776543 45688887754
Q ss_pred --------------CCC-cccHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHH
Q 040875 771 --------------ALF-AVTVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAI 835 (930)
Q Consensus 771 --------------~LF-~gTIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaL 835 (930)
+.| .-++.+|+..+.........+.+ ......+.+.. ++..- .....+|+|++|++..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~--~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA--TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC--TTCCHHHHHCE----ECCCC-C----CCCCGGGGEEC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc--CCCCHHhcCce----EEech-hhcCCccccccccccC
Confidence 111 12233333322110000000000 00001111111 11110 1123599999999999
Q ss_pred HHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHH
Q 040875 836 ARAILKNPAVLLLDEATSALDSQSEKLVQEALERL 870 (930)
Q Consensus 836 ARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~ 870 (930)
++....++.+|+|||... |+++....+.+.|++.
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 999999999999999998 7998888888888753
No 212
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.59 E-value=1.1e-08 Score=108.00 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=43.4
Q ss_pred EEEEeeEEeCCCC-CCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 277 VEFRNVVFAYPSR-PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 277 i~~~~~~f~y~~~-~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++++|++++|+.. .+.++|+|+||+|+ |++++|+||+|||||||+++|.+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999631 11568999999999 99999999999999999999853
No 213
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.59 E-value=1.4e-08 Score=106.29 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=41.0
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++ ++|+|+||+|++||+++|+||+|||||||+++|.
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4889999986 4899999999999999999999999999999985
No 214
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.58 E-value=8.5e-09 Score=113.47 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=43.8
Q ss_pred cEEEEeeEEeCCCCCCcc--cccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETI--IFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~--~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++++|+. .+ +|+|+||+|++||+++|+||||||||||+++|.
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 3889999999953 45 899999999999999999999999999999984
No 215
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.57 E-value=7.4e-10 Score=122.79 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=87.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHH
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVREN 780 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreN 780 (930)
.+++++++++++|+.++|+||+|||||||+++|.+.+ +|++...+ ..+ +.++..++++||.+.+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 4889999999999999999999999999999999964 67776511 111 22333478889988653 234
Q ss_pred hhcCCC--CCC-CHHHHHHHHHHhcchhHHhc---------Cccccc-----cccCCCCCCCChHHHHHHHHHHHhccCC
Q 040875 781 ITYGAS--DKI-DESEIIEAAKAANAHDFIAG---------LSEGYD-----TWCGDRGLQLSGGQKQRIAIARAILKNP 843 (930)
Q Consensus 781 l~~g~~--~~~-~d~ei~~al~~~~l~~~i~~---------Lp~gld-----t~vge~G~~LSgGQrQrlaLARALl~~~ 843 (930)
+..... ... +.+.+. ....+.+.+++ -|+.++ -.+..+-..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 432211 000 000000 11222222221 000000 0123345578999999999999999999
Q ss_pred CEEE-eeccCC
Q 040875 844 AVLL-LDEATS 853 (930)
Q Consensus 844 ~ILi-LDEaTS 853 (930)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999997
No 216
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.53 E-value=2.5e-08 Score=103.96 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=40.5
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|++++|+. +|+|+||+|++ |+++|+||+|||||||+++|.
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHh
Confidence 689999999952 49999999999 999999999999999999984
No 217
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.49 E-value=4.4e-08 Score=99.22 Aligned_cols=135 Identities=19% Similarity=0.208 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC-----CC------CcEEEECCccCC----CC-CHHHhhcceEEEccCCC--C--Cc
Q 040875 715 STALVGQSGSGKSTIIGLIERFYD-----PL------KGVVKIDGEDIR----SY-HLRSLRRHVALVSQEPA--L--FA 774 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~-----~~------~G~I~idG~di~----~~-~~~~lR~~i~~V~Q~p~--L--F~ 774 (930)
+++|+|++|||||||++.|.+... |+ .|+|.+||.++. +. +.+.+|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 789999999999999999999742 33 578999997652 22 22333333333333331 1 11
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHH---HHHhc-chhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeec
Q 040875 775 VTVRENITYGASDKIDESEIIEA---AKAAN-AHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDE 850 (930)
Q Consensus 775 gTIreNl~~g~~~~~~d~ei~~a---l~~~~-l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDE 850 (930)
.+-.. +-+++... ++... -..-+.-+-+..|-. + -...+ ...||+++++|+++++|
T Consensus 87 ~~~~~----------s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~--~-~~~~~------~~~a~~l~~~~~~~~~d- 146 (199)
T 2f9l_A 87 IAKHL----------TYENVERWLKELRDHADSNIVIMLVGNKSDLR--H-LRAVP------TDEARAFAEKNNLSFIE- 146 (199)
T ss_dssp TTCHH----------HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG--G-GCCSC------HHHHHHHHHHTTCEEEE-
T ss_pred CcCHH----------HHHHHHHHHHHHHHhcCCCCeEEEEEECcccc--c-ccCcC------HHHHHHHHHHcCCeEEE-
Confidence 11100 11111111 11100 000000000111110 0 01122 35689999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 040875 851 ATSALDSQSEKLVQEALERL 870 (930)
Q Consensus 851 aTSaLD~~te~~i~~~i~~~ 870 (930)
|||+|.+.-..+.+.|.+.
T Consensus 147 -~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 147 -TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp -CCTTTCTTHHHHHHHHHHH
T ss_pred -EeCCCCCCHHHHHHHHHHH
Confidence 9999999877777766543
No 218
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.43 E-value=3.1e-08 Score=98.84 Aligned_cols=99 Identities=25% Similarity=0.232 Sum_probs=63.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc--cCCCCCH----HHhhcceEEEccCCCC-C---
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE--DIRSYHL----RSLRRHVALVSQEPAL-F--- 773 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~--di~~~~~----~~lR~~i~~V~Q~p~L-F--- 773 (930)
+++++++.+| .++|+|+||||||||+.+|.++..+..|...-.+. ++-..+. ...+..+.+++|+|.- |
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999988887765433221 1111111 0245679999998731 1
Q ss_pred --cccHHHHh--------hcCCCCCCCHHHHHHHHHHhcch
Q 040875 774 --AVTVRENI--------TYGASDKIDESEIIEAAKAANAH 804 (930)
Q Consensus 774 --~gTIreNl--------~~g~~~~~~d~ei~~al~~~~l~ 804 (930)
.-+|+..+ .... ...+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 01222221 1111 134667888888877764
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=4.9e-07 Score=103.19 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=75.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHh
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENI 781 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl 781 (930)
.++++++.+++| +.|+||+|+|||||++++.+.... | ++.-+..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHHH
Confidence 567777888877 899999999999999999984311 0 0000000000
Q ss_pred hcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCC--------
Q 040875 782 TYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATS-------- 853 (930)
Q Consensus 782 ~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTS-------- 853 (930)
.. .+| .+++++|-.+++|...+|.||++||+.+
T Consensus 87 --------------------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 87 --------------------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp --------------------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred --------------------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 011 2678899999999999999999999944
Q ss_pred --CCCHHHHHHHHHHHHHH-----cCCCeEEEEccCchhh
Q 040875 854 --ALDSQSEKLVQEALERL-----MVGRTSVVVAHRLSTI 886 (930)
Q Consensus 854 --aLD~~te~~i~~~i~~~-----~~~~TvI~IaHrl~ti 886 (930)
+.|.+.++.+.+.+... ..+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666666666665543 1366889999998654
No 220
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.36 E-value=1.6e-07 Score=104.55 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=34.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc--ccCCCCcEEEEC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER--FYDPLKGVVKID 747 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~~~~G~I~id 747 (930)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 47899999998 999999999999999999999 777777766433
No 221
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.30 E-value=4.2e-08 Score=114.10 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=63.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-EE-EECCccCCC-------CCH---HHhhcceEEEccCCCCCccc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-VV-KIDGEDIRS-------YHL---RSLRRHVALVSQEPALFAVT 776 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~I-~idG~di~~-------~~~---~~lR~~i~~V~Q~p~LF~gT 776 (930)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +| ++||.++.+ ++. ...++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999886 78 499987643 222 23456789999873 3
Q ss_pred HHHHhhcCCCC---CCCHHHHHHHHHHhc
Q 040875 777 VRENITYGASD---KIDESEIIEAAKAAN 802 (930)
Q Consensus 777 IreNl~~g~~~---~~~d~ei~~al~~~~ 802 (930)
..+|+.+.... ....++..++++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 44555443211 123355667777665
No 222
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.30 E-value=2.7e-08 Score=101.01 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=45.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE--EECCccCC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV--KIDGEDIR 752 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I--~idG~di~ 752 (930)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 35677888889999999999999999999999999997 67988 99987664
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.29 E-value=5.2e-08 Score=101.91 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=35.9
Q ss_pred ccEEEEEE-EEEcCCCCCccceeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 683 GHIELQYV-HFAYPARPDVIIFKGFSINIEA---EKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 683 g~I~~~nv-sf~Y~~~~~~~vL~~vsl~i~~---Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
..++++|+ +++|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 16 ~~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 999932 34699999999999 9999999999999999999999865
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.29 E-value=1.1e-07 Score=96.52 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=43.6
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC
Q 040875 707 SINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA 771 (930)
Q Consensus 707 sl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~ 771 (930)
.++-++|+.++|+|+|||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 4677899999999999999999999999987 8999999887531 1122235677777753
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.27 E-value=2e-07 Score=101.26 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=56.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCH----HHh-----hcceEEE-ccCC
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHL----RSL-----RRHVALV-SQEP 770 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Q~p 770 (930)
++++++|++++|+.++++|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +.++.++ +|++
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3467888899999999999999999999999999999999999999988865432 344 6678888 5654
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.27 E-value=1.9e-07 Score=94.96 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=40.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPA 771 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~ 771 (930)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +....+.. ...+..+++++|+|.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 47899999999999999999999999999977655 212 11222211 112334778888764
No 227
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=3e-07 Score=93.12 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=25.1
Q ss_pred EcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 693 AYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 693 ~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+||.++..+.++|+||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566666678999999999999999999999999999999999876
No 228
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.23 E-value=4.5e-07 Score=100.43 Aligned_cols=139 Identities=18% Similarity=0.257 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC-----------CCCcEEEECCccCCCCCHHHhhcceEEEccCCCC----CcccHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYD-----------PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPAL----FAVTVRE 779 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~-----------~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~L----F~gTIre 779 (930)
+|+|||++|||||||++.|.+... |..|+|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHH-
Confidence 499999999999999999999765 67799999997652 23345666665531 232322
Q ss_pred Hhhc--------CCCCCC--CHHHH---HHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHH----HHh-cc
Q 040875 780 NITY--------GASDKI--DESEI---IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIA----RAI-LK 841 (930)
Q Consensus 780 Nl~~--------g~~~~~--~d~ei---~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLA----RAL-l~ 841 (930)
.+.- +..+.. .++++ .+.++..++. ..| --.|+.+...+|+|++||+.++ +++ ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 2211 111111 11221 2333333221 111 0112333445788889988877 666 44
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHc
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLM 871 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~ 871 (930)
+|++ +||||+|.+.-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 5555 8999999998888888876653
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.21 E-value=3.1e-08 Score=113.84 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred EEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEE
Q 040875 686 ELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVAL 765 (930)
Q Consensus 686 ~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 765 (930)
+++++...|. ++.+++++++++++| +.|+||+|+|||||++++.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444452 224789999999999 99999999999999999999875 7899999999877655566677888
Q ss_pred EccCCC-CCc-ccHHHHhh-cCCCCC----CCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHH
Q 040875 766 VSQEPA-LFA-VTVRENIT-YGASDK----IDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARA 838 (930)
Q Consensus 766 V~Q~p~-LF~-gTIreNl~-~g~~~~----~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARA 838 (930)
++|++. .+. -.+-|||. ++.... ...++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888874 222 24556773 332211 112233333221 121 256677777777777
Q ss_pred hccCCCEEEeeccCCC
Q 040875 839 ILKNPAVLLLDEATSA 854 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSa 854 (930)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 7777776 7777653
No 230
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.19 E-value=2.3e-07 Score=95.43 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=22.1
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..|+|+||+|++|++++|+||||||||||+++|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~ 44 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLL 44 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999885
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.19 E-value=3.7e-06 Score=92.13 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=44.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE-EECCccCCCCCHHHhhcceEEEccCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV-KIDGEDIRSYHLRSLRRHVALVSQEP 770 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I-~idG~di~~~~~~~lR~~i~~V~Q~p 770 (930)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ ++|+.+..+ ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhh
Confidence 378999999999999999999999999887777765 777754332 22445667666654
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.16 E-value=1e-06 Score=89.68 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEI 794 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei 794 (930)
.++|+|++||||||+.+.|.++ |...+|+-++ . ..+. .++ . +.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~--------~------------------~~~~--~~~--~-~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV--------A------------------REVV--AKD--S-PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH--------H------------------HHTT--CSS--C-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH--------H------------------HHHc--cCC--h-HHH
Confidence 6899999999999999999983 6566665222 1 1110 010 1 112
Q ss_pred HHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCC
Q 040875 795 IEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGR 874 (930)
Q Consensus 795 ~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~ 874 (930)
.+..+..| +. .-.+.|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+++. .+.
T Consensus 48 ~~i~~~~g-----------------~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~ 106 (206)
T 1jjv_A 48 SKIVEHFG-----------------AQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAP 106 (206)
T ss_dssp HHHHHHHC-----------------TT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSS
T ss_pred HHHHHHhC-----------------HH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCC
Confidence 22222221 11 123678999999999999888654333 3355666666666666543 356
Q ss_pred eEEEEccCchhh---hccCEEEEEe
Q 040875 875 TSVVVAHRLSTI---QNCDMIAVLE 896 (930)
Q Consensus 875 TvI~IaHrl~ti---~~~DrI~vl~ 896 (930)
++|+-+|.+... ..||++++++
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEEechhhhcCcHhhCCEEEEEE
Confidence 888888887654 4599999986
No 233
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=3.7e-06 Score=93.27 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=50.2
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEee-ccCCCCCHHHHHHHHHHHHHHcCCCeEEEEc--cCch
Q 040875 822 GLQLSGGQKQRIAIARAILKNPAVLLLD-EATSALDSQSEKLVQEALERLMVGRTSVVVA--HRLS 884 (930)
Q Consensus 822 G~~LSgGQrQrlaLARALl~~~~ILiLD-EaTSaLD~~te~~i~~~i~~~~~~~TvI~Ia--Hrl~ 884 (930)
...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++++|+|. |++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3468999999887 66666777788999 9999999998877777777766688999999 7764
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=3.4e-07 Score=93.45 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=58.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEEE----------ECCccCCCCCHHHhhcceEEEccCCCCCcccHHH
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVVK----------IDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRE 779 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIre 779 (930)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 467777777777777654 6777787777777
Q ss_pred HhhcCCCCCCCHHHHHHHHH
Q 040875 780 NITYGASDKIDESEIIEAAK 799 (930)
Q Consensus 780 Nl~~g~~~~~~d~ei~~al~ 799 (930)
| .||. +.+.+.++++
T Consensus 83 ~-~yg~----~~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGT----PLEYVEEKLA 97 (208)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cCCC----cHHHHHHHHH
Confidence 7 3443 3444554443
No 235
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.09 E-value=8.4e-07 Score=93.61 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=48.6
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEEEEe
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIAVLE 896 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 896 (930)
|++|||||..+|+++++|||| |+++... .++....|.||++++|+.+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~---~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVET---ALRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHH---HHHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHH---HHHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9887543 3444456999999999998766688876553
No 236
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.07 E-value=2.2e-07 Score=96.49 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=49.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC------CHHH----hhcceEEEccCCCCCc
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY------HLRS----LRRHVALVSQEPALFA 774 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~------~~~~----lR~~i~~V~Q~p~LF~ 774 (930)
.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|.... ...+ .++++++++|++.++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 45578999999999999999999999998 78999999886432 2221 2567889999886654
No 237
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.07 E-value=8.6e-07 Score=87.32 Aligned_cols=30 Identities=40% Similarity=0.602 Sum_probs=28.0
Q ss_pred ceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 297 DFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 297 ~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
|+||++++||+++++||+|||||||++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999754
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.06 E-value=2.6e-07 Score=96.65 Aligned_cols=48 Identities=31% Similarity=0.342 Sum_probs=32.3
Q ss_pred cEEEEee-EEeCCCCCCcccccceeeeecC---CCEEEEEccCCCCCccccccc
Q 040875 276 EVEFRNV-VFAYPSRPETIIFKDFCLKVPA---GNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 276 ~i~~~~~-~f~y~~~~~~~~L~~isl~i~~---G~~v~ivG~sGsGKSTll~~l 325 (930)
.++++|+ +|+|. .+.++|+|+||+|++ |+.++|+|++||||||+.+.|
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHH
Confidence 5899999 99993 245799999999999 999999999999999999876
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=7.8e-07 Score=89.99 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=21.2
Q ss_pred EeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 284 FAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 284 f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.+||+.+..++++|+||++++|+.++|+||+||||||+.+.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 4 HHHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHH
T ss_pred ccCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHH
Confidence 357777888999999999999999999999999999999876
No 240
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.04 E-value=1.9e-07 Score=101.02 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=72.7
Q ss_pred cceeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHhcccC--CCCcEEEECCccCCCCCHHHhhcceEEEccCCCC
Q 040875 701 IIFKGFSINIEAEK------STALVGQSGSGKSTIIGLIERFYD--PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPAL 772 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge------~vaIVG~sGsGKSTL~~lL~rl~~--~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~L 772 (930)
..|++++..+.+++ .+||+|+|||||||+++.|.++++ |.+|+ +++++||.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 35677777777776 899999999999999999999987 34554 4444555444
Q ss_pred CcccHHHHh----hcCCCCCCCHHHHHHHHHHhcchhHHhcCcccc---ccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 040875 773 FAVTVRENI----TYGASDKIDESEIIEAAKAANAHDFIAGLSEGY---DTWCGDRGLQLSGGQKQRIAIARAILKNPAV 845 (930)
Q Consensus 773 F~gTIreNl----~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gl---dt~vge~G~~LSgGQrQrlaLARALl~~~~I 845 (930)
.....++.. .+|.|...+.+.+.+.++.. ..|- .-|+ +|-+..+|+.-+...+..|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L---------~~g~~~v~~P~------yd~~~~~r~~~~~~~v~~~dI 199 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAI---------KSGQRNVRIPV------YSHHYYDIVRGQYEIVDQPDI 199 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHH---------HTTCSSEEEEE------EETTTTEEEEEEEEEECSCSE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHHHHHhh---------hccccccccch------hhhhccccccCceeeccCCCE
Confidence 433322221 12333345555555554432 2222 1111 122222333223345678999
Q ss_pred EEeeccCCCCCH
Q 040875 846 LLLDEATSALDS 857 (930)
Q Consensus 846 LiLDEaTSaLD~ 857 (930)
+|+|.+-.-.|.
T Consensus 200 VIvEGi~lL~~~ 211 (321)
T 3tqc_A 200 VILEGLNILQTG 211 (321)
T ss_dssp EEEECTTTTCCC
T ss_pred EEEEcccccccc
Confidence 999998876654
No 241
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.02 E-value=8.2e-07 Score=93.05 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 290 PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 290 ~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++.++|+|+||++++|++++|+||+||||||+++.|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999999999999999763
No 242
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.02 E-value=3.9e-06 Score=102.24 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEeeccCC-CCCHHHHHHHHHHHHHHcCC-CeEEE-EccCchhhhc-cC
Q 040875 823 LQLSGGQKQRIAIARAILKNPAVLLLDEATS-ALDSQSEKLVQEALERLMVG-RTSVV-VAHRLSTIQN-CD 890 (930)
Q Consensus 823 ~~LSgGQrQrlaLARALl~~~~ILiLDEaTS-aLD~~te~~i~~~i~~~~~~-~TvI~-IaHrl~ti~~-~D 890 (930)
.-+|.|+.+|..++++++.+++++|+|||.. ++|.+.-..+.+.+.+...+ +++++ .||+.+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 4578999999999999999999999999997 89987666556666555544 55555 5898877653 44
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.01 E-value=5.4e-07 Score=87.24 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=37.5
Q ss_pred EeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 280 RNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 280 ~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+++.|. +..+++++||++++|++++|+||+|||||||+++|.
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 34566663 346899999999999999999999999999999884
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.99 E-value=3.4e-06 Score=92.22 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=25.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
-+++|+.+.|.|++|+|||||+..+..-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.99 E-value=1.4e-05 Score=89.74 Aligned_cols=181 Identities=18% Similarity=0.121 Sum_probs=102.7
Q ss_pred EEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHH-hhcceEE
Q 040875 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRS-LRRHVAL 765 (930)
Q Consensus 687 ~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~i~~ 765 (930)
.++++..|.... ++++++ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...+ ++..
T Consensus 79 ~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 344555564221 567777 89999999999999999999999999999999999888886644332 2210
Q ss_pred EccCCCCCcccHHHHhhcCCC-CCCCHHHH-HHHHHHhcchhHHhcCccccccccCCCCCCC---ChHHHHHHHHHHHhc
Q 040875 766 VSQEPALFAVTVRENITYGAS-DKIDESEI-IEAAKAANAHDFIAGLSEGYDTWCGDRGLQL---SGGQKQRIAIARAIL 840 (930)
Q Consensus 766 V~Q~p~LF~gTIreNl~~g~~-~~~~d~ei-~~al~~~~l~~~i~~Lp~gldt~vge~G~~L---SgGQrQrlaLARALl 840 (930)
.=+.|+.+-+. ...+..++ .++++.+. .+++|..+=+-+-.+ ..-..+...+++++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 00112211110 11234444 33443321 135554443322222 234567778888887
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh--------h-hc-cCEEEEEeCCEE
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST--------I-QN-CDMIAVLEQGRV 900 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~t--------i-~~-~DrI~vl~~G~i 900 (930)
.++-+|++| ++++.|.... + +...+. -+.|-+++||=-.+ + .. --.|..+..|+-
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~ 275 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEK 275 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSS
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCC
Confidence 666678888 5566554422 2 223222 24577777752111 1 11 346677766653
No 246
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.96 E-value=9.3e-07 Score=96.03 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=49.6
Q ss_pred CccEEEEEEEEEcCCCCCcccee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 682 TGHIELQYVHFAYPARPDVIIFK--------------GFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~--------------~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
.+.++|+||+|.||.. ..+|+ |+++.|.+|++++|+|++|+|||||++.|.|...
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 5789999999999853 45788 8999999999999999999999999999999863
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.95 E-value=2.4e-07 Score=102.81 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=42.0
Q ss_pred EEEeeEEe---CCCCCCcccc---------cceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 278 EFRNVVFA---YPSRPETIIF---------KDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 278 ~~~~~~f~---y~~~~~~~~L---------~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+|++|+ |+.. +.++| +++|++|++|+.++|+||+|||||||+++|.
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHH
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 88999999 8632 23455 9999999999999999999999999999985
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.90 E-value=2.1e-06 Score=87.47 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=22.1
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++|+| .+|++|++++|+||||||||||+++|.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 578888 799999999999999999999999884
No 249
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.88 E-value=2.6e-07 Score=100.11 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=41.5
Q ss_pred CccccEEEEeeEEeCCCCCCcccccceeee-----------------------ecCCCEEEEEccCCCCCccccccc
Q 040875 272 KFLGEVEFRNVVFAYPSRPETIIFKDFCLK-----------------------VPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 272 ~~~~~i~~~~~~f~y~~~~~~~~L~~isl~-----------------------i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
...+.|+++||++.|. |.++++++. +++|++++|+||+|||||||+++|
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHH
Confidence 3345799999999993 567777764 899999999999999999999976
No 250
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.88 E-value=3.3e-05 Score=83.96 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=30.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
-|+.+.--+++|+.+.|.||+|+||||++.-++.-..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566555689999999999999999999988776543
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.87 E-value=1.5e-05 Score=89.60 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR 752 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~ 752 (930)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999998899988776654
No 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.85 E-value=1.4e-06 Score=97.30 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=37.1
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCE--EEEEccCCCCCccccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNT--VALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~--v~ivG~sGsGKSTll~~ll~ 327 (930)
.+++++ ++.|++ .+ |+++||++++|+. ++||||+|||||||+++|.+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 355666 788853 34 9999999999999 99999999999999999853
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.84 E-value=4.4e-07 Score=99.25 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=36.7
Q ss_pred EEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 279 FRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 279 ~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++|++| | .++++++|+++++|+.++|+||+|||||||+++|.+
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455555 4 247999999999999999999999999999999853
No 254
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.83 E-value=2.7e-06 Score=86.46 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=34.0
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++++|++|.|+ .++|++ |++++|..++|+|++|||||||++.|.+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999995 257888 8999999999999999999999999864
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.82 E-value=3.8e-06 Score=87.07 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=22.1
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
....+++||++++|++++|+||+||||||+++.|.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999999999999999876
No 256
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.82 E-value=6e-06 Score=83.54 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=41.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHH
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLR 757 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 757 (930)
.++|+.++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 567899999999999999999999999998899998888776655543
No 257
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.79 E-value=4.6e-06 Score=97.68 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 687 LQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 687 ~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
++++..+|. ...+++++++++ +|+.+.|+||+|+|||||++++.+...+..|+|.++|
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344444442 234678888888 8999999999999999999999999988888887666
No 258
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.79 E-value=1.6e-06 Score=98.22 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=43.6
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++++|+++.|++ ...+|+++ |+|++||+++|+||+|||||||+++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Ia 178 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMA 178 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 45889999999963 35689999 999999999999999999999999874
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.76 E-value=2.5e-06 Score=92.67 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=47.2
Q ss_pred cccCccccEEEEeeEEeCCCCCCccccc--------------ceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 269 TLEKFLGEVEFRNVVFAYPSRPETIIFK--------------DFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 269 ~~~~~~~~i~~~~~~f~y~~~~~~~~L~--------------~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.|+...+.++|+|++|.||.. ...|+ |+++.+.+||.++|+||+|||||||++.|
T Consensus 126 ~pe~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 126 KPENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp CHHHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHH
T ss_pred ChhhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHH
Confidence 344445789999999999853 55788 89999999999999999999999999865
No 260
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.72 E-value=2.4e-06 Score=86.36 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI 751 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di 751 (930)
...|+|+|++||||||+.+.|.+. |-..+|.-++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 347999999999999999999985 7777776543
No 261
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=9.9e-05 Score=82.54 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=33.1
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEccCchhh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLM----VGRTSVVVAHRLSTI 886 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~----~~~TvI~IaHrl~ti 886 (930)
.+|.+|++||+... |.+....+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999987 7776666666664432 367888999998543
No 262
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.68 E-value=1.2e-05 Score=91.71 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=46.1
Q ss_pred CCCEEEeeccCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEccCch-hhhc-cCEEEE-EeCCEEEEecChh
Q 040875 842 NPAVLLLDEATSALDS-QSEKLVQEALERLM-VGRTSVVVAHRLS-TIQN-CDMIAV-LEQGRVVEEGSHE 907 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~-~te~~i~~~i~~~~-~~~TvI~IaHrl~-ti~~-~DrI~v-l~~G~ive~G~~~ 907 (930)
+|++|++||+..-.+. .+...+...+.+.. .++++|+.||+.. .+.. .+++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999987764 56666777777654 4788999999843 3222 233333 4668888777664
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=2.6e-05 Score=85.81 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
-+++|+.+.|.|++|||||||+..+..-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988774
No 264
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.66 E-value=9.9e-07 Score=95.73 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=43.0
Q ss_pred cccEEEEeeEEeCCCCCCcccccceeeee-------------------cCCCEEEEEccCCCCCcccccccc
Q 040875 274 LGEVEFRNVVFAYPSRPETIIFKDFCLKV-------------------PAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 274 ~~~i~~~~~~f~y~~~~~~~~L~~isl~i-------------------~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+.|+++|+++.|. ++++++|+.+ ++|++++|+||+|||||||++.|.
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999992 5899999998 899999999999999999999874
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=1.9e-05 Score=77.81 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR 752 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~ 752 (930)
++|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999876 88999997775
No 266
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.62 E-value=1.2e-06 Score=99.86 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=35.1
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|++|+| .++||++++|++++|+||+|||||||+++|.
T Consensus 118 mi~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 118 MKYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp HHHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHH
T ss_pred hhhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHh
Confidence 35556666655 2799999999999999999999999999874
No 267
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.58 E-value=5e-06 Score=91.26 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=42.6
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++.+++++.|.+ ...+|+++ |+|++||.++|+||+|||||||++.|.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~ 92 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMIC 92 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 5788999999963 35689999 999999999999999999999999764
No 268
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.57 E-value=1e-05 Score=80.06 Aligned_cols=42 Identities=31% Similarity=0.485 Sum_probs=35.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc--EEEECCccCCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKG--VVKIDGEDIRS 753 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G--~I~idG~di~~ 753 (930)
++|+.++|+|++||||||+++.|.+.+++ .| .|.+||.++++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998866 56 77788766543
No 269
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.48 E-value=2.4e-05 Score=88.87 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=55.7
Q ss_pred cccCCCCCCCChHHHHHHH--HHHHhcc---------------CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEE
Q 040875 816 TWCGDRGLQLSGGQKQRIA--IARAILK---------------NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVV 878 (930)
Q Consensus 816 t~vge~G~~LSgGQrQrla--LARALl~---------------~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~ 878 (930)
+........+||||+|-.- ||-|++. .-++++|||| +-+|.+.-+...+.++++ |.=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 3344445679999999533 3333221 1268999999 999999999888988876 788888
Q ss_pred EccCchhh-hccCEEEEEe
Q 040875 879 VAHRLSTI-QNCDMIAVLE 896 (930)
Q Consensus 879 IaHrl~ti-~~~DrI~vl~ 896 (930)
+|=. ++ ..+|.++.+-
T Consensus 448 atP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE--NISPERGTTYKLV 464 (483)
T ss_dssp EESS--SCCCSSSEEEECC
T ss_pred ECcc--hhhhccCceEEEE
Confidence 8877 55 4689998874
No 270
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=7.4e-05 Score=80.56 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=78.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE-CCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI-DGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKID 790 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i-dG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~ 790 (930)
++.+|+|||++|+|||||++.|.|.- +.+ .+.+ ....++..++++|++.-+. ..+.|+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~-------~iDTpG~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAI-------YVDTPGLHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEE-------EESSSSCCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEE-------EEECcCCCc
Confidence 34489999999999999999999852 222 1111 1122445678888763111 112222210
Q ss_pred HHHHHHHHHHhcchhHHhcCcccccccc--CCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCCCCCHHH-HHHHHH
Q 040875 791 ESEIIEAAKAANAHDFIAGLSEGYDTWC--GDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATSALDSQS-EKLVQE 865 (930)
Q Consensus 791 d~ei~~al~~~~l~~~i~~Lp~gldt~v--ge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTSaLD~~t-e~~i~~ 865 (930)
+ -...++..-.......+ ...|..+ -+... +|.|++ .+++++. ..|.|+++ .-+|... ...+.+
T Consensus 69 ~--~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 69 E--EKRAINRLMNKAASSSI-GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp H--HHHHHHHHHTCCTTSCC-CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred c--chhhHHHHHHHHHHHHH-hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 1 11122110000000111 1112111 12222 999987 4566665 67889988 5677765 445555
Q ss_pred HHHHHcC--C--CeEEEEccCchhhhc-cCEE
Q 040875 866 ALERLMV--G--RTSVVVAHRLSTIQN-CDMI 892 (930)
Q Consensus 866 ~i~~~~~--~--~TvI~IaHrl~ti~~-~DrI 892 (930)
.+.+..+ + .++.+.||.-+-+.. +|.|
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 6655432 3 356666777665543 4444
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.47 E-value=2.1e-05 Score=79.53 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.3
Q ss_pred eeeecCCCEEEEEccCCCCCccccccccc
Q 040875 299 CLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 299 sl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+++++|++++|+||+|||||||+++|.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 56788999999999999999999998853
No 272
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.44 E-value=0.00031 Score=75.49 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccCCCCCHHHH----------HHHHHHHHHHc-----CCCeEEEEccCchhh-----
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEATSALDSQSE----------KLVQEALERLM-----VGRTSVVVAHRLSTI----- 886 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaTSaLD~~te----------~~i~~~i~~~~-----~~~TvI~IaHrl~ti----- 886 (930)
++++++-.+++|...+|.+|++||+.+-.+.... ..+...+.... .+..+|..|++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 5777888888888889999999999887654321 12233333321 124567788886533
Q ss_pred hccCEEEEEe
Q 040875 887 QNCDMIAVLE 896 (930)
Q Consensus 887 ~~~DrI~vl~ 896 (930)
..+|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 3477665543
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=2.2e-05 Score=86.42 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=37.3
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhcccCCCCc
Q 040875 701 IIFKGFSINIEAEKS--TALVGQSGSGKSTIIGLIERFYDPLKG 742 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~~~~G 742 (930)
.+++.++..++.|+. +.+.||+|+||||+++++.+...+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 478899999999998 999999999999999999998766544
No 274
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.42 E-value=1.9e-05 Score=80.05 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.8
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++|+|+ ++|++++|+||+|||||||+++|.
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHH
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678885 899999999999999999999874
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.41 E-value=3e-05 Score=95.00 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=31.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
+.+++|+.+.|+||+|||||||+++|.+.+++. -+.++|
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~ 271 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLING 271 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEc
Confidence 468999999999999999999999999987542 244444
No 276
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.40 E-value=0.00056 Score=70.91 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPLKG 742 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~~G 742 (930)
+|+|+|++|+|||||++.|.|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987665544
No 277
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.39 E-value=6.2e-05 Score=85.82 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccC------------CCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCc
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYD------------PLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFA 774 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~------------~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~ 774 (930)
-+++|||++|+|||||++.|.|... +.+|.+.+||.++.-++....|+...+.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 3799999999999999999999753 678999999998766666666777777777776664
No 278
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.38 E-value=8.3e-05 Score=82.93 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=26.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPL 740 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~ 740 (930)
+++..+.|.||+|+|||||++.+.+..++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887654
No 279
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.38 E-value=1.2e-05 Score=89.99 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=33.7
Q ss_pred cccccceeeeecCCC--------------------EEEEEccCCCCCccccccccc
Q 040875 292 TIIFKDFCLKVPAGN--------------------TVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 292 ~~~L~~isl~i~~G~--------------------~v~ivG~sGsGKSTll~~ll~ 327 (930)
..+|+|+|+++++|+ .++|+||+|||||||+++|.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 468999999999999 999999999999999999965
No 280
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.34 E-value=0.00026 Score=88.15 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=37.3
Q ss_pred ccEEEEe-----eEEeCCCCCCcccccceeeeecC-------CCEEEEEccCCCCCcccccc
Q 040875 275 GEVEFRN-----VVFAYPSRPETIIFKDFCLKVPA-------GNTVALVGGSGSGKSTVVSA 324 (930)
Q Consensus 275 ~~i~~~~-----~~f~y~~~~~~~~L~~isl~i~~-------G~~v~ivG~sGsGKSTll~~ 324 (930)
..++++| +++.|+. +.++++|++|++++ |++++|+||+||||||+++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~ 808 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQ 808 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHH
Confidence 4699999 9998852 35789999999987 99999999999999999885
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.29 E-value=0.0003 Score=76.25 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=29.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r 735 (930)
.|+++.--+++|+.+.|.|++|+||||++.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666665689999999999999999999887764
No 282
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.29 E-value=4.8e-05 Score=76.55 Aligned_cols=56 Identities=14% Similarity=0.321 Sum_probs=37.5
Q ss_pred EEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----cc----CCCCcEEEECCc
Q 040875 691 HFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER----FY----DPLKGVVKIDGE 749 (930)
Q Consensus 691 sf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r----l~----~~~~G~I~idG~ 749 (930)
+++||+- ..+++++|++.+++ +|+++|++|+|||||++.+.+ .+ .++.+.+.++|.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 4567643 35889999998877 689999999999999999986 22 234456666664
No 283
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.29 E-value=4.7e-05 Score=85.45 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=34.0
Q ss_pred ccEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 275 GEVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+.|+++|++++|+. .++++|+||+| +|+||+|||||||++.|.+
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhC
Confidence 45899999999963 46899999998 9999999999999999863
No 284
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.28 E-value=2.9e-05 Score=85.31 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=45.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR 752 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~ 752 (930)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3778999999999999999999999999999999999888888877666554
No 285
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=7.7e-05 Score=82.13 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=37.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY 754 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 754 (930)
+++.+|+|+|++|||||||++.|.+...+.+|+|.+.+.|..+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 35678999999999999999999999999999999988876543
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.26 E-value=4.4e-05 Score=79.78 Aligned_cols=43 Identities=35% Similarity=0.658 Sum_probs=32.5
Q ss_pred EEEEeeEEeCCCCCCcccccceee--eecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCL--KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl--~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++++++.++. |+++ + .|++|++++|+||+|||||||++.|.
T Consensus 7 ~~~~~i~tg~~~------lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 7 QPVRRVKSGIPG------FDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp -CCCEECCSCTT------TGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred cccceeecCCHh------HHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 455666666652 3333 2 78999999999999999999999764
No 287
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.25 E-value=0.0012 Score=69.28 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=29.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGED 750 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~d 750 (930)
++++++..++| +.|+||+|+||||+++++.+..... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44445555544 9999999999999999999887532 35555544
No 288
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.00015 Score=75.08 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCC-cccHHHHhhcCCCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALF-AVTVRENITYGASD 787 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF-~gTIreNl~~g~~~ 787 (930)
.+.+|+.+.++|+|||||||++.+...-.....|. ...+.++.|.|... .-++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34579999999999999999877653211111111 23567788888633 33566666321110
Q ss_pred CCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCC---CChHHHHHHHHHHHhccCCCEEEeeccCC-CCCHHHHHHH
Q 040875 788 KIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQ---LSGGQKQRIAIARAILKNPAVLLLDEATS-ALDSQSEKLV 863 (930)
Q Consensus 788 ~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~---LSgGQrQrlaLARALl~~~~ILiLDEaTS-aLD~~te~~i 863 (930)
... ..++. ....+......+.. -+.|.-.+. .+.-+++-+++|+||+-. ++|.......
T Consensus 136 ~~~--------~~~g~-------~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 136 EPG--------KSCGY-------SVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp CTT--------SSEEE-------EETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred ccC--------ceEEE-------eechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHH
Confidence 000 00000 00011111111111 234554444 345689999999999976 5666655334
Q ss_pred HHHHHHHcCCC
Q 040875 864 QEALERLMVGR 874 (930)
Q Consensus 864 ~~~i~~~~~~~ 874 (930)
.+.+.+...++
T Consensus 199 l~~i~~~~~~~ 209 (235)
T 3llm_A 199 LRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHCTTS
T ss_pred HHHHHhhCCCC
Confidence 44444444443
No 289
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.23 E-value=0.0011 Score=72.77 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=29.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-CcEEEECC
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPL-KGVVKIDG 748 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~-~G~I~idG 748 (930)
+++|+.+.|.|++|+|||||+..+..-.... ...+++|.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7899999999999999999988776543222 22344554
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.23 E-value=6.3e-05 Score=82.71 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=37.2
Q ss_pred EeeEEeCCCCCCcccccceee-------eecCCCEEEEEccCCCCCcccccccc
Q 040875 280 RNVVFAYPSRPETIIFKDFCL-------KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 280 ~~~~f~y~~~~~~~~L~~isl-------~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++.|... ..+.|+++.+ .+++|++++|+||+||||||++++++
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567777543 4567888776 77889999999999999999999885
No 291
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.23 E-value=0.0018 Score=72.59 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=45.0
Q ss_pred cCCCEEEeeccCCCCC---HHHHHHHHHHHHHHcC-CCeEEEEccCchhh-------------hccCEEEEEeCC
Q 040875 841 KNPAVLLLDEATSALD---SQSEKLVQEALERLMV-GRTSVVVAHRLSTI-------------QNCDMIAVLEQG 898 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD---~~te~~i~~~i~~~~~-~~TvI~IaHrl~ti-------------~~~DrI~vl~~G 898 (930)
.+|.++++||+=.-++ +.....+.+.+++.++ |..++++||+++-+ .+|+..++|...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 4578999999988885 5567778888888765 88999999999755 346777777543
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.21 E-value=5.8e-05 Score=76.84 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=38.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc--EEEECCccC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG--VVKIDGEDI 751 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G--~I~idG~di 751 (930)
+.+++|..+.|+|++||||||+.+.|.+.++|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999987888 888886543
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.20 E-value=5.6e-05 Score=76.17 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.2
Q ss_pred cCCCEEEEEccCCCCCcccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|++++|+||||||||||+++|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999985
No 294
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.00013 Score=75.16 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=32.9
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 703 FKGFSINIE---AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 703 L~~vsl~i~---~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
|.++|+++. +|..++|.|++||||||+++.|...+++ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 566666665 8999999999999999999999999987 66665443
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.18 E-value=0.00014 Score=71.15 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGE 749 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~ 749 (930)
.|+.++|+|++||||||+++.|.+.+.+ +.+|+-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d 36 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSD 36 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEecc
Confidence 4788999999999999999999998754 667753
No 296
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.16 E-value=0.00051 Score=84.48 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred ccEEEEeeEEeCCCC--CCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 275 GEVEFRNVVFAYPSR--PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~--~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.++++++..-+-.. .+..+++|++|++++|++++|+||+||||||+++.+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 468888877654321 235789999999999999999999999999999864
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.15 E-value=0.00011 Score=72.79 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=27.3
Q ss_pred cceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 296 KDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 296 ~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+++++++.+| +++|+||+|||||||+.+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai 46 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAI 46 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 6789999999 9999999999999999998
No 298
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.15 E-value=6.8e-05 Score=80.70 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=31.7
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|+++++.+++|++++|+||+|||||||+..|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999998764
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.14 E-value=8.4e-05 Score=76.02 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=22.6
Q ss_pred eecCCCEEEEEccCCCCCccccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
..++|++++|+||||||||||+++|.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 568999999999999999999999854
No 300
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.14 E-value=8e-05 Score=80.08 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.3
Q ss_pred cceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 296 KDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 296 ~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+++||++++|+.+++|||+||||||+++.|.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999999999999999873
No 301
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.13 E-value=9.3e-05 Score=75.12 Aligned_cols=25 Identities=44% Similarity=0.578 Sum_probs=22.9
Q ss_pred ecCCCEEEEEccCCCCCcccccccc
Q 040875 302 VPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 302 i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++|++++|+||||||||||+++|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999999874
No 302
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=5.1e-05 Score=76.58 Aligned_cols=36 Identities=31% Similarity=0.209 Sum_probs=31.7
Q ss_pred CcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 291 ETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 291 ~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+....+..++..++|++++|+||+||||||++++|.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445678889999999999999999999999999873
No 303
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.12 E-value=8e-05 Score=84.32 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=30.2
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
..++++||++++| +++|+||+|||||||+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 3689999999999 9999999999999999987
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.11 E-value=0.0001 Score=74.61 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=36.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CCcEE----------EECCccCCCCCHHHhhc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDP-LKGVV----------KIDGEDIRSYHLRSLRR 761 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~-~~G~I----------~idG~di~~~~~~~lR~ 761 (930)
...+|..++|+|+|||||||+.+.|...++. ..+.+ .+||.|..-++.+.++.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 3468999999999999999999999987742 11111 23666665556655553
No 305
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.11 E-value=0.00025 Score=70.72 Aligned_cols=33 Identities=12% Similarity=0.375 Sum_probs=20.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r 735 (930)
++++++++.++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999998777 899999999999999999987
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.10 E-value=9.8e-05 Score=74.64 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=23.3
Q ss_pred eeecCCCEEEEEccCCCCCccccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++|++|++++|+||+||||||+++.|..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998843
No 307
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.10 E-value=3.8e-05 Score=78.96 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc---ccCCCCcEE--------EECCccCCCCC-HHHhhcceEEEc------cCCCCCc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIER---FYDPLKGVV--------KIDGEDIRSYH-LRSLRRHVALVS------QEPALFA 774 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~r---l~~~~~G~I--------~idG~di~~~~-~~~lR~~i~~V~------Q~p~LF~ 774 (930)
.-.++|+|++||||||+.+.|.+ +...+.|.+ .-.|+|..+.. +.++.+++.+.+ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 45899999999999999999984 434455655 23566666543 556666666666 3345555
Q ss_pred ccHHHHh
Q 040875 775 VTVRENI 781 (930)
Q Consensus 775 gTIreNl 781 (930)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5565555
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.08 E-value=6e-05 Score=82.53 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=39.2
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++|+++.|. ...+|+++|+++++|++++|+||+|||||||+++|.
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555666663 245899999999999999999999999999999985
No 309
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.05 E-value=0.0003 Score=68.81 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++|.+|+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00012 Score=72.37 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.5
Q ss_pred cCCCEEEEEccCCCCCccccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
.+|++++|+||||||||||+++|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999999853
No 311
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.04 E-value=0.00071 Score=73.68 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
++..+.|.||+|+|||||++.+.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999987654
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.03 E-value=0.00011 Score=83.08 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.3
Q ss_pred ccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 295 FKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 295 L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
-+++||++++|++++||||+|||||||++.|.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHH
Confidence 36899999999999999999999999999873
No 313
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.01 E-value=0.0006 Score=68.58 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCC
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPL 740 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~ 740 (930)
..+.|.|++|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 314
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00014 Score=72.45 Aligned_cols=26 Identities=42% Similarity=0.521 Sum_probs=23.5
Q ss_pred eecCCCEEEEEccCCCCCcccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+++|++++|+||+||||||+++.|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999999884
No 315
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.93 E-value=0.00055 Score=78.34 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhccCCCEEEeeccC-CCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 040875 827 GGQKQRIAIARAILKNPAVLLLDEAT-SALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886 (930)
Q Consensus 827 gGQrQrlaLARALl~~~~ILiLDEaT-SaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti 886 (930)
+.|++....++..+++++++|+.... .++... +..+.+.+++ .++.+|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 35888888999999999988765544 444444 4456666654 488999999988765
No 316
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00016 Score=79.28 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.1
Q ss_pred cceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 296 KDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 296 ~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+||++++|+++++|||+||||||+++.|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHH
Confidence 3588999999999999999999999999873
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.92 E-value=0.0001 Score=81.43 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.4
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++|+++|+.+++|+.++|+||+|||||||+++|.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999874
No 318
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.0019 Score=68.67 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++++..+-|.||+|+||||+++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
No 319
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.91 E-value=0.0011 Score=69.08 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHhc---cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcC----CCeEEEEccCchh
Q 040875 826 SGGQKQRIAIARAIL---KNPAVLLLDEATSALDSQSEKLVQEALERLMV----GRTSVVVAHRLST 885 (930)
Q Consensus 826 SgGQrQrlaLARALl---~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~----~~TvI~IaHrl~t 885 (930)
+.||+.+-.+.|++. ++++++|+--..+.++. .+..+.+.+.+.+. ++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344555666777774 88887775544445554 44455566666542 6799999997654
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.90 E-value=0.00018 Score=73.96 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=24.5
Q ss_pred eecCCCEEEEEccCCCCCcccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+++|++++|+||+|||||||++.|.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999999999875
No 321
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.89 E-value=0.00019 Score=75.27 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=23.1
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
...+++.+ ++|+.++|+||+||||||++++|.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 33444443 789999999999999999999863
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.85 E-value=0.0002 Score=72.76 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.6
Q ss_pred ecCCCEEEEEccCCCCCcccccccc
Q 040875 302 VPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 302 i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++|++++|+||+|||||||++.|.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999999874
No 323
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.83 E-value=0.00088 Score=69.03 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
No 324
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.82 E-value=0.002 Score=69.98 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~r 735 (930)
-+++|+.+.|.|++|+||||++..+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987764
No 325
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.81 E-value=0.00025 Score=70.78 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=23.4
Q ss_pred eeeecCCCEEEEEccCCCCCccccccccc
Q 040875 299 CLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 299 sl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
|+...+|++++|+||||||||||+++|+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence 34445899999999999999999999863
No 326
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.81 E-value=0.00021 Score=76.59 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=43.7
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCC
Q 040875 704 KG-FSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSY 754 (930)
Q Consensus 704 ~~-vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 754 (930)
++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|+|.+.+.|...-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 34 677766 999999999999999999999999998899999988887654
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.81 E-value=0.00011 Score=84.86 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=32.3
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+++++++.+++|+.++|+||+||||||++++|+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999999999999999999985
No 328
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.81 E-value=0.00062 Score=70.05 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=33.7
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti 886 (930)
.++.++++||+-. +|.+....+.+.+.+...+..+|++|++.+.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999877 67777777777776544567788888887654
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=7.6e-05 Score=75.23 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=38.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc------cCCCCcEEEECCc--cCCCCCH--------HHhhcceEEEccCCCCCcccHH
Q 040875 715 STALVGQSGSGKSTIIGLIERF------YDPLKGVVKIDGE--DIRSYHL--------RSLRRHVALVSQEPALFAVTVR 778 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl------~~~~~G~I~idG~--di~~~~~--------~~lR~~i~~V~Q~p~LF~gTIr 778 (930)
.++|+|++||||||+.+.|.+. .+|..|...++.. |-...+. ..++.....+.|+++++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222211 1000110 0023333556777788888888
Q ss_pred HHhhcC
Q 040875 779 ENITYG 784 (930)
Q Consensus 779 eNl~~g 784 (930)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 887653
No 330
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.74 E-value=0.00026 Score=86.77 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred ccEEEEeeEEeCC----CCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 275 GEVEFRNVVFAYP----SRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 275 ~~i~~~~~~f~y~----~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.++++++..-.- ...+..+++|+||++++|++++|+||+||||||+++.+
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i 693 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQV 693 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHH
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHH
Confidence 3578877553210 11246789999999999999999999999999999864
No 331
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.74 E-value=0.00076 Score=64.32 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIE 734 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~ 734 (930)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445666655 88999999999999999986
No 332
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.72 E-value=0.0036 Score=67.36 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPLKGV 743 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~~G~ 743 (930)
..+.|+||+|+||||+++.+.+...+.+|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 468899999999999999999988776654
No 333
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.70 E-value=0.0012 Score=79.78 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.2
Q ss_pred cccEEEEeeEEeCCCC--CCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 274 LGEVEFRNVVFAYPSR--PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 274 ~~~i~~~~~~f~y~~~--~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++.++++++. .|-- .+.++++|+||+ |++++|+||+||||||+++.+
T Consensus 548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~i 596 (765)
T 1ewq_A 548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQT 596 (765)
T ss_dssp SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHH
T ss_pred CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHH
Confidence 4568899883 3421 246789999999 999999999999999999864
No 334
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.70 E-value=5.8e-05 Score=84.78 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.1
Q ss_pred cccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 294 IFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 294 ~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|+++ + .++|++++|+||+||||||++++++
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHH
Confidence 45555 3 3789999999999999999999875
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.00035 Score=69.34 Aligned_cols=40 Identities=33% Similarity=0.339 Sum_probs=33.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE-EECC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV-KIDG 748 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I-~idG 748 (930)
..++|..+.|+|.+||||||+.+.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988777765 4665
No 336
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.65 E-value=0.00048 Score=83.61 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=38.0
Q ss_pred ccEEEEeeEEeCCCC----CCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 275 GEVEFRNVVFAYPSR----PETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 275 ~~i~~~~~~f~y~~~----~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.++++++.. |-- .+..+++|+||+ ++|++++|+||+||||||+++.+
T Consensus 576 ~~i~i~~~rH--P~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~i 627 (800)
T 1wb9_A 576 PGIRITEGRH--PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQT 627 (800)
T ss_dssp SCEEEEEECC--TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEeccc--cEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHH
Confidence 3577777542 210 245789999999 99999999999999999999864
No 337
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.00029 Score=72.39 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.1
Q ss_pred cccccceee-eecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCL-KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl-~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+.|+++.. .+++|++++|+||+|||||||+..+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 457899987 89999999999999999999988753
No 338
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.63 E-value=0.00041 Score=70.34 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.9
Q ss_pred cCCCEEEEEccCCCCCccccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
++|++++|+||+||||||+++.|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999998853
No 339
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.62 E-value=0.00083 Score=74.33 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=34.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcc-----------cCCCCcEEEECCc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERF-----------YDPLKGVVKIDGE 749 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl-----------~~~~~G~I~idG~ 749 (930)
.+..|.+++|||++|+|||||++.|.+. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 6788899988774
No 340
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.60 E-value=0.00036 Score=75.08 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=20.5
Q ss_pred EeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 280 RNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 280 ~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|++..|. ...++++++|+| +|+||+|+|||||++.|.
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHH
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHh
Confidence 36777785 346899999998 999999999999999865
No 341
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.58 E-value=0.0002 Score=79.22 Aligned_cols=58 Identities=24% Similarity=0.246 Sum_probs=36.2
Q ss_pred CccEEEEEEEEEcCCCCCccceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 682 TGHIELQYVHFAYPARPDVIIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 682 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
.+.|.++|++..|.. ..++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 467899999888853 34789999876 99999999999999999987666555554444
No 342
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.57 E-value=0.00045 Score=69.47 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=21.7
Q ss_pred eeecCCCEEEEEccCCCCCcccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++.++|++++|+||+||||||++++|.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 556789999999999999999999874
No 343
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.56 E-value=0.0055 Score=65.82 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=30.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
+.++++..+.|.||+|+||||+++++.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 3567899999999999999999999998763 34444443
No 344
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.00095 Score=66.09 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=26.7
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 705 GFSINIEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 705 ~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56888889999999999999999999999876
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.51 E-value=0.00097 Score=73.92 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=43.4
Q ss_pred HHHHHHHhccCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhhhccCEEE
Q 040875 832 RIAIARAILKNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTIQNCDMIA 893 (930)
Q Consensus 832 rlaLARALl~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~ 893 (930)
+.+|+++|..+|+++++|||| |.++ +..+++....|.++++++|..+....+||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 469999999999999999999 7765 3344555556899999999877544566653
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.50 E-value=4.7e-05 Score=84.59 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHHHHhc-cCCCEEEeec---cC------CCCCHHHHHHHHHHHHHHcC--CCeEEEEccCchhhhccCE
Q 040875 824 QLSGGQKQRIAIARAIL-KNPAVLLLDE---AT------SALDSQSEKLVQEALERLMV--GRTSVVVAHRLSTIQNCDM 891 (930)
Q Consensus 824 ~LSgGQrQrlaLARALl-~~~~ILiLDE---aT------SaLD~~te~~i~~~i~~~~~--~~TvI~IaHrl~ti~~~Dr 891 (930)
.+|+|++|+..+++++. .+|++++||| |+ +++|.+....+.+.+++..+ +.|+|+++|.-..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 46778888998998875 6999999999 54 68999999999999977654 8999999986433344777
Q ss_pred EEEEeCCEEEEecChhHHhc
Q 040875 892 IAVLEQGRVVEEGSHESLLA 911 (930)
Q Consensus 892 I~vl~~G~ive~G~~~eLl~ 911 (930)
+.++++ +.+.|+++||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 777765 667788888854
No 347
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.50 E-value=0.0072 Score=57.07 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
+.+.-|-|.|++|+|||++++++......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34566899999999999999999876543
No 348
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.50 E-value=0.00029 Score=74.70 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=30.0
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+++++++++++| ++++||+|||||||+++|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHH
Confidence 34789999999999 9999999999999999874
No 349
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0011 Score=72.96 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchhh
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLSTI 886 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~ti 886 (930)
+++|+++|| .-.++.+....+.+.+++...+..+|+++++.+.+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 56788888878888887765556677788777643
No 350
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.48 E-value=0.00049 Score=68.36 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.3
Q ss_pred CCEEEEEccCCCCCcccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~ll 326 (930)
|+.++|+||||||||||+++|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999885
No 351
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.46 E-value=0.002 Score=62.35 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccc
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 352
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.44 E-value=0.00099 Score=66.98 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI 751 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di 751 (930)
...++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998876 5567776544
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.00081 Score=70.42 Aligned_cols=42 Identities=33% Similarity=0.528 Sum_probs=34.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCC
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIR 752 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~ 752 (930)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 455678899999999999999999998875 356888886553
No 354
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.43 E-value=0.00075 Score=74.12 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=29.7
Q ss_pred cccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 294 IFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 294 ~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++++++++| +++|+||+||||||++.+|.
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHH
Confidence 478999999999 99999999999999999983
No 355
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.42 E-value=0.00028 Score=75.67 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=25.5
Q ss_pred eeecCCCEEEEEccCCCCCccccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+++.+|++++|+||||+|||||+++|.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 5678999999999999999999999863
No 356
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.40 E-value=0.0014 Score=64.10 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCcc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPL---KGVVKIDGED 750 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~---~G~I~idG~d 750 (930)
-..++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999999876543 3777877654
No 357
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.36 E-value=0.00097 Score=63.57 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.2
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+|+++ +|+.++|+||+|||||||++++.
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHH
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 346666 89999999999999999999874
No 358
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.35 E-value=0.0006 Score=67.23 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.2
Q ss_pred eeeecCCCEEEEEccCCCCCcccccccc
Q 040875 299 CLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 299 sl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
|+++++|+.++|+||+|||||||++++.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 5677899999999999999999999863
No 359
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.00043 Score=72.50 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=35.7
Q ss_pred EEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 278 EFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 278 ~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+++++...|. ...+++++++++++| ++|+||+|||||||++++.
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHH
Confidence 4556666553 235799999999999 9999999999999999863
No 360
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.33 E-value=0.0016 Score=64.23 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 040875 714 KSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl 736 (930)
-+++++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999973
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.33 E-value=0.00082 Score=74.37 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=27.7
Q ss_pred ccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 295 FKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 295 L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++++++++++| +++|+||+|||||||+.+|
T Consensus 14 ~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHH
Confidence 56889999999 8889999999999999987
No 362
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.33 E-value=0.004 Score=70.86 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=68.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCc-EE-EECCccCCCCCHHHhhcceE----EEccCCCCCcc
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERFYDPLKG-VV-KIDGEDIRSYHLRSLRRHVA----LVSQEPALFAV 775 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G-~I-~idG~di~~~~~~~lR~~i~----~V~Q~p~LF~g 775 (930)
-|+.+.--+++|+.+.|.||+|+||||++.-++.-.....| .+ +++. +.+.+++..++- -++.+.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~----- 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR----- 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-----
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 45665545899999999999999999998887765533222 23 3333 244455444321 111111
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHhcchhHHhcCccccccccCCCCCCCChHHHHHHHHHHHhc--cCCCEEEeeccCC
Q 040875 776 TVRENITYGASDKIDESEIIEAAKAANAHDFIAGLSEGYDTWCGDRGLQLSGGQKQRIAIARAIL--KNPAVLLLDEATS 853 (930)
Q Consensus 776 TIreNl~~g~~~~~~d~ei~~al~~~~l~~~i~~Lp~gldt~vge~G~~LSgGQrQrlaLARALl--~~~~ILiLDEaTS 853 (930)
++. +..++++..+..+.++ .+...|--. .+ ...+|..| ..+.+|.+. .+++++|+|..+.
T Consensus 260 -l~~-------g~l~~~~~~~~~~a~~---~l~~~~l~i----~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 260 -VRL-------GQLTDRDFSRLVDVAS---RLSEAPIYI----DD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp -CCG-------GGCCHHHHHHHHHHHH---HHHTSCEEE----EC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred -HhC-------CCCCHHHHHHHHHHHH---HHhcCCEEE----EC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 110 1234555333322221 122222111 11 12456554 456667666 4789999999876
Q ss_pred CCC
Q 040875 854 ALD 856 (930)
Q Consensus 854 aLD 856 (930)
-.+
T Consensus 322 ~~~ 324 (444)
T 2q6t_A 322 MSG 324 (444)
T ss_dssp CBC
T ss_pred cCC
Confidence 554
No 363
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.0013 Score=71.41 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=26.5
Q ss_pred ceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 297 DFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 297 ~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++++.+| +++|+||+|||||||+.+|.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 578888999 99999999999999999983
No 364
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.27 E-value=0.00079 Score=75.43 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=30.6
Q ss_pred ccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 295 FKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 295 L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
-++++|+++.|+.++|||++|||||||+++|..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 468999999999999999999999999999863
No 365
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.26 E-value=0.00021 Score=84.62 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=27.1
Q ss_pred cEEEEeeEEeCCCCCCcccccce----------eeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDF----------CLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~i----------sl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|+++.|+.. ..+.|+.+ ++++|. ++||||+|||||||+++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHH
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHh
Confidence 47899999999632 23344433 467765 9999999999999999984
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.25 E-value=0.00078 Score=69.41 Aligned_cols=30 Identities=27% Similarity=0.206 Sum_probs=25.8
Q ss_pred eeeecCCCEEEEEccCCCCCcccccccccc
Q 040875 299 CLKVPAGNTVALVGGSGSGKSTVVSASLED 328 (930)
Q Consensus 299 sl~i~~G~~v~ivG~sGsGKSTll~~ll~~ 328 (930)
+.+.++|++++|+|++||||||++++|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999999998644
No 367
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.25 E-value=0.0001 Score=75.50 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=30.9
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|+...|. . ++++++ ++++|+||+|||||||+.+|.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHh
Confidence 477888765442 1 466666 899999999999999999873
No 368
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.25 E-value=0.00051 Score=75.09 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.7
Q ss_pred cccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 294 IFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 294 ~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
-++++++.+ +|++++|+||+|||||||+++|.+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhc
Confidence 477888754 799999999999999999999864
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.23 E-value=0.00085 Score=67.79 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=24.3
Q ss_pred eeecCCCEEEEEccCCCCCcccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
=++++|++++|+|++||||||+++.|.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 467789999999999999999999874
No 370
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.017 Score=64.68 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKI 746 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~i 746 (930)
++..++++|++|+||||++..|...+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45689999999999999999999888765445543
No 371
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.22 E-value=0.00058 Score=72.59 Aligned_cols=43 Identities=28% Similarity=0.496 Sum_probs=34.7
Q ss_pred EEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 279 FRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 279 ~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++...|. ...+++++++++++| ++|+||+|||||||+++|.
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHH
Confidence 445555553 235789999999999 9999999999999999874
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.20 E-value=0.001 Score=71.36 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.3
Q ss_pred CCCEEEEEccCCCCCcccccccc
Q 040875 304 AGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+|++++|+||+||||||+++.|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 69999999999999999999873
No 373
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.19 E-value=0.00078 Score=72.46 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.6
Q ss_pred eeecCCCEEEEEccCCCCCcccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+++.+|++++++||||||||||+++|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 456789999999999999999999985
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.18 E-value=0.0005 Score=74.18 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.7
Q ss_pred cccccceeeeecCCC------EEEEEccCCCCCccccccc
Q 040875 292 TIIFKDFCLKVPAGN------TVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 292 ~~~L~~isl~i~~G~------~v~ivG~sGsGKSTll~~l 325 (930)
.+.|++++..+.+++ +++|+||+||||||++++|
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L 112 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVL 112 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHH
Confidence 456888888888777 8999999999999999987
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.17 E-value=0.0011 Score=65.64 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.1
Q ss_pred ceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 297 DFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 297 ~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|++.++|..++|+|++||||||+.+.|.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999999998763
No 376
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.00092 Score=66.47 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.8
Q ss_pred CCEEEEEccCCCCCcccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~ll 326 (930)
|+.++|+||+|||||||++.|.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHH
Confidence 7889999999999999999874
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.16 E-value=0.001 Score=65.10 Aligned_cols=24 Identities=42% Similarity=0.457 Sum_probs=21.7
Q ss_pred cCCCEEEEEccCCCCCcccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|++++|+||+||||||+++.|.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 469999999999999999999863
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.15 E-value=0.0014 Score=62.57 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=23.0
Q ss_pred ceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 297 DFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 297 ~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+..+++.+| +++|+||.||||||++.||
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHH
Confidence 344555555 8999999999999999998
No 379
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.15 E-value=0.013 Score=64.68 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=31.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDI 751 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di 751 (930)
.+|..+-|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45778999999999999999999988764444555555443
No 380
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.14 E-value=0.0024 Score=70.99 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999988764
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.12 E-value=0.0023 Score=63.24 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=34.4
Q ss_pred EEEEcCCCCcHHHHHHHHhccc-------------CCCCcEEEECCccCCCCCHHHhhcc
Q 040875 716 TALVGQSGSGKSTIIGLIERFY-------------DPLKGVVKIDGEDIRSYHLRSLRRH 762 (930)
Q Consensus 716 vaIVG~sGsGKSTL~~lL~rl~-------------~~~~G~I~idG~di~~~~~~~lR~~ 762 (930)
+.|+|||||||+||++.|..-+ +|..|+ +||+|..=++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 7899999999999999987543 345676 48988877777766543
No 382
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.08 E-value=0.027 Score=58.63 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+..-+.|.||+|+||||+++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34558899999999999999998755
No 383
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.05 E-value=0.0029 Score=62.39 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
+|+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987543
No 384
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.99 E-value=0.0013 Score=64.12 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred CCCEEEEEccCCCCCccccccc
Q 040875 304 AGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~l 325 (930)
.|+.++|+||+||||||+++.|
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4788999999999999999976
No 385
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.98 E-value=0.019 Score=63.05 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+++|+.+.|.|++|+|||||+..+..-
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999998776543
No 386
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.96 E-value=0.025 Score=62.21 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++...+.|.||+|+||||+++++.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 387
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.96 E-value=0.0043 Score=66.23 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=36.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhc----ccCCCCcEEEECC
Q 040875 701 IIFKGFSINIEAEKSTALVGQSGSGKSTIIGLIER----FYDPLKGVVKIDG 748 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~r----l~~~~~G~I~idG 748 (930)
..+++..+.+ .|.-++|+|+||+||||++..|.+ +...+...|...|
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4678888888 889999999999999999999987 4444444444433
No 388
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.95 E-value=0.0035 Score=62.95 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040875 715 STALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r 735 (930)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 389
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.95 E-value=0.0023 Score=70.51 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=42.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccCCCCCHHHhhcceEEEccCCCCCcccHHHHhhcCCCCCCCHHHH
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPLKGVVKIDGEDIRSYHLRSLRRHVALVSQEPALFAVTVRENITYGASDKIDESEI 794 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~LF~gTIreNl~~g~~~~~~d~ei 794 (930)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+... .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999874 2 22222222 666666443 3566788
Q ss_pred HHHHHHhcchh
Q 040875 795 IEAAKAANAHD 805 (930)
Q Consensus 795 ~~al~~~~l~~ 805 (930)
+.+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887765
No 390
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.92 E-value=0.0013 Score=65.30 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.2
Q ss_pred CCEEEEEccCCCCCcccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~ll 326 (930)
|++++|+||+||||||+++.|.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 6889999999999999999874
No 391
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.91 E-value=0.00087 Score=74.17 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=26.2
Q ss_pred cccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 292 TIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 292 ~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
..+|+++++++| .++|||++|||||||+++|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence 457999999998 999999999999999999865
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.91 E-value=0.0016 Score=67.06 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=22.3
Q ss_pred ccceeeeec---CCCEEEEEccCCCCCccccccc
Q 040875 295 FKDFCLKVP---AGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 295 L~~isl~i~---~G~~v~ivG~sGsGKSTll~~l 325 (930)
|.+.|++++ +|.+++|.||+||||||+++.|
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l 46 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEV 46 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHH
Confidence 555666655 8999999999999999999987
No 393
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.90 E-value=0.0013 Score=70.77 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=24.2
Q ss_pred eeecCCCEEEEEccCCCCCcccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+++.+|++++++||||||||||+++|.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 355679999999999999999999986
No 394
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.89 E-value=0.0016 Score=64.07 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.3
Q ss_pred EEEEEccCCCCCcccccccc
Q 040875 307 TVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 307 ~v~ivG~sGsGKSTll~~ll 326 (930)
.++|+||+|||||||+++|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 395
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.87 E-value=0.0011 Score=67.42 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=29.2
Q ss_pred ccccceee-eecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCL-KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl-~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.|+++.. .+++|++++|+||+||||||++..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 46777765 79999999999999999999988654
No 396
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.87 E-value=0.0042 Score=62.48 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=23.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 040875 704 KGFSINIEAEKSTALVGQSGSGKSTIIGLIE 734 (930)
Q Consensus 704 ~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~ 734 (930)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445566554 88999999999999999874
No 397
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.86 E-value=0.0017 Score=65.33 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.1
Q ss_pred eecCCCEEEEEccCCCCCcccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++|++++|+|++||||||+++.|.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999999874
No 398
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.86 E-value=0.0085 Score=63.96 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 040875 708 INIEAEKSTALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 708 l~i~~Ge~vaIVG~sGsGKSTL~~lL~r 735 (930)
--+++|..+.|.||+|+|||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688899999999999999999998874
No 399
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.0059 Score=60.19 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-c----cCCCCc----EEEECCcc
Q 040875 715 STALVGQSGSGKSTIIGLIER-F----YDPLKG----VVKIDGED 750 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r-l----~~~~~G----~I~idG~d 750 (930)
+|+|+|++|+|||||++.+.+ - +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 799999999999999976554 3 556666 66667643
No 400
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.82 E-value=0.0059 Score=66.78 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------ccCCCCcEEEECC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIER-----------FYDPLKGVVKIDG 748 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~r-----------l~~~~~G~I~idG 748 (930)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567888888776
No 401
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.82 E-value=0.0017 Score=65.36 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.6
Q ss_pred ecCCCEEEEEccCCCCCcccccccc
Q 040875 302 VPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 302 i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+|.+++|+|||||||||+.+.|.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999999874
No 402
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.81 E-value=0.0022 Score=72.76 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=32.7
Q ss_pred cEEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 276 EVEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 276 ~i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++|+ .+|.. . . ++++++|++++|+||+|||||||+.+|.
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAIS 47 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 4778887 56632 1 1 2557789999999999999999999984
No 403
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.001 Score=64.91 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.2
Q ss_pred CEEEEEccCCCCCcccccccc
Q 040875 306 NTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 306 ~~v~ivG~sGsGKSTll~~ll 326 (930)
+.++|||+||||||||+++|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999874
No 404
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.76 E-value=0.002 Score=69.94 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.3
Q ss_pred eecCCCEEEEEccCCCCCcccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++|++++++||+||||||+++.|.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999999873
No 405
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.71 E-value=0.012 Score=59.91 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=34.3
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccC-----------chhhhccCEEEEEe
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHR-----------LSTIQNCDMIAVLE 896 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHr-----------l~ti~~~DrI~vl~ 896 (930)
.+++++++||+-- ++.+.-..+ +.+.+ .+.+||++-|+ .+.+..||+|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999974 665422222 22333 38999999993 23345699998863
No 406
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.71 E-value=0.0014 Score=72.04 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.6
Q ss_pred ccccce-eeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDF-CLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~i-sl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
+.|+++ +..+++|++++|+||+|||||||+..+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 356665 6899999999999999999999998764
No 407
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.70 E-value=0.0021 Score=69.58 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=27.6
Q ss_pred ccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 295 FKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 295 L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++++||++++|+.++|+||+||||||++..|
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHH
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4678899999999999999999999998865
No 408
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.65 E-value=0.0024 Score=66.34 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCCEEEEEccCCCCCcccccccc
Q 040875 304 AGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++++++|+||+||||||+++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999863
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.0026 Score=65.68 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=24.5
Q ss_pred eecCCCEEEEEccCCCCCccccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
-+++|++++|+||+|||||||+..+..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999999987753
No 410
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.63 E-value=0.073 Score=56.92 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
+..+-|.||+|+||||+++.+.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999998887663
No 411
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0046 Score=60.99 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 412
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.0014 Score=70.98 Aligned_cols=37 Identities=32% Similarity=0.385 Sum_probs=33.4
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhccc
Q 040875 701 IIFKGFSINIEAEKS--TALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 701 ~vL~~vsl~i~~Ge~--vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367889999999999 9999999999999999998864
No 413
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.58 E-value=0.0024 Score=67.38 Aligned_cols=20 Identities=45% Similarity=0.692 Sum_probs=18.2
Q ss_pred EEEEEccCCCCCcccccccc
Q 040875 307 TVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 307 ~v~ivG~sGsGKSTll~~ll 326 (930)
.++||||+|||||||+++|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999874
No 414
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.57 E-value=0.0064 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
|..+.|+|++||||||+.+.|..-++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 415
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.56 E-value=0.04 Score=55.31 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=30.7
Q ss_pred cCCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 040875 841 KNPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885 (930)
Q Consensus 841 ~~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~t 885 (930)
.++.++++||+-. ++.+....+.+.+.+...+..+|+++++.+.
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 3678999999754 5666666677777665455667777777654
No 416
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.51 E-value=0.056 Score=70.06 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEE-EECCc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVV-KIDGE 749 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I-~idG~ 749 (930)
+++|+.+.|.||+|+|||||+..+..-.....|.+ ++++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 89999999999999999999998877655444433 44543
No 417
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.50 E-value=0.006 Score=59.88 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 040875 714 KSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl 736 (930)
=+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.45 E-value=0.0024 Score=64.60 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCC
Q 040875 715 STALVGQSGSGKSTIIGLIERFYDPL 740 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~~~ 740 (930)
.++|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988653
No 419
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.44 E-value=0.003 Score=62.03 Aligned_cols=24 Identities=50% Similarity=0.452 Sum_probs=21.2
Q ss_pred cCCCEEEEEccCCCCCcccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
++|++++|+|++||||||+++.|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999873
No 420
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.40 E-value=0.0035 Score=64.08 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.3
Q ss_pred CCEEEEEccCCCCCccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~l 325 (930)
+..++|+||+||||||+++.|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 568999999999999999976
No 421
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.36 E-value=0.011 Score=59.90 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=28.0
Q ss_pred hccCCCEEEeeccCCC-CC-HHHHHHHHHHHHHHcCCCeEEEEcc
Q 040875 839 ILKNPAVLLLDEATSA-LD-SQSEKLVQEALERLMVGRTSVVVAH 881 (930)
Q Consensus 839 Ll~~~~ILiLDEaTSa-LD-~~te~~i~~~i~~~~~~~TvI~IaH 881 (930)
+.++|+++|+||+-.. .+ ..++...++.....-++.-+++.+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 4468999999997642 33 3344455555444446778888887
No 422
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.36 E-value=0.0068 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC
Q 040875 715 STALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
.++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 423
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.31 E-value=0.0035 Score=66.75 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=20.0
Q ss_pred CCCEEEEEccCCCCCccccccc
Q 040875 304 AGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~l 325 (930)
++.+++|+||||||||||++.|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L 51 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQI 51 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998875
No 424
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.30 E-value=0.03 Score=63.39 Aligned_cols=34 Identities=6% Similarity=0.091 Sum_probs=26.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 703 FKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 703 L~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
|+.+.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4444324799999999999999999997766543
No 425
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.29 E-value=0.026 Score=60.20 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccc
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
..+.+.||+|+|||+|++++++-.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999866
No 426
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.28 E-value=0.0086 Score=61.72 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 709 NIEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 709 ~i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+-++|.+++|+|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578899999999999999999998743
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.28 E-value=0.0098 Score=63.28 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
|..+.|+|+|||||||+.+.|..-++ .|.+.||+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 45789999999999999999987553 36677876
No 428
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.27 E-value=0.0088 Score=58.87 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 429
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.21 E-value=0.028 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+.+.-+-|.|++|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345668999999999999999987654
No 430
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.20 E-value=0.065 Score=60.16 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=27.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
=++.+.+.|+|++||||||+.+.|..-+ |-..+|.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 3567899999999999999999998644 4455554
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.17 E-value=0.0046 Score=65.58 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.4
Q ss_pred eecCCCEEEEEccCCCCCcccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+++|++++|+||+|||||||+..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999999988763
No 432
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.14 E-value=0.0014 Score=71.66 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=35.5
Q ss_pred EEeeEEeCCCCCCcccccceeeeecCC-------CEEEEEccCCCCCcccccccc
Q 040875 279 FRNVVFAYPSRPETIIFKDFCLKVPAG-------NTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 279 ~~~~~f~y~~~~~~~~L~~isl~i~~G-------~~v~ivG~sGsGKSTll~~ll 326 (930)
.++++..|. ...+++++++.+++| +.++++||+|||||||++++.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 334444453 235789999999887 899999999999999999874
No 433
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.13 E-value=0.0019 Score=64.60 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=30.6
Q ss_pred EEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 283 VFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 283 ~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+|+||+ ..++++++|+..++++ ++++|++|+|||||++.+..
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 455654 3468999999998885 78999999999999998753
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.11 E-value=0.0024 Score=68.30 Aligned_cols=42 Identities=29% Similarity=0.238 Sum_probs=33.3
Q ss_pred EEEEeeEEeCCCCCCcccccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 277 VEFRNVVFAYPSRPETIIFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 277 i~~~~~~f~y~~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.++++++.|+.. + +++|++ +|+.++++|++||||||++..|
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHH
Confidence 4456677777432 1 678888 8999999999999999998876
No 435
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.07 E-value=0.011 Score=58.27 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
+|..+.|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999988553
No 436
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.05 E-value=0.12 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.|..-+-|.||+|+|||+|++++.+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678999999999999999999865
No 437
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.011 Score=57.23 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 040875 715 STALVGQSGSGKSTIIGLI 733 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL 733 (930)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.95 E-value=0.013 Score=59.37 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECC
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFYDPLKGVVKIDG 748 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~idG 748 (930)
+-.|+|+|++||||||+.+.|.++ |...+|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 458999999999999999999872 5556664
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.93 E-value=0.0068 Score=60.93 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=22.8
Q ss_pred ceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 297 DFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 297 ~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.++++.+| +++|+||+||||||++.+|
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHH
Confidence 344555554 9999999999999999987
No 440
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.93 E-value=0.0058 Score=59.75 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.8
Q ss_pred CCEEEEEccCCCCCcccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~ll 326 (930)
|.++.|+|++||||||+.+.|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999873
No 441
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.91 E-value=0.0035 Score=72.78 Aligned_cols=27 Identities=41% Similarity=0.420 Sum_probs=24.5
Q ss_pred eeecCCCEEEEEccCCCCCcccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+++|+.++|+|++|||||||+++|.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHH
Confidence 367899999999999999999999873
No 442
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.91 E-value=0.014 Score=58.40 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+|..++|+|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 443
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.006 Score=67.92 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=23.2
Q ss_pred eecCCCEEEEEccCCCCCccccccc
Q 040875 301 KVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 301 ~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
-|++|++++|+||+|||||||+..+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHH
Confidence 6899999999999999999999854
No 444
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.88 E-value=0.012 Score=58.45 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999754
No 445
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.84 E-value=0.012 Score=58.16 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+++..+.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998754
No 446
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.83 E-value=0.011 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
..++|+|++|||||||+..|.+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999987654
No 447
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.82 E-value=0.012 Score=61.38 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 040875 715 STALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.++|+|+||||||||.+.|.+-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998765
No 448
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.79 E-value=0.006 Score=65.42 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.5
Q ss_pred eeeeecCCCEEEEEccCCCCCccccccc
Q 040875 298 FCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 298 isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++++.++|+.++|+||+||||||++..|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHH
Confidence 4566788999999999999999998865
No 449
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.77 E-value=0.054 Score=59.61 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=30.5
Q ss_pred CCCEEEeeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEccCchh
Q 040875 842 NPAVLLLDEATSALDSQSEKLVQEALERLMVGRTSVVVAHRLST 885 (930)
Q Consensus 842 ~~~ILiLDEaTSaLD~~te~~i~~~i~~~~~~~TvI~IaHrl~t 885 (930)
+++++++||+-. ++.+....+.+.+++...+..+|++|++.+.
T Consensus 119 ~~~vliiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 578999999754 6777666777777654445667777887654
No 450
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.76 E-value=0.0048 Score=62.42 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=23.9
Q ss_pred eeecCCCEEEEEccCCCCCccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.+++|.+++|+|++||||||+.+.|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHH
Confidence 66789999999999999999999876
No 451
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.74 E-value=0.063 Score=58.91 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++..-+-|.||+|+|||+|++++....
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999865
No 452
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.012 Score=65.26 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+..+.|.||+|+||||+++.+.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 453
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.69 E-value=0.03 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+.-+|+++|++|+|||||++.|.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999763
No 454
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.67 E-value=0.015 Score=57.03 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.++..+.|+|++||||||+.+.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999998655
No 455
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.63 E-value=0.015 Score=57.63 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998755
No 456
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.60 E-value=0.017 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++|..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
No 457
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.59 E-value=0.046 Score=58.08 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHH-HHhccc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIG-LIERFY 737 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~-lL~rl~ 737 (930)
+++| .+-|.||+|+|||||+. ++....
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789 89999999999999954 444433
No 458
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.57 E-value=0.014 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 040875 715 STALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
++.|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 459
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.02 Score=57.54 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFYDP 739 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~~ 739 (930)
+|..|+|.|++||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987654
No 460
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.55 E-value=0.0075 Score=59.74 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred cccceeeeecCCCEEEEEccCCCCCccccccccc
Q 040875 294 IFKDFCLKVPAGNTVALVGGSGSGKSTVVSASLE 327 (930)
Q Consensus 294 ~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll~ 327 (930)
+++++|++.++. .++++|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999998877 678999999999999998753
No 461
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.53 E-value=0.0071 Score=69.31 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=29.4
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
..++++++++++| ++|+||+|||||||++++.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa 85 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVA 85 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHH
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHH
Confidence 4689999999999 9999999999999999874
No 462
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.49 E-value=0.13 Score=67.45 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcccCCCC-cEEEECCc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFYDPLK-GVVKIDGE 749 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~~~~~-G~I~idG~ 749 (930)
+++|+.+-|.||+|+|||||+..+..-..... .-+++|+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 89999999999999999999877765443322 23455553
No 463
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.45 E-value=0.016 Score=61.13 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|++||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 464
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.45 E-value=0.018 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+++|++|+|||||++.|.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 465
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.42 E-value=0.02 Score=57.64 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.++|..|+|+|++||||||+.+.|..-+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998755
No 466
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.41 E-value=0.0074 Score=59.45 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred cCCCEEEEEccCCCCCccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.+|.+++++|++||||||+.+.|
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 46889999999999999998875
No 467
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.40 E-value=0.019 Score=56.02 Aligned_cols=31 Identities=32% Similarity=0.284 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEEC
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYDPLKGVVKID 747 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~~~~G~I~id 747 (930)
..+.|+|++||||||+.+.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 12555554
No 468
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.40 E-value=0.018 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 040875 715 STALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 78999999999999999997643
No 469
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.39 E-value=0.11 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 712 AEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 712 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+...+.|.|++|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998754
No 470
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.0066 Score=62.72 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=27.4
Q ss_pred ccccce-eeeecCCCEEEEEccCCCCCccccccc
Q 040875 293 IIFKDF-CLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 293 ~~L~~i-sl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
+.|+++ .--+++|++++|+||+||||||++..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 346666 667999999999999999999996543
No 471
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.033 Score=53.39 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040875 715 STALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r 735 (930)
+|+++|++|+|||||++.|.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999999986
No 472
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.39 E-value=0.14 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.+..-+-|.||+|+|||+|++++.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 466789999999999999999999865
No 473
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.36 E-value=0.0085 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.7
Q ss_pred eeecCCCEEEEEccCCCCCccccccc
Q 040875 300 LKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 300 l~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
...++|.+++|+|++||||||+.+.|
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHH
Confidence 34467999999999999999999876
No 474
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.36 E-value=0.0063 Score=70.69 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=28.9
Q ss_pred cccceeeeecCCCEEEEEccCCCCCccccccc
Q 040875 294 IFKDFCLKVPAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 294 ~L~~isl~i~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.++++++++.+| +++|+|++|||||||+.+|
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHH
Confidence 467899999999 9999999999999999998
No 475
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.33 E-value=0.0059 Score=66.83 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.2
Q ss_pred ccccceeeeecCCCEEEEEccCCCCCcccccccc
Q 040875 293 IIFKDFCLKVPAGNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 293 ~~L~~isl~i~~G~~v~ivG~sGsGKSTll~~ll 326 (930)
.+++++++.+++|..++++|+.|+||||+++.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999874
No 476
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.32 E-value=0.0091 Score=57.81 Aligned_cols=19 Identities=32% Similarity=0.204 Sum_probs=17.6
Q ss_pred EEEEEccCCCCCccccccc
Q 040875 307 TVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 307 ~v~ivG~sGsGKSTll~~l 325 (930)
+++|+|++||||||+.+.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999976
No 477
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.32 E-value=0.009 Score=59.82 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.5
Q ss_pred CCEEEEEccCCCCCcccccccc
Q 040875 305 GNTVALVGGSGSGKSTVVSASL 326 (930)
Q Consensus 305 G~~v~ivG~sGsGKSTll~~ll 326 (930)
..+++|+|++||||||+.+.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999998763
No 478
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.30 E-value=0.016 Score=57.58 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 710 IEAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 710 i~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.+++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998765
No 479
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.28 E-value=0.019 Score=59.91 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 040875 715 STALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+|+++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999863
No 480
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.28 E-value=0.0093 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred cCCCEEEEEccCCCCCccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~l 325 (930)
++|.++.|+|++||||||+.+.|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999998865
No 481
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.27 E-value=0.021 Score=54.40 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040875 715 STALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r 735 (930)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 799999999999999999875
No 482
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.034 Score=55.54 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7999999999999999988753
No 483
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.23 E-value=0.023 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+|+|++|+|||||++.|.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 7999999999999999999864
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.23 E-value=0.17 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcccC
Q 040875 714 KSTALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 714 e~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
..+.|.||+|+||||+++.+.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.22 E-value=0.005 Score=66.72 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=29.7
Q ss_pred ccccceeeeecCCCE--EEEEccCCCCCccccccc
Q 040875 293 IIFKDFCLKVPAGNT--VALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 293 ~~L~~isl~i~~G~~--v~ivG~sGsGKSTll~~l 325 (930)
.+++++++.+++|+. ++|+|+.||||||+.++|
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~l 44 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEEL 44 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHH
Confidence 468889999999999 999999999999998864
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.22 E-value=0.023 Score=54.44 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccc
Q 040875 715 STALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+|+++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.17 E-value=0.022 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999764
No 488
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.17 E-value=0.034 Score=54.91 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=28.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 040875 702 IFKGFSINIEAEKSTALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 702 vL~~vsl~i~~Ge~vaIVG~sGsGKSTL~~lL~rl 736 (930)
.+++.-+.+ .|..+.|+|+||+|||||+..|..-
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 567776665 6788999999999999999988764
No 489
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.16 E-value=0.023 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.16 E-value=0.023 Score=54.24 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040875 715 STALVGQSGSGKSTIIGLIER 735 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~r 735 (930)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 491
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.15 E-value=0.024 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
+..|+|+|++||||||+.+.|..-+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997654
No 492
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.15 E-value=0.0087 Score=58.67 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCEEEEEccCCCCCccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~l 325 (930)
.++..+.|+|++||||||+.+.|
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 46789999999999999999876
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.14 E-value=0.023 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+++|++|+|||||++.|.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 494
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.12 E-value=0.011 Score=58.36 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.3
Q ss_pred CCCEEEEEccCCCCCccccccc
Q 040875 304 AGNTVALVGGSGSGKSTVVSAS 325 (930)
Q Consensus 304 ~G~~v~ivG~sGsGKSTll~~l 325 (930)
+|.+++|+|++||||||+.+.|
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999998876
No 495
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.10 E-value=0.022 Score=59.94 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccC
Q 040875 715 STALVGQSGSGKSTIIGLIERFYD 738 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl~~ 738 (930)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998753
No 496
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.09 E-value=0.019 Score=56.17 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=18.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 711 EAEKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 711 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.++..+.|+|.+||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999998654
No 497
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.09 E-value=0.01 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.6
Q ss_pred cCCCEEEEEccCCCCCcccccccccc
Q 040875 303 PAGNTVALVGGSGSGKSTVVSASLED 328 (930)
Q Consensus 303 ~~G~~v~ivG~sGsGKSTll~~ll~~ 328 (930)
++|..++|+|++|+|||||++.+..+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999998643
No 498
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.09 E-value=0.023 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.024 Score=55.89 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccc
Q 040875 713 EKSTALVGQSGSGKSTIIGLIERFY 737 (930)
Q Consensus 713 Ge~vaIVG~sGsGKSTL~~lL~rl~ 737 (930)
.=+++++|++|+|||||++.|.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998754
No 500
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.05 E-value=0.025 Score=54.28 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 040875 715 STALVGQSGSGKSTIIGLIERF 736 (930)
Q Consensus 715 ~vaIVG~sGsGKSTL~~lL~rl 736 (930)
+|+++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999999854
Done!