Query 040876
Match_columns 343
No_of_seqs 468 out of 2755
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 12:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.4E-41 317.4 24.1 296 33-342 28-370 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.9E-26 4.2E-31 240.6 17.0 223 100-342 149-418 (968)
3 KOG0444 Cytoskeletal regulator 99.8 2.6E-23 5.6E-28 194.2 -3.0 208 107-341 46-304 (1255)
4 KOG4194 Membrane glycoprotein 99.8 8.3E-22 1.8E-26 182.8 6.2 217 100-342 111-379 (873)
5 KOG4194 Membrane glycoprotein 99.8 9.7E-23 2.1E-27 189.0 -0.6 236 101-341 135-405 (873)
6 PRK15370 E3 ubiquitin-protein 99.8 6.3E-19 1.4E-23 175.7 15.8 294 21-341 53-428 (754)
7 KOG0444 Cytoskeletal regulator 99.8 2.3E-21 5E-26 181.3 -2.6 213 100-340 87-351 (1255)
8 PRK15387 E3 ubiquitin-protein 99.8 2.6E-18 5.7E-23 170.6 13.6 212 100-343 231-460 (788)
9 KOG0472 Leucine-rich repeat pr 99.8 2.6E-20 5.5E-25 166.2 -3.3 146 100-256 146-309 (565)
10 KOG0472 Leucine-rich repeat pr 99.7 6.4E-21 1.4E-25 170.0 -10.3 209 101-340 78-309 (565)
11 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-17 2.8E-22 152.7 4.3 222 108-342 15-292 (319)
12 PLN03150 hypothetical protein; 99.7 9.5E-16 2.1E-20 151.9 13.5 153 29-232 367-528 (623)
13 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.9E-20 150.6 13.1 207 100-341 210-435 (788)
14 PLN03210 Resistant to P. syrin 99.6 6.5E-15 1.4E-19 155.6 15.7 206 100-337 620-878 (1153)
15 cd00116 LRR_RI Leucine-rich re 99.6 2.9E-16 6.3E-21 143.7 4.0 214 108-340 43-319 (319)
16 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.8E-22 133.2 -4.5 151 171-341 33-186 (264)
17 PRK15370 E3 ubiquitin-protein 99.6 4.2E-15 9E-20 148.5 11.3 165 116-313 178-359 (754)
18 KOG0618 Serine/threonine phosp 99.6 6E-17 1.3E-21 157.8 -2.2 188 100-311 250-487 (1081)
19 KOG0618 Serine/threonine phosp 99.5 3.2E-16 7E-21 152.8 -2.0 176 159-341 254-465 (1081)
20 KOG4237 Extracellular matrix p 99.5 9.6E-16 2.1E-20 136.9 -0.8 215 100-340 76-358 (498)
21 PLN03210 Resistant to P. syrin 99.5 2.5E-13 5.5E-18 143.7 16.1 142 171-317 657-819 (1153)
22 KOG0617 Ras suppressor protein 99.5 3E-16 6.4E-21 125.5 -4.9 137 160-314 47-187 (264)
23 KOG1909 Ran GTPase-activating 99.3 8.3E-13 1.8E-17 116.7 2.0 217 109-340 23-310 (382)
24 KOG4237 Extracellular matrix p 99.3 2.6E-13 5.7E-18 121.5 -1.8 58 280-341 275-335 (498)
25 KOG0532 Leucine-rich repeat (L 99.3 3.8E-13 8.3E-18 125.5 -2.0 130 160-297 112-252 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 2E-13 4.3E-18 127.4 -4.9 148 159-314 88-248 (722)
27 PLN03150 hypothetical protein; 99.2 5.8E-11 1.3E-15 117.9 9.1 107 173-292 420-528 (623)
28 COG4886 Leucine-rich repeat (L 99.2 3.8E-11 8.1E-16 113.4 6.4 89 160-254 130-219 (394)
29 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.7E-16 107.3 -0.2 20 108-127 206-225 (490)
30 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 109.5 6.9 170 110-315 110-292 (394)
31 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8.1E-15 93.3 4.4 121 171-307 19-147 (175)
32 PF14580 LRR_9: Leucine-rich r 99.0 8.9E-10 1.9E-14 91.1 6.6 127 191-336 15-148 (175)
33 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3E-15 105.5 1.8 169 171-342 146-340 (505)
34 PF08263 LRRNT_2: Leucine rich 98.9 2.2E-09 4.8E-14 67.3 4.3 39 33-71 2-43 (43)
35 KOG1909 Ran GTPase-activating 98.9 3.7E-10 7.9E-15 100.1 -0.1 200 128-342 28-284 (382)
36 KOG3207 Beta-tubulin folding c 98.9 5.1E-10 1.1E-14 101.9 0.8 179 160-341 112-314 (505)
37 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 72.2 3.7 60 172-231 2-61 (61)
38 KOG1259 Nischarin, modulator o 98.8 6.1E-10 1.3E-14 97.0 -1.6 81 171-256 284-364 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 6.2E-09 1.3E-13 70.8 3.0 61 195-256 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.6 3.5E-09 7.6E-14 100.6 -1.5 141 165-314 114-269 (414)
41 KOG1859 Leucine-rich repeat pr 98.6 4.2E-10 9.2E-15 108.2 -7.7 167 109-292 102-292 (1096)
42 COG5238 RNA1 Ran GTPase-activa 98.6 3E-08 6.5E-13 85.4 3.7 224 110-341 24-316 (388)
43 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.7E-13 96.8 -2.2 165 163-342 89-269 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.4 1.4E-07 3E-12 81.5 3.6 199 129-342 29-286 (388)
45 KOG1859 Leucine-rich repeat pr 98.3 1.4E-08 3E-13 98.0 -6.4 155 162-340 102-291 (1096)
46 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.6E-12 82.8 -0.3 86 171-256 71-158 (418)
47 KOG4658 Apoptotic ATPase [Sign 98.3 5.2E-07 1.1E-11 92.4 3.3 69 159-230 585-653 (889)
48 KOG2120 SCF ubiquitin ligase, 98.2 4.2E-08 9.2E-13 85.6 -4.6 165 171-338 185-373 (419)
49 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 52.9 3.0 36 172-208 2-37 (44)
50 PF12799 LRR_4: Leucine Rich r 98.1 4.8E-06 1E-10 52.2 3.6 41 195-237 1-41 (44)
51 PRK15386 type III secretion pr 98.0 4.2E-05 9E-10 71.2 9.1 132 162-311 45-188 (426)
52 KOG4579 Leucine-rich repeat (L 97.9 8.7E-07 1.9E-11 69.0 -1.7 89 162-256 46-135 (177)
53 KOG2982 Uncharacterized conser 97.9 4.5E-06 9.8E-11 73.1 2.3 191 130-336 71-287 (418)
54 KOG4579 Leucine-rich repeat (L 97.9 1.3E-06 2.9E-11 67.9 -0.9 130 171-317 27-163 (177)
55 KOG2120 SCF ubiquitin ligase, 97.8 1.7E-06 3.8E-11 75.7 -2.5 148 160-311 201-374 (419)
56 KOG4658 Apoptotic ATPase [Sign 97.8 1.9E-05 4.1E-10 81.1 4.1 89 163-255 565-653 (889)
57 KOG3665 ZYG-1-like serine/thre 97.7 3.1E-05 6.6E-10 77.6 3.4 128 159-295 137-266 (699)
58 KOG3665 ZYG-1-like serine/thre 97.5 7.9E-05 1.7E-09 74.7 4.2 93 161-257 165-263 (699)
59 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.3E-09 59.6 5.2 59 195-256 42-100 (233)
60 KOG1644 U2-associated snRNP A' 97.2 0.00048 1E-08 57.4 4.8 84 171-257 42-126 (233)
61 PRK15386 type III secretion pr 97.2 0.0018 4E-08 60.5 8.4 130 191-338 48-187 (426)
62 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 57.4 2.3 60 171-232 43-104 (260)
63 KOG2739 Leucine-rich acidic nu 96.3 0.0022 4.8E-08 55.6 2.0 60 171-232 65-129 (260)
64 KOG2123 Uncharacterized conser 96.0 0.00028 6.1E-09 61.6 -4.8 53 197-254 21-73 (388)
65 PF00560 LRR_1: Leucine Rich R 95.7 0.0038 8.3E-08 32.6 0.6 11 174-184 3-13 (22)
66 KOG4308 LRR-containing protein 95.7 6.6E-05 1.4E-09 72.1 -10.9 172 160-342 106-304 (478)
67 PF00560 LRR_1: Leucine Rich R 95.6 0.0072 1.6E-07 31.5 1.5 22 196-218 1-22 (22)
68 PF13306 LRR_5: Leucine rich r 95.4 0.047 1E-06 42.4 6.0 82 165-253 31-112 (129)
69 KOG4308 LRR-containing protein 94.5 0.00029 6.3E-09 67.7 -10.5 135 171-317 144-307 (478)
70 KOG2123 Uncharacterized conser 93.8 0.0038 8.3E-08 54.7 -4.0 78 172-254 20-98 (388)
71 PF13306 LRR_5: Leucine rich r 92.9 0.27 5.8E-06 38.0 5.5 84 164-253 7-90 (129)
72 PF13504 LRR_7: Leucine rich r 92.8 0.073 1.6E-06 25.8 1.4 11 221-231 3-13 (17)
73 KOG0473 Leucine-rich repeat pr 91.3 0.0041 8.8E-08 53.2 -6.9 88 164-257 37-124 (326)
74 smart00369 LRR_TYP Leucine-ric 90.7 0.27 5.8E-06 26.5 2.3 18 219-237 2-19 (26)
75 smart00370 LRR Leucine-rich re 90.7 0.27 5.8E-06 26.5 2.3 18 219-237 2-19 (26)
76 KOG0473 Leucine-rich repeat pr 90.3 0.011 2.3E-07 50.7 -5.3 88 111-232 37-124 (326)
77 smart00370 LRR Leucine-rich re 89.3 0.35 7.6E-06 26.0 2.0 18 195-213 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 89.3 0.35 7.6E-06 26.0 2.0 18 195-213 2-19 (26)
79 PF13516 LRR_6: Leucine Rich r 86.1 0.2 4.2E-06 26.5 -0.2 17 171-187 2-18 (24)
80 smart00368 LRR_RI Leucine rich 85.5 0.35 7.7E-06 26.7 0.6 18 300-317 2-19 (28)
81 KOG1947 Leucine rich repeat pr 82.2 1 2.2E-05 43.3 2.7 60 171-230 243-306 (482)
82 smart00365 LRR_SD22 Leucine-ri 76.5 2.4 5.1E-05 23.0 1.8 14 195-208 2-15 (26)
83 KOG3864 Uncharacterized conser 76.0 0.52 1.1E-05 39.7 -1.3 33 195-227 151-184 (221)
84 smart00364 LRR_BAC Leucine-ric 71.9 2.8 6.1E-05 22.7 1.4 12 197-208 4-15 (26)
85 KOG4341 F-box protein containi 70.7 2.6 5.7E-05 39.5 1.8 64 166-231 317-384 (483)
86 KOG3864 Uncharacterized conser 69.7 1.1 2.3E-05 37.9 -0.9 82 171-253 101-185 (221)
87 KOG4341 F-box protein containi 69.2 2.9 6.2E-05 39.3 1.7 36 218-253 400-435 (483)
88 KOG1947 Leucine rich repeat pr 66.3 2.9 6.2E-05 40.1 1.2 13 194-206 294-306 (482)
89 KOG4242 Predicted myosin-I-bin 65.2 14 0.0003 35.4 5.4 60 172-231 215-280 (553)
90 KOG3763 mRNA export factor TAP 54.1 7.6 0.00016 37.8 1.7 65 217-293 216-284 (585)
91 KOG3763 mRNA export factor TAP 51.5 10 0.00022 37.0 2.1 78 171-250 218-307 (585)
92 smart00367 LRR_CC Leucine-rich 45.0 18 0.00038 19.2 1.6 13 115-127 1-13 (26)
93 KOG4242 Predicted myosin-I-bin 34.4 55 0.0012 31.6 4.0 20 171-190 165-184 (553)
94 PF02950 Conotoxin: Conotoxin; 27.4 29 0.00062 24.0 0.7 8 58-65 60-67 (75)
95 PF08093 Toxin_23: Magi 5 toxi 24.0 53 0.0011 18.3 1.2 15 53-67 4-20 (30)
96 TIGR00864 PCC polycystin catio 23.7 55 0.0012 38.5 2.4 32 201-232 1-32 (2740)
97 PF07172 GRP: Glycine rich pro 22.8 36 0.00077 25.1 0.5 9 1-9 1-9 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=317.40 Aligned_cols=296 Identities=29% Similarity=0.493 Sum_probs=206.7
Q ss_pred HHHHHHHHHhhhhCCCCCCCCCCCCCCCCCccccceEeCCCCCcEEEEecCCCccccccccceeCCC-------------
Q 040876 33 ESEREALLRFKQDLQDPSNRLASWNIGGDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPR------------- 99 (343)
Q Consensus 33 ~~~~~~L~~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~------------- 99 (343)
++|++||++||+++.+|.+.+.+|+...+||.|.||+|++ .++|+.||+++. ++.|.++..
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-----~i~~~~~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-----NISGKISSAIFRLPYIQTINLS 101 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-----CccccCChHHhCCCCCCEEECC
Confidence 4899999999999988887889998888999999999986 579999999986 555554432
Q ss_pred CCCCCCCCCCcccc-CCCCCCEecCCCCC--------CCCCCcccccchh-hccccccc-----CCCcc-ccC--cccch
Q 040876 100 SMLVGKGPIPSWLY-RLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLSKC-----RTGAK-SSQ--EISDI 161 (343)
Q Consensus 100 ~n~~~~~~ip~~l~-~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~~~-----~~~~~-~~~--~~~~i 161 (343)
+|++.+. +|..+. .+++|++|++++|. .+++|++|++++| +.+.++.. ++..+ +.+ ..+.+
T Consensus 102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 6777776 887765 88888888888886 4667888888888 66422110 00000 000 11455
Q ss_pred hhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhh
Q 040876 162 FDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV 241 (343)
Q Consensus 162 p~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~ 241 (343)
|..++++ ++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|. .++
T Consensus 181 p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~ 257 (968)
T PLN00113 181 PNSLTNL--TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLG 257 (968)
T ss_pred ChhhhhC--cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHh
Confidence 6666666 6666666666666666666666666666666666666666666666666777777777666666666 666
Q ss_pred cCCCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEE
Q 040876 242 NLTKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYL 305 (343)
Q Consensus 242 ~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L 305 (343)
++++|+.|++++|.++ ++.|++++|.+.+.+|..+... +|++|++++|.+++.+|.. +++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 6677777777666653 4456777777776666666555 7777777777777666654 5677777
Q ss_pred EccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 306 DLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 306 ~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++++|.+++.+| ..++.+++|+.|++++|+++|
T Consensus 338 ~L~~n~l~~~~p----~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 338 QLWSNKFSGEIP----KNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred ECcCCCCcCcCC----hHHhCCCCCcEEECCCCeeEe
Confidence 777777776554 445667788888888887765
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.9e-26 Score=240.63 Aligned_cols=223 Identities=30% Similarity=0.419 Sum_probs=126.2
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGC 168 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l 168 (343)
+|.+++. +|..++++++|++|++++|. .+++|++|++++| +. +.+|+.++++
T Consensus 149 ~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----------------~~~p~~l~~l 211 (968)
T PLN00113 149 NNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV----------------GQIPRELGQM 211 (968)
T ss_pred CCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc----------------CcCChHHcCc
Confidence 4555554 66666677777777776665 3455666777666 55 3455555555
Q ss_pred CCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCe
Q 040876 169 VSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSV 248 (343)
Q Consensus 169 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~ 248 (343)
++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|. .+.++++|++
T Consensus 212 --~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~ 288 (968)
T PLN00113 212 --KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLIS 288 (968)
T ss_pred --CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCE
Confidence 5555555555555555555555555555555555555555555555555555555555555555554 4555555555
Q ss_pred EEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcc
Q 040876 249 FSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSF 312 (343)
Q Consensus 249 L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l 312 (343)
|++++|.++ ++.|++++|.+++.+|..+... +|+.|++++|.+++.+|.. +++|+.|++++|.+
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 555555543 3345555555555444444433 5555555555555444432 34445555555554
Q ss_pred ccccCch--------------------hhccCCccccCceEecCCCcccc
Q 040876 313 LGSISHF--------------------WCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 313 ~~~~~~~--------------------l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++.+|.. +|..+..+++|+.|++++|+++|
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 4443321 23445667788888888888765
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.6e-23 Score=194.20 Aligned_cols=208 Identities=27% Similarity=0.292 Sum_probs=161.0
Q ss_pred CCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 107 PIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 107 ~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
++|+.++.+.+|++|.+++|+ .++.|+.+.+..| +.. ..||+.+..+ ..|++|
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---------------sGiP~diF~l--~dLt~l 108 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---------------SGIPTDIFRL--KDLTIL 108 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---------------CCCCchhccc--ccceee
Confidence 488999999999999999988 5677888888877 653 5789999999 999999
Q ss_pred EeecCccccccchhccCCCCCCEEECcCCcccccCCcc-ccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCce
Q 040876 177 VLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS-LNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN 255 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~ 255 (343)
|||+|++. ..|..+...+++-.|+||+|+|. .||.. +.+++.|-.|||++|++. .+|+ ....+..|++|+|++|.
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCCh
Confidence 99999998 78999999999999999999997 67765 457889999999999997 8888 78888899999999987
Q ss_pred ee-------------------------------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccc
Q 040876 256 LT-------------------------------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSL 297 (343)
Q Consensus 256 l~-------------------------------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~ 297 (343)
+. +..+|+|.|.+. .+|+.+... +|+.|+||+|+++..-..
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~ 263 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT 263 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc
Confidence 63 222777777776 445544444 888888888888763322
Q ss_pred c--CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 298 I--SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 298 ~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
. +.+|+.|++|.|+++. +|+.+.++++|+.|.+.+|+++
T Consensus 264 ~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred HHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCccc
Confidence 2 6677788888888764 3455566666776666666653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.3e-22 Score=182.82 Aligned_cols=217 Identities=26% Similarity=0.267 Sum_probs=132.7
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhh-hhhc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFD-IFSG 167 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~-~l~~ 167 (343)
.|.++. ||...+...+|+.|+|.+|. .++.|+.|||+.| ++ .+|. .+..
T Consensus 111 ~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-----------------~i~~~sfp~ 171 (873)
T KOG4194|consen 111 KNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-----------------EIPKPSFPA 171 (873)
T ss_pred cchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-----------------cccCCCCCC
Confidence 455554 66666666667777777775 3455777777777 54 4442 3444
Q ss_pred CCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCC
Q 040876 168 CVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLS 247 (343)
Q Consensus 168 l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~ 247 (343)
- .++++|+|++|+|+..--..|..+.+|.+|.|+.|+++..-+..|.++++|+.|+|..|++. .+.-..|..+++|+
T Consensus 172 ~--~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 172 K--VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQ 248 (873)
T ss_pred C--CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhh
Confidence 3 57888888888888666667888888888888888888444456666888888888888875 33233566677777
Q ss_pred eEEecCceee------------EeEEeccCCccc------------------------ccCCCccccc-CCCeEeCcCCc
Q 040876 248 VFSVNENNLT------------LKFLDLGENQIH------------------------GEMTNLTNAT-QLWYLRLHSNN 290 (343)
Q Consensus 248 ~L~l~~n~l~------------l~~L~ls~n~l~------------------------~~~~~~~~~~-~L~~L~Ls~N~ 290 (343)
.|.+..|.+. ++.|+|..|+++ ..-++.+... +|+.|+|++|+
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 7777666653 333455555544 3333333333 45555555555
Q ss_pred ccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 291 FSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 291 l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++...+.. +..|+.|.|++|.++.... ..|..+++|++|||+.|.|++
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhhhhhcCcCCeEEE
Confidence 44433332 3444555555555443211 234456777777777777664
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.7e-23 Score=188.98 Aligned_cols=236 Identities=26% Similarity=0.214 Sum_probs=172.7
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCC-------CC---CCCcccccchh-hcccccc--cCCCcc-----ccCcccchh
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRP-------SL---ASREDQDLLSN-IRQRLSK--CRTGAK-----SSQEISDIF 162 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~-------~l---~~L~~L~l~~n-l~~~l~~--~~~~~~-----~~~~~~~ip 162 (343)
|.++.. -.+.+..++.|+.||||.|. .+ .++++|+|++| ++..-.+ ..+.+. ....+..+|
T Consensus 135 N~I~sv-~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 135 NLISSV-TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred cccccc-cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 344433 33456667777777777766 12 23677777776 5422000 000000 112234666
Q ss_pred h-hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhh
Q 040876 163 D-IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV 241 (343)
Q Consensus 163 ~-~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~ 241 (343)
. .|.++ ++|+.|+|..|+|.-.-.-.|.++++|+.|.+..|++...-...|..+.++++|+|..|+++ .+....+.
T Consensus 214 ~r~Fk~L--~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lf 290 (873)
T KOG4194|consen 214 QRSFKRL--PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLF 290 (873)
T ss_pred HHHhhhc--chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhccccc
Confidence 5 45558 88888888888887433556788888888888888888666667888999999999999998 66665778
Q ss_pred cCCCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEE
Q 040876 242 NLTKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYL 305 (343)
Q Consensus 242 ~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L 305 (343)
++++|++|+++.|.|. ++.|||++|+|+...+..+... .|++|+|+.|.++..-... +++|+.|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 8999999999999874 7889999999998878888777 9999999999998643322 7899999
Q ss_pred EccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 306 DLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 306 ~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
||++|.++..+-+ -...+..++.|+.|++.+|+|.
T Consensus 371 dLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 371 DLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred cCcCCeEEEEEec-chhhhccchhhhheeecCceee
Confidence 9999999886643 2455778999999999999874
No 6
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=6.3e-19 Score=175.68 Aligned_cols=294 Identities=17% Similarity=0.183 Sum_probs=161.5
Q ss_pred ccCCCCCCCCCcHHHHHHHHHhhhhCCCCCC---CCCCCCCCCCCccccc----------------eEeCCCCCcEEEEe
Q 040876 21 FCNGSSDHMGCLESEREALLRFKQDLQDPSN---RLASWNIGGDCCTWAG----------------IVCDNVTGHIIELN 81 (343)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~L~~~k~~~~~~~~---~~~~W~~~~~~c~w~g----------------v~c~~~~~~v~~l~ 81 (343)
.|++ +.+..++|.+.+.++.+.+..|.. ..+.|+...++|.-.. |.|. .+.||.+.
T Consensus 53 ~~~~---~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~ 127 (754)
T PRK15370 53 LCHP---PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTR 127 (754)
T ss_pred HhCC---CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccc
Confidence 3555 566778999999999999877642 2344988888895443 5563 24555555
Q ss_pred cCCCccc-------------------ccc-c---------------------cceeCCCCCCCCCCCCCccccCCCCCCE
Q 040876 82 LRNPFTY-------------------YRR-S---------------------RYKANPRSMLVGKGPIPSWLYRLTHLEQ 120 (343)
Q Consensus 82 l~~~~~~-------------------~~~-~---------------------~g~~~~~~n~~~~~~ip~~l~~l~~L~~ 120 (343)
.-|.... ... - ...+-...+.++. +|..+. ++|+.
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~ 203 (754)
T PRK15370 128 VTESEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQITT 203 (754)
T ss_pred cccccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cCCcE
Confidence 5442100 000 0 0000000344443 565543 46778
Q ss_pred ecCCCCC-------CCCCCcccccchh-hccccccc---CCC--ccccCcccchhhhhhcCCCCCccEEEeecCcccccc
Q 040876 121 LSVADRP-------SLASREDQDLLSN-IRQRLSKC---RTG--AKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHL 187 (343)
Q Consensus 121 L~Ls~n~-------~l~~L~~L~l~~n-l~~~l~~~---~~~--~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~ 187 (343)
|++++|. ...+|+.|++++| ++.. +.. .+. .+....+..+|..+. ++|+.|++++|+++ .+
T Consensus 204 L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsL-P~~l~~~L~~L~Ls~N~L~~LP~~l~----s~L~~L~Ls~N~L~-~L 277 (754)
T PRK15370 204 LILDNNELKSLPENLQGNIKTLYANSNQLTSI-PATLPDTIQEMELSINRITELPERLP----SALQSLDLFHNKIS-CL 277 (754)
T ss_pred EEecCCCCCcCChhhccCCCEEECCCCccccC-ChhhhccccEEECcCCccCcCChhHh----CCCCEEECcCCccC-cc
Confidence 8888776 1235777777777 5510 000 000 000001123333332 34555555555555 34
Q ss_pred chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee---------E
Q 040876 188 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT---------L 258 (343)
Q Consensus 188 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~---------l 258 (343)
|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|.++ .+|. .+ .++|+.|++++|.++ +
T Consensus 278 P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~-~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL 348 (754)
T PRK15370 278 PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPE-TL--PPGLKTLEAGENALTSLPASLPPEL 348 (754)
T ss_pred ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCc-cc--cccceeccccCCccccCChhhcCcc
Confidence 44332 34555555555554 2333221 24555555555554 3443 11 246677777776653 5
Q ss_pred eEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCchhhccCCccccCceEecCCC
Q 040876 259 KFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 259 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
+.|++++|+|+. +|..+. .+|+.|++++|+++..++.....|++|++++|+++ .+|..++.....++.+..+++.+|
T Consensus 349 ~~L~Ls~N~L~~-LP~~lp-~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 349 QVLDVSKNQITV-LPETLP-PTITTLDVSRNALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cEEECCCCCCCc-CChhhc-CCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCC
Confidence 667777777763 443221 26777888888777544333456777888888877 466667766667788899999999
Q ss_pred ccc
Q 040876 339 YLQ 341 (343)
Q Consensus 339 ~l~ 341 (343)
+|+
T Consensus 426 pls 428 (754)
T PRK15370 426 PFS 428 (754)
T ss_pred Ccc
Confidence 875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.3e-21 Score=181.25 Aligned_cols=213 Identities=25% Similarity=0.288 Sum_probs=149.9
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC--C-------CCCCcccccchh-hcccccccCCCccccCcccchhhh-hhcC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP--S-------LASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDI-FSGC 168 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--~-------l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~-l~~l 168 (343)
.|++....||+.+.++..|+.||||+|+ . -.++-+|+||+| +. .||.. +.++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-----------------tIPn~lfinL 149 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-----------------TIPNSLFINL 149 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-----------------cCCchHHHhh
Confidence 5677655599999999999999999998 2 234667888888 65 55543 3345
Q ss_pred CCCCccEEEeecCccccccchhccCCCCCCEEECcCCccc-------------------------ccCCccccCCCCCcE
Q 040876 169 VSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIV-------------------------GLVPLSLNELSKLRI 223 (343)
Q Consensus 169 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-------------------------~~~p~~l~~l~~L~~ 223 (343)
..|-+||||+|++. .+|+.+.++..|++|+|++|.+. .-+|.++..+.+|..
T Consensus 150 --tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 150 --TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred --HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 55666666666666 55666666666666666666442 236777888889999
Q ss_pred EEccCccCccccChHhhhcCCCCCeEEecCceee-----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcc
Q 040876 224 LHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNF 291 (343)
Q Consensus 224 L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l 291 (343)
+|++.|.+. .+|+ .+.++++|+.|+|++|+|+ ++.|++|.|+++. +|+..-.. +|+.|.+.+|++
T Consensus 227 vDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ccccccCCC-cchH-HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcc
Confidence 999999997 7888 8889999999999999987 5669999999984 45444444 888999999987
Q ss_pred cC-ccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 292 SG-PLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 292 ~~-~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+- -+|.. +.+|+.+..++|.+.- .|+.++++..|+.|.|+.|++
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LEl-----VPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLEL-----VPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhcccccc-----CchhhhhhHHHHHhcccccce
Confidence 62 23333 5556666666666542 234555566666666666654
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.6e-18 Score=170.57 Aligned_cols=212 Identities=20% Similarity=0.221 Sum_probs=122.6
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC------CCCCCcccccchh-hcccccc-cCCCc--cccCcccchhhhhhcCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP------SLASREDQDLLSN-IRQRLSK-CRTGA--KSSQEISDIFDIFSGCV 169 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~------~l~~L~~L~l~~n-l~~~l~~-~~~~~--~~~~~~~~ip~~l~~l~ 169 (343)
.|+++. +|.. .++|++|++++|+ ..++|+.|++++| +...-.. ..+.. +....+..+|.. .
T Consensus 231 ~N~Lt~--LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p- 301 (788)
T PRK15387 231 DNNLTS--LPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---P- 301 (788)
T ss_pred CCcCCC--CCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccccc---c-
Confidence 455554 5542 4667777777775 2234666777666 5420000 00000 000001223321 1
Q ss_pred CCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 170 SKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 170 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++|++|++++|++++ +|... ..|+.|++++|.++ .+|.. ..+|++|++++|+++ .+|. . .++|+.|
T Consensus 302 -~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~-l---p~~L~~L 367 (788)
T PRK15387 302 -PGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPT-L---PSELYKL 367 (788)
T ss_pred -cccceeECCCCcccc-CCCCc---ccccccccccCccc-ccccc---ccccceEecCCCccC-CCCC-C---Cccccee
Confidence 345555555555552 33211 23445555555554 23321 136777777777776 5664 2 3456667
Q ss_pred EecCceee--------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCchhh
Q 040876 250 SVNENNLT--------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISHFWC 321 (343)
Q Consensus 250 ~l~~n~l~--------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~ 321 (343)
++++|.++ ++.|++++|+|++ +|... .+|+.|++++|++++ +|..+.+|+.|++++|+++. +|
T Consensus 368 ~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l~--s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~-----LP 438 (788)
T PRK15387 368 WAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLP--SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTR-----LP 438 (788)
T ss_pred hhhccccccCcccccccceEEecCCcccC-CCCcc--cCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccc-----cC
Confidence 77777663 5667888888774 44322 268888888888875 45556678888888888873 35
Q ss_pred ccCCccccCceEecCCCccccC
Q 040876 322 YRSNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 322 ~~l~~l~~L~~L~ls~N~l~g~ 343 (343)
..+.+++.|+.|++++|+|+|.
T Consensus 439 ~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hHHhhccCCCeEECCCCCCCch
Confidence 6677899999999999999873
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=2.6e-20 Score=166.20 Aligned_cols=146 Identities=25% Similarity=0.338 Sum_probs=90.0
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hcccccccCCC-------ccccCcccchh
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLSKCRTG-------AKSSQEISDIF 162 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~~~~~~-------~~~~~~~~~ip 162 (343)
+|+++. +|+.++++.+|..+++.+|. .+..|+.+|...| ++. ++-.--+ ..-...+..+|
T Consensus 146 ~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 146 NNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccccCC
Confidence 445544 56666666666666666665 2334666666666 331 0000000 00011112344
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhcc-CCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhh
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIG-HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV 241 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~ 241 (343)
+|.++ ..|++++++.|+|. .+|.+.. ++.++.+||+.+|+++ +.|.++..+++|..||+++|.++ .+|. .++
T Consensus 223 -ef~gc--s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~-sLg 295 (565)
T KOG0472|consen 223 -EFPGC--SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY-SLG 295 (565)
T ss_pred -CCCcc--HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc-ccc
Confidence 44555 55555555555555 4555544 7788888888888888 78888888888888899988887 6777 788
Q ss_pred cCCCCCeEEecCcee
Q 040876 242 NLTKLSVFSVNENNL 256 (343)
Q Consensus 242 ~l~~L~~L~l~~n~l 256 (343)
++ +|+.|.+.+|.+
T Consensus 296 nl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPL 309 (565)
T ss_pred cc-eeeehhhcCCch
Confidence 88 888888888876
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=6.4e-21 Score=170.00 Aligned_cols=209 Identities=28% Similarity=0.328 Sum_probs=151.0
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCC
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVS 170 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~ 170 (343)
|++.. +|++++.+..++.+++++|+ .+.+++.+++++| +. ++|+.++.+
T Consensus 78 n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-----------------el~~~i~~~-- 136 (565)
T KOG0472|consen 78 NKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-----------------ELPDSIGRL-- 136 (565)
T ss_pred chhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-----------------ecCchHHHH--
Confidence 45543 78888888888888888887 3445777777777 55 667777777
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
..++.++..+|+++ .+|+.+..+.+|..+++.+|++.. .|+..-+++.|++++...|.+. .+|+ .++.+.+|..|+
T Consensus 137 ~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPP-ELGGLESLELLY 212 (565)
T ss_pred hhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCCh-hhcchhhhHHHH
Confidence 67777777777777 566777777777777777777773 3333334777777777777765 6777 677777777777
Q ss_pred ecCceee----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccC
Q 040876 251 VNENNLT----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSIS 317 (343)
Q Consensus 251 l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~ 317 (343)
+.+|++. ++.+++..|+|.-...+..+.. ++..|||.+|+++..+... +++|++||+|+|.|++.
T Consensus 213 L~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L-- 290 (565)
T KOG0472|consen 213 LRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL-- 290 (565)
T ss_pred hhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC--
Confidence 7777764 3446777777763333344445 8999999999998765554 68899999999999873
Q ss_pred chhhccCCccccCceEecCCCcc
Q 040876 318 HFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 318 ~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
|..++++ +|+.|-+.+|++
T Consensus 291 ---p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 291 ---PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ---Ccccccc-eeeehhhcCCch
Confidence 5678888 899999999986
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.3e-17 Score=152.68 Aligned_cols=222 Identities=22% Similarity=0.252 Sum_probs=140.4
Q ss_pred CCccccCCCCCCEecCCCCC--------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCC
Q 040876 108 IPSWLYRLTHLEQLSVADRP--------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKG 172 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~--------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~ 172 (343)
.+..+..++.|++|+++++. ..+.++.++++.+ +.+ ....+..++..+..+ ++
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~----------~~~~~~~~~~~l~~~--~~ 82 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR----------IPRGLQSLLQGLTKG--CG 82 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC----------cchHHHHHHHHHHhc--Cc
Confidence 45555666667777777766 2333555665555 321 001113455666666 78
Q ss_pred ccEEEeecCccccccchhccCCCC---CCEEECcCCcccc----cCCccccCC-CCCcEEEccCccCccc----cChHhh
Q 040876 173 LEILVLRSSSISGHLTEQIGHFKN---LDTLDLGNNSIVG----LVPLSLNEL-SKLRILHLSDNKLNGT----LSEIHF 240 (343)
Q Consensus 173 L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~l~~N~l~g~----~p~~~~ 240 (343)
|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++. .+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~ 161 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-AL 161 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HH
Confidence 888888888777655655555544 8888888887763 223344555 7788888888877632 222 45
Q ss_pred hcCCCCCeEEecCceee----------------EeEEeccCCccccc----CCCccccc-CCCeEeCcCCcccCcccc--
Q 040876 241 VNLTKLSVFSVNENNLT----------------LKFLDLGENQIHGE----MTNLTNAT-QLWYLRLHSNNFSGPLSL-- 297 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~----------------l~~L~ls~n~l~~~----~~~~~~~~-~L~~L~Ls~N~l~~~~~~-- 297 (343)
..+++|++|++++|.++ ++.|++++|.+++. ++..+... +|++|++++|.+++....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 55667888888777654 56678888877642 22223333 788888888888752111
Q ss_pred --c----CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 298 --I----SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 298 --~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
. .+.|+.|++++|.+++.....++..+..+++|+++++++|.++.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 1 26788888888888754444455556667888888888888764
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=9.5e-16 Score=151.86 Aligned_cols=153 Identities=29% Similarity=0.446 Sum_probs=119.1
Q ss_pred CCCcHHHHHHHHHhhhhCCCCCCCCCCCCCCCCCc----cccceEeCC--CC--CcEEEEecCCCccccccccceeCCCC
Q 040876 29 MGCLESEREALLRFKQDLQDPSNRLASWNIGGDCC----TWAGIVCDN--VT--GHIIELNLRNPFTYYRRSRYKANPRS 100 (343)
Q Consensus 29 ~~~~~~~~~~L~~~k~~~~~~~~~~~~W~~~~~~c----~w~gv~c~~--~~--~~v~~l~l~~~~~~~~~~~g~~~~~~ 100 (343)
.++.++|.+||+.+|+.+.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCC---------------
Confidence 45677899999999999876542 4794 44443 799999952 22 25888998875
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeec
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRS 180 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~ 180 (343)
.+.+. +|..++++++|++|+|++|. +. +.+|+.++.+ ++|+.|+|++
T Consensus 429 -~L~g~-ip~~i~~L~~L~~L~Ls~N~-------------l~----------------g~iP~~~~~l--~~L~~LdLs~ 475 (623)
T PLN03150 429 -GLRGF-IPNDISKLRHLQSINLSGNS-------------IR----------------GNIPPSLGSI--TSLEVLDLSY 475 (623)
T ss_pred -Ccccc-CCHHHhCCCCCCEEECCCCc-------------cc----------------CcCChHHhCC--CCCCEEECCC
Confidence 55554 88888888888888888876 33 5788888888 8899999999
Q ss_pred CccccccchhccCCCCCCEEECcCCcccccCCccccCC-CCCcEEEccCccCc
Q 040876 181 SSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL-SKLRILHLSDNKLN 232 (343)
Q Consensus 181 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~ 232 (343)
|+++|.+|+.++++++|++|+|++|+++|.+|..++.. .++..+++.+|...
T Consensus 476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 99888888888888899999999998888888887654 46677888887654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.8e-15 Score=150.55 Aligned_cols=207 Identities=21% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC------CCCCCcccccchh-hcccccc--cCCCc--cccCcccchhhhhhcC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP------SLASREDQDLLSN-IRQRLSK--CRTGA--KSSQEISDIFDIFSGC 168 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~------~l~~L~~L~l~~n-l~~~l~~--~~~~~--~~~~~~~~ip~~l~~l 168 (343)
.+.++. +|+.+. ++|+.|++++|+ ..++|++|++++| ++.. +. ..+.. +....+..+|...
T Consensus 210 ~~~Lts--LP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp--- 281 (788)
T PRK15387 210 ESGLTT--LPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALP--- 281 (788)
T ss_pred CCCCCc--CCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhch---
Confidence 556664 888776 489999999998 3467899999999 7621 00 00000 0000112222211
Q ss_pred CCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCe
Q 040876 169 VSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSV 248 (343)
Q Consensus 169 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~ 248 (343)
++|+.|++++|+++ .+|.. .++|++|++++|+++ .+|.. ..+|+.|++++|.++ .+|. . ..+|+.
T Consensus 282 --~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~-~LP~-l---p~~Lq~ 346 (788)
T PRK15387 282 --SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLT-SLPT-L---PSGLQE 346 (788)
T ss_pred --hhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC---cccccccccccCccc-cccc-c---ccccce
Confidence 33445555555555 23331 245666666666665 23332 124555566666665 4553 1 235677
Q ss_pred EEecCceee--------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCchh
Q 040876 249 FSVNENNLT--------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISHFW 320 (343)
Q Consensus 249 L~l~~n~l~--------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l 320 (343)
|++++|+++ ++.|++++|+++. +|... .+|+.|++++|++++ +|...++|+.|++++|.++. +|.
T Consensus 347 LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~l~--~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Lss-IP~-- 419 (788)
T PRK15387 347 LSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPALP--SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLTS-LPM-- 419 (788)
T ss_pred EecCCCccCCCCCCCcccceehhhcccccc-Ccccc--cccceEEecCCcccC-CCCcccCCCEEEccCCcCCC-CCc--
Confidence 777777664 3456677777763 44321 267788888888775 44455678888888888764 432
Q ss_pred hccCCccccCceEecCCCccc
Q 040876 321 CYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 321 ~~~l~~l~~L~~L~ls~N~l~ 341 (343)
. ..+|+.|++++|+|+
T Consensus 420 --l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 420 --L---PSGLLSLSVYRNQLT 435 (788)
T ss_pred --c---hhhhhhhhhccCccc
Confidence 1 235777888888775
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=6.5e-15 Score=155.62 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=121.2
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCV 169 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~ 169 (343)
+|.+.. +|..+..+++|++|+|+++. .+++|+.|++++| .. ..+|..+..+
T Consensus 620 ~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L----------------~~lp~si~~L- 680 (1153)
T PLN03210 620 GSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL----------------VELPSSIQYL- 680 (1153)
T ss_pred Cccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc----------------cccchhhhcc-
Confidence 344443 56666777777777777654 3345666666665 21 3677777777
Q ss_pred CCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 170 SKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 170 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++|+.|++++|..-..+|..+ ++++|++|++++|...+.+|.. ..+|++|++++|.+. .+|. .+ .+++|+.|
T Consensus 681 -~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L 752 (1153)
T PLN03210 681 -NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPS-NL-RLENLDEL 752 (1153)
T ss_pred -CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccc-cc-cccccccc
Confidence 888888888765444666655 6777888888777655555542 346777777777765 5664 22 34444444
Q ss_pred EecCce-------------------eeEeEEeccCCcccccCCCccccc-CCCeEeCcCC--------------------
Q 040876 250 SVNENN-------------------LTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSN-------------------- 289 (343)
Q Consensus 250 ~l~~n~-------------------l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N-------------------- 289 (343)
++..+. -.++.|++++|...+.+|..+..+ +|+.|++++|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~L 832 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDL 832 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEEC
Confidence 443311 023445555554444444444444 5555555544
Q ss_pred ---cccCcccccCCCCcEEEccCCccccccCchhhccCCccccCceEecCC
Q 040876 290 ---NFSGPLSLISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGD 337 (343)
Q Consensus 290 ---~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~ 337 (343)
.....+|....+|++|+|++|.++. +|.++..+++|+.|++++
T Consensus 833 s~c~~L~~~p~~~~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 833 SGCSRLRTFPDISTNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCccccccccccccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCC
Confidence 3333334444556666666666653 345667778888888877
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=2.9e-16 Score=143.68 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=144.1
Q ss_pred CCccccCCCCCCEecCCCCC----------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCC
Q 040876 108 IPSWLYRLTHLEQLSVADRP----------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVS 170 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~----------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~ 170 (343)
++..+...+++++++++++. .+++|+.|++++| +. +..+..+..+
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----------------~~~~~~~~~l-- 104 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG----------------PDGCGVLESL-- 104 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC----------------hhHHHHHHHH--
Confidence 45555666667777776653 2335666666666 54 2444555554
Q ss_pred CC---ccEEEeecCcccc----ccchhccCC-CCCCEEECcCCccccc----CCccccCCCCCcEEEccCccCccc----
Q 040876 171 KG---LEILVLRSSSISG----HLTEQIGHF-KNLDTLDLGNNSIVGL----VPLSLNELSKLRILHLSDNKLNGT---- 234 (343)
Q Consensus 171 ~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~g~---- 234 (343)
.. |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44 8888888888773 333445666 7888888888888743 333455667888888888888742
Q ss_pred cChHhhhcCCCCCeEEecCceee----------------EeEEeccCCcccccC----CCccc--ccCCCeEeCcCCccc
Q 040876 235 LSEIHFVNLTKLSVFSVNENNLT----------------LKFLDLGENQIHGEM----TNLTN--ATQLWYLRLHSNNFS 292 (343)
Q Consensus 235 ~p~~~~~~l~~L~~L~l~~n~l~----------------l~~L~ls~n~l~~~~----~~~~~--~~~L~~L~Ls~N~l~ 292 (343)
++. .+...++|++|++++|.++ ++.|++++|.+++.. ...+. ...|++|++++|.++
T Consensus 185 l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 185 LAE-GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHH-HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 222 3445568888888888763 667888888887521 11111 138999999999997
Q ss_pred Cc----ccc---cCCCCcEEEccCCccccccCchhhccCCcc-ccCceEecCCCcc
Q 040876 293 GP----LSL---ISSNLVYLDLFNNSFLGSISHFWCYRSNET-KRLRALSLGDNYL 340 (343)
Q Consensus 293 ~~----~~~---~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l-~~L~~L~ls~N~l 340 (343)
.. +.. .+++|+++++++|.++......+...+... +.|+.+++.+|.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 31 111 257899999999999987655666666666 7899999999875
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=133.17 Aligned_cols=151 Identities=32% Similarity=0.416 Sum_probs=115.6
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
..++.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. .+|. .|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhh
Confidence 67888889999988 67888889999999999999988 78888999999999999999887 7887 888899888888
Q ss_pred ecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhccCCcc
Q 040876 251 VNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYRSNET 327 (343)
Q Consensus 251 l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l 327 (343)
+..|++. .| .+|.-+..+ .|+.|+|++|.|.-.+|+. +++|+.|.+.+|.+-. +|..++.+
T Consensus 109 ltynnl~-------e~----~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-----lpkeig~l 172 (264)
T KOG0617|consen 109 LTYNNLN-------EN----SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-----LPKEIGDL 172 (264)
T ss_pred ccccccc-------cc----cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-----CcHHHHHH
Confidence 7776553 11 334434334 7778888888877655554 7778888888777653 34556677
Q ss_pred ccCceEecCCCccc
Q 040876 328 KRLRALSLGDNYLQ 341 (343)
Q Consensus 328 ~~L~~L~ls~N~l~ 341 (343)
.+|++|.+++|+++
T Consensus 173 t~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 173 TRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHhcccceee
Confidence 77888888888764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=4.2e-15 Score=148.50 Aligned_cols=165 Identities=19% Similarity=0.278 Sum_probs=84.9
Q ss_pred CCCCEecCCCCC--CC-----CCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccccc
Q 040876 116 THLEQLSVADRP--SL-----ASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHL 187 (343)
Q Consensus 116 ~~L~~L~Ls~n~--~l-----~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~ 187 (343)
.+...|+++++. .+ ..++.|++++| ++ .+|..+. ++|++|++++|+++ .+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-----------------sLP~~l~----~nL~~L~Ls~N~Lt-sL 235 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-----------------SLPENLQ----GNIKTLYANSNQLT-SI 235 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-----------------cCChhhc----cCCCEEECCCCccc-cC
Confidence 356778888776 22 24788888888 66 4444332 45666666666665 34
Q ss_pred chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee---------E
Q 040876 188 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT---------L 258 (343)
Q Consensus 188 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~---------l 258 (343)
|..+. ..|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|. .+ .++|+.|++++|+++ +
T Consensus 236 P~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~-~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL 306 (754)
T PRK15370 236 PATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPE-NL--PEELRYLSVYDNSIRTLPAHLPSGI 306 (754)
T ss_pred Chhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccc-cc--CCCCcEEECCCCccccCcccchhhH
Confidence 54332 24566666666655 4454432 35566666666555 4554 22 135555555555543 2
Q ss_pred eEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccc
Q 040876 259 KFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFL 313 (343)
Q Consensus 259 ~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~ 313 (343)
+.|++++|+++. +|..+. .+|+.|++++|.+++.+....++|+.|++++|.++
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 307 THLNVQSNSLTA-LPETLP-PGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT 359 (754)
T ss_pred HHHHhcCCcccc-CCcccc-ccceeccccCCccccCChhhcCcccEEECCCCCCC
Confidence 334555555543 222110 14555555555554422222344555555555444
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=6e-17 Score=157.81 Aligned_cols=188 Identities=29% Similarity=0.391 Sum_probs=137.7
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCV 169 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~ 169 (343)
.|++++ +|++++.+.+|+.++..+|. ...+|+.|....| +. -+|+...++
T Consensus 250 ~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-----------------yip~~le~~- 309 (1081)
T KOG0618|consen 250 HNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-----------------YIPPFLEGL- 309 (1081)
T ss_pred hhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-----------------hCCCccccc-
Confidence 677776 78888999999999998887 3445677777766 54 677777777
Q ss_pred CCCccEEEeecCccccccchhcc--------------------------CCCCCCEEECcCCcccccCCccccCCCCCcE
Q 040876 170 SKGLEILVLRSSSISGHLTEQIG--------------------------HFKNLDTLDLGNNSIVGLVPLSLNELSKLRI 223 (343)
Q Consensus 170 ~~~L~~L~L~~n~l~~~~p~~l~--------------------------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 223 (343)
+.|++|+|..|.+. .+|+.+- .++.|+.|++.+|.++...-+.+.++++|+.
T Consensus 310 -~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 310 -KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred -ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 88888888888877 3333211 1345777888888888777777888888999
Q ss_pred EEccCccCccccChHhhhcCCCCCeEEecCceee-----------EeEEeccCCcccccCCCcccccCCCeEeCcCCccc
Q 040876 224 LHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFS 292 (343)
Q Consensus 224 L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~ 292 (343)
|+|++|++. .+|+..+.++..|++|++++|+++ +++|...+|++. .+|+......|+.+|++.|+++
T Consensus 388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhh
Confidence 999999886 888878888888888888888875 555667777766 4555444447778888877777
Q ss_pred C-ccccc--CCCCcEEEccCCc
Q 040876 293 G-PLSLI--SSNLVYLDLFNNS 311 (343)
Q Consensus 293 ~-~~~~~--~~~L~~L~Ls~N~ 311 (343)
. .+|.. .++|++||+++|.
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCc
Confidence 5 33333 2677788887776
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=3.2e-16 Score=152.82 Aligned_cols=176 Identities=24% Similarity=0.300 Sum_probs=114.6
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
..+|+.++.+ .+|+.++..+|+++ .+|..+..+++|+.|++..|.+. .+|.....+++|++|+|..|++. .+|+.
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred hcchHHHHhc--ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchH
Confidence 3778888888 88888888888886 78888888888888888888887 67777778888888888888886 77764
Q ss_pred hhhcCCC-CCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCC
Q 040876 239 HFVNLTK-LSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSN 301 (343)
Q Consensus 239 ~~~~l~~-L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~ 301 (343)
.+..... |+.|+.+.|.+. ++.|.+.+|.++...-..+... +|+.|+|++|++...+... +..
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 4433332 455555555442 3346666666665432233333 6666666666665433222 344
Q ss_pred CcEEEccCCccccccC-------------------chhhccCCccccCceEecCCCccc
Q 040876 302 LVYLDLFNNSFLGSIS-------------------HFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 302 L~~L~Ls~N~l~~~~~-------------------~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
|+.|+||+|+++. +| ..+| .+.+++.|+.+|+|.|+|+
T Consensus 409 LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 409 LEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 5566666666553 22 1234 4566777777777777664
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=9.6e-16 Score=136.91 Aligned_cols=215 Identities=21% Similarity=0.214 Sum_probs=120.1
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccch-h-hcccccccCCCccccCcccchhh-hhh
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLS-N-IRQRLSKCRTGAKSSQEISDIFD-IFS 166 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~-n-l~~~l~~~~~~~~~~~~~~~ip~-~l~ 166 (343)
.|.++.. -|..|+.+++|+.||||+|. .+.++..|-+.+ | |+ .+|+ .|.
T Consensus 76 qN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-----------------~l~k~~F~ 137 (498)
T KOG4237|consen 76 QNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-----------------DLPKGAFG 137 (498)
T ss_pred cCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-----------------hhhhhHhh
Confidence 3567663 34568999999999999998 233333332222 3 43 4453 455
Q ss_pred cCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCc-cccCCCCCcEEEccCccCcc------------
Q 040876 167 GCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPL-SLNELSKLRILHLSDNKLNG------------ 233 (343)
Q Consensus 167 ~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~g------------ 233 (343)
++ ..++.|.+.-|++.-...+.+..+++|..|.+.+|.+. .++. .+..+..++++.+..|.+--
T Consensus 138 gL--~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 138 GL--SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hH--HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 55 56666666666666555556666666666666666665 3333 55556666666665555210
Q ss_pred ccChHhhhcCCCCCeEEecCcee--------------------------------------eEeEEeccCCcccccCCCc
Q 040876 234 TLSEIHFVNLTKLSVFSVNENNL--------------------------------------TLKFLDLGENQIHGEMTNL 275 (343)
Q Consensus 234 ~~p~~~~~~l~~L~~L~l~~n~l--------------------------------------~l~~L~ls~n~l~~~~~~~ 275 (343)
..|. .++..+...-..+..+++ .++.+++++|++++.-+.+
T Consensus 215 ~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 215 MNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 0000 000000000000000000 0344666667776665666
Q ss_pred cccc-CCCeEeCcCCcccCc---ccccCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 276 TNAT-QLWYLRLHSNNFSGP---LSLISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 276 ~~~~-~L~~L~Ls~N~l~~~---~~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+... .+++|.|..|++... +-..+..|+.|+|.+|+|+...| ..|..+..|..|++-.|.+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~----~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP----GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec----ccccccceeeeeehccCcc
Confidence 6655 777777777776532 22225677778888888876654 4456667777777777765
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=2.5e-13 Score=143.65 Aligned_cols=142 Identities=23% Similarity=0.194 Sum_probs=69.2
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
++|++|++++|.....+|..+..+++|++|++++|.....+|..+ ++++|+.|++++|...+.+|. ..++|+.|+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~ 731 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLD 731 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeee
Confidence 455555555444333445555555555555555443333444433 444555555555443333332 123444455
Q ss_pred ecCceee----------EeEEeccCCc---ccc----cCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccC
Q 040876 251 VNENNLT----------LKFLDLGENQ---IHG----EMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFN 309 (343)
Q Consensus 251 l~~n~l~----------l~~L~ls~n~---l~~----~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~ 309 (343)
+++|.++ +..|++.++. +.+ ..+...... +|+.|++++|...+.+|.. +++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 5444432 1112222211 000 011111122 7888888888777777765 67888899988
Q ss_pred CccccccC
Q 040876 310 NSFLGSIS 317 (343)
Q Consensus 310 N~l~~~~~ 317 (343)
|...+.+|
T Consensus 812 C~~L~~LP 819 (1153)
T PLN03210 812 CINLETLP 819 (1153)
T ss_pred CCCcCeeC
Confidence 76444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3e-16 Score=125.46 Aligned_cols=137 Identities=23% Similarity=0.335 Sum_probs=86.1
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc-ccChH
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG-TLSEI 238 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g-~~p~~ 238 (343)
.+|+.+..+ .+|++|++++|+++ .+|..++.+++|++|+++-|++. ..|.+|+.++.|+.||+.+|++.. .+|.
T Consensus 47 ~vppnia~l--~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpg- 121 (264)
T KOG0617|consen 47 VVPPNIAEL--KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPG- 121 (264)
T ss_pred ecCCcHHHh--hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCc-
Confidence 667777777 77777777777777 67777777777777777777776 667777777777777777777653 2444
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCcccc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~ 314 (343)
.|..++.|+.|.+++|.+. .+|...+.. +|+.|.+..|.+-..+... +..|++|++.+|+++-
T Consensus 122 nff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred chhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 4555666666655554432 233333333 6666666666655432222 4556666666666653
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=8.3e-13 Score=116.66 Aligned_cols=217 Identities=20% Similarity=0.228 Sum_probs=157.5
Q ss_pred CccccCCCCCCEecCCCCC--------------CCCCCcccccchhhcccccccCCCccccCcccchhh-------hhhc
Q 040876 109 PSWLYRLTHLEQLSVADRP--------------SLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFD-------IFSG 167 (343)
Q Consensus 109 p~~l~~l~~L~~L~Ls~n~--------------~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~-------~l~~ 167 (343)
-+.+..+..++.++||+|. ..+.|+..++++-++|++. ..+|+ .+.+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~------------~Ei~e~L~~l~~aL~~ 90 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLK------------DEIPEALKMLSKALLG 90 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcH------------HHHHHHHHHHHHHHhc
Confidence 3446678889999999998 4556777787776665432 24444 4456
Q ss_pred CCCCCccEEEeecCccccccchh----ccCCCCCCEEECcCCcccccCC-------------ccccCCCCCcEEEccCcc
Q 040876 168 CVSKGLEILVLRSSSISGHLTEQ----IGHFKNLDTLDLGNNSIVGLVP-------------LSLNELSKLRILHLSDNK 230 (343)
Q Consensus 168 l~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~L~l~~N~ 230 (343)
+ ++|++++||+|-+....++. +.++..|++|+|.+|.+...-- .-.+.-+.|+++...+|+
T Consensus 91 ~--~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 91 C--PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred C--CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 6 79999999999988555543 4678999999999998862211 123345789999999999
Q ss_pred CccccCh----HhhhcCCCCCeEEecCceee----------------EeEEeccCCccccc----CCCccccc-CCCeEe
Q 040876 231 LNGTLSE----IHFVNLTKLSVFSVNENNLT----------------LKFLDLGENQIHGE----MTNLTNAT-QLWYLR 285 (343)
Q Consensus 231 l~g~~p~----~~~~~l~~L~~L~l~~n~l~----------------l~~L~ls~n~l~~~----~~~~~~~~-~L~~L~ 285 (343)
+. .-+. ..|...+.|+.+.+++|.|. +++||+..|-|+.. +...+... +|+.|+
T Consensus 169 le-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 85 3222 25677789999999999874 77799999988742 22233333 789999
Q ss_pred CcCCcccCcccc--------cCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 286 LHSNNFSGPLSL--------ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 286 Ls~N~l~~~~~~--------~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+++|.+...... ..++|+.|.+.+|.++......+...+...+.|..|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999988743221 2678999999999998765555555667788999999999988
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-13 Score=121.49 Aligned_cols=58 Identities=24% Similarity=0.115 Sum_probs=43.4
Q ss_pred CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 280 QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 280 ~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
+|+.|+|++|++++.-+.. ...+++|.|..|++...- ...|..+..|+.|+|.+|+|+
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~----~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS----SGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH----HHhhhccccceeeeecCCeeE
Confidence 7888888888888755554 567788888888875432 234677889999999999986
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=3.8e-13 Score=125.47 Aligned_cols=130 Identities=27% Similarity=0.359 Sum_probs=97.7
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.||..+.++ ..|.++||+.|+++ .+|..++.++ |+.|.+++|+++ .+|+.++....|..|+.+.|.+. .+|. .
T Consensus 112 ~ip~~i~~L--~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps-q 184 (722)
T KOG0532|consen 112 TIPEAICNL--EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS-Q 184 (722)
T ss_pred ecchhhhhh--hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH-H
Confidence 788888888 88888888888888 7787777665 788888888887 78888888888888888888887 7777 7
Q ss_pred hhcCCCCCeEEecCceee----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccc
Q 040876 240 FVNLTKLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSL 297 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~ 297 (343)
++.+.+|+.|.+..|++. +..||++.|+++ .+|-.+..+ .|++|-|.+|.+..++..
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 788888888888877653 445666666665 444444444 666666666666654443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2e-13 Score=127.36 Aligned_cols=148 Identities=27% Similarity=0.337 Sum_probs=113.5
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
.++|..+..+ ..|+.+.|+.|.+. .+|..++++..|++||++.|+++ .+|..+..++ |+.|.+++|+++ .+|+
T Consensus 88 ~elp~~~~~f--~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~- 160 (722)
T KOG0532|consen 88 SELPEEACAF--VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPE- 160 (722)
T ss_pred ccCchHHHHH--HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCc-
Confidence 3889988888 88999999999998 89999999999999999999998 8899998888 999999999997 8998
Q ss_pred hhhcCCCCCeEEecCceee-----------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc--CCCCcEE
Q 040876 239 HFVNLTKLSVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI--SSNLVYL 305 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~L 305 (343)
.++...+|..|+.+.|.+. ++.|.+..|++... |..+..+.|..||++.|+++..+..+ ++.|++|
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVL 239 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCCceeeeecccCceeecchhhhhhhhheee
Confidence 7788889999888887763 33455566665533 33333336666666666666543333 5666666
Q ss_pred EccCCcccc
Q 040876 306 DLFNNSFLG 314 (343)
Q Consensus 306 ~Ls~N~l~~ 314 (343)
-|.+|.+..
T Consensus 240 ~LenNPLqS 248 (722)
T KOG0532|consen 240 QLENNPLQS 248 (722)
T ss_pred eeccCCCCC
Confidence 666666654
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=117.95 Aligned_cols=107 Identities=26% Similarity=0.458 Sum_probs=76.7
Q ss_pred ccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEec
Q 040876 173 LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252 (343)
Q Consensus 173 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~ 252 (343)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.+|. .++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECc
Confidence 66777777777777777777778888888888888777777777778888888888888777777 67777777776555
Q ss_pred CceeeEeEEeccCCcccccCCCccccc--CCCeEeCcCCccc
Q 040876 253 ENNLTLKFLDLGENQIHGEMTNLTNAT--QLWYLRLHSNNFS 292 (343)
Q Consensus 253 ~n~l~l~~L~ls~n~l~~~~~~~~~~~--~L~~L~Ls~N~l~ 292 (343)
+ |+++|.+|..+... ++..+++.+|...
T Consensus 499 ~------------N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 G------------NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred C------------CcccccCChHHhhccccCceEEecCCccc
Confidence 4 44556666555432 5566777766543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.8e-11 Score=113.40 Aligned_cols=89 Identities=31% Similarity=0.402 Sum_probs=55.1
Q ss_pred chhhhhhcCCCC-CccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 160 DIFDIFSGCVSK-GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 160 ~ip~~l~~l~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
.+|...... + +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+.|+.|++++|+++ .+|.
T Consensus 130 ~i~~~~~~~--~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~- 203 (394)
T COG4886 130 DIPPLIGLL--KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP- 203 (394)
T ss_pred cCccccccc--hhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCch-
Confidence 455555544 4 6677777777766 45555666777777777777766 55555446666777777777766 6665
Q ss_pred hhhcCCCCCeEEecCc
Q 040876 239 HFVNLTKLSVFSVNEN 254 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n 254 (343)
.......|+.+.+++|
T Consensus 204 ~~~~~~~L~~l~~~~N 219 (394)
T COG4886 204 EIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhhcCC
Confidence 3334445666666655
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.3e-11 Score=107.34 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEecCCCCC
Q 040876 108 IPSWLYRLTHLEQLSVADRP 127 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~ 127 (343)
+|-.+.-+++|..+.+|.+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALS 225 (490)
T ss_pred cccchHHhhhhheeeeeccc
Confidence 66667778899999998887
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.4e-10 Score=109.47 Aligned_cols=170 Identities=31% Similarity=0.358 Sum_probs=120.6
Q ss_pred ccccCCCCCCEecCCCCC---------CCC-CCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEe
Q 040876 110 SWLYRLTHLEQLSVADRP---------SLA-SREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVL 178 (343)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~---------~l~-~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L 178 (343)
..+..++.++.|++.+|. .+. +|+.|++++| +. .+|..+..+ +.|+.|++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-----------------~l~~~~~~l--~~L~~L~l 170 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-----------------SLPSPLRNL--PNLKNLDL 170 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-----------------hhhhhhhcc--cccccccc
Confidence 345556778888888877 232 6788888877 65 677788888 99999999
Q ss_pred ecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeE
Q 040876 179 RSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTL 258 (343)
Q Consensus 179 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l 258 (343)
++|+++ .+|...+..+.|+.|++++|++. .+|..+.....|+++.+++|.+. .++. .+.++..+..+.+.+|++.
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~~n~~~- 245 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELSNNKLE- 245 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccCCceee-
Confidence 999999 67777778899999999999998 77776666777999999999644 4555 6777888888777776653
Q ss_pred eEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccc
Q 040876 259 KFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 259 ~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~ 315 (343)
.++...... .+++|++++|+++...+.. ..++++|++++|.+...
T Consensus 246 ------------~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 246 ------------DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------------eccchhccccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 112333333 5666666666666544322 45566666666665543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.7e-10 Score=93.30 Aligned_cols=121 Identities=31% Similarity=0.457 Sum_probs=43.7
Q ss_pred CCccEEEeecCccccccchhcc-CCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh-hcCCCCCe
Q 040876 171 KGLEILVLRSSSISGHLTEQIG-HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF-VNLTKLSV 248 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~-~~l~~L~~ 248 (343)
.++++|+|++|.|+. + +.++ .+.+|+.|++++|.++ .+ +.+..++.|++|++++|+++ .++. .+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--E
T ss_pred ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCE
Confidence 578999999999983 3 3465 5789999999999998 34 36788999999999999998 6765 34 46889999
Q ss_pred EEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccc------cCCCCcEEEc
Q 040876 249 FSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSL------ISSNLVYLDL 307 (343)
Q Consensus 249 L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~------~~~~L~~L~L 307 (343)
|++++|++. .+. .+-......+|+.|++.+|.++...-. .+++|+.||-
T Consensus 93 L~L~~N~I~---------~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKIS---------DLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS------------SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCC---------ChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888877764 111 121122223888888888888753211 1677777764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=8.9e-10 Score=91.08 Aligned_cols=127 Identities=23% Similarity=0.295 Sum_probs=48.3
Q ss_pred ccCCCCCCEEECcCCcccccCCcccc-CCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCccc
Q 040876 191 IGHFKNLDTLDLGNNSIVGLVPLSLN-ELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIH 269 (343)
Q Consensus 191 l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~ 269 (343)
+.+..++++|+|.+|.|+ .+ +.++ .+.+|+.|++++|.++ .++ .+..++.|+.|++++|.++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~------------ 77 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS------------ 77 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---------------
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC------------
Confidence 344567899999999998 33 4566 5789999999999998 665 4667888888877776654
Q ss_pred ccCCCcc-c-ccCCCeEeCcCCcccCccc---c-cCCCCcEEEccCCccccccCchhhccCCccccCceEecC
Q 040876 270 GEMTNLT-N-ATQLWYLRLHSNNFSGPLS---L-ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLG 336 (343)
Q Consensus 270 ~~~~~~~-~-~~~L~~L~Ls~N~l~~~~~---~-~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls 336 (343)
.++..+ . .++|++|++++|++...-- - .+++|+.|++.+|.++.. +..=...+..+|+|+.||-.
T Consensus 78 -~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 -SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred -ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 232222 2 3399999999999976321 1 289999999999999865 33323445678999998753
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.4e-10 Score=105.52 Aligned_cols=169 Identities=20% Similarity=0.210 Sum_probs=90.9
Q ss_pred CCccEEEeecCcccc--ccchhccCCCCCCEEECcCCcccccCCcc-ccCCCCCcEEEccCccCccccChHhhhcCCCCC
Q 040876 171 KGLEILVLRSSSISG--HLTEQIGHFKNLDTLDLGNNSIVGLVPLS-LNELSKLRILHLSDNKLNGTLSEIHFVNLTKLS 247 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~ 247 (343)
++++.|||+.|-+.. .+-....++++|+.|+++.|++.-..... -..+++|+.|.++.|.++..--......+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 555566666555542 11222345556666666666554221111 113455566666666555221111334455666
Q ss_pred eEEecCce-e-----------eEeEEeccCCcccccC--CCcccccCCCeEeCcCCcccCc-ccc--------cCCCCcE
Q 040876 248 VFSVNENN-L-----------TLKFLDLGENQIHGEM--TNLTNATQLWYLRLHSNNFSGP-LSL--------ISSNLVY 304 (343)
Q Consensus 248 ~L~l~~n~-l-----------~l~~L~ls~n~l~~~~--~~~~~~~~L~~L~Ls~N~l~~~-~~~--------~~~~L~~ 304 (343)
.|++..|. + +++.|||++|++.... +.......|..|+++.+.+... .|+ .+++|++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 66666652 1 1444666666665322 3333333777788888877642 121 1678999
Q ss_pred EEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 305 LDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 305 L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
|+++.|++...- . -..+..+++|+.|.+-.|+|+-
T Consensus 306 L~i~~N~I~~w~--s-l~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 306 LNISENNIRDWR--S-LNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred eecccCcccccc--c-cchhhccchhhhhhcccccccc
Confidence 999999986531 1 1334556777777777777754
No 34
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.89 E-value=2.2e-09 Score=67.29 Aligned_cols=39 Identities=51% Similarity=1.102 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhCC-CCCCCCCCCCCC--CCCccccceEeC
Q 040876 33 ESEREALLRFKQDLQ-DPSNRLASWNIG--GDCCTWAGIVCD 71 (343)
Q Consensus 33 ~~~~~~L~~~k~~~~-~~~~~~~~W~~~--~~~c~w~gv~c~ 71 (343)
++|++||++||+++. +|...+.+|+.. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 589999999999998 566889999865 799999999995
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=3.7e-10 Score=100.13 Aligned_cols=200 Identities=22% Similarity=0.174 Sum_probs=140.9
Q ss_pred CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCc---cccccchh-------ccCCCC
Q 040876 128 SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSS---ISGHLTEQ-------IGHFKN 196 (343)
Q Consensus 128 ~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~---l~~~~p~~-------l~~l~~ 196 (343)
.+.+++.+++++| |.-- -...+.+.+.+. +.|+..++++-. +...+|+. +...++
T Consensus 28 ~~~s~~~l~lsgnt~G~E------------Aa~~i~~~L~~~--~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTE------------AARAIAKVLASK--KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred ccCceEEEeccCCchhHH------------HHHHHHHHHhhc--ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 4556888999998 5310 002455667777 888888887632 22344443 445679
Q ss_pred CCEEECcCCcccccCCccc----cCCCCCcEEEccCccCccccChH-------------hhhcCCCCCeEEecCceee--
Q 040876 197 LDTLDLGNNSIVGLVPLSL----NELSKLRILHLSDNKLNGTLSEI-------------HFVNLTKLSVFSVNENNLT-- 257 (343)
Q Consensus 197 L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~l~~N~l~g~~p~~-------------~~~~l~~L~~L~l~~n~l~-- 257 (343)
|++|+||+|-|....++.+ .++..|++|.|.+|.+. ..... ....-+.|+++...+|++.
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 9999999999976655544 56789999999999885 22111 1234578999999999874
Q ss_pred --------------EeEEeccCCcccccC----CCccccc-CCCeEeCcCCcccCccc-------ccCCCCcEEEccCCc
Q 040876 258 --------------LKFLDLGENQIHGEM----TNLTNAT-QLWYLRLHSNNFSGPLS-------LISSNLVYLDLFNNS 311 (343)
Q Consensus 258 --------------l~~L~ls~n~l~~~~----~~~~~~~-~L~~L~Ls~N~l~~~~~-------~~~~~L~~L~Ls~N~ 311 (343)
++.+.++.|.|...- ...+..+ +|+.|||.+|-|+.... ..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 667888888875321 1223334 99999999999984221 126789999999999
Q ss_pred cccccCchhhccCC-ccccCceEecCCCcccc
Q 040876 312 FLGSISHFWCYRSN-ETKRLRALSLGDNYLQG 342 (343)
Q Consensus 312 l~~~~~~~l~~~l~-~l~~L~~L~ls~N~l~g 342 (343)
+.......+...+. ..++|+++.+.+|.|+-
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 98877666666553 47899999999998863
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.1e-10 Score=101.86 Aligned_cols=179 Identities=23% Similarity=0.204 Sum_probs=128.3
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccc--hhccCCCCCCEEECcCCcccccCC--ccccCCCCCcEEEccCccCcccc
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLT--EQIGHFKNLDTLDLGNNSIVGLVP--LSLNELSKLRILHLSDNKLNGTL 235 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~g~~ 235 (343)
.+...=.++ ++|+.+.|.++.+. ..+ .....+++++.|||+.|-+....| .....+++|+.|+++.|++.-..
T Consensus 112 ki~akQsn~--kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 112 KIAAKQSNL--KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHHhhhH--HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 455555667 89999999998877 334 367789999999999998874322 34567999999999999986333
Q ss_pred ChHhhhcCCCCCeEEecCceee-------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcc--ccc-
Q 040876 236 SEIHFVNLTKLSVFSVNENNLT-------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPL--SLI- 298 (343)
Q Consensus 236 p~~~~~~l~~L~~L~l~~n~l~-------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~--~~~- 298 (343)
....-..+++|+.|.++.|.++ ++.|++..|.....-....... .|+.|||++|++-... +..
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 2222235789999999999986 5569999996332222233334 8999999999987533 222
Q ss_pred -CCCCcEEEccCCcccccc-C-chhhccCCccccCceEecCCCccc
Q 040876 299 -SSNLVYLDLFNNSFLGSI-S-HFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 299 -~~~L~~L~Ls~N~l~~~~-~-~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
++.|+.|+++.+.+.... | ...-+....+++|++|++..|++.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 888999999999887531 1 001111356889999999999984
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.2e-09 Score=72.23 Aligned_cols=60 Identities=35% Similarity=0.561 Sum_probs=38.2
Q ss_pred CccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccC
Q 040876 172 GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKL 231 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 231 (343)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566667777666644445566666666666666666655555666666666666666653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=6.1e-10 Score=97.01 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=43.2
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
+.|+++||++|.|+ .+.+++.-++.++.|++|+|.+. .+ ..++.+++|+.||+++|.++ .+.. .-..+.+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhh-hHhhhcCEeeee
Confidence 45566666666665 45555555566666666666665 22 23555666666666666654 3322 223344445555
Q ss_pred ecCcee
Q 040876 251 VNENNL 256 (343)
Q Consensus 251 l~~n~l 256 (343)
+++|.+
T Consensus 359 La~N~i 364 (490)
T KOG1259|consen 359 LAQNKI 364 (490)
T ss_pred hhhhhH
Confidence 544433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=6.2e-09 Score=70.80 Aligned_cols=61 Identities=38% Similarity=0.604 Sum_probs=51.6
Q ss_pred CCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCcee
Q 040876 195 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l 256 (343)
++|++|++++|+++..-+..+..+++|++|++++|.++ .+++..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999665568889999999999999998 66655889999999999988764
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-09 Score=100.58 Aligned_cols=141 Identities=26% Similarity=0.305 Sum_probs=86.3
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh-hhcC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH-FVNL 243 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~-~~~l 243 (343)
+..+ ++|++|++++|.|+...+ +..++.|+.|++++|.++.. ..+..++.|+.+++++|++. .+.. . ...+
T Consensus 114 l~~~--~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~-~~~~~~ 185 (414)
T KOG0531|consen 114 LSSL--VNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIEN-DELSEL 185 (414)
T ss_pred hhhh--hcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhh-hhhhhc
Confidence 5556 778888888888774333 55666688888888887622 34556777888888888876 4443 1 3567
Q ss_pred CCCCeEEecCceee----------EeEEeccCCcccccCCCccccc--CCCeEeCcCCcccCc--ccccCCCCcEEEccC
Q 040876 244 TKLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNAT--QLWYLRLHSNNFSGP--LSLISSNLVYLDLFN 309 (343)
Q Consensus 244 ~~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~--~L~~L~Ls~N~l~~~--~~~~~~~L~~L~Ls~ 309 (343)
.+++.+.+.+|.+. +..+++..|.++-.-+ ..... .|+.+++++|.+... ....+..+..|++.+
T Consensus 186 ~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 186 ISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred cchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhh
Confidence 77777777777664 2224556666553211 11111 267777777777653 222355666666666
Q ss_pred Ccccc
Q 040876 310 NSFLG 314 (343)
Q Consensus 310 N~l~~ 314 (343)
|++..
T Consensus 265 n~~~~ 269 (414)
T KOG0531|consen 265 NRISN 269 (414)
T ss_pred ccccc
Confidence 66654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.63 E-value=4.2e-10 Score=108.16 Aligned_cols=167 Identities=24% Similarity=0.318 Sum_probs=86.6
Q ss_pred CccccCCCCCCEecCCCCC--------CC-CCCcccccchh---hcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 109 PSWLYRLTHLEQLSVADRP--------SL-ASREDQDLLSN---IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 109 p~~l~~l~~L~~L~Ls~n~--------~l-~~L~~L~l~~n---l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
|-.|..+..|++|.|.++. .+ ..|+.|..++. +...+..|. |++..++.. ..|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascg---------gd~~ns~~W---n~L~~a 169 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCG---------GDISNSPVW---NKLATA 169 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhc---------cccccchhh---hhHhhh
Confidence 5568899999999999988 11 12444444443 221122221 233333322 245556
Q ss_pred EeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCcee
Q 040876 177 VLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l 256 (343)
+.++|.+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++||+++|.+. .+|......+ +|+.|.+.+|.+
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHH
Confidence 66666665 4555555566666666666666532 25566666666666666665 5554222222 255555555544
Q ss_pred e----------EeEEeccCCccccc--CCCcccccCCCeEeCcCCccc
Q 040876 257 T----------LKFLDLGENQIHGE--MTNLTNATQLWYLRLHSNNFS 292 (343)
Q Consensus 257 ~----------l~~L~ls~n~l~~~--~~~~~~~~~L~~L~Ls~N~l~ 292 (343)
+ +.-||+++|-|.+. +........|+.|+|.+|.+.
T Consensus 245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3 23344445544431 111222225566666666554
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.60 E-value=3e-08 Score=85.44 Aligned_cols=224 Identities=18% Similarity=0.161 Sum_probs=134.0
Q ss_pred ccccCCCCCCEecCCCCC--------------CCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccE
Q 040876 110 SWLYRLTHLEQLSVADRP--------------SLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEI 175 (343)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~--------------~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~ 175 (343)
..+..+..++.+|||+|. .-.+|+..+++.-++|....- +...+.-+-+.+.+| ++|+.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde-----~~~~L~~Ll~aLlkc--p~l~~ 96 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDE-----LYSNLVMLLKALLKC--PRLQK 96 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHH-----HHHHHHHHHHHHhcC--Cccee
Confidence 445568889999999997 334466666665554432110 000012334466788 99999
Q ss_pred EEeecCccccccchh----ccCCCCCCEEECcCCccccc----CCcc---------ccCCCCCcEEEccCccCccccCh-
Q 040876 176 LVLRSSSISGHLTEQ----IGHFKNLDTLDLGNNSIVGL----VPLS---------LNELSKLRILHLSDNKLNGTLSE- 237 (343)
Q Consensus 176 L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~----~p~~---------l~~l~~L~~L~l~~N~l~g~~p~- 237 (343)
.+||+|.+....|+. +++.+.|++|.+++|.+... +... ..+-|.|+++....|++. ..|.
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~ 175 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKE 175 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHH
Confidence 999999998766654 56778999999999987521 1111 234578999999999885 3332
Q ss_pred ---HhhhcCCCCCeEEecCceee-----------------EeEEeccCCcccccCC----Cccccc-CCCeEeCcCCccc
Q 040876 238 ---IHFVNLTKLSVFSVNENNLT-----------------LKFLDLGENQIHGEMT----NLTNAT-QLWYLRLHSNNFS 292 (343)
Q Consensus 238 ---~~~~~l~~L~~L~l~~n~l~-----------------l~~L~ls~n~l~~~~~----~~~~~~-~L~~L~Ls~N~l~ 292 (343)
..+..-..|+.+.+.+|.|. +++||+..|.++-.-. ...... .|+.|.+.+|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 13334467888999888774 5567777776653111 111111 4566677666665
Q ss_pred Cccccc---------CCCCcEEEccCCccccccCch--hhccC-CccccCceEecCCCccc
Q 040876 293 GPLSLI---------SSNLVYLDLFNNSFLGSISHF--WCYRS-NETKRLRALSLGDNYLQ 341 (343)
Q Consensus 293 ~~~~~~---------~~~L~~L~Ls~N~l~~~~~~~--l~~~l-~~l~~L~~L~ls~N~l~ 341 (343)
...... .++|..|...+|...+.+-.. ++... .++|-|..|.+.+|+|.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 322211 456666666666665533211 11111 34556666666666654
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.3e-08 Score=96.80 Aligned_cols=165 Identities=29% Similarity=0.293 Sum_probs=107.9
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
..+..+ ++|+.|++.+|+|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++ .+. .+..
T Consensus 89 ~~l~~~--~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~--~~~~ 160 (414)
T KOG0531|consen 89 NHLSKL--KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DIS--GLES 160 (414)
T ss_pred cccccc--cceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hcc--CCcc
Confidence 345666 889999999999984 444477899999999999999855 35778888999999999997 554 3555
Q ss_pred CCCCCeEEecCceee---E---------eEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCC--CcEEE
Q 040876 243 LTKLSVFSVNENNLT---L---------KFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSN--LVYLD 306 (343)
Q Consensus 243 l~~L~~L~l~~n~l~---l---------~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~--L~~L~ 306 (343)
+..|+.+++++|.++ . +.+++.+|.+... ...... .+..+++..|.++..-+.. ... |+.++
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~ 238 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELY 238 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHh
Confidence 778888888777654 1 1133333333211 111111 3334455555554332222 222 77888
Q ss_pred ccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 307 LFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 307 Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+++|.+... +..+..+..+..+++..|+++.
T Consensus 239 l~~n~i~~~-----~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 239 LSGNRISRS-----PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cccCccccc-----cccccccccccccchhhccccc
Confidence 888887642 1345677888899999888764
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=1.4e-07 Score=81.46 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=135.1
Q ss_pred CCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccc---cccc-------hhccCCCCC
Q 040876 129 LASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSIS---GHLT-------EQIGHFKNL 197 (343)
Q Consensus 129 l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~---~~~p-------~~l~~l~~L 197 (343)
+..+..++||+| |...- ...+...+.+- .+|+..++++-... ..+| +.+.++++|
T Consensus 29 ~d~~~evdLSGNtigtEA------------~e~l~~~ia~~--~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l 94 (388)
T COG5238 29 MDELVEVDLSGNTIGTEA------------MEELCNVIANV--RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRL 94 (388)
T ss_pred hcceeEEeccCCcccHHH------------HHHHHHHHhhh--cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcc
Confidence 445788889988 54100 02344555666 78888888764322 2233 345678999
Q ss_pred CEEECcCCcccccCCccc----cCCCCCcEEEccCccCccccChHhh-------------hcCCCCCeEEecCceee---
Q 040876 198 DTLDLGNNSIVGLVPLSL----NELSKLRILHLSDNKLNGTLSEIHF-------------VNLTKLSVFSVNENNLT--- 257 (343)
Q Consensus 198 ~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~l~~N~l~g~~p~~~~-------------~~l~~L~~L~l~~n~l~--- 257 (343)
+..+||+|.|....|+.+ ++.+.|.+|.+++|.+. .+.-..+ .+-+.|+.+....|++.
T Consensus 95 ~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 95 QKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred eeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 999999999988877654 56789999999999874 3332112 34578999999999874
Q ss_pred -------------EeEEeccCCcccccC------CCcccccCCCeEeCcCCcccCcccc-------cCCCCcEEEccCCc
Q 040876 258 -------------LKFLDLGENQIHGEM------TNLTNATQLWYLRLHSNNFSGPLSL-------ISSNLVYLDLFNNS 311 (343)
Q Consensus 258 -------------l~~L~ls~n~l~~~~------~~~~~~~~L~~L~Ls~N~l~~~~~~-------~~~~L~~L~Ls~N~ 311 (343)
++.+.+..|.|...- -..+...+|+.|||.+|-|+-.... .++.|+.|.+.+|.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 566778888775321 1122223899999999998842221 15678999999999
Q ss_pred cccccCchhhccCC--ccccCceEecCCCcccc
Q 040876 312 FLGSISHFWCYRSN--ETKRLRALSLGDNYLQG 342 (343)
Q Consensus 312 l~~~~~~~l~~~l~--~l~~L~~L~ls~N~l~g 342 (343)
++......+-..+. ..++|..|...||...|
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 88776655444443 45788888888887665
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=1.4e-08 Score=97.97 Aligned_cols=155 Identities=25% Similarity=0.248 Sum_probs=87.9
Q ss_pred hhhhhcCCCCCccEEEeecCccccccchhccCC---------------------------------CCCCEEECcCCccc
Q 040876 162 FDIFSGCVSKGLEILVLRSSSISGHLTEQIGHF---------------------------------KNLDTLDLGNNSIV 208 (343)
Q Consensus 162 p~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l---------------------------------~~L~~L~Ls~N~l~ 208 (343)
|-.|..+ .+|++|.+.++.+... ..+..+ ..|...+.++|.+.
T Consensus 102 pi~ifpF--~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPF--RSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred Cceeccc--cceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 4456666 8899999998887621 111111 12344444555554
Q ss_pred ccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcccc-cCCCeEeCc
Q 040876 209 GLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNA-TQLWYLRLH 287 (343)
Q Consensus 209 ~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~-~~L~~L~Ls 287 (343)
.+..++.-++.++.|+|+.|+++ .+. .+..+++|++||++.|. ++ .+|..... +.|+.|.++
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~------------L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNC------------LR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccch------------hc-cccccchhhhhheeeeec
Confidence 33444555556666666666665 222 34455566665555544 43 33322211 267788888
Q ss_pred CCcccCccccc-CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 288 SNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 288 ~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+|.++...... +++|+.||+++|-+.+-- + + ..+..+..|+.|.|.+|++
T Consensus 241 nN~l~tL~gie~LksL~~LDlsyNll~~hs-e-L-~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTLRGIENLKSLYGLDLSYNLLSEHS-E-L-EPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhhhhHHhhhhhhccchhHhhhhcch-h-h-hHHHHHHHHHHHhhcCCcc
Confidence 88777543332 677788888888776531 1 1 2345667777888888775
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.2e-07 Score=82.78 Aligned_cols=86 Identities=26% Similarity=0.304 Sum_probs=65.2
Q ss_pred CCccEEEeecCcccc--ccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCe
Q 040876 171 KGLEILVLRSSSISG--HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSV 248 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~ 248 (343)
+.++.+||.+|.|+. .+...+.+++.|++|+++.|.+...|-..-....+|++|.|.+..+...-....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 788999999999983 444556789999999999999875443221456789999999988865544446677888888
Q ss_pred EEecCcee
Q 040876 249 FSVNENNL 256 (343)
Q Consensus 249 L~l~~n~l 256 (343)
|+++.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 88888854
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=5.2e-07 Score=92.40 Aligned_cols=69 Identities=30% Similarity=0.372 Sum_probs=55.8
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCcc
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNK 230 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 230 (343)
+.+|+.++++ -+|++|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+..-.
T Consensus 585 ~~LP~~I~~L--i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 585 SKLPSSIGEL--VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred CcCChHHhhh--hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 5788888888 88888888888888 788888888888898888877665666666668888888876554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-08 Score=85.58 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=112.4
Q ss_pred CCccEEEeecCcccc-ccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCcc-CccccChHhhhcCCCCCe
Q 040876 171 KGLEILVLRSSSISG-HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNK-LNGTLSEIHFVNLTKLSV 248 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~-l~g~~p~~~~~~l~~L~~ 248 (343)
+.||+|||++..|+. .+-..+..+.+|+.|.+.++.+...+...+++-..|+.|+++.+. ++..-....+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 468999999988873 333446778899999999999998888888999999999998763 442222225678899999
Q ss_pred EEecCceee--------------EeEEeccCCc--c-cccCCCccccc-CCCeEeCcCCcccCc--cccc--CCCCcEEE
Q 040876 249 FSVNENNLT--------------LKFLDLGENQ--I-HGEMTNLTNAT-QLWYLRLHSNNFSGP--LSLI--SSNLVYLD 306 (343)
Q Consensus 249 L~l~~n~l~--------------l~~L~ls~n~--l-~~~~~~~~~~~-~L~~L~Ls~N~l~~~--~~~~--~~~L~~L~ 306 (343)
|+++.+.++ ++.|++++.. + ...+......+ +|..|||++|..-.. +... ++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999988764 3346665542 1 11222222233 889999998765432 1111 67889999
Q ss_pred ccCCccccccCchhhccCCccccCceEecCCC
Q 040876 307 LFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 307 Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
++.|. +.+|..+ -.+...|.|.+||+-+.
T Consensus 345 lsRCY--~i~p~~~-~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCY--DIIPETL-LELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhc--CCChHHe-eeeccCcceEEEEeccc
Confidence 98887 3444333 34577888888887653
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.4e-06 Score=52.93 Aligned_cols=36 Identities=39% Similarity=0.591 Sum_probs=17.7
Q ss_pred CccEEEeecCccccccchhccCCCCCCEEECcCCccc
Q 040876 172 GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIV 208 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 208 (343)
+|++|++++|+|+ .+|+.++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.8e-06 Score=52.22 Aligned_cols=41 Identities=44% Similarity=0.664 Sum_probs=34.5
Q ss_pred CCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh
Q 040876 195 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~ 237 (343)
++|++|++++|+|+ .+|..++++++|++|++++|+++ .++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEGG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCcC
Confidence 57999999999999 67877999999999999999998 5553
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=4.2e-05 Score=71.23 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=81.9
Q ss_pred hhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCc-cCccccChHhh
Q 040876 162 FDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDN-KLNGTLSEIHF 240 (343)
Q Consensus 162 p~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N-~l~g~~p~~~~ 240 (343)
-..+..+ .+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|+.|++++| .+. .+|.
T Consensus 45 ~~r~~~~--~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~--- 112 (426)
T PRK15386 45 TPQIEEA--RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE--- 112 (426)
T ss_pred HHHHHHh--cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc---
Confidence 3345667 88999999999888 5662 2 2469999998754333666554 358999999988 554 5664
Q ss_pred hcCCCCCeEEecCceee--------EeEEeccCCc-cc-ccCCCccccc-CCCeEeCcCCcccCcccccCCCCcEEEccC
Q 040876 241 VNLTKLSVFSVNENNLT--------LKFLDLGENQ-IH-GEMTNLTNAT-QLWYLRLHSNNFSGPLSLISSNLVYLDLFN 309 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~--------l~~L~ls~n~-l~-~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~ 309 (343)
.|+.|++..+... ++.|.+.+++ .. ..+|. ..+ +|++|++++|.....++....+|+.|+++.
T Consensus 113 ----sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 113 ----SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred ----ccceEEeCCCCCcccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 3566666655431 3445553322 11 01111 123 788888888876643333456788888877
Q ss_pred Cc
Q 040876 310 NS 311 (343)
Q Consensus 310 N~ 311 (343)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=8.7e-07 Score=68.97 Aligned_cols=89 Identities=28% Similarity=0.334 Sum_probs=66.3
Q ss_pred hhhhhcCCCCCccEEEeecCccccccchhc-cCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh
Q 040876 162 FDIFSGCVSKGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF 240 (343)
Q Consensus 162 p~~l~~l~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~ 240 (343)
+..+... ..|+..+|++|.+. ..|+.| ...+.+++|++++|.++ .+|..++.++.|+.++++.|.+. ..|. .+
T Consensus 46 vy~l~~~--~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~-vi 119 (177)
T KOG4579|consen 46 VYMLSKG--YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPR-VI 119 (177)
T ss_pred HHHHhCC--ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchH-HH
Confidence 3344445 66777889999988 455555 44568889999999988 78888999999999999999987 6676 55
Q ss_pred hcCCCCCeEEecCcee
Q 040876 241 VNLTKLSVFSVNENNL 256 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l 256 (343)
..+.++..|+..+|.+
T Consensus 120 ~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 120 APLIKLDMLDSPENAR 135 (177)
T ss_pred HHHHhHHHhcCCCCcc
Confidence 5577777777666543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=4.5e-06 Score=73.13 Aligned_cols=191 Identities=21% Similarity=0.179 Sum_probs=103.3
Q ss_pred CCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccc
Q 040876 130 ASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIV 208 (343)
Q Consensus 130 ~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 208 (343)
..++.+||.+| ++. +.+|..-+.++ +.|++|+++.|.+...+...-....+|+.|-|.+..+.
T Consensus 71 ~~v~elDL~~N~iSd--------------WseI~~ile~l--P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 71 TDVKELDLTGNLISD--------------WSEIGAILEQL--PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhcccchhcc--------------HHHHHHHHhcC--ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 34666677666 552 24566667788 99999999999988544332245678999999888776
Q ss_pred ccCC-ccccCCCCCcEEEccCccCccc-cChHhhhc-CCCCCeEEecCceee--------------EeEEeccCCccccc
Q 040876 209 GLVP-LSLNELSKLRILHLSDNKLNGT-LSEIHFVN-LTKLSVFSVNENNLT--------------LKFLDLGENQIHGE 271 (343)
Q Consensus 209 ~~~p-~~l~~l~~L~~L~l~~N~l~g~-~p~~~~~~-l~~L~~L~l~~n~l~--------------l~~L~ls~n~l~~~ 271 (343)
.... ..+..+|.++.|.++.|.+.-. +.+..... -+.+++++.-.|... ...+.+..|.+...
T Consensus 135 w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 135 WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccch
Confidence 4433 3456788888888888854310 11101111 123344444333221 12233334433321
Q ss_pred CCC-cccc-cCCCeEeCcCCcccCc--ccc--cCCCCcEEEccCCccccccCchhhc--cCCccccCceEecC
Q 040876 272 MTN-LTNA-TQLWYLRLHSNNFSGP--LSL--ISSNLVYLDLFNNSFLGSISHFWCY--RSNETKRLRALSLG 336 (343)
Q Consensus 272 ~~~-~~~~-~~L~~L~Ls~N~l~~~--~~~--~~~~L~~L~Ls~N~l~~~~~~~l~~--~l~~l~~L~~L~ls 336 (343)
-.. .... +.+-.|+|+.|++..- +.. .++.|+.|.+++|.+.+.....-+. -++++++++.|+=+
T Consensus 215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 110 0111 1344667777776541 111 1677777788887776544321111 23566777766543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=1.3e-06 Score=67.93 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=90.6
Q ss_pred CCccEEEeecCccccccchh---ccCCCCCCEEECcCCcccccCCcccc-CCCCCcEEEccCccCccccChHhhhcCCCC
Q 040876 171 KGLEILVLRSSSISGHLTEQ---IGHFKNLDTLDLGNNSIVGLVPLSLN-ELSKLRILHLSDNKLNGTLSEIHFVNLTKL 246 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L 246 (343)
..+..++|++|++. .++.. +.+...|+..+|++|.+. .+|+.|. ..+.+++|++++|.++ .+|. .+..++.|
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPAL 102 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHh
Confidence 45667888988876 45544 445567777899999998 6676665 4568999999999998 8999 69999999
Q ss_pred CeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CC-CCcEEEccCCccccccC
Q 040876 247 SVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SS-NLVYLDLFNNSFLGSIS 317 (343)
Q Consensus 247 ~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~-~L~~L~Ls~N~l~~~~~ 317 (343)
+.|+++.|.+. ..|..+... ++..|+..+|.+....-+. .+ ..-..++.++.+.+..+
T Consensus 103 r~lNl~~N~l~-------------~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 103 RSLNLRFNPLN-------------AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hhcccccCccc-------------cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 99888876653 334444445 8888888888776533222 22 22233456666766544
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.7e-06 Score=75.69 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=99.7
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCc-ccccC-CccccCCCCCcEEEccCccCccccCh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNS-IVGLV-PLSLNELSKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~-p~~l~~l~~L~~L~l~~N~l~g~~p~ 237 (343)
.+-..+..| .+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.-- .--+.+++.|..|+++.+.+..+...
T Consensus 201 tl~~iLs~C--~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 201 TLHGILSQC--SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHH--HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 455567778 889999999999998888888888999999998764 33111 11246788899999998877644332
Q ss_pred Hhhhc-CCCCCeEEecCceee---------------EeEEeccCCc-ccc-cCCCcccccCCCeEeCcCCcccCccccc-
Q 040876 238 IHFVN-LTKLSVFSVNENNLT---------------LKFLDLGENQ-IHG-EMTNLTNATQLWYLRLHSNNFSGPLSLI- 298 (343)
Q Consensus 238 ~~~~~-l~~L~~L~l~~n~l~---------------l~~L~ls~n~-l~~-~~~~~~~~~~L~~L~Ls~N~l~~~~~~~- 298 (343)
..+.+ -++|+.|++++..-. +..|||+.|. ++. .+...++...|++|.++.|..- +|..
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETL 356 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHe
Confidence 22222 256777777775321 4557887663 443 2233344448999999998653 3332
Q ss_pred -----CCCCcEEEccCCc
Q 040876 299 -----SSNLVYLDLFNNS 311 (343)
Q Consensus 299 -----~~~L~~L~Ls~N~ 311 (343)
.+.|.||++.++-
T Consensus 357 ~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccCcceEEEEecccc
Confidence 6789999987665
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.78 E-value=1.9e-05 Score=81.12 Aligned_cols=89 Identities=26% Similarity=0.361 Sum_probs=77.2
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
+.|..+ +.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|.+++++++|.+|++..+.....+|. ....
T Consensus 565 ~ff~~m--~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~ 640 (889)
T KOG4658|consen 565 EFFRSL--PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLE 640 (889)
T ss_pred HHHhhC--cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhh
Confidence 346668 99999999998877899999999999999999999999 8999999999999999998876545554 6667
Q ss_pred CCCCCeEEecCce
Q 040876 243 LTKLSVFSVNENN 255 (343)
Q Consensus 243 l~~L~~L~l~~n~ 255 (343)
+++|++|.+....
T Consensus 641 L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 641 LQSLRVLRLPRSA 653 (889)
T ss_pred cccccEEEeeccc
Confidence 9999999987654
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=3.1e-05 Score=77.63 Aligned_cols=128 Identities=17% Similarity=0.297 Sum_probs=79.6
Q ss_pred cchhhhhhcCCCCCccEEEeecCcccc-ccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISG-HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~ 237 (343)
...|..++.++ |.|+.|.+.+-.+.. ..-....++++|..||+|+.+++.. .+++++++|++|.+.+=.+...---
T Consensus 137 ~~W~~kig~~L-PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 137 NGWPKKIGTML-PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred ccHHHHHhhhC-cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhH
Confidence 36677776654 888888888766542 2233345778889999999888744 6788888888888877666521111
Q ss_pred HhhhcCCCCCeEEecCceeeEeEEeccCCccccc-CCCcccccCCCeEeCcCCcccCcc
Q 040876 238 IHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGE-MTNLTNATQLWYLRLHSNNFSGPL 295 (343)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~-~~~~~~~~~L~~L~Ls~N~l~~~~ 295 (343)
..+.++++|+.||+|.....-. .++... +..-...+.|+.||.|+..+.+.+
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~------~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDD------TKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhcccCCCeeeccccccccc------hHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 1455788888888887543210 011110 000111227888888888777533
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=7.9e-05 Score=74.73 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=66.2
Q ss_pred hhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccc-cCCccccCCCCCcEEEccCccCccc--cCh
Q 040876 161 IFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVG-LVPLSLNELSKLRILHLSDNKLNGT--LSE 237 (343)
Q Consensus 161 ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~N~l~g~--~p~ 237 (343)
+-....++ ++|..||+|+++++.. ..++++++|+.|.+.+=.+.. ..-..+.++++|++||+|....... +..
T Consensus 165 F~~lc~sF--pNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~ 240 (699)
T KOG3665|consen 165 FSQLCASF--PNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIE 240 (699)
T ss_pred HHHHhhcc--CccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHH
Confidence 33444566 9999999999999843 668999999999998876652 2224678899999999998765421 111
Q ss_pred H---hhhcCCCCCeEEecCceee
Q 040876 238 I---HFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 238 ~---~~~~l~~L~~L~l~~n~l~ 257 (343)
. .-..+|.|+.||.+++.+.
T Consensus 241 qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHhcccCccccEEecCCcchh
Confidence 0 1134788888888876654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.0002 Score=59.63 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCcee
Q 040876 195 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l 256 (343)
.+...+||++|.+... ..|..++.|.+|.+++|+|+ .|.+..-.-++.|..|.+.+|.+
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcch
Confidence 4556677777766522 24556667777777777776 33331222345555555555443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00048 Score=57.38 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=62.2
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh-HhhhcCCCCCeE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE-IHFVNLTKLSVF 249 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~l~~L~~L 249 (343)
.....+||++|.+. .+ ..+..++.|.+|.+++|.|+..-|.--..+++|+.|.+.+|.+. .+.+ ..+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 46678899999887 23 34778899999999999999555543345678999999999886 3221 135678899999
Q ss_pred EecCceee
Q 040876 250 SVNENNLT 257 (343)
Q Consensus 250 ~l~~n~l~ 257 (343)
.+-+|.++
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 88887764
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.16 E-value=0.0018 Score=60.47 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=82.9
Q ss_pred ccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCc-eee-----EeEEecc
Q 040876 191 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNEN-NLT-----LKFLDLG 264 (343)
Q Consensus 191 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n-~l~-----l~~L~ls 264 (343)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.--..+|. .+ .++|+.|++++| .+. ++.|++.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccccccceEEeC
Confidence 445688999999999888 6672 234799999988543236675 33 358899999988 442 5667777
Q ss_pred CCcccccCCCccccc-CCCeEeCcCCccc--Cccccc-CCCCcEEEccCCccccccCchhhccCCccccCceEecCCC
Q 040876 265 ENQIHGEMTNLTNAT-QLWYLRLHSNNFS--GPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 265 ~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~--~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
.+.... + ...+ +|+.|.+.+++.. ..+|.. .++|++|++++|.... .|+.+| .+|+.|+++.|
T Consensus 121 ~n~~~~-L---~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP------~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDS-I---KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP------ESLQSITLHIE 187 (426)
T ss_pred CCCCcc-c---ccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc------ccCcEEEeccc
Confidence 655432 1 1222 6778877543311 122322 4789999999988652 444444 35677776655
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0011 Score=57.39 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=36.2
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCC--cccccCCccccCCCCCcEEEccCccCc
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNN--SIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
..|+.|.+.+..++.. ..+..+++|+.|.++.| ++.+.++.....+++|+++++++|++.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4555555555555521 22445667777777777 555555554555677777777777764
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0022 Score=55.55 Aligned_cols=60 Identities=30% Similarity=0.362 Sum_probs=33.8
Q ss_pred CCccEEEeecC--ccccccchhccCCCCCCEEECcCCcccccCCcc---ccCCCCCcEEEccCccCc
Q 040876 171 KGLEILVLRSS--SISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS---LNELSKLRILHLSDNKLN 232 (343)
Q Consensus 171 ~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l~~N~l~ 232 (343)
++|++|.++.| ++.+.++.-...+++|++|++++|++.. ++. +..+.+|..|++.+|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 56666666666 4554444444445666666776666641 222 234455666666666544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00028 Score=61.58 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCc
Q 040876 197 LDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNEN 254 (343)
Q Consensus 197 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n 254 (343)
.+.|+.-++.++.. ....+|+.|++|.|+-|+|+ .+. .+..+++|+.|.|..|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKN 73 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhc
Confidence 34444444444422 12334555555555555554 332 2344444444444443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.74 E-value=0.0038 Score=32.60 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.5
Q ss_pred cEEEeecCccc
Q 040876 174 EILVLRSSSIS 184 (343)
Q Consensus 174 ~~L~L~~n~l~ 184 (343)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.72 E-value=6.6e-05 Score=72.09 Aligned_cols=172 Identities=22% Similarity=0.161 Sum_probs=91.2
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccch----hccCC-CCCCEEECcCCccccc----CCccccCCCCCcEEEccCcc
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTE----QIGHF-KNLDTLDLGNNSIVGL----VPLSLNELSKLRILHLSDNK 230 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~----~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~ 230 (343)
.+-..+... ..|+.|++++|.+.+.--. .+... ..+++|++..|.++.. +.+.+.....++.++++.|.
T Consensus 106 ~l~~~l~t~--~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 106 ELAQALKTL--PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHHhccc--ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 344445555 6666666666666532211 12222 3455566666655432 23344445566666666666
Q ss_pred Cc--cc--cChHhhh----cCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc--CCCeEeCcCCcccCcccc---
Q 040876 231 LN--GT--LSEIHFV----NLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT--QLWYLRLHSNNFSGPLSL--- 297 (343)
Q Consensus 231 l~--g~--~p~~~~~----~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~--~L~~L~Ls~N~l~~~~~~--- 297 (343)
+. |. ++. .+. ...++++|++.+|.++-. .-. .+...+... .+..+++..|.+.+....
T Consensus 184 l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~----~c~----~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~ 254 (478)
T KOG4308|consen 184 LIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSS----SCA----LLDEVLASGESLLRELDLASNKLGDVGVEKLL 254 (478)
T ss_pred cchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChH----HHH----HHHHHHhccchhhHHHHHHhcCcchHHHHHHH
Confidence 53 10 111 222 234455555554443200 000 001111112 256678888877643111
Q ss_pred -c---C-CCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 298 -I---S-SNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 298 -~---~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
. + ..++.++++.|.|+......++..+..+++++.+.+++|.+..
T Consensus 255 ~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 255 PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 2 4567888888888887777777777778888888888887754
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0072 Score=31.53 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=18.1
Q ss_pred CCCEEECcCCcccccCCccccCC
Q 040876 196 NLDTLDLGNNSIVGLVPLSLNEL 218 (343)
Q Consensus 196 ~L~~L~Ls~N~l~~~~p~~l~~l 218 (343)
+|++||+++|+++ .+|.+++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999999 888877653
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.39 E-value=0.047 Score=42.39 Aligned_cols=82 Identities=15% Similarity=0.355 Sum_probs=36.6
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
+.++ ++|+.+.+..+ +...-...+.+++.++.+.+.+ .+...-...+..+++++.+.+..+ +. .++...|.+.
T Consensus 31 F~~~--~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~- 103 (129)
T PF13306_consen 31 FSNC--TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC- 103 (129)
T ss_dssp TTT---TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--
T ss_pred cccc--ccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-
Confidence 4445 56666666553 4433333455565667776654 332222334555666777766554 33 4444355554
Q ss_pred CCCeEEecC
Q 040876 245 KLSVFSVNE 253 (343)
Q Consensus 245 ~L~~L~l~~ 253 (343)
.++.+.+..
T Consensus 104 ~l~~i~~~~ 112 (129)
T PF13306_consen 104 NLKEINIPS 112 (129)
T ss_dssp T--EEE-TT
T ss_pred CceEEEECC
Confidence 666665543
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.49 E-value=0.00029 Score=67.73 Aligned_cols=135 Identities=22% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCccEEEeecCcccc----ccchhccCCCCCCEEECcCCcccc----cCCcccc----CCCCCcEEEccCccCccccC--
Q 040876 171 KGLEILVLRSSSISG----HLTEQIGHFKNLDTLDLGNNSIVG----LVPLSLN----ELSKLRILHLSDNKLNGTLS-- 236 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~----~l~~L~~L~l~~N~l~g~~p-- 236 (343)
..+++|++..|.+++ .+...+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++...-
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 457778888888874 455667778899999999998841 1233333 46789999999998862110
Q ss_pred -hHhhhcCCC-CCeEEecCceeeEeEEeccCCccccc-----CCCcccc-cCCCeEeCcCCcccCccccc-------CCC
Q 040876 237 -EIHFVNLTK-LSVFSVNENNLTLKFLDLGENQIHGE-----MTNLTNA-TQLWYLRLHSNNFSGPLSLI-------SSN 301 (343)
Q Consensus 237 -~~~~~~l~~-L~~L~l~~n~l~l~~L~ls~n~l~~~-----~~~~~~~-~~L~~L~Ls~N~l~~~~~~~-------~~~ 301 (343)
...+...+. +..|++..|. +.+. .|..... ..++.++++.|.++..-... ++.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~------------l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~ 291 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNK------------LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQ 291 (478)
T ss_pred HHHHHhccchhhHHHHHHhcC------------cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHH
Confidence 112233333 4445555544 4321 1211222 16778888888887533322 457
Q ss_pred CcEEEccCCccccccC
Q 040876 302 LVYLDLFNNSFLGSIS 317 (343)
Q Consensus 302 L~~L~Ls~N~l~~~~~ 317 (343)
++++.++.|.+.+...
T Consensus 292 l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 292 LEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHhhcccCccccHHH
Confidence 7888888888766543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.0038 Score=54.70 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=34.8
Q ss_pred CccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh-HhhhcCCCCCeEE
Q 040876 172 GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE-IHFVNLTKLSVFS 250 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~l~~L~~L~ 250 (343)
+.+.|++-++.++. + ....+|+.|+.|.||-|+|+.. +.+..+++|++|+|..|.|. .+.+ ..+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 34445555555442 1 1123455555555555555422 22445555555555555544 2221 1234444555444
Q ss_pred ecCc
Q 040876 251 VNEN 254 (343)
Q Consensus 251 l~~n 254 (343)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 4443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.86 E-value=0.27 Score=38.05 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=43.2
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+.++ ++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+. .++...|..+
T Consensus 7 ~F~~~--~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNC--SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTT---TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHhCC--CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 34555 6788887764 455344455677777888887765 5433334566666788887765 333 4555456667
Q ss_pred CCCCeEEecC
Q 040876 244 TKLSVFSVNE 253 (343)
Q Consensus 244 ~~L~~L~l~~ 253 (343)
++|+.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 7777766654
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.83 E-value=0.073 Score=25.75 Aligned_cols=11 Identities=64% Similarity=0.951 Sum_probs=3.4
Q ss_pred CcEEEccCccC
Q 040876 221 LRILHLSDNKL 231 (343)
Q Consensus 221 L~~L~l~~N~l 231 (343)
|++|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.32 E-value=0.0041 Score=53.17 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=69.3
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+... +..+.||++.|++. .+...++-++.|..|+++.|.+. ..|+.++....++.+++..|..+ ..|. +++..
T Consensus 37 ei~~~--kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~ 110 (326)
T KOG0473|consen 37 EIASF--KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKE 110 (326)
T ss_pred hhhcc--ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccccc
Confidence 44555 78888999988877 45566777788888889888887 77888888888888888888886 7787 78888
Q ss_pred CCCCeEEecCceee
Q 040876 244 TKLSVFSVNENNLT 257 (343)
Q Consensus 244 ~~L~~L~l~~n~l~ 257 (343)
+.++.+++..|.++
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888777654
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.71 E-value=0.27 Score=26.51 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=10.2
Q ss_pred CCCcEEEccCccCccccCh
Q 040876 219 SKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 219 ~~L~~L~l~~N~l~g~~p~ 237 (343)
++|++|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666655 5554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.71 E-value=0.27 Score=26.51 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=10.2
Q ss_pred CCCcEEEccCccCccccCh
Q 040876 219 SKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 219 ~~L~~L~l~~N~l~g~~p~ 237 (343)
++|++|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666655 5554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.30 E-value=0.011 Score=50.67 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=68.7
Q ss_pred cccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchh
Q 040876 111 WLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQ 190 (343)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~ 190 (343)
.+..+...+.||++.|. +. .+-..++-+ +.+..|+++.|++. .+|..
T Consensus 37 ei~~~kr~tvld~~s~r-------------~v-----------------n~~~n~s~~--t~~~rl~~sknq~~-~~~~d 83 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-------------LV-----------------NLGKNFSIL--TRLVRLDLSKNQIK-FLPKD 83 (326)
T ss_pred hhhccceeeeehhhhhH-------------HH-----------------hhccchHHH--HHHHHHhccHhhHh-hChhh
Confidence 36677778888887776 11 223334445 77888899999888 78898
Q ss_pred ccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCc
Q 040876 191 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 191 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
+++...+..+++..|..+ ..|.+++..+.++++++-.|.+.
T Consensus 84 ~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 84 AKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 998888999999888887 78889999999999998888765
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.29 E-value=0.35 Score=26.01 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=10.2
Q ss_pred CCCCEEECcCCcccccCCc
Q 040876 195 KNLDTLDLGNNSIVGLVPL 213 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~ 213 (343)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 3443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.29 E-value=0.35 Score=26.01 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=10.2
Q ss_pred CCCCEEECcCCcccccCCc
Q 040876 195 KNLDTLDLGNNSIVGLVPL 213 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~ 213 (343)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 3443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.11 E-value=0.2 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=7.8
Q ss_pred CCccEEEeecCcccccc
Q 040876 171 KGLEILVLRSSSISGHL 187 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~ 187 (343)
++|++|++++|+|+...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555555555555433
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.52 E-value=0.35 Score=26.71 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=11.6
Q ss_pred CCCcEEEccCCccccccC
Q 040876 300 SNLVYLDLFNNSFLGSIS 317 (343)
Q Consensus 300 ~~L~~L~Ls~N~l~~~~~ 317 (343)
++|++|+|++|.+.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 456777777777765443
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.19 E-value=1 Score=43.28 Aligned_cols=60 Identities=25% Similarity=0.249 Sum_probs=26.1
Q ss_pred CCccEEEeecCc-cccccchhccC-CCCCCEEECcCCc-ccccCCc-cccCCCCCcEEEccCcc
Q 040876 171 KGLEILVLRSSS-ISGHLTEQIGH-FKNLDTLDLGNNS-IVGLVPL-SLNELSKLRILHLSDNK 230 (343)
Q Consensus 171 ~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~N~-l~~~~p~-~l~~l~~L~~L~l~~N~ 230 (343)
++|+.|+++++. ++...-..+.. +++|++|.+.++. ++..--. ....++.|++|+++.+.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 455555555555 33222222222 4555555544444 3322111 11234555555555554
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.49 E-value=2.4 Score=23.04 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=8.1
Q ss_pred CCCCEEECcCCccc
Q 040876 195 KNLDTLDLGNNSIV 208 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~ 208 (343)
++|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=0.52 Score=39.68 Aligned_cols=33 Identities=36% Similarity=0.357 Sum_probs=14.7
Q ss_pred CCCCEEECcCC-cccccCCccccCCCCCcEEEcc
Q 040876 195 KNLDTLDLGNN-SIVGLVPLSLNELSKLRILHLS 227 (343)
Q Consensus 195 ~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~l~ 227 (343)
++|+.|++++| .||..--..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 45555555544 2332222333444455544443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.93 E-value=2.8 Score=22.74 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=5.0
Q ss_pred CCEEECcCCccc
Q 040876 197 LDTLDLGNNSIV 208 (343)
Q Consensus 197 L~~L~Ls~N~l~ 208 (343)
|++|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 344444444443
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=70.73 E-value=2.6 Score=39.48 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=38.5
Q ss_pred hcCCCCCccEEEeecCc-cccccchhc-cCCCCCCEEECcCCccc--ccCCccccCCCCCcEEEccCccC
Q 040876 166 SGCVSKGLEILVLRSSS-ISGHLTEQI-GHFKNLDTLDLGNNSIV--GLVPLSLNELSKLRILHLSDNKL 231 (343)
Q Consensus 166 ~~l~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~l 231 (343)
.+. .+|+++.++.++ ++..--..+ .+.+.|+.+++...... +++..--.+++.|+++.++.+..
T Consensus 317 ~~~--~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 317 QHC--HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred cCC--CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 455 788888888776 332111222 24577888888777543 11222224677888888887754
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=1.1 Score=37.88 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCccccc-CCcccc-CCCCCcEEEccCcc-CccccChHhhhcCCCCC
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL-VPLSLN-ELSKLRILHLSDNK-LNGTLSEIHFVNLTKLS 247 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~-~l~~L~~L~l~~N~-l~g~~p~~~~~~l~~L~ 247 (343)
-.++.+|-++..|..+--+.+.+++.++.|.+.+++--+. .-+.++ -.++|+.|++++|. |+ +---..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 4678888888888876667777888888888887753211 111222 34689999999774 55 22222556677777
Q ss_pred eEEecC
Q 040876 248 VFSVNE 253 (343)
Q Consensus 248 ~L~l~~ 253 (343)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 766643
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=69.20 E-value=2.9 Score=39.26 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=15.7
Q ss_pred CCCCcEEEccCccCccccChHhhhcCCCCCeEEecC
Q 040876 218 LSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNE 253 (343)
Q Consensus 218 l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~ 253 (343)
+..|..+.++++...-+-....+..++.|+.+++.+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 345555556555443111111333445555544443
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=66.26 E-value=2.9 Score=40.14 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=6.1
Q ss_pred CCCCCEEECcCCc
Q 040876 194 FKNLDTLDLGNNS 206 (343)
Q Consensus 194 l~~L~~L~Ls~N~ 206 (343)
++.|++|+++++.
T Consensus 294 ~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 294 CPSLRELDLSGCH 306 (482)
T ss_pred cCcccEEeeecCc
Confidence 3445555555443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.24 E-value=14 Score=35.39 Aligned_cols=60 Identities=23% Similarity=0.147 Sum_probs=30.1
Q ss_pred CccEEEeecCccccccchhccC---CCCCCEEECcCCccccc---CCccccCCCCCcEEEccCccC
Q 040876 172 GLEILVLRSSSISGHLTEQIGH---FKNLDTLDLGNNSIVGL---VPLSLNELSKLRILHLSDNKL 231 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~l~~N~l 231 (343)
.+.+++++.|.....+|..+.. -..++.++.+...+.-. -+-..+.-++++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 5677788877777666654322 23455555555443210 111122334555555555544
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.07 E-value=7.6 Score=37.79 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCCCcEEEccCccCccccChH--hhhcCCCCCeEEecCceeeEeEEeccCCcccc--cCCCcccccCCCeEeCcCCccc
Q 040876 217 ELSKLRILHLSDNKLNGTLSEI--HFVNLTKLSVFSVNENNLTLKFLDLGENQIHG--EMTNLTNATQLWYLRLHSNNFS 292 (343)
Q Consensus 217 ~l~~L~~L~l~~N~l~g~~p~~--~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~--~~~~~~~~~~L~~L~Ls~N~l~ 292 (343)
+.+.+..+.+++|++. .+... .-...++|..|+|++|.. .+.. +++. ++...|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~----------~~~~~~el~K-~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHS----------KISSESELDK-LKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchh----------hhcchhhhhh-hcCCCHHHeeecCCccc
Confidence 4456667777777764 22110 223346666666666511 2211 1111 22236777788888776
Q ss_pred C
Q 040876 293 G 293 (343)
Q Consensus 293 ~ 293 (343)
.
T Consensus 284 ~ 284 (585)
T KOG3763|consen 284 T 284 (585)
T ss_pred c
Confidence 5
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.51 E-value=10 Score=36.95 Aligned_cols=78 Identities=26% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCccEEEeecCcccc--ccchhccCCCCCCEEECcCC--cccccCCccccC--CCCCcEEEccCccCccccCh--Hhh--
Q 040876 171 KGLEILVLRSSSISG--HLTEQIGHFKNLDTLDLGNN--SIVGLVPLSLNE--LSKLRILHLSDNKLNGTLSE--IHF-- 240 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~--l~~L~~L~l~~N~l~g~~p~--~~~-- 240 (343)
+.+..+.|++|++.. .+..--...++|++|+|++| .+... .++.+ ...|++|-+.+|.+...+.. ..+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 677888899998762 11111234588999999999 44311 23333 23588899999988643221 112
Q ss_pred --hcCCCCCeEE
Q 040876 241 --VNLTKLSVFS 250 (343)
Q Consensus 241 --~~l~~L~~L~ 250 (343)
..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2456666654
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.99 E-value=18 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.0
Q ss_pred CCCCCEecCCCCC
Q 040876 115 LTHLEQLSVADRP 127 (343)
Q Consensus 115 l~~L~~L~Ls~n~ 127 (343)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888876
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.40 E-value=55 Score=31.57 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=13.0
Q ss_pred CCccEEEeecCccccccchh
Q 040876 171 KGLEILVLRSSSISGHLTEQ 190 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~ 190 (343)
+.+++++++.|.+....|..
T Consensus 165 pr~r~~dls~npi~dkvpih 184 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIH 184 (553)
T ss_pred chhhhhccCCCcccccCCcc
Confidence 55677777777776555443
No 94
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.42 E-value=29 Score=23.95 Aligned_cols=8 Identities=25% Similarity=0.899 Sum_probs=5.6
Q ss_pred CCCCCccc
Q 040876 58 IGGDCCTW 65 (343)
Q Consensus 58 ~~~~~c~w 65 (343)
.+.+||.|
T Consensus 60 ~~~~CC~~ 67 (75)
T PF02950_consen 60 RNSECCSG 67 (75)
T ss_dssp TTTCBSSS
T ss_pred CCCCCCCC
Confidence 45677887
No 95
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=24.01 E-value=53 Score=18.28 Aligned_cols=15 Identities=40% Similarity=1.183 Sum_probs=9.0
Q ss_pred CCCCC--CCCCCccccc
Q 040876 53 LASWN--IGGDCCTWAG 67 (343)
Q Consensus 53 ~~~W~--~~~~~c~w~g 67 (343)
+..|. ...+||.|.-
T Consensus 4 l~~~~Cssdk~CCg~tp 20 (30)
T PF08093_consen 4 LTFWRCSSDKDCCGWTP 20 (30)
T ss_dssp -SSSB-SSCCCCCTT--
T ss_pred eeceeecCCcccccCcc
Confidence 34564 6689999983
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.70 E-value=55 Score=38.51 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=22.5
Q ss_pred ECcCCcccccCCccccCCCCCcEEEccCccCc
Q 040876 201 DLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 201 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57778887444445667778888888887764
No 97
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.81 E-value=36 Score=25.05 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=3.7
Q ss_pred CcchhhHHH
Q 040876 1 MSVVLVFAL 9 (343)
Q Consensus 1 m~~~~~~~l 9 (343)
|+-..+++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 544443333
Done!