BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040876
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 132/331 (39%), Gaps = 68/331 (20%)
Query: 31 CLESEREALLRFKQDLQDPSNRLASWNIGGDCC--TWAGIVCDNVTG-------HIIELN 81
C +++ALL+ K+DL +P+ L+SW DCC TW G++CD T + LN
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 LRNPFTYYRRSRYKANPRSMLVGK-----GPIPSWLYRLTHLEQLSVADRPSLASREDQD 136
L P+ + +G GPIP + +LT L L + + S D
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH--TNVSGAIPD 119
Query: 137 LLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKN 196
LS I K L L +++SG L I N
Sbjct: 120 FLSQI-----------------------------KTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRI-LHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN 255
L + N I G +P S SKL + +S N+L G + F+ N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP----------TFA----N 196
Query: 256 LTLKFLDLGENQIHGEMTNLTNA---TQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSF 312
L L F+DL N + G+ + L + TQ +L +S F +S NL LDL NN
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
Query: 313 LGSISHFWCYRSNETKRLRALSLGDNYLQGE 343
G++ + K L +L++ N L GE
Sbjct: 257 YGTLPQGL----TQLKFLHSLNVSFNNLCGE 283
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 190 QIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237
++G KNL+ LDL NN I G +P L +L L L++S N L G + +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 162 FDIFSGCVSKG------LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSL 215
+++ SG + K L IL L + ISG + +++G + L+ LDL +N + G +P ++
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 216 NELSKLRILHLSDNKLNGTLSEI 238
+ L+ L + LS+N L+G + E+
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPEM 720
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 169 VSKGLEILVLRSSSISGHLTEQI-GHFKN-LDTLDLGNNSIVGLVPLSLNELSKLRILHL 226
+S L L L S++ SG + + + KN L L L NN G +P +L+ S+L LHL
Sbjct: 363 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 227 SDNKLNGTLSEIHFVNLTKLSVFSVNENNL------------TLKFLDLGENQIHGEM-T 273
S N L+GT+ +L+KL + N L TL+ L L N + GE+ +
Sbjct: 423 SFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 274 NLTNATQLWYLRLHSNNFSGPLSLISS---NLVYLDLFNNSFLGSI 316
L+N T L ++ L +N +G + NL L L NNSF G+I
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 197 LDTLDLGNNSIVG--LVPLSLNE-LSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNE 253
L+ LDL NSI G +V L++ +L+ L +S NK++G + VNL
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---------- 199
Query: 254 NNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFN---N 310
+FLD+ N + L + + L +L + N SG S S L L N N
Sbjct: 200 -----EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 311 SFLGSISHFWCYRSNETKRLRALSLGDNYLQGE 343
F+G I K L+ LSL +N GE
Sbjct: 255 QFVGPIPPL------PLKSLQYLSLAENKFTGE 281
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 173 LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232
L + L ++ ++G + + IG +NL L L NNS G +P L + L L L+ N N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 233 GTLSEIHFVNLTKLSV 248
GT+ F K++
Sbjct: 549 GTIPAAMFKQSGKIAA 564
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 52/235 (22%)
Query: 152 AKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLV 211
A S +IS D+ S CV+ LE L + S++ S + +G L LD+ N + G
Sbjct: 181 AISGNKISGDVDV-SRCVN--LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDF 236
Query: 212 PLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-------------L 258
+++ ++L++L++S N+ G + + L L S+ EN T L
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 259 KFLDLGENQIHG--------------------------EMTNLTNATQLWYLRLHSNNFS 292
LDL N +G M L L L L N FS
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 293 G--PLSL--ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQGE 343
G P SL +S++L+ LDL +N+F G I C N L+ L L +N G+
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQELYLQNNGFTGK 406
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 185 GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244
GH + + ++ LD+ N + G +P + + L IL+L N ++G++ + +L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLR 677
Query: 245 KLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNA-TQLWYLRLHSNNFSGPL 295
L++ LDL N++ G + +A T L + L +NN SGP+
Sbjct: 678 GLNI------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 167 GCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHL 226
G +SK L L L + + G + +++ + K L+TL L N + G +P L+ + L + L
Sbjct: 436 GSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 227 SDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEM-TNLTNATQLWYLR 285
S+N+L G + + + +L EN L L L N G + L + L +L
Sbjct: 495 SNNRLTGEIPKW----IGRL------EN---LAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 286 LHSNNFSG 293
L++N F+G
Sbjct: 542 LNTNLFNG 549
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 162 FDIFSGCVSKG------LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSL 215
+++ SG + K L IL L + ISG + +++G + L+ LDL +N + G +P ++
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 216 NELSKLRILHLSDNKLNGTLSEI 238
+ L+ L + LS+N L+G + E+
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEM 723
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 169 VSKGLEILVLRSSSISGHLTEQI-GHFKN-LDTLDLGNNSIVGLVPLSLNELSKLRILHL 226
+S L L L S++ SG + + + KN L L L NN G +P +L+ S+L LHL
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 227 SDNKLNGTLSEIHFVNLTKLSVFSVNENNL------------TLKFLDLGENQIHGEM-T 273
S N L+GT+ +L+KL + N L TL+ L L N + GE+ +
Sbjct: 426 SFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 274 NLTNATQLWYLRLHSNNFSGPLSLISS---NLVYLDLFNNSFLGSI 316
L+N T L ++ L +N +G + NL L L NNSF G+I
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 27/153 (17%)
Query: 197 LDTLDLGNNSIVG--LVPLSLNE-LSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNE 253
L+ LDL NSI G +V L++ +L+ L +S NK++G + VNL
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---------- 202
Query: 254 NNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFN---N 310
+FLD+ N + L + + L +L + N SG S S L L N N
Sbjct: 203 -----EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 311 SFLGSISHFWCYRSNETKRLRALSLGDNYLQGE 343
F+G I K L+ LSL +N GE
Sbjct: 258 QFVGPIPPL------PLKSLQYLSLAENKFTGE 284
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 178 LRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237
L ++ ++G + + IG +NL L L NNS G +P L + L L L+ N NGT+
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 238 IHFVNLTKLSV 248
F K++
Sbjct: 557 AMFKQSGKIAA 567
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 52/235 (22%)
Query: 152 AKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLV 211
A S +IS D+ S CV+ LE L + S++ S + +G L LD+ N + G
Sbjct: 184 AISGNKISGDVDV-SRCVN--LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDF 239
Query: 212 PLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-------------L 258
+++ ++L++L++S N+ G + + L L S+ EN T L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 259 KFLDLGENQIHG--------------------------EMTNLTNATQLWYLRLHSNNFS 292
LDL N +G M L L L L N FS
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 293 G--PLSL--ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQGE 343
G P SL +S++L+ LDL +N+F G I C N L+ L L +N G+
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQELYLQNNGFTGK 409
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 185 GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244
GH + + ++ LD+ N + G +P + + L IL+L N ++G++ + +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLR 680
Query: 245 KLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNA-TQLWYLRLHSNNFSGPL 295
L++ LDL N++ G + +A T L + L +NN SGP+
Sbjct: 681 GLNI------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 183 ISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242
+ G + +++ + K L+TL L N + G +P L+ + L + LS+N+L G + +
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW---- 509
Query: 243 LTKLSVFSVNENNLTLKFLDLGENQIHGEM-TNLTNATQLWYLRLHSNNFSG 293
+ +L EN L L L N G + L + L +L L++N F+G
Sbjct: 510 IGRL------EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 42/199 (21%)
Query: 110 SWLYRLTHLEQLS----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSSQ 156
S L LT L+QLS V D +P +L + E D+ SN + +L+ + ++
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209
Query: 157 EISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPL 213
+ISDI + G ++ E+ S++G+ + IG NL LDL NN I L PL
Sbjct: 210 QISDITPL--GILTNLDEL------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 261
Query: 214 SLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT 273
S L+KL L L N+++ N++ L+ + L L+L ENQ+ +++
Sbjct: 262 S--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DIS 303
Query: 274 NLTNATQLWYLRLHSNNFS 292
++N L YL L+ NN S
Sbjct: 304 PISNLKNLTYLTLYFNNIS 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 42/199 (21%)
Query: 110 SWLYRLTHLEQLS----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSSQ 156
S L LT L+QLS V D +P +L + E D+ SN + +L+ + ++
Sbjct: 149 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 208
Query: 157 EISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPL 213
+ISDI + G ++ L S++G+ + IG NL LDL NN I L PL
Sbjct: 209 QISDITPL--GILTN------LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 260
Query: 214 SLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT 273
S L+KL L L N+++ N++ L+ + L L+L ENQ+ +++
Sbjct: 261 S--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DIS 302
Query: 274 NLTNATQLWYLRLHSNNFS 292
++N L YL L+ NN S
Sbjct: 303 PISNLKNLTYLTLYFNNIS 321
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 43/200 (21%)
Query: 110 SWLYRLTHLEQLS-----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSS 155
S L LT L+QLS V D +P +L + E D+ SN + +L+ + ++
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 156 QEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVP 212
+ISDI + G ++ E+ S++G+ + IG NL LDL NN I L P
Sbjct: 205 NQISDITPL--GILTNLDEL------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 213 LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEM 272
LS L+KL L L N+++ N++ L+ + L L+L ENQ+ ++
Sbjct: 257 LS--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DI 298
Query: 273 TNLTNATQLWYLRLHSNNFS 292
+ ++N L YL L+ NN S
Sbjct: 299 SPISNLKNLTYLTLYFNNIS 318
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 43/200 (21%)
Query: 110 SWLYRLTHLEQLS-----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSS 155
S L LT L+QLS V D +P +L + E D+ SN + +L+ + ++
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 156 QEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVP 212
+ISDI + G ++ E+ S++G+ + IG NL LDL NN I L P
Sbjct: 205 NQISDITPL--GILTNLDEL------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 256
Query: 213 LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEM 272
LS L+KL L L N+++ N++ L+ + L L+L ENQ+ ++
Sbjct: 257 LS--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DI 298
Query: 273 TNLTNATQLWYLRLHSNNFS 292
+ ++N L YL L+ NN S
Sbjct: 299 SPISNLKNLTYLTLYFNNIS 318
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 42/199 (21%)
Query: 110 SWLYRLTHLEQLS----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSSQ 156
S L LT L+QL+ V D +P +L + E D+ SN + +L+ + ++
Sbjct: 145 SALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 157 EISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPL 213
+ISDI + G ++ E+ S++G+ + IG NL LDL NN I L PL
Sbjct: 205 QISDITPL--GILTNLDEL------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 256
Query: 214 SLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT 273
S L+KL L L N+++ N++ L+ + L L+L ENQ+ +++
Sbjct: 257 S--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DIS 298
Query: 274 NLTNATQLWYLRLHSNNFS 292
++N L YL L+ NN S
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 42/199 (21%)
Query: 110 SWLYRLTHLEQLS----VAD-RP--SLASREDQDLLSN------IRQRLSKCRTGAKSSQ 156
S L LT L+QL+ V D +P +L + E D+ SN + +L+ + ++
Sbjct: 145 SALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 157 EISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPL 213
+ISDI + G ++ E+ S++G+ + IG NL LDL NN I L PL
Sbjct: 205 QISDITPL--GILTNLDEL------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL 256
Query: 214 SLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT 273
S L+KL L L N+++ N++ L+ + L L+L ENQ+ +++
Sbjct: 257 S--GLTKLTELKLGANQIS---------NISPLAGLTA------LTNLELNENQLE-DIS 298
Query: 274 NLTNATQLWYLRLHSNNFS 292
++N L YL L+ NN S
Sbjct: 299 PISNLKNLTYLTLYFNNIS 317
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 31/181 (17%)
Query: 115 LTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLE 174
L L L+ +R ++S + D+ ++ +L+ + ++ +ISDI + G ++ E
Sbjct: 166 LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDE 221
Query: 175 ILVLRSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKL 231
+ S++G+ + IG NL LDL NN I L PLS L+KL L L N++
Sbjct: 222 L------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQI 273
Query: 232 NGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNF 291
+ N++ L+ + L L+L ENQ+ +++ ++N L YL L+ NN
Sbjct: 274 S---------NISPLAGLTA------LTNLELNENQLE-DISPISNLKNLTYLTLYFNNI 317
Query: 292 S 292
S
Sbjct: 318 S 318
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRIL 224
F G + G++ L S I L HF +L+ L L N I + + L+ L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 225 HLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL------------TLKFLDLGENQIH--- 269
+LS N L G++ F NL KL V ++ N++ LK L L NQ+
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 270 -GEMTNLTNATQLWYLRLHSN 289
G LT+ ++W LH+N
Sbjct: 388 DGIFDRLTSLQKIW---LHTN 405
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 45/232 (19%)
Query: 134 DQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGH 193
D DL IR L K +QE + + V G ++ +SI G I +
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV-----ASIQG-----IEY 64
Query: 194 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNE 253
NL+ L+L N I + PLS L KL L++ NK+ +S + NLT L +NE
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD-ISALQ--NLTNLRELYLNE 119
Query: 254 N---------NLTLKF-LDLGENQIHGEMTNLTNATQLWYLRLHSNNFSG--PLS----L 297
+ NLT + L+LG N +++ L+N T L YL + + P++ L
Sbjct: 120 DNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDL 179
Query: 298 ISSNLVYLDLFNNSFLGSIS--HFWCYRSNE---------TKRLRALSLGDN 338
S +L Y + + S L S++ H++ N+ RL +L +G+N
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNN 231
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 20/100 (20%)
Query: 191 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV-NLTKLSVF 249
+ + L++L +GNN I L PL+ LS+L L + N+ +S+I+ V +LTK
Sbjct: 217 VANXTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQ----ISDINAVKDLTK---- 266
Query: 250 SVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSN 289
LK L++G NQI +++ L N +QL L L++N
Sbjct: 267 --------LKXLNVGSNQI-SDISVLNNLSQLNSLFLNNN 297
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 191 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
I +++ TLDL + I + PL+ LS L++L+L N++ N++ L+ +
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQI---------TNISPLAGLT 157
Query: 251 VNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFS--GPLSLISSNLVYLDLF 308
L++L +G NQ++ ++T L N ++L LR N S PL+ + NL+ + L
Sbjct: 158 ------NLQYLSIGNNQVN-DLTPLANLSKLTTLRADDNKISDISPLASL-PNLIEVHLK 209
Query: 309 NN-----SFLGSISHFWCY 322
+N S L ++S+ +
Sbjct: 210 DNQISDVSPLANLSNLFIV 228
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 176 LVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTL 235
L L +S++G + + H K L L++ +N+I + P L LS+ I++LS N L+ T
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC 562
Query: 236 SEIHFV 241
S IHF+
Sbjct: 563 SNIHFI 568
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 200 LDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL--- 256
LDL +N + L + + L+KLR+L+L+DNKL TL F L L V +N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 257 ---------TLKFLDLGENQIHGEMTNLTNA-TQLWYLRLHSNNF-SGPLSLIS--SNLV 303
L L L NQ+ + ++ T+L YL L N S P + ++L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 304 YLDLFNNSF 312
L L+NN
Sbjct: 161 ELRLYNNQL 169
>pdb|3D26|A Chain A, Norwalk P Domain A-Trisaccharide Complex
pdb|3D26|B Chain B, Norwalk P Domain A-Trisaccharide Complex
Length = 301
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 47 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 95
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 96 GCDWHINMTQFGHSSQTQY 114
>pdb|2ZL6|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo- Blood Group Antigens By Norwalk
Virus
pdb|2ZL6|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo- Blood Group Antigens By Norwalk
Virus
pdb|2ZL7|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigens By Norwalk
Virus
pdb|2ZL7|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigens By Norwalk
Virus
Length = 295
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 52 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 100
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 101 GCDWHINMTQFGHSSQTQY 119
>pdb|3BY1|A Chain A, Unliganded Norvalk Virus P Domain
Length = 313
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 59 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 107
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 108 GCDWHINMTQFGHSSQTQY 126
>pdb|2ZL5|A Chain A, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigen By Norwalk
Virus
pdb|2ZL5|B Chain B, Atomic Resolution Structural Characterization Of
Recognition Of Histo-Blood Group Antigen By Norwalk
Virus
Length = 295
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 52 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 100
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 101 GCDWHINMTQFGHSSQTQY 119
>pdb|3BY2|A Chain A, Norwalk P Polypeptide (228-523)
Length = 305
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 59 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 107
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 108 GCDWHINMTQFGHSSQTQY 126
>pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 207 IVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL--SVFSVNENNLTLKFLDLG 264
+VG P+SL+ ++K+R NGT+ +NLT+L + F E + F DLG
Sbjct: 276 LVGTTPVSLSHVAKIR------GTSNGTV-----INLTELDGTPFHPFEGPAPIGFPDLG 324
Query: 265 ENQIHGEMTNLTNATQLWY 283
H MT +++Q Y
Sbjct: 325 GCDWHINMTQFGHSSQTQY 343
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 164 IFSGCVSKGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 222
IF+G S LE+L + +S + I +NL LDL + L P + N LS L+
Sbjct: 440 IFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 223 ILHLSDNKLNGTLSEIHFVNLTKL 246
+L+++ N+L I F LT L
Sbjct: 498 VLNMASNQLKSVPDGI-FDRLTSL 520
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 173 LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232
LE+L L +SI +L+TL+L +N + + + LSKLR L L +N +
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 233 G----------TLSEIHFVNLTKLSVFS--VNENNLTLKFLDLGENQIHGEMTNLTNATQ 280
+L + L KL S E LK+L+LG I +M NLT
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVG 219
Query: 281 LWYLRLHSNNF 291
L L + N+F
Sbjct: 220 LEELEMSGNHF 230
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 188 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGT-----LSEIHFVN 242
T+ + H KNL+ L + NN + +V L LSKL +L L N++ T L ++++++
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNTGGLTRLKKVNWID 178
Query: 243 LT 244
LT
Sbjct: 179 LT 180
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDN-------KLNGTLSE--IHFVNL 243
+ KNL TL L NN I + P + L KL L+LS N K+ TL E +H +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 244 TKLSVFSVNENNLTLKFLDLGENQIHG---EMTNLTNATQLWYLRLHSNNFS 292
TK+ N N + ++LG N + E +L Y+R+ N +
Sbjct: 134 TKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 155 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252
H LD L LG N + L + L+KL+ L L+ N+L ++ F LT L S++
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 253 ENNL 256
N L
Sbjct: 164 TNQL 167
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256
L TL L NN + L + L++L L+L N+L S + F LTKL +N N L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQL 143
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252
H LD L LG N + L + L+KL+ L L+ N+L ++ F LT L S++
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 253 ENNL 256
N L
Sbjct: 164 TNQL 167
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256
L TL L NN + L + L++L L+L N+L S + F LTKL +N N L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQL 143
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDN-------KLNGTLSE--IHFVNL 243
+ KNL TL L NN I + P + L KL L+LS N K+ TL E +H +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Query: 244 TKLSVFSVNENNLTLKFLDLGENQIHG---EMTNLTNATQLWYLRLHSNNFS 292
TK+ N N + ++LG N + E +L Y+R+ N +
Sbjct: 134 TKVRKSVFNGLNQMI-VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 164 IFSGCVSKGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 222
IF+G S LE+L + +S + I +NL LDL + L P + N LS L+
Sbjct: 464 IFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 223 ILHLSDN 229
+L++S N
Sbjct: 522 VLNMSHN 528
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 151 GAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTE-------------QIGHFKNL 197
G++ E + D C +KGL++L I +TE ++ ++K+L
Sbjct: 1 GSRCPTECT-CLDTVVRCSNKGLKVL---PKGIPRDVTELYLDGNQFTLVPKELSNYKHL 56
Query: 198 DTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT 257
+DL NN I L S + +++L L LS N+L + F L L + S++ N+++
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 258 L 258
+
Sbjct: 116 V 116
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 202 LGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256
L NN I L P + L L+ L+ + NKL + + F LT+L+ +N+N+L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-FDKLTQLTQLDLNDNHL 93
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 164 IFSGCVSKGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 222
IF+G S LE+L + +S + I +NL LDL + L P + N LS L+
Sbjct: 145 IFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 223 ILHLSDN 229
+L++S N
Sbjct: 203 VLNMSHN 209
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 23/104 (22%)
Query: 224 LHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT--------------LKFLDLGENQIH 269
L L NKL +L F LT+L+ S++ N L+ LK+LDL N +
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 270 GEMTNLTNATQLWYLRL-HSN-----NFSGPLSLISSNLVYLDL 307
+N QL +L HSN FS LSL NL+YLD+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYLDI 133
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 164 IFSGCVSKGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 222
IF+G S LE+L + +S + I +NL LDL + L P + N LS L+
Sbjct: 440 IFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 223 ILHLSDN 229
+L++S N
Sbjct: 498 VLNMSHN 504
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252
+L L LG N + L N+L+ L L+LS N+L +L F LT+L ++N
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108
Query: 253 ENNL------------TLKFLDLGENQIHGEMTNLTNA-TQLWYLRLHSNNFSGPLSLIS 299
N L LK L L +NQ+ + + T L Y+ LH N P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN----PWDCTC 164
Query: 300 SNLVYLDLFNNSFLGSI 316
+ YL + N G +
Sbjct: 165 PGIRYLSEWINKHSGVV 181
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 138 LSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGL----EILVLRSSSISGHLTEQIGH 193
++ IR R S C + S D V G+ ++L L + I+
Sbjct: 1 MARIRARGSACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR 60
Query: 194 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLS 247
L LDL NN + L ++L++L L L+DN+L ++ F NL L+
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLT 113
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 158 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 156 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 207
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 178 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 229
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 158 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 153 LDTLSLEDNQISDIVPLAC--LTKLQNLYLSKNHISDLRALCGLKNLDVLELFS 204
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 176 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 176 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 176 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 227
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 153 LDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 204
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 200 LDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLK 259
+DL N I + + L KL+ L L DN L+ IHF+ + +F +TL
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDN----ALTTIHFIP-SIPDIFLSGNKLVTLP 397
Query: 260 FLDLGENQIHGEMTNLTNATQLWYL 284
++L N IH L N L++L
Sbjct: 398 KINLTANLIHLSENRLENLDILYFL 422
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 173 LEILVL---RSSSISGHLTEQIGHFKNLDTLDLGNNSI-----VGLVPLSLNELSKLRIL 224
L+IL+L R SS SG T +L+ L LG N + L LS L++L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSEN--PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 225 HLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT----------LKFLDLGENQI 268
+L+ N LN +L F +LT L S+N N LT L+ LD+ NQ+
Sbjct: 486 YLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250
LDTL L +N I +VPL+ L+KL+ L+LS N ++ + NL L +FS
Sbjct: 156 LDTLSLEDNQIRRIVPLA--RLTKLQNLYLSKNHISDLRALRGLKNLDVLELFS 207
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRIL 224
F G + G++ L S I L HF +L+ L L N I + + L+ L+ L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKEL 328
Query: 225 HLSDNKLNGTLSEIHFVNLTKL 246
L N+L I F LT L
Sbjct: 329 ALDTNQLKSVPDGI-FDRLTSL 349
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 189 EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSV 248
E + + L L LG+N I + SL+ L LR LHL +NKL+ + + +L L V
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL--PDLKLLQV 268
Query: 249 FSVNENNLT 257
++ NN+T
Sbjct: 269 VYLHTNNIT 277
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 178 LRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237
L +S++ + + H K + L+L NSI + P L LS+ ++LS N L+ T S
Sbjct: 504 LSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSN 562
Query: 238 IHFVNLTK 245
IHF+ K
Sbjct: 563 IHFLTWYK 570
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 194 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV---NLTKLSVFS 250
+ L +LD+G N+I L P +L L++L+L N+L LS+ F NLT+L + S
Sbjct: 58 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMS 116
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 140 NIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDT 199
N+++ +K S +I D FS K LE L + + I G + NL
Sbjct: 312 NLKRSFTKQSISLASLPKIDD----FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 367
Query: 200 LDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-- 257
L L N+ SL L+ + L+ S +H +NLTK + + + +
Sbjct: 368 LSLSNSFT------SLRTLTNETFVSLAH-------SPLHILNLTKNKISKIESDAFSWL 414
Query: 258 --LKFLDLGENQIHGEMT-----NLTNATQLW-----YLRLHSNNFS 292
L+ LDLG N+I E+T L N +++ YL+L N+F+
Sbjct: 415 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 461
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 194 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV---NLTKLSVFS 250
+ L +LD+G N+I L P +L L++L+L N+L LS+ F NLT+L + S
Sbjct: 53 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMS 111
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 140 NIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDT 199
N+++ +K S +I D FS K LE L + + I G + NL
Sbjct: 307 NLKRSFTKQSISLASLPKIDD----FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 362
Query: 200 LDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-- 257
L L N+ SL L+ + L+ S +H +NLTK + + + +
Sbjct: 363 LSLSNSFT------SLRTLTNETFVSLAH-------SPLHILNLTKNKISKIESDAFSWL 409
Query: 258 --LKFLDLGENQIHGEMT-----NLTNATQLW-----YLRLHSNNFS 292
L+ LDLG N+I E+T L N +++ YL+L N+F+
Sbjct: 410 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 456
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 194 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV---NLTKLSVFS 250
+ L +LD+G N+I L P +L L++L+L N+L LS+ F NLT+L + S
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMS 106
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 140 NIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDT 199
N+++ +K S +I D FS K LE L + + I G + NL
Sbjct: 302 NLKRSFTKQSISLASLPKIDD----FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
Query: 200 LDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-- 257
L L N+ SL L+ + L+ S +H +NLTK + + + +
Sbjct: 358 LSLSNSFT------SLRTLTNETFVSLAH-------SPLHILNLTKNKISKIESDAFSWL 404
Query: 258 --LKFLDLGENQIHGEMT-----NLTNATQLW-----YLRLHSNNFS 292
L+ LDLG N+I E+T L N +++ YL+L N+F+
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,109,845
Number of Sequences: 62578
Number of extensions: 346523
Number of successful extensions: 1147
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 181
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)