Query 040876
Match_columns 343
No_of_seqs 468 out of 2755
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2E-41 6.9E-46 308.5 22.2 270 30-342 2-306 (313)
2 3rgz_A Protein brassinosteroid 100.0 5.8E-39 2E-43 325.5 19.9 297 29-342 7-357 (768)
3 4eco_A Uncharacterized protein 100.0 8.6E-35 2.9E-39 288.9 20.8 290 29-341 25-446 (636)
4 4fcg_A Uncharacterized protein 100.0 8.1E-34 2.8E-38 259.9 13.7 256 29-341 22-314 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 6.7E-33 2.3E-37 281.7 21.1 78 27-127 262-359 (876)
6 3rgz_A Protein brassinosteroid 100.0 1.1E-31 3.8E-36 272.1 19.3 219 101-343 404-719 (768)
7 3v47_A TOLL-like receptor 5B a 100.0 4.3E-28 1.5E-32 231.1 22.4 118 220-342 276-409 (455)
8 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-28 5.4E-33 223.3 15.7 204 116-342 50-282 (313)
9 2z66_A Variable lymphocyte rec 99.9 1.2E-26 4.2E-31 209.8 19.0 227 62-342 6-262 (306)
10 2id5_A Lingo-1, leucine rich r 99.9 2.1E-26 7.3E-31 220.9 17.7 235 100-342 65-334 (477)
11 1wwl_A Monocyte differentiatio 99.9 3.4E-28 1.2E-32 221.0 4.4 243 53-343 21-311 (312)
12 3v47_A TOLL-like receptor 5B a 99.9 2.7E-26 9.3E-31 218.6 17.2 171 165-342 125-385 (455)
13 3zyj_A Leucine-rich repeat-con 99.9 9.8E-26 3.3E-30 214.3 20.8 175 161-341 104-292 (440)
14 2z80_A TOLL-like receptor 2, v 99.9 1.3E-26 4.5E-31 214.0 13.4 245 56-343 23-316 (353)
15 3zyi_A Leucine-rich repeat-con 99.9 9.5E-26 3.3E-30 215.1 18.5 204 102-341 86-303 (452)
16 3o6n_A APL1; leucine-rich repe 99.9 3.1E-26 1.1E-30 214.3 14.7 103 112-232 65-178 (390)
17 3oja_B Anopheles plasmodium-re 99.9 4.6E-26 1.6E-30 224.7 15.9 103 112-232 71-184 (597)
18 2id5_A Lingo-1, leucine rich r 99.9 5.3E-25 1.8E-29 211.2 20.3 213 100-316 89-336 (477)
19 3t6q_A CD180 antigen; protein- 99.9 2.2E-25 7.4E-30 219.9 17.5 233 100-342 287-561 (606)
20 3t6q_A CD180 antigen; protein- 99.9 7.5E-25 2.6E-29 216.1 20.8 234 101-342 264-537 (606)
21 1xku_A Decorin; proteoglycan, 99.9 3.8E-24 1.3E-28 195.6 22.9 248 61-339 29-330 (330)
22 4eco_A Uncharacterized protein 99.9 2.1E-25 7.1E-30 221.5 15.1 247 76-340 250-578 (636)
23 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.1E-29 192.3 19.2 213 60-342 2-219 (270)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-24 4.5E-29 210.6 19.1 145 192-343 321-483 (520)
25 2z7x_B TOLL-like receptor 1, v 99.9 7.1E-25 2.4E-29 212.4 17.1 121 216-342 321-458 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-24 4.7E-29 212.6 18.1 145 192-342 350-511 (562)
27 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-24 7.7E-29 197.3 18.1 236 62-341 32-307 (332)
28 1xku_A Decorin; proteoglycan, 99.9 4.6E-24 1.6E-28 195.0 19.2 216 100-341 61-306 (330)
29 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-24 1.1E-28 214.4 19.7 231 75-342 25-343 (680)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-24 5.1E-29 222.0 17.2 95 244-342 266-376 (844)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-24 9.6E-29 210.4 18.1 163 172-342 277-487 (562)
32 3vq2_A TLR4, TOLL-like recepto 99.9 7.4E-24 2.5E-28 209.0 20.8 107 75-189 32-171 (606)
33 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.9E-29 197.9 14.5 189 115-343 80-292 (328)
34 4ecn_A Leucine-rich repeat pro 99.9 2.5E-24 8.7E-29 218.8 16.3 170 160-342 562-767 (876)
35 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-24 2.1E-28 209.5 17.1 216 100-342 316-559 (606)
36 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-24 5.3E-29 211.3 11.0 230 62-341 3-264 (549)
37 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-23 5.8E-28 187.3 16.9 204 100-342 20-239 (285)
38 4g8a_A TOLL-like receptor 4; l 99.9 3.7E-23 1.3E-27 204.3 20.1 121 76-232 53-186 (635)
39 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-24 2.6E-28 206.4 14.5 172 160-343 324-512 (549)
40 3o6n_A APL1; leucine-rich repe 99.9 4.4E-23 1.5E-27 192.8 18.7 91 100-210 78-180 (390)
41 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-23 7.1E-28 213.5 17.9 249 63-342 14-352 (844)
42 1ziw_A TOLL-like receptor 3; i 99.9 8.3E-23 2.9E-27 204.2 21.0 235 100-342 338-623 (680)
43 2z62_A TOLL-like receptor 4, v 99.9 9.5E-23 3.3E-27 181.6 18.6 192 116-342 28-238 (276)
44 3oja_B Anopheles plasmodium-re 99.9 5.3E-23 1.8E-27 202.8 18.4 91 100-210 84-186 (597)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.7E-23 1.6E-27 188.5 16.6 205 108-342 48-278 (332)
46 4glp_A Monocyte differentiatio 99.9 7.7E-23 2.6E-27 185.4 17.7 203 117-343 65-309 (310)
47 3g06_A SSPH2 (leucine-rich rep 99.9 8.2E-24 2.8E-28 208.4 12.0 252 53-342 12-298 (622)
48 1wwl_A Monocyte differentiatio 99.9 3.5E-24 1.2E-28 194.5 7.7 206 111-342 38-288 (312)
49 2z80_A TOLL-like receptor 2, v 99.9 1.7E-23 5.7E-28 193.1 11.5 217 102-342 42-291 (353)
50 2z66_A Variable lymphocyte rec 99.9 1.3E-22 4.6E-27 183.3 17.1 199 108-342 22-237 (306)
51 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-23 1.6E-27 184.5 13.8 189 96-316 37-241 (285)
52 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-23 2E-27 186.8 14.3 195 76-313 35-250 (317)
53 2z63_A TOLL-like receptor 4, v 99.9 6.1E-23 2.1E-27 200.7 15.2 216 100-343 291-533 (570)
54 3zyi_A Leucine-rich repeat-con 99.9 2.7E-22 9.2E-27 191.2 18.9 196 108-342 69-280 (452)
55 3oja_A Leucine-rich immune mol 99.9 9.2E-23 3.1E-27 196.2 15.6 204 76-341 35-250 (487)
56 4fmz_A Internalin; leucine ric 99.9 3.2E-22 1.1E-26 183.8 18.5 160 165-341 173-346 (347)
57 4fmz_A Internalin; leucine ric 99.9 1.4E-21 4.9E-26 179.5 21.0 217 112-342 84-325 (347)
58 2z62_A TOLL-like receptor 4, v 99.9 3.9E-22 1.3E-26 177.6 16.5 198 76-317 29-241 (276)
59 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5E-26 186.8 21.4 244 75-342 68-367 (466)
60 3m19_A Variable lymphocyte rec 99.9 5.6E-22 1.9E-26 174.3 16.8 190 60-316 2-195 (251)
61 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.4E-28 196.2 5.7 228 108-343 24-318 (386)
62 1o6v_A Internalin A; bacterial 99.9 2.1E-21 7.1E-26 185.8 19.9 161 165-342 217-389 (466)
63 2z63_A TOLL-like receptor 4, v 99.9 1.1E-21 3.7E-26 191.8 17.8 146 75-256 28-189 (570)
64 3zyj_A Leucine-rich repeat-con 99.9 1.8E-21 6.1E-26 184.9 18.7 202 100-342 52-269 (440)
65 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-21 7.6E-26 185.1 19.2 159 165-342 123-300 (457)
66 1jl5_A Outer protein YOPM; leu 99.9 4.7E-21 1.6E-25 182.6 20.5 104 100-232 140-270 (454)
67 3rfs_A Internalin B, repeat mo 99.9 4.2E-22 1.4E-26 177.2 12.4 136 164-314 80-219 (272)
68 1jl5_A Outer protein YOPM; leu 99.9 5.3E-22 1.8E-26 189.2 13.8 216 75-314 11-271 (454)
69 1p9a_G Platelet glycoprotein I 99.9 3.8E-21 1.3E-25 172.6 18.4 192 112-342 6-209 (290)
70 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4.2E-27 188.0 7.9 222 101-342 8-298 (362)
71 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-21 2.2E-25 181.8 18.5 167 165-342 144-332 (457)
72 3oja_A Leucine-rich immune mol 99.9 3E-21 1E-25 185.7 13.6 188 108-342 22-228 (487)
73 2ast_B S-phase kinase-associat 99.9 3.4E-22 1.1E-26 182.8 6.2 235 60-342 34-307 (336)
74 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-22 7.1E-27 192.0 3.8 232 108-342 105-412 (461)
75 3rfs_A Internalin B, repeat mo 99.8 2.9E-20 9.8E-25 165.3 17.2 159 164-343 58-220 (272)
76 3cvr_A Invasion plasmid antige 99.8 5.3E-21 1.8E-25 186.3 13.3 197 55-342 35-244 (571)
77 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-21 2.3E-25 173.1 12.8 197 110-341 28-250 (317)
78 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4.1E-25 170.9 14.2 149 165-342 81-231 (308)
79 2o6q_A Variable lymphocyte rec 99.8 9.8E-20 3.4E-24 161.6 19.1 202 52-316 3-221 (270)
80 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-22 1.3E-26 190.1 2.6 220 108-342 48-327 (461)
81 2xwt_C Thyrotropin receptor; s 99.8 4.4E-20 1.5E-24 160.8 14.3 156 160-339 70-237 (239)
82 4glp_A Monocyte differentiatio 99.8 7.5E-21 2.6E-25 172.3 9.1 145 166-315 142-309 (310)
83 2xwt_C Thyrotropin receptor; s 99.8 5.2E-20 1.8E-24 160.4 13.7 184 108-342 26-219 (239)
84 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.7E-24 161.5 17.2 171 108-314 25-209 (290)
85 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.7E-24 154.3 14.1 137 163-318 46-183 (208)
86 3goz_A Leucine-rich repeat-con 99.8 2.5E-20 8.7E-25 172.5 8.4 197 130-341 22-266 (362)
87 4b8c_D Glucose-repressible alc 99.8 3.3E-21 1.1E-25 193.7 1.1 252 30-341 128-404 (727)
88 3g06_A SSPH2 (leucine-rich rep 99.8 9.1E-19 3.1E-23 172.5 18.3 199 95-341 44-274 (622)
89 1h6u_A Internalin H; cell adhe 99.8 6.6E-19 2.2E-23 159.4 15.8 180 75-314 41-231 (308)
90 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 150.7 16.5 165 55-296 11-176 (229)
91 2ca6_A RAN GTPase-activating p 99.8 2.7E-20 9.1E-25 173.7 6.2 201 128-342 30-288 (386)
92 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.3E-23 160.3 16.7 171 160-338 69-256 (350)
93 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.7E-24 165.4 8.8 202 117-342 48-285 (336)
94 3m19_A Variable lymphocyte rec 99.8 2.4E-18 8.1E-23 151.0 14.5 162 160-342 28-193 (251)
95 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 148.7 11.4 155 160-342 21-179 (208)
96 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.7E-23 154.6 13.9 170 112-341 42-213 (291)
97 4g8a_A TOLL-like receptor 4; l 99.8 9.2E-18 3.1E-22 165.6 17.4 175 160-342 388-581 (635)
98 1m9s_A Internalin B; cell inva 99.8 1E-17 3.5E-22 164.6 15.6 149 164-341 60-210 (605)
99 2xot_A Amphoterin-induced prot 99.7 3.5E-18 1.2E-22 158.1 10.8 162 160-342 32-203 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8.3E-22 141.8 15.1 131 172-315 33-168 (220)
101 2v9t_B SLIT homolog 2 protein 99.7 3.2E-17 1.1E-21 141.0 15.0 139 159-314 24-166 (220)
102 1xeu_A Internalin C; cellular 99.7 5.6E-18 1.9E-22 149.8 10.5 152 160-342 33-186 (263)
103 3e6j_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 140.9 15.6 140 159-316 32-175 (229)
104 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6.1E-22 142.6 12.8 149 174-342 14-166 (220)
105 4ezg_A Putative uncharacterize 99.7 1.1E-17 3.8E-22 141.3 10.9 151 166-342 41-195 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 7.7E-22 142.0 13.0 149 174-342 14-167 (220)
107 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.7E-22 140.7 11.4 154 113-314 41-195 (197)
108 1h6t_A Internalin B; cell adhe 99.7 1.1E-17 3.8E-22 150.1 11.4 160 98-314 53-214 (291)
109 4ay9_X Follicle-stimulating ho 99.7 2.7E-17 9.3E-22 151.4 11.2 174 160-341 23-215 (350)
110 2xot_A Amphoterin-induced prot 99.7 6.3E-17 2.2E-21 149.6 12.7 136 164-314 58-203 (361)
111 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 157.5 14.4 163 112-315 39-212 (605)
112 1xeu_A Internalin C; cellular 99.7 1E-16 3.4E-21 141.7 11.5 150 111-315 36-187 (263)
113 1dce_A Protein (RAB geranylger 99.7 3.3E-18 1.1E-22 167.1 1.7 194 113-335 346-567 (567)
114 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4E-21 134.5 9.4 115 108-257 23-139 (192)
115 4b8c_D Glucose-repressible alc 99.7 3.4E-17 1.2E-21 164.5 4.2 139 160-317 215-358 (727)
116 3cvr_A Invasion plasmid antige 99.6 1.2E-15 4E-20 148.7 14.4 148 160-342 73-221 (571)
117 1dce_A Protein (RAB geranylger 99.6 6.2E-18 2.1E-22 165.1 -2.0 175 128-342 347-547 (567)
118 1w8a_A SLIT protein; signaling 99.6 2.2E-16 7.6E-21 132.8 7.8 120 160-296 22-143 (192)
119 2wfh_A SLIT homolog 2 protein 99.6 5.4E-15 1.9E-19 124.4 13.4 115 108-257 25-139 (193)
120 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 124.2 9.4 129 171-314 24-161 (168)
121 2o6r_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 121.4 12.2 91 163-256 46-136 (177)
122 2je0_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 120.5 9.0 83 171-256 17-100 (149)
123 3ogk_B Coronatine-insensitive 99.6 6.4E-16 2.2E-20 151.6 5.8 191 108-316 285-529 (592)
124 3ogk_B Coronatine-insensitive 99.6 5.7E-16 1.9E-20 152.0 4.8 60 280-342 464-527 (592)
125 2ell_A Acidic leucine-rich nuc 99.6 5.7E-15 2E-19 121.2 9.4 119 160-295 40-163 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 9.2E-15 3.1E-19 117.4 8.5 112 108-252 34-148 (149)
127 1ds9_A Outer arm dynein; leuci 99.5 8.2E-17 2.8E-21 136.0 -4.5 157 164-342 13-186 (198)
128 2wfh_A SLIT homolog 2 protein 99.5 3.7E-14 1.3E-18 119.2 11.0 116 160-293 24-140 (193)
129 2o6r_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 116.0 11.1 113 171-296 28-141 (177)
130 1a9n_A U2A', U2A'; complex (nu 99.5 6.4E-14 2.2E-18 115.9 8.8 130 165-314 15-154 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.5 5.8E-14 2E-18 116.1 7.1 134 112-293 15-154 (176)
132 2p1m_B Transport inhibitor res 99.5 5.3E-15 1.8E-19 145.1 0.4 171 164-341 309-519 (594)
133 2p1m_B Transport inhibitor res 99.4 4.3E-14 1.5E-18 138.5 5.1 176 160-342 280-495 (594)
134 1ds9_A Outer arm dynein; leuci 99.4 3.3E-15 1.1E-19 126.1 -2.7 134 159-314 38-186 (198)
135 3g39_A Variable lymphocyte rec 99.4 3.4E-13 1.2E-17 110.9 8.3 92 160-256 23-114 (170)
136 2r9u_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 109.4 8.3 92 160-256 26-117 (174)
137 3un9_A NLR family member X1; l 99.4 4.4E-14 1.5E-18 130.9 -0.8 162 171-341 72-252 (372)
138 3g39_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 104.7 10.7 109 172-296 10-119 (170)
139 2r9u_A Variable lymphocyte rec 99.3 7.1E-12 2.4E-16 103.4 10.9 108 173-296 14-122 (174)
140 3un9_A NLR family member X1; l 99.3 1.8E-13 6E-18 126.8 0.0 162 171-341 101-283 (372)
141 2ifg_A High affinity nerve gro 99.3 1.6E-11 5.4E-16 112.4 11.3 93 108-233 24-117 (347)
142 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.1E-16 112.5 9.6 78 258-341 228-310 (329)
143 3sb4_A Hypothetical leucine ri 99.2 5.9E-11 2E-15 107.9 10.4 99 218-335 225-328 (329)
144 2ifg_A High affinity nerve gro 99.2 3.4E-11 1.2E-15 110.2 8.7 94 159-257 22-116 (347)
145 2ra8_A Uncharacterized protein 99.0 1.8E-10 6E-15 106.0 6.2 170 160-342 130-321 (362)
146 3rw6_A Nuclear RNA export fact 98.9 9.4E-10 3.2E-14 96.5 5.8 81 166-250 167-257 (267)
147 4fdw_A Leucine rich hypothetic 98.8 1.3E-07 4.6E-12 88.1 17.0 164 163-340 174-357 (401)
148 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.3E-14 98.4 3.4 188 109-339 132-341 (362)
149 4fdw_A Leucine rich hypothetic 98.8 1.7E-07 5.7E-12 87.4 15.3 167 160-340 194-382 (401)
150 1io0_A Tropomodulin; LRR prote 98.7 3.1E-09 1.1E-13 88.3 0.2 35 280-314 122-165 (185)
151 1io0_A Tropomodulin; LRR prote 98.6 1.9E-08 6.6E-13 83.5 4.6 93 160-255 56-162 (185)
152 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 9E-12 80.9 2.8 143 62-225 77-257 (267)
153 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 68.9 3.8 83 171-254 61-149 (176)
154 4fs7_A Uncharacterized protein 97.9 0.00026 9E-09 65.4 14.7 201 111-338 157-376 (394)
155 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.4E-10 65.4 3.4 68 163-232 79-153 (176)
156 4fs7_A Uncharacterized protein 97.6 0.0022 7.5E-08 59.1 17.1 215 111-338 89-353 (394)
157 1pgv_A TMD-1, tropomodulin TMD 97.6 1.5E-05 5.1E-10 66.2 1.8 114 214-340 36-169 (197)
158 4gt6_A Cell surface protein; l 97.5 0.0014 4.9E-08 60.4 14.1 127 190-340 260-390 (394)
159 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0002 6.9E-09 59.4 2.5 88 240-338 37-136 (197)
160 4gt6_A Cell surface protein; l 96.9 0.0041 1.4E-07 57.3 9.4 130 164-312 260-390 (394)
161 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.7E-08 49.3 6.3 52 260-313 12-68 (130)
162 4h09_A Hypothetical leucine ri 96.7 0.0062 2.1E-07 55.6 9.5 85 164-253 235-319 (379)
163 3rfe_A Platelet glycoprotein I 96.3 0.0075 2.5E-07 46.4 6.2 36 196-231 32-67 (130)
164 4h09_A Hypothetical leucine ri 96.3 0.028 9.5E-07 51.2 10.9 128 164-310 212-343 (379)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-41 Score=308.52 Aligned_cols=270 Identities=28% Similarity=0.422 Sum_probs=228.1
Q ss_pred CCcHHHHHHHHHhhhhCCCCCCCCCCCCCCCCCcc--ccceEeCCCC--CcEEEEecCCCccccccccceeCCCCCCCCC
Q 040876 30 GCLESEREALLRFKQDLQDPSNRLASWNIGGDCCT--WAGIVCDNVT--GHIIELNLRNPFTYYRRSRYKANPRSMLVGK 105 (343)
Q Consensus 30 ~~~~~~~~~L~~~k~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~ 105 (343)
.|.++|++||++||+++.+|. .+.+|..+.+||. |.||+|+..+ ++|+.+++++. .+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~----------------~l~~ 64 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL----------------NLPK 64 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC----------------CCSS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC----------------CccC
Confidence 588999999999999998876 7889988889998 9999998655 89999999986 4444
Q ss_pred --CCCCccccCCCCCCEecCCC-CC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCC
Q 040876 106 --GPIPSWLYRLTHLEQLSVAD-RP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSK 171 (343)
Q Consensus 106 --~~ip~~l~~l~~L~~L~Ls~-n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~ 171 (343)
. +|+.++++++|++|++++ |. .+++|++|++++| +. +.+|+.+.++ +
T Consensus 65 ~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----------------~~~p~~~~~l--~ 125 (313)
T 1ogq_A 65 PYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----------------GAIPDFLSQI--K 125 (313)
T ss_dssp CEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE----------------EECCGGGGGC--T
T ss_pred Ccc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC----------------CcCCHHHhCC--C
Confidence 3 888999999999999995 65 5667888999888 77 5788888888 8
Q ss_pred CccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCC-CCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 172 GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS-KLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
+|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|++++.+|. .+..++ |+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEE
Confidence 999999999999988898899999999999999999888898898887 899999999999888887 777777 99999
Q ss_pred ecCceee------------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc---CCCCcEEEccCCccccc
Q 040876 251 VNENNLT------------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 251 l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~ 315 (343)
+++|.++ ++.|++++|++++.+|......+|++|++++|++++.+|.. +++|++|++++|.++|.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9998876 56789999998877776333338999999999998877765 67889999999999887
Q ss_pred cCchhhccCCccccCceEecCCCc-ccc
Q 040876 316 ISHFWCYRSNETKRLRALSLGDNY-LQG 342 (343)
Q Consensus 316 ~~~~l~~~l~~l~~L~~L~ls~N~-l~g 342 (343)
+|. . ..+++|+.+++++|+ +.|
T Consensus 284 ip~----~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 284 IPQ----G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCC----S-TTGGGSCGGGTCSSSEEES
T ss_pred CCC----C-ccccccChHHhcCCCCccC
Confidence 662 2 678889999999987 554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-39 Score=325.51 Aligned_cols=297 Identities=24% Similarity=0.338 Sum_probs=196.2
Q ss_pred CCCcHHHHHHHHHhhhhCCCCCCCCCCCCCCCCCccccceEeCCCCCcEEEEecCCCccccccccce---eCCC------
Q 040876 29 MGCLESEREALLRFKQDLQDPSNRLASWNIGGDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYK---ANPR------ 99 (343)
Q Consensus 29 ~~~~~~~~~~L~~~k~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~---~~~~------ 99 (343)
+.+.++|++||++||+++.||. .+++|+.+.+||.|.||+|+ .+||+.+||++. ++.|. +|+.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-----~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-----PLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-----CCCEEHHHHHHHTTTCTT
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC-----CcCCccCccChhHhccCc
Confidence 3457899999999999999988 89999888999999999998 689999999987 66665 4431
Q ss_pred ----CCCCCCC-CCCccccCCCCCCEecCCCCC------------CCCCCcccccchh-hcccccccC---CCcc----c
Q 040876 100 ----SMLVGKG-PIPSWLYRLTHLEQLSVADRP------------SLASREDQDLLSN-IRQRLSKCR---TGAK----S 154 (343)
Q Consensus 100 ----~n~~~~~-~ip~~l~~l~~L~~L~Ls~n~------------~l~~L~~L~l~~n-l~~~l~~~~---~~~~----~ 154 (343)
++.+.+. ++|+.++++++|++|+|++|. .+++|++|++++| +.+...... +... +
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 2222222 123556666666666666654 3445666666666 443211100 0000 0
Q ss_pred -cCc-ccchhhh---hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCc
Q 040876 155 -SQE-ISDIFDI---FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDN 229 (343)
Q Consensus 155 -~~~-~~~ip~~---l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 229 (343)
... .+..|.. +.++ ++|++|++++|.+++..|. ..+++|++|++++|.+++.+|. ++++++|++|++++|
T Consensus 159 s~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp CSSCCEEETHHHHHHTTCC--TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred CCCccCCcCChhhhhhccC--CCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 000 0334444 5666 7777777777777765543 6677777777777777766665 777777888888777
Q ss_pred cCccccChHhhhcCCCCCeEEecCceee----------EeEEeccCCcccccCCCcccc--cCCCeEeCcCCcccCcccc
Q 040876 230 KLNGTLSEIHFVNLTKLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNA--TQLWYLRLHSNNFSGPLSL 297 (343)
Q Consensus 230 ~l~g~~p~~~~~~l~~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~--~~L~~L~Ls~N~l~~~~~~ 297 (343)
.+++.+|. .+..+++|++|++++|.++ ++.|++++|++++.+|..+.. .+|++|++++|++++.+|.
T Consensus 234 ~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 234 KLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp CCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred cCCCcccH-HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 77766666 6777777777777777764 456777777777766665543 2777777777777766665
Q ss_pred c---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 298 I---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 298 ~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
. +++|++|++++|.++|.+|. ..+.++++|++|++++|+++|
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~---~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCH---HHHTTCTTCCEEECCSSEEEE
T ss_pred HHhcCCCccEEECCCCcccCcCCH---HHHhcCCCCCEEeCcCCccCc
Confidence 4 56677777777777666552 124556666666666666554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-35 Score=288.94 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=210.8
Q ss_pred CCCcHHHHHHHHHhhhhCCCCCCC--------CCCCCCCCCCccc---cceEeCCCCCcEEEEecCCCccccccccceeC
Q 040876 29 MGCLESEREALLRFKQDLQDPSNR--------LASWNIGGDCCTW---AGIVCDNVTGHIIELNLRNPFTYYRRSRYKAN 97 (343)
Q Consensus 29 ~~~~~~~~~~L~~~k~~~~~~~~~--------~~~W~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~ 97 (343)
++....|++||.++++++.++... ..+|+.+.+||.| .||+|+.. +||++|+|++. ++.|.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~-----~l~g~-- 96 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF-----GASGR-- 96 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS-----CCEEE--
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCc-----ccCCc--
Confidence 345567999999999998655322 2479988999999 99999864 89999999986 44443
Q ss_pred CCCCCCCCCCCCccccCCCCCCEecCCCCC--------------------------------------------------
Q 040876 98 PRSMLVGKGPIPSWLYRLTHLEQLSVADRP-------------------------------------------------- 127 (343)
Q Consensus 98 ~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~-------------------------------------------------- 127 (343)
+|+.++++++|++|+|++|.
T Consensus 97 ----------lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 97 ----------VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp ----------ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred ----------CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 78889999999999999882
Q ss_pred -------------------------------------CCCCCcccccchh-hccc-ccccCCCccccCcccchhhhhh--
Q 040876 128 -------------------------------------SLASREDQDLLSN-IRQR-LSKCRTGAKSSQEISDIFDIFS-- 166 (343)
Q Consensus 128 -------------------------------------~l~~L~~L~l~~n-l~~~-l~~~~~~~~~~~~~~~ip~~l~-- 166 (343)
.+++|++|++++| +++. ....+.........+.+|+.++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~ 246 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhc
Confidence 2334566666666 5520 0000000000000011888888
Q ss_pred cCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCc-ccc-cCCccccCC------CCCcEEEccCccCccccCh-
Q 040876 167 GCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNS-IVG-LVPLSLNEL------SKLRILHLSDNKLNGTLSE- 237 (343)
Q Consensus 167 ~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~l~~N~l~g~~p~- 237 (343)
++ ++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|.
T Consensus 247 ~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~ 323 (636)
T 4eco_A 247 NL--KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE 323 (636)
T ss_dssp GC--TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred cc--CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch
Confidence 88 999999999999999999999999999999999998 888 788888776 88999999999998 7875
Q ss_pred HhhhcCCCCCeEEecCceee-----------EeEEeccCCcccccCCCccccc-C-CCeEeCcCCcccCccccc-----C
Q 040876 238 IHFVNLTKLSVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNAT-Q-LWYLRLHSNNFSGPLSLI-----S 299 (343)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~-~-L~~L~Ls~N~l~~~~~~~-----~ 299 (343)
..++.+++|++|++++|.++ ++.|++++|+++ .+|..+... + |++|++++|.++ .+|.. +
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 35788899999999988776 556888888888 666656555 6 888888888888 45544 2
Q ss_pred CCCcEEEccCCccccccCchhh-ccC--CccccCceEecCCCccc
Q 040876 300 SNLVYLDLFNNSFLGSISHFWC-YRS--NETKRLRALSLGDNYLQ 341 (343)
Q Consensus 300 ~~L~~L~Ls~N~l~~~~~~~l~-~~l--~~l~~L~~L~ls~N~l~ 341 (343)
++|++|++++|.+++..|..++ ... ..+++|++|++++|.|+
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 3688888888888876654332 000 14456666666666654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=8.1e-34 Score=259.91 Aligned_cols=256 Identities=19% Similarity=0.241 Sum_probs=180.6
Q ss_pred CCCcHHHHHHHHHhhhhC-CCCCCCCCCC----CCCCCCccccceEeCC--------CCCcEEEEecCCCccccccccce
Q 040876 29 MGCLESEREALLRFKQDL-QDPSNRLASW----NIGGDCCTWAGIVCDN--------VTGHIIELNLRNPFTYYRRSRYK 95 (343)
Q Consensus 29 ~~~~~~~~~~L~~~k~~~-~~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~g~ 95 (343)
..+..+|++||++||..+ .++.++..+| ....++|.|.|+.|+. ...+|+.|+++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 456778999999999988 4777777889 3567899999999952 3478999999985
Q ss_pred eCCCCCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccE
Q 040876 96 ANPRSMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEI 175 (343)
Q Consensus 96 ~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~ 175 (343)
.++. +|+.++++++|++|++++|. + ..+|+.++++ ++|++
T Consensus 92 ------~l~~--lp~~l~~l~~L~~L~L~~n~-------------l-----------------~~lp~~~~~l--~~L~~ 131 (328)
T 4fcg_A 92 ------PLPQ--FPDQAFRLSHLQHMTIDAAG-------------L-----------------MELPDTMQQF--AGLET 131 (328)
T ss_dssp ------CCSS--CCSCGGGGTTCSEEEEESSC-------------C-----------------CCCCSCGGGG--TTCSE
T ss_pred ------Cchh--cChhhhhCCCCCEEECCCCC-------------c-----------------cchhHHHhcc--CCCCE
Confidence 5552 88889999999999999987 1 2344444555 55555
Q ss_pred EEeecCccccccchhccCCCCCCEEECcCCcccccCCccccC---------CCCCcEEEccCccCccccChHhhhcCCCC
Q 040876 176 LVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNE---------LSKLRILHLSDNKLNGTLSEIHFVNLTKL 246 (343)
Q Consensus 176 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---------l~~L~~L~l~~N~l~g~~p~~~~~~l~~L 246 (343)
|++++|.++ .+|..++++++|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|. .+..+++|
T Consensus 132 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~-~l~~l~~L 208 (328)
T 4fcg_A 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNL 208 (328)
T ss_dssp EEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG-GGGGCTTC
T ss_pred EECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH-hhcCCCCC
Confidence 555555555 44555555555555555555554455544432 555555555555554 4554 45555555
Q ss_pred CeEEecCceee-----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCc
Q 040876 247 SVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNS 311 (343)
Q Consensus 247 ~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~ 311 (343)
++|++++|.++ ++.|++++|++.+.+|..+... +|++|++++|.+.+.+|.. +++|++|++++|.
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 55555555443 3446666777788888877777 9999999999999988865 7899999999999
Q ss_pred cccccCchhhccCCccccCceEecCCCccc
Q 040876 312 FLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 312 l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
+.+.+| ..+.++++|+.+++..|.+.
T Consensus 289 ~~~~iP----~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 289 NLSRLP----SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCCCC----GGGGGSCTTCEEECCGGGSC
T ss_pred chhhcc----HHHhhccCceEEeCCHHHHH
Confidence 988776 56678999999999987654
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-33 Score=281.71 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=63.3
Q ss_pred CCCCCcHHHHHHHHHhhhhCCCCCCCCCCCCCC-----CCC--ccc------------cceEeCCCCCcEEEEecCCCcc
Q 040876 27 DHMGCLESEREALLRFKQDLQDPSNRLASWNIG-----GDC--CTW------------AGIVCDNVTGHIIELNLRNPFT 87 (343)
Q Consensus 27 ~~~~~~~~~~~~L~~~k~~~~~~~~~~~~W~~~-----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~ 87 (343)
+.+++..+|++||++||+++.+| +|+.+ .+| |.| .||+|+. .+||++|+|++.
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-- 333 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-- 333 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC--
Confidence 34566778999999999999776 57533 355 999 9999986 699999999986
Q ss_pred ccccccceeCCCCCCCCCCCCCccccCCCCCCEecC-CCCC
Q 040876 88 YYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSV-ADRP 127 (343)
Q Consensus 88 ~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~L-s~n~ 127 (343)
++.|. +|+.++++++|++|+| ++|.
T Consensus 334 ---~L~G~------------ip~~l~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 334 ---GAKGR------------VPDAIGQLTELKVLSFGTHSE 359 (876)
T ss_dssp ---CCEEE------------ECGGGGGCTTCCEEESCCTTH
T ss_pred ---CCCCc------------CchHHhccccceEeeeccccc
Confidence 44443 8889999999999999 6663
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.1e-31 Score=272.12 Aligned_cols=219 Identities=26% Similarity=0.367 Sum_probs=172.8
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCC
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCV 169 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~ 169 (343)
|.+++. +|..++++++|++|++++|. .+++|+.|++++| +. +.+|..+..+
T Consensus 404 n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~----------------~~~p~~~~~l- 465 (768)
T 3rgz_A 404 NGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE----------------GEIPQELMYV- 465 (768)
T ss_dssp SEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC----------------SCCCGGGGGC-
T ss_pred Cccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc----------------CcCCHHHcCC-
Confidence 333333 55555555555555555554 2344555555555 44 4677778888
Q ss_pred CCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 170 SKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 170 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++|++|++++|++++.+|..+.++++|++|++++|++++.+|..++.+++|++|++++|+++|.+|. .+..+++|+.|
T Consensus 466 -~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L 543 (768)
T 3rgz_A 466 -KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWL 543 (768)
T ss_dssp -TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEE
T ss_pred -CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEE
Confidence 8888888888888888888888888888888888888888888888888888888888888878887 77888888888
Q ss_pred EecCceee------------------------------------------------------------------------
Q 040876 250 SVNENNLT------------------------------------------------------------------------ 257 (343)
Q Consensus 250 ~l~~n~l~------------------------------------------------------------------------ 257 (343)
++++|.++
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 88887664
Q ss_pred ----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhcc
Q 040876 258 ----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYR 323 (343)
Q Consensus 258 ----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~ 323 (343)
++.||+++|+++|.+|..++.. .|+.|+|++|+++|.+|.. +++|++|||++|+++|.+| ..
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip----~~ 699 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP----QA 699 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC----GG
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC----hH
Confidence 3459999999999999988888 9999999999999999976 7899999999999999876 55
Q ss_pred CCccccCceEecCCCccccC
Q 040876 324 SNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 324 l~~l~~L~~L~ls~N~l~g~ 343 (343)
+..++.|++||+++|+++|+
T Consensus 700 l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEE
T ss_pred HhCCCCCCEEECcCCccccc
Confidence 67899999999999999883
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.3e-28 Score=231.09 Aligned_cols=118 Identities=20% Similarity=0.162 Sum_probs=80.6
Q ss_pred CCcEEEccCccCccccChHhhhcCCCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeC
Q 040876 220 KLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRL 286 (343)
Q Consensus 220 ~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~L 286 (343)
+|++|++++|.+++..|. .+..+++|++|++++|.++ ++.|++++|.+++..|..+... +|++|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 444555555555433444 5666777777777777664 5567777777776666666655 7888888
Q ss_pred cCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 287 HSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 287 s~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++|++++..|.. +++|++|++++|.+++.. +..+..+++|++|++++|++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCC----HhHhccCCcccEEEccCCCccc
Confidence 888887766654 577888888888877633 2345678888888888888876
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.6e-28 Score=223.32 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=185.5
Q ss_pred CCCCEecCCCCC------------CCCCCcccccch-h-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecC
Q 040876 116 THLEQLSVADRP------------SLASREDQDLLS-N-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSS 181 (343)
Q Consensus 116 ~~L~~L~Ls~n~------------~l~~L~~L~l~~-n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n 181 (343)
.++++|++++|. .+++|++|++++ | +. +.+|+.+.++ ++|++|++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----------------~~~p~~l~~l--~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----------------GPIPPAIAKL--TQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----------------SCCCGGGGGC--TTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----------------ccCChhHhcC--CCCCEEECcCC
Confidence 478889998886 456799999994 6 77 5889999999 99999999999
Q ss_pred ccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC-CCCeEEecCceee---
Q 040876 182 SISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT-KLSVFSVNENNLT--- 257 (343)
Q Consensus 182 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~-~L~~L~l~~n~l~--- 257 (343)
.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|. .+..++ +|++|++++|.++
T Consensus 112 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEEEEC
T ss_pred eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeeeccC
Confidence 99999999999999999999999999999999999999999999999999989998 888888 9999999999986
Q ss_pred --------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhccCCc
Q 040876 258 --------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYRSNE 326 (343)
Q Consensus 258 --------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 326 (343)
++.|++++|.+++.+|..+... +|++|++++|++++.+|.. +++|++|++++|.+++.+| ..+..
T Consensus 191 ~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~ 266 (313)
T 1ogq_A 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP----QGLTQ 266 (313)
T ss_dssp CGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC----GGGGG
T ss_pred ChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC----hHHhc
Confidence 6779999999999888888777 9999999999999877765 7899999999999998765 55678
Q ss_pred cccCceEecCCCcccc
Q 040876 327 TKRLRALSLGDNYLQG 342 (343)
Q Consensus 327 l~~L~~L~ls~N~l~g 342 (343)
+++|++|++++|+|+|
T Consensus 267 l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CTTCCEEECCSSEEEE
T ss_pred CcCCCEEECcCCcccc
Confidence 9999999999999986
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-26 Score=209.85 Aligned_cols=227 Identities=23% Similarity=0.268 Sum_probs=148.5
Q ss_pred CccccceEeCCCC---------CcEEEEecCCCccccccccceeCCCCCCCCCCCCCcc-ccCCCCCCEecCCCCC----
Q 040876 62 CCTWAGIVCDNVT---------GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSW-LYRLTHLEQLSVADRP---- 127 (343)
Q Consensus 62 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~-l~~l~~L~~L~Ls~n~---- 127 (343)
.|.|.+|.|.... ..++.|+++++ .++. +|.. +.++++|++|++++|.
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n----------------~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESN----------------KLQS--LPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSS----------------CCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC----------------ccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence 3899999997521 24666666653 5554 5554 6889999999999887
Q ss_pred --------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccc-hhccCCCCC
Q 040876 128 --------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLT-EQIGHFKNL 197 (343)
Q Consensus 128 --------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L 197 (343)
.+++|++|++++| +. .+|..+.++ ++|++|++++|.+++..+ ..+..+++|
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~-----------------~l~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVI-----------------TMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEE-----------------EEEEEEETC--TTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred cCcccccccccccCEEECCCCccc-----------------cChhhcCCC--CCCCEEECCCCcccccccchhhhhccCC
Confidence 2445555665555 43 344445555 566666666666554332 345555666
Q ss_pred CEEECcCCcccccCCccccCCCCCcEEEccCccCcc-ccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcc
Q 040876 198 DTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG-TLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLT 276 (343)
Q Consensus 198 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g-~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~ 276 (343)
++|++++|.+++..|..+..+++|++|++++|.+++ .+|. .+..+++|++| ++++|++++..|..+
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L------------~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFL------------DLSQCQLEQLSPTAF 195 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEE------------ECTTSCCCEECTTTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEE------------ECCCCCcCCcCHHHh
Confidence 666666666655555555556666666666665553 2444 45555555555 455566666666666
Q ss_pred ccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCcc-ccCceEecCCCcccc
Q 040876 277 NAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNET-KRLRALSLGDNYLQG 342 (343)
Q Consensus 277 ~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l-~~L~~L~ls~N~l~g 342 (343)
... +|++|++++|++++..+.. +++|++|++++|.+++..| ..+..+ ++|++|++++|++++
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS----SSCCCCCTTCCEEECTTCCEEC
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH----HHHHhhhccCCEEEccCCCeec
Confidence 665 8999999999998765533 6789999999999887654 455666 489999999998875
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=220.89 Aligned_cols=235 Identities=22% Similarity=0.229 Sum_probs=122.7
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccc----c-CCCcc-c-cCcc-cc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSK----C-RTGAK-S-SQEI-SD 160 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~----~-~~~~~-~-~~~~-~~ 160 (343)
+|.+++. .|..+.++++|++|+|++|. .+++|++|++++| +.+.... + ++..+ + ...+ +.
T Consensus 65 ~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 65 ENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred CCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 5556554 46667777777777777665 3455677777766 5421000 0 00000 0 0000 11
Q ss_pred hhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh
Q 040876 161 IFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF 240 (343)
Q Consensus 161 ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~ 240 (343)
.|..+.++ ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|. ..
T Consensus 144 ~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 220 (477)
T 2id5_A 144 SHRAFSGL--NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NC 220 (477)
T ss_dssp CTTSSTTC--TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TT
T ss_pred ChhhccCC--CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-cc
Confidence 12233444 4444444444444433333344444444444444444433333444444444444444444444444 22
Q ss_pred hcCCCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcE
Q 040876 241 VNLTKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVY 304 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~ 304 (343)
....+|+.|++++|.++ ++.|++++|.+++..+..+... +|++|++++|++++..|.. +++|++
T Consensus 221 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE
Confidence 23335555555555543 4556777776666555555544 7777777777777655544 567777
Q ss_pred EEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 305 LDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 305 L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
|++++|.+++.. +..+..+++|+.|++++|++++
T Consensus 301 L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 301 LNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEEC
T ss_pred EECCCCcCceeC----HhHcCCCcccCEEEccCCCccC
Confidence 777777776532 2345667778888888877654
No 11
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.4e-28 Score=220.98 Aligned_cols=243 Identities=19% Similarity=0.189 Sum_probs=184.8
Q ss_pred CCCCCCCCCCccccceEeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC-----
Q 040876 53 LASWNIGGDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----- 127 (343)
Q Consensus 53 ~~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----- 127 (343)
...|.....|+.+..+.......+++.++++++ .+ . +|..+... |++|++++|.
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n----------------~l--~-~p~~~~~~--L~~L~L~~n~l~~~~ 79 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVD----------------TE--A-DLGQFTDI--IKSLSLKRLTVRAAR 79 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCC----------------TT--C-CCHHHHHH--HHHCCCCEEEEEEEE
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccc----------------cc--c-cHHHHHHH--HhhcccccccccCCC
Confidence 456755556666665443222234555555543 44 1 66655544 7777777765
Q ss_pred -------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhh--hcCCCCCccEEEeecCccccccchhc
Q 040876 128 -------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIF--SGCVSKGLEILVLRSSSISGHLTEQI 191 (343)
Q Consensus 128 -------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l--~~l~~~~L~~L~L~~n~l~~~~p~~l 191 (343)
.+++|++|++++| +. +.+|..+ ..+ ++|++|++++|++++. |..+
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----------------~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVT----------------GTAPPPLLEATG--PDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCB----------------SCCCCCSSSCCS--CCCSEEEEESCBCSSS-SSHH
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCccc----------------chhHHHHHHhcC--CCccEEEccCCCCcch-hHHH
Confidence 1667888888888 76 4677765 778 9999999999999976 7777
Q ss_pred cCC-----CCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccc--cChHhh--hcCCCCCeEEecCceee-----
Q 040876 192 GHF-----KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGT--LSEIHF--VNLTKLSVFSVNENNLT----- 257 (343)
Q Consensus 192 ~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~--~p~~~~--~~l~~L~~L~l~~n~l~----- 257 (343)
+.+ ++|++|++++|++++..|..++.+++|++|++++|++.+. +|. .+ ..+++|++|++++|.++
T Consensus 141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS-ALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH-HSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH-HHHhccCCCCCEEECCCCcCcchHHH
Confidence 776 8999999999999987778899999999999999998765 233 33 78899999999999875
Q ss_pred ----------EeEEeccCCcccccCC-Cccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhhccC
Q 040876 258 ----------LKFLDLGENQIHGEMT-NLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRS 324 (343)
Q Consensus 258 ----------l~~L~ls~n~l~~~~~-~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l 324 (343)
++.|++++|++++.+| ..+... +|++|++++|+++. +|.. .++|++|++++|++++. | . +
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~~L~~L~Ls~N~l~~~-p----~-~ 292 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPAKLSVLDLSYNRLDRN-P----S-P 292 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCCSEEEEEECCSSCCCSC-C----C-T
T ss_pred HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhccCCceEEECCCCCCCCC-h----h-H
Confidence 5679999999998764 334434 99999999999994 4544 57899999999999875 3 3 6
Q ss_pred CccccCceEecCCCccccC
Q 040876 325 NETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 325 ~~l~~L~~L~ls~N~l~g~ 343 (343)
..+++|++|++++|+|+++
T Consensus 293 ~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 293 DELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTSCEEEEEECTTCTTTCC
T ss_pred hhCCCCCEEeccCCCCCCC
Confidence 7899999999999999874
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.7e-26 Score=218.63 Aligned_cols=171 Identities=23% Similarity=0.275 Sum_probs=103.1
Q ss_pred hhcCCCCCccEEEeecCccccccchh-ccCCCCCCEEECcCCcccccCCccccCC-------------------------
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQ-IGHFKNLDTLDLGNNSIVGLVPLSLNEL------------------------- 218 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------------------------- 218 (343)
+..+ ++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..+..+
T Consensus 125 ~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 202 (455)
T 3v47_A 125 FKPL--TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202 (455)
T ss_dssp TTTC--TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred ccCc--ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence 5556 66666666666666555554 5666666666666666665555444332
Q ss_pred ---------CCCcEEEccCccCccccChHhhhcC---------------------------------------CCCCeEE
Q 040876 219 ---------SKLRILHLSDNKLNGTLSEIHFVNL---------------------------------------TKLSVFS 250 (343)
Q Consensus 219 ---------~~L~~L~l~~N~l~g~~p~~~~~~l---------------------------------------~~L~~L~ 250 (343)
++|++|++++|.+++.+|. .+... ++|+.|+
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEE
T ss_pred cccccccccceeeeEecCCCcccccchh-hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEE
Confidence 4555666666655544433 22211 3455555
Q ss_pred ecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccc
Q 040876 251 VNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 251 l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~ 314 (343)
+++|.++ ++.|++++|++++..|..+... +|++|++++|.+++..|.. +++|++|++++|.+++
T Consensus 282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 5555543 4556666666666555555544 6777777777776655443 5667777777777766
Q ss_pred ccCchhhccCCccccCceEecCCCcccc
Q 040876 315 SISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 315 ~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
..| ..+..+++|++|++++|+|++
T Consensus 362 ~~~----~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 362 LGD----QSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ECT----TTTTTCTTCCEEECCSSCCSC
T ss_pred cCh----hhccccccccEEECCCCcccc
Confidence 543 455677788888888887764
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.8e-26 Score=214.29 Aligned_cols=175 Identities=22% Similarity=0.188 Sum_probs=140.7
Q ss_pred hhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh
Q 040876 161 IFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF 240 (343)
Q Consensus 161 ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~ 240 (343)
.+..+.++ ++|++|+|++|+++...+..+..+++|++|++++|.++...+..+..+++|++|++++|+..+.++...|
T Consensus 104 ~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 104 EIGAFNGL--ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp CGGGGTTC--SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred ChhhccCC--ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence 34567777 8888888888888865556688888888888888888866666778888888888888554446666567
Q ss_pred hcCCCCCeEEecCceee----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEE
Q 040876 241 VNLTKLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLD 306 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~ 306 (343)
.++++|++|++++|.++ ++.|++++|++++..|..+... +|++|++++|++++..+.. +++|++|+
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred hcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 78888888888888764 6778889999998878877777 9999999999999877665 68999999
Q ss_pred ccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 307 LFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 307 Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
|++|++++..+ ..+..+++|+.|++++|++.
T Consensus 262 L~~N~l~~~~~----~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 262 LAHNNLTLLPH----DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCCCCT----TTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCCCccCh----hHhccccCCCEEEcCCCCcc
Confidence 99999986543 45678899999999999875
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=213.99 Aligned_cols=245 Identities=18% Similarity=0.226 Sum_probs=180.7
Q ss_pred CCCCCCCccccceEeCCCC-----------CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCC
Q 040876 56 WNIGGDCCTWAGIVCDNVT-----------GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVA 124 (343)
Q Consensus 56 W~~~~~~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls 124 (343)
|.....+|.|.|+ |+-.. .+++.|+++++ .+++. .+..+.++++|++|+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n----------------~i~~~-~~~~~~~l~~L~~L~L~ 84 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN----------------RITYI-SNSDLQRCVNLQALVLT 84 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS----------------CCCEE-CTTTTTTCTTCCEEECT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC----------------cCccc-CHHHhccCCCCCEEECC
Confidence 4345567888887 65322 24666777654 55542 33478889999999999
Q ss_pred CCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhh-hhhcCCCCCccEEEeecCccccccch--h
Q 040876 125 DRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFD-IFSGCVSKGLEILVLRSSSISGHLTE--Q 190 (343)
Q Consensus 125 ~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~-~l~~l~~~~L~~L~L~~n~l~~~~p~--~ 190 (343)
+|. .+++|++|++++| ++ .+|. .+.++ ++|++|++++|++++ +|. .
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~~~~~~l--~~L~~L~L~~n~l~~-l~~~~~ 144 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLS-----------------NLSSSWFKPL--SSLTFLNLLGNPYKT-LGETSL 144 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCS-----------------SCCHHHHTTC--TTCSEEECTTCCCSS-SCSSCS
T ss_pred CCccCccCHhhcCCCCCCCEEECCCCcCC-----------------cCCHhHhCCC--ccCCEEECCCCCCcc-cCchhh
Confidence 887 4567888888888 76 4444 47788 899999999998884 554 6
Q ss_pred ccCCCCCCEEECcCC-cccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee------------
Q 040876 191 IGHFKNLDTLDLGNN-SIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT------------ 257 (343)
Q Consensus 191 l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~------------ 257 (343)
+.++++|++|++++| .+++..|..++.+++|++|++++|.+++..|. .+..+++|++|++++|.++
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSCSTTHHHHHHHHTTT
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-HHhccccCCeecCCCCccccchhhhhhhccc
Confidence 888899999999988 46655667788889999999999998866666 7888889999999888763
Q ss_pred EeEEeccCCcccccCCCccc---cc-CCCeEeCcCCcccC----ccccc---CCCCcEEEccCCccccccCchhhccCCc
Q 040876 258 LKFLDLGENQIHGEMTNLTN---AT-QLWYLRLHSNNFSG----PLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNE 326 (343)
Q Consensus 258 l~~L~ls~n~l~~~~~~~~~---~~-~L~~L~Ls~N~l~~----~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 326 (343)
++.|++++|.+++..+..+. .. .++.++++++.+++ .+|.. +++|++|++++|.++. +|. ..+..
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~---~~~~~ 299 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPD---GIFDR 299 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCT---TTTTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCH---HHHhc
Confidence 77889999988875443222 12 67888888888775 23432 7899999999999984 442 23478
Q ss_pred cccCceEecCCCccccC
Q 040876 327 TKRLRALSLGDNYLQGE 343 (343)
Q Consensus 327 l~~L~~L~ls~N~l~g~ 343 (343)
+++|++|++++|++++.
T Consensus 300 l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCCCCEEEeeCCCccCc
Confidence 99999999999999873
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.5e-26 Score=215.10 Aligned_cols=204 Identities=22% Similarity=0.161 Sum_probs=156.1
Q ss_pred CCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecC
Q 040876 102 LVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSS 181 (343)
Q Consensus 102 ~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n 181 (343)
++++. .|..+.++++|++|+|++|. +. +..|..+.++ ++|++|+|++|
T Consensus 86 ~i~~~-~~~~~~~l~~L~~L~Ls~n~-------------i~----------------~~~~~~~~~l--~~L~~L~L~~n 133 (452)
T 3zyi_A 86 NIQMI-QADTFRHLHHLEVLQLGRNS-------------IR----------------QIEVGAFNGL--ASLNTLELFDN 133 (452)
T ss_dssp CCCEE-CTTTTTTCTTCCEEECCSSC-------------CC----------------EECTTTTTTC--TTCCEEECCSS
T ss_pred cCceE-CHHHcCCCCCCCEEECCCCc-------------cC----------------CcChhhccCc--ccCCEEECCCC
Confidence 44443 45566777777777777665 33 2334667777 88888888888
Q ss_pred ccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee----
Q 040876 182 SISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT---- 257 (343)
Q Consensus 182 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~---- 257 (343)
.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++|+..+.++...+..+++|+.|++++|.++
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 8886555667778888888888888875555577788888888888754444666656777888888888888764
Q ss_pred ------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCcc
Q 040876 258 ------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNET 327 (343)
Q Consensus 258 ------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l 327 (343)
++.|++++|++++..|..+... +|++|++++|++++..+.. +++|++|+|++|++++..+ ..+..+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l 289 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH----DLFTPL 289 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT----TSSTTC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh----HHhccc
Confidence 6678888899988888877777 9999999999999877765 6899999999999986433 456789
Q ss_pred ccCceEecCCCccc
Q 040876 328 KRLRALSLGDNYLQ 341 (343)
Q Consensus 328 ~~L~~L~ls~N~l~ 341 (343)
++|+.|++++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 99999999999875
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-26 Score=214.26 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=51.1
Q ss_pred ccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeec
Q 040876 112 LYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRS 180 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~ 180 (343)
+..+++|++|++++|. .+++|++|++++| +. +..|..+.++ ++|++|++++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------------~~~~~~~~~l--~~L~~L~L~~ 126 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR----------------YLPPHVFQNV--PLLTVLVLER 126 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------------CCCTTTTTTC--TTCCEEECCS
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC----------------cCCHHHhcCC--CCCCEEECCC
Confidence 4556666666666654 3445666666655 44 1223334444 5555555555
Q ss_pred CccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCc
Q 040876 181 SSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 181 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
|.++...+..+.++++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 5555222222344555555555555554444444445555555555555444
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.6e-26 Score=224.68 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=50.5
Q ss_pred ccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeec
Q 040876 112 LYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRS 180 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~ 180 (343)
+.++++|++|++++|. .+++|++|++++| +. +..|..++++ ++|++|++++
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------------~~~~~~~~~l--~~L~~L~L~~ 132 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR----------------YLPPHVFQNV--PLLTVLVLER 132 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------------CCCTTTTTTC--TTCCEEECCS
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC----------------CCCHHHHcCC--CCCCEEEeeC
Confidence 4455556666665554 3344555555555 44 1223334444 5555555555
Q ss_pred CccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCc
Q 040876 181 SSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 181 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
|.+++..+..++.+++|++|++++|.+++..|..++.+++|++|++++|.++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 5555322233344555555555555555444444455555555555555444
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=211.18 Aligned_cols=213 Identities=16% Similarity=0.117 Sum_probs=169.5
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccc----ccc-CCCcc--ccCcccch
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRL----SKC-RTGAK--SSQEISDI 161 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l----~~~-~~~~~--~~~~~~~i 161 (343)
+|.++.. .+..+.++++|++|++++|. .+++|+.|++++| +.+.. ..+ .+..+ ....+..+
T Consensus 89 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 6777763 33457889999999999887 4667888888888 65431 110 11100 11122344
Q ss_pred h-hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh
Q 040876 162 F-DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF 240 (343)
Q Consensus 162 p-~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~ 240 (343)
| ..+.++ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|++|++++|+++ .+|...+
T Consensus 168 ~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~ 244 (477)
T 2id5_A 168 PTEALSHL--HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV 244 (477)
T ss_dssp CHHHHTTC--TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHH
T ss_pred ChhHhccc--CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHh
Confidence 4 468888 99999999999999877788999999999999999988888888777789999999999998 7886688
Q ss_pred hcCCCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcE
Q 040876 241 VNLTKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVY 304 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~ 304 (343)
..+++|+.|++++|.++ ++.|++++|++++..|..+... +|++|++++|++++..+.. +++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 99999999999999875 6779999999999888877777 9999999999999876654 678999
Q ss_pred EEccCCcccccc
Q 040876 305 LDLFNNSFLGSI 316 (343)
Q Consensus 305 L~Ls~N~l~~~~ 316 (343)
|++++|.+....
T Consensus 325 L~l~~N~l~c~c 336 (477)
T 2id5_A 325 LILDSNPLACDC 336 (477)
T ss_dssp EECCSSCEECSG
T ss_pred EEccCCCccCcc
Confidence 999999998653
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.2e-25 Score=219.95 Aligned_cols=233 Identities=19% Similarity=0.174 Sum_probs=177.2
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCcc-------c-cCcccc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAK-------S-SQEISD 160 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~-------~-~~~~~~ 160 (343)
+|.++. +|+.+..+++|++|++++|. .+++|+.|++++| +.+.+....+... + ...+..
T Consensus 287 ~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 287 ATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred CCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 677774 88888889999999999887 4667888888888 6543222111100 0 111122
Q ss_pred ---hhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCcc-ccCCCCCcEEEccCccCccccC
Q 040876 161 ---IFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS-LNELSKLRILHLSDNKLNGTLS 236 (343)
Q Consensus 161 ---ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~g~~p 236 (343)
.|..+.++ ++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..|
T Consensus 365 ~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 365 SDCCNLQLRNL--SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp EEESTTTTTTC--TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccCcchhcccC--CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 26677888 88889999888888777888888888999999998888766544 7888889999999998886666
Q ss_pred hHhhhcCCCCCeEEecCceee---------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--
Q 040876 237 EIHFVNLTKLSVFSVNENNLT---------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-- 298 (343)
Q Consensus 237 ~~~~~~l~~L~~L~l~~n~l~---------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-- 298 (343)
. .+..+++|++|++++|.++ ++.|++++|++++..|..+... +|++|++++|++++.+|..
T Consensus 443 ~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 443 Q-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp T-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred H-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 5 7888889999999888763 5668899999888877777666 8999999999998877765
Q ss_pred -CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 299 -SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 299 -~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++.| +|++++|.+++..| ..+..+++|+.|++++|++++
T Consensus 522 ~l~~L-~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 522 HLKGI-YLNLASNHISIILP----SLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TCCSC-EEECCSSCCCCCCG----GGHHHHHTSSEEECTTCCEEC
T ss_pred ccccc-EEECcCCcccccCH----hhcccCCCCCEEeCCCCCccc
Confidence 5667 88999999887544 445678889999999998875
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=7.5e-25 Score=216.09 Aligned_cols=234 Identities=19% Similarity=0.159 Sum_probs=135.1
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCC---------CCCCCcccccchh-hccccc----cc-CCCcc-ccC--cccchh
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRP---------SLASREDQDLLSN-IRQRLS----KC-RTGAK-SSQ--EISDIF 162 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~n-l~~~l~----~~-~~~~~-~~~--~~~~ip 162 (343)
|.+++. .+..++.+++|++|++++|. .+++|++|++++| +.+... .. .+..+ +.+ ..+.+|
T Consensus 264 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 264 HYFFNI-SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCCSSC-CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred CccCcc-CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 466664 55669999999999999998 4567999999999 763211 00 00000 000 012333
Q ss_pred h-hhhcCCCCCccEEEeecCcccccc--chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 163 D-IFSGCVSKGLEILVLRSSSISGHL--TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 163 ~-~l~~l~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
. .+.++ ++|++|++++|.+++.. +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|...
T Consensus 343 ~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 343 TGCLENL--ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp SSTTTTC--TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred hhhhhcc--CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 2 24555 56666666666655433 4455566666666666666655555556666666666666666654444323
Q ss_pred hhcCCCCCeEEecCceee------------EeEEeccCCccccc-C--CCccccc-CCCeEeCcCCcccCccccc---CC
Q 040876 240 FVNLTKLSVFSVNENNLT------------LKFLDLGENQIHGE-M--TNLTNAT-QLWYLRLHSNNFSGPLSLI---SS 300 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~-~--~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~ 300 (343)
+..+++|+.|++++|.++ ++.|++++|++++. + +..+... +|++|++++|++++.+|.. ++
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 555666666666666543 45566666666542 1 1233333 6666666666666555443 45
Q ss_pred CCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 301 NLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 301 ~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+|++|++++|++++..| ..+..++.| .|++++|++++
T Consensus 501 ~L~~L~Ls~N~l~~~~~----~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp TCCEEECCSSCCCGGGG----GGGTTCCSC-EEECCSSCCCC
T ss_pred CCCEEECCCCccCcCCh----hHhCccccc-EEECcCCcccc
Confidence 66666666666665432 444556666 66666666654
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.8e-24 Score=195.55 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=150.6
Q ss_pred CCccccceEeCCC---------CCcEEEEecCCCccccccccceeC-------------CCCCCCCCCCCCccccCCCCC
Q 040876 61 DCCTWAGIVCDNV---------TGHIIELNLRNPFTYYRRSRYKAN-------------PRSMLVGKGPIPSWLYRLTHL 118 (343)
Q Consensus 61 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~g~~~-------------~~~n~~~~~~ip~~l~~l~~L 118 (343)
..|.|+.+.|... ...++.++++++ .+.+..+ ..+|.+++. .|..++++++|
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n-----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L 102 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN-----KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKL 102 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS-----CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCC-----cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCC
Confidence 3578999999642 135667777765 2222111 114444443 34455555555
Q ss_pred CEecCCCCC-------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccc--ccc
Q 040876 119 EQLSVADRP-------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISG--HLT 188 (343)
Q Consensus 119 ~~L~Ls~n~-------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~--~~p 188 (343)
++|++++|. ..++|++|++++| +. +..+..+.++ ++|++|++++|.++. ..+
T Consensus 103 ~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~----------------~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMPKTLQELRVHENEIT----------------KVRKSVFNGL--NQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp CEEECCSSCCSBCCSSCCTTCCEEECCSSCCC----------------BBCHHHHTTC--TTCCEEECCSSCCCGGGBCT
T ss_pred CEEECCCCcCCccChhhcccccEEECCCCccc----------------ccCHhHhcCC--ccccEEECCCCcCCccCcCh
Confidence 555555554 1133555555555 43 2334456777 778888888777753 556
Q ss_pred hhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee-----------
Q 040876 189 EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT----------- 257 (343)
Q Consensus 189 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~----------- 257 (343)
..+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..|. .+..+++|+.|++++|.++
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 66777778888888887777 4555443 6778888888877744444 6777778888888777664
Q ss_pred -EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---------CCCCcEEEccCCccccccCchhhccCCc
Q 040876 258 -LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---------SSNLVYLDLFNNSFLGSISHFWCYRSNE 326 (343)
Q Consensus 258 -l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 326 (343)
++.|++++|+++ .+|..+... +|++|++++|++++..+.. ...++.+++++|.+.... ..|..+..
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~--i~~~~f~~ 317 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRC 317 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG--SCGGGGTT
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc--cCcccccc
Confidence 556777777777 455545444 7777777777777654433 245677777777765321 11345666
Q ss_pred cccCceEecCCCc
Q 040876 327 TKRLRALSLGDNY 339 (343)
Q Consensus 327 l~~L~~L~ls~N~ 339 (343)
+++++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 7777777777774
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.1e-25 Score=221.46 Aligned_cols=247 Identities=17% Similarity=0.198 Sum_probs=179.3
Q ss_pred cEEEEecCCCccccccccceeCCC-------------CCC-CCC-CCCCccccCC------CCCCEecCCCCC-------
Q 040876 76 HIIELNLRNPFTYYRRSRYKANPR-------------SML-VGK-GPIPSWLYRL------THLEQLSVADRP------- 127 (343)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~g~~~~~-------------~n~-~~~-~~ip~~l~~l------~~L~~L~Ls~n~------- 127 (343)
+++.|+++++ .+.|.+|.. +|. +++ . +|..++++ ++|++|++++|.
T Consensus 250 ~L~~L~L~~n-----~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 250 DLTDVEVYNC-----PNLTKLPTFLKALPEMQLINVACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp TCCEEEEECC-----TTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred CCCEEEecCC-----cCCccChHHHhcCCCCCEEECcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 4667777765 455555533 454 555 3 66666555 666666666665
Q ss_pred ----CCCCCcccccchh-hcccccccCCCcc--------ccCcccchhhhhhcCCCCC-ccEEEeecCccccccchhccC
Q 040876 128 ----SLASREDQDLLSN-IRQRLSKCRTGAK--------SSQEISDIFDIFSGCVSKG-LEILVLRSSSISGHLTEQIGH 193 (343)
Q Consensus 128 ----~l~~L~~L~l~~n-l~~~l~~~~~~~~--------~~~~~~~ip~~l~~l~~~~-L~~L~L~~n~l~~~~p~~l~~ 193 (343)
.+++|++|++++| +.|.++ .++.. ....+..+|+.+.++ ++ |++|++++|.++ .+|..+..
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l--~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGF--TEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEE--CTTCCEEECCSSCCS-SCCSCCCT
T ss_pred hhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhh--cccCcEEEccCCcCc-ccchhhhh
Confidence 2344666666666 554433 11110 112235788888888 88 999999999988 78887776
Q ss_pred CC--CCCEEECcCCcccccCCcccc-------CCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee-------
Q 040876 194 FK--NLDTLDLGNNSIVGLVPLSLN-------ELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT------- 257 (343)
Q Consensus 194 l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~------- 257 (343)
++ +|++|++++|.+++.+|..+. .+++|++|++++|.++ .+|...+..+++|+.|++++|.++
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 55 899999999999988888887 7789999999999998 788756677899999999998763
Q ss_pred ------------EeEEeccCCcccccCCCccc--cc-CCCeEeCcCCcccCccccc---CCCCcEEEcc------CCccc
Q 040876 258 ------------LKFLDLGENQIHGEMTNLTN--AT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLF------NNSFL 313 (343)
Q Consensus 258 ------------l~~L~ls~n~l~~~~~~~~~--~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls------~N~l~ 313 (343)
++.|++++|+++ .+|..+. .. +|++|++++|++++ +|.. +++|++|+++ +|.+.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 567999999998 5666554 44 99999999999998 5544 7889999984 56666
Q ss_pred cccCchhhccCCccccCceEecCCCcc
Q 040876 314 GSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 314 ~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+.+| ..+..+++|++|++++|+|
T Consensus 556 ~~~p----~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 556 REWP----EGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCC----TTGGGCSSCCEEECCSSCC
T ss_pred ccCh----HHHhcCCCCCEEECCCCcC
Confidence 6654 5566788888888888887
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=192.32 Aligned_cols=213 Identities=22% Similarity=0.249 Sum_probs=145.4
Q ss_pred CCCccccceEeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccch
Q 040876 60 GDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLS 139 (343)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~ 139 (343)
.++|.|.|+.|.- .+.++.+++++. .++. +|..+. +++++|++++|.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~----------------~l~~--ip~~~~--~~l~~L~l~~n~------------ 48 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK----------------KLTA--IPSNIP--ADTKKLDLQSNK------------ 48 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS----------------CCSS--CCSCCC--TTCSEEECCSSC------------
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC----------------CCCc--cCCCCC--CCCCEEECcCCC------------
Confidence 4789999998854 244567888775 3443 565544 578888888876
Q ss_pred hhcccccccCCCccccCcccchh-hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCC
Q 040876 140 NIRQRLSKCRTGAKSSQEISDIF-DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL 218 (343)
Q Consensus 140 nl~~~l~~~~~~~~~~~~~~~ip-~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 218 (343)
+. .+| ..+.++ ++|++|++++|.++...+..+.++++|++|++++|.+++..+..+..+
T Consensus 49 -l~-----------------~~~~~~~~~l--~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 49 -LS-----------------SLPSKAFHRL--TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp -CS-----------------CCCTTSSSSC--TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred -CC-----------------eeCHHHhcCC--CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 22 333 356777 788888888888875444556778888888888888876555566778
Q ss_pred CCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccc
Q 040876 219 SKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSL 297 (343)
Q Consensus 219 ~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~ 297 (343)
++|++|++++|.++ .++...+..+++|++|++++|. +++..+..+... +|++|++++|++++..+.
T Consensus 109 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE------------LQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCc------------CCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 88888888888887 4444367777887777666544 333334444444 778888888877776554
Q ss_pred c---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 298 I---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 298 ~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
. +++|++|++++|.+++..+ ..+..+++|+.|++++|+++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCeeC
Confidence 3 5677788888887775322 345667778888888877653
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=210.59 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=116.0
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc--ccChHhhhcCCCCCeEEecCceee------------
Q 040876 192 GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG--TLSEIHFVNLTKLSVFSVNENNLT------------ 257 (343)
Q Consensus 192 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~~~~~l~~L~~L~l~~n~l~------------ 257 (343)
..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|. .+..+++|++|++++|.++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 567888899999999988888888889999999999998874 4455 6788899999999988875
Q ss_pred -EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceE
Q 040876 258 -LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRAL 333 (343)
Q Consensus 258 -l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L 333 (343)
++.|++++|++++.+|..+. .+|++|++++|+++. +|.. +++|++|++++|++++ +|. ..+..+++|++|
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPD---GIFDRLTSLQKI 473 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCT---TTTTTCTTCCEE
T ss_pred cCCEEECcCCCCCcchhhhhc-ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCH---HHhccCCcccEE
Confidence 45688999988877665443 489999999999984 4442 7889999999999884 442 236788999999
Q ss_pred ecCCCccccC
Q 040876 334 SLGDNYLQGE 343 (343)
Q Consensus 334 ~ls~N~l~g~ 343 (343)
++++|++++.
T Consensus 474 ~l~~N~~~c~ 483 (520)
T 2z7x_B 474 WLHTNPWDCS 483 (520)
T ss_dssp ECCSSCBCCC
T ss_pred ECcCCCCccc
Confidence 9999998863
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=7.1e-25 Score=212.44 Aligned_cols=121 Identities=26% Similarity=0.314 Sum_probs=101.2
Q ss_pred cCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee--------------EeEEeccCCcccccCCC-ccccc-
Q 040876 216 NELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT--------------LKFLDLGENQIHGEMTN-LTNAT- 279 (343)
Q Consensus 216 ~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~--------------l~~L~ls~n~l~~~~~~-~~~~~- 279 (343)
..+++|++|++++|++++.+|. .+..+++|+.|++++|.++ ++.|++++|++++.+|. .+...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5778899999999999877777 7888999999999999875 56799999999985554 34445
Q ss_pred CCCeEeCcCCcccCcccccC-CCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 280 QLWYLRLHSNNFSGPLSLIS-SNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 280 ~L~~L~Ls~N~l~~~~~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+|++|++++|++++..|..+ ++|++|++++|+++ .+| ..+..+++|++|++++|+|++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip----~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIP----KQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCC----GGGGGCTTCCEEECCSSCCCC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccc----hhhhcCCCCCEEECCCCcCCc
Confidence 99999999999988877775 69999999999998 444 555689999999999999874
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.4e-24 Score=212.60 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=111.9
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc--ccChHhhhcCCCCCeEEecCceee------------
Q 040876 192 GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG--TLSEIHFVNLTKLSVFSVNENNLT------------ 257 (343)
Q Consensus 192 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~~~~~l~~L~~L~l~~n~l~------------ 257 (343)
..+++|++|++++|.+++.+|..++.+++|++|++++|++++ .+|. .+..+++|++|++++|.++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL-MTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH-TTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh-hhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 567788888888888888788888888888888888888873 2233 5778888888888888775
Q ss_pred -EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhccCCccccCceEe
Q 040876 258 -LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALS 334 (343)
Q Consensus 258 -l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ 334 (343)
++.|++++|++++.+|..+. .+|++|++++|+++..++.. +++|++|++++|++++ +|. ..+..+++|+.|+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~---~~~~~l~~L~~L~ 503 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPD---GVFDRLTSLQYIW 503 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCT---TSTTTCTTCCCEE
T ss_pred cCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCH---HHHhcCCCCCEEE
Confidence 45688888888876665443 47889999999888543333 6788999999999884 442 2367888999999
Q ss_pred cCCCcccc
Q 040876 335 LGDNYLQG 342 (343)
Q Consensus 335 ls~N~l~g 342 (343)
+++|++++
T Consensus 504 l~~N~~~c 511 (562)
T 3a79_B 504 LHDNPWDC 511 (562)
T ss_dssp CCSCCBCC
T ss_pred ecCCCcCC
Confidence 99999876
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.3e-24 Score=197.29 Aligned_cols=236 Identities=20% Similarity=0.253 Sum_probs=153.7
Q ss_pred CccccceEeCCCC---------CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC-----
Q 040876 62 CCTWAGIVCDNVT---------GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----- 127 (343)
Q Consensus 62 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----- 127 (343)
.|.|+.+.|.... .+++.|++++ |.+++. .|..+.++++|++|++++|.
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~----------------n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQN----------------NDISEL-RKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCS----------------SCCCEE-CTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCC----------------CcCCcc-CHhHhhCCCCCcEEECCCCccCccC
Confidence 3789999886421 2455566655 355543 45578888999999998887
Q ss_pred -----CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEE
Q 040876 128 -----SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLD 201 (343)
Q Consensus 128 -----~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 201 (343)
.+++|++|++++| +. .+|..+. ++|++|++++|.+++..+..+.++++|++|+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-----------------~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-----------------EIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-----------------SCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred HhHhhCcCCCCEEECCCCcCC-----------------ccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 4566777777777 54 4444433 5677777777777755555677777777777
Q ss_pred CcCCccc--ccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee------------EeEEeccCCc
Q 040876 202 LGNNSIV--GLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT------------LKFLDLGENQ 267 (343)
Q Consensus 202 Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~------------l~~L~ls~n~ 267 (343)
+++|.++ +..|..+..+ +|++|++++|.++ .+|. .+ .++|++|++++|.++ ++.|++++|+
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 7777774 2455566666 7777777777776 4665 22 257777777777664 4557777777
Q ss_pred ccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccC--CccccCceEecCCCccc
Q 040876 268 IHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRS--NETKRLRALSLGDNYLQ 341 (343)
Q Consensus 268 l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l--~~l~~L~~L~ls~N~l~ 341 (343)
+++..+..+... +|++|++++|+++. +|.. +++|++|++++|.+++..+..+.... ...+.|+.|++++|++.
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 776666555555 77777777777774 3332 66777777777777765433322110 12456777777777764
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=4.6e-24 Score=195.05 Aligned_cols=216 Identities=19% Similarity=0.225 Sum_probs=132.4
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGC 168 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l 168 (343)
+|.+++. .+..++++++|++|++++|. .+++|++|++++| ++ .+|..+.
T Consensus 61 ~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~l~~~~~-- 120 (330)
T 1xku_A 61 NNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-----------------ELPEKMP-- 120 (330)
T ss_dssp SSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-----------------BCCSSCC--
T ss_pred CCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-----------------ccChhhc--
Confidence 6666663 34467777777777777776 3455666666666 54 4444332
Q ss_pred CCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccc--cCCccccCCCCCcEEEccCccCccccChHhhhcCCCC
Q 040876 169 VSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVG--LVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKL 246 (343)
Q Consensus 169 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L 246 (343)
++|++|++++|.+++..+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|. .+ .++|
T Consensus 121 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~-~~--~~~L 194 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ-GL--PPSL 194 (330)
T ss_dssp --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS-SC--CTTC
T ss_pred --ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCc-cc--cccC
Confidence 566777777777776555566777777777777776642 45556667777777777777776 4554 22 2667
Q ss_pred CeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCc
Q 040876 247 SVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNS 311 (343)
Q Consensus 247 ~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~ 311 (343)
++|++++|.++ ++.|++++|.+++..+..+... +|++|++++|+++..+... +++|++|++++|.
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 77777776654 4557777777766555555544 6777777777766332222 5667777777777
Q ss_pred cccccCchhhcc--CCccccCceEecCCCccc
Q 040876 312 FLGSISHFWCYR--SNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 312 l~~~~~~~l~~~--l~~l~~L~~L~ls~N~l~ 341 (343)
+++..+..+... ....+.++.+++++|++.
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCccChhhcCCcccccccccccceEeecCccc
Confidence 765443322111 112356667777777653
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=3.2e-24 Score=214.42 Aligned_cols=231 Identities=26% Similarity=0.230 Sum_probs=127.3
Q ss_pred CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcc
Q 040876 75 GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQ 143 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~ 143 (343)
.+++.|+++++ .+++. .|..++++++|++|++++|. .+++|++|++++| +.
T Consensus 25 ~~l~~L~Ls~n----------------~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 86 (680)
T 1ziw_A 25 TNITVLNLTHN----------------QLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS- 86 (680)
T ss_dssp TTCSEEECCSS----------------CCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-
T ss_pred CCCcEEECCCC----------------CCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-
Confidence 46778888775 44442 33446666666666666664 3445666666665 44
Q ss_pred cccccCCCccccCcccchhh-hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCc
Q 040876 144 RLSKCRTGAKSSQEISDIFD-IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 222 (343)
Q Consensus 144 ~l~~~~~~~~~~~~~~~ip~-~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 222 (343)
.+|+ .+.++ ++|++|++++|.+++..|..++++++|++|++++|.+++..|..++++++|+
T Consensus 87 ----------------~l~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 87 ----------------QLSDKTFAFC--TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp ----------------CCCTTTTTTC--TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred ----------------ccChhhhccC--CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 2332 34444 5555555555555443334455555555555555555544444444555555
Q ss_pred EEEccCccCccccChHhhh--cCCCCCeEEecCceee---------------------------------------EeEE
Q 040876 223 ILHLSDNKLNGTLSEIHFV--NLTKLSVFSVNENNLT---------------------------------------LKFL 261 (343)
Q Consensus 223 ~L~l~~N~l~g~~p~~~~~--~l~~L~~L~l~~n~l~---------------------------------------l~~L 261 (343)
+|++++|.+++..+. .+. .+++|+.|++++|.++ ++.|
T Consensus 149 ~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 149 ELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp EEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred EEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence 555555554422221 222 2244444444444321 3556
Q ss_pred eccCCcccccCCCccccc---CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchh---------------
Q 040876 262 DLGENQIHGEMTNLTNAT---QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFW--------------- 320 (343)
Q Consensus 262 ~ls~n~l~~~~~~~~~~~---~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l--------------- 320 (343)
++++|.+++..|..+... +|++|++++|.+++..|.. +++|++|++++|.+++..|..+
T Consensus 228 ~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp ECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred EccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 777777776666655543 3777777777777665543 5677777777777766544221
Q ss_pred ----------hc----cCCccccCceEecCCCcccc
Q 040876 321 ----------CY----RSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 321 ----------~~----~l~~l~~L~~L~ls~N~l~g 342 (343)
|. .+..+++|++|++++|.+++
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 11 45566777777777777664
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=221.98 Aligned_cols=95 Identities=22% Similarity=0.200 Sum_probs=56.9
Q ss_pred CCCCeEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEc
Q 040876 244 TKLSVFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDL 307 (343)
Q Consensus 244 ~~L~~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~L 307 (343)
++|+.|++++|.++ ++.|++++|++++..|..+... +|++|++++|.+++..|.. +++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 34556666655542 4456666666666555555444 6666666666666554443 556666666
Q ss_pred cCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 308 FNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 308 s~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++|.+++..+ ..+..+++|+.|++++|.+++
T Consensus 346 ~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 346 QKNHIAIIQD----QTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCCCCCCCS----SCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCccCh----hhhcCCCCCCEEECCCCCCCc
Confidence 6666654332 345667777777777777653
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.8e-24 Score=210.39 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=125.2
Q ss_pred CccEEEeecCccccccchhc-----cCCC--------------------------CCCEEECcCCcccccCCccccCCCC
Q 040876 172 GLEILVLRSSSISGHLTEQI-----GHFK--------------------------NLDTLDLGNNSIVGLVPLSLNELSK 220 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l-----~~l~--------------------------~L~~L~Ls~N~l~~~~p~~l~~l~~ 220 (343)
+|++|++++|.++|.+|..+ .+++ +|++|++++|.+.... ....+++
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~ 354 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS 354 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence 67777777777777777655 2222 3555555555554211 1167889
Q ss_pred CcEEEccCccCccccChHhhhcCCCCCeEEecCceee--------------EeEEeccCCcccccCCC-ccccc-CCCeE
Q 040876 221 LRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT--------------LKFLDLGENQIHGEMTN-LTNAT-QLWYL 284 (343)
Q Consensus 221 L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~--------------l~~L~ls~n~l~~~~~~-~~~~~-~L~~L 284 (343)
|++|++++|.+++.+|. .+..+++|+.|++++|.++ ++.|++++|++++.+|. .+... +|++|
T Consensus 355 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred ceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 99999999999977777 7889999999999999875 56799999999985554 35555 99999
Q ss_pred eCcCCcccCcccccC-CCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 285 RLHSNNFSGPLSLIS-SNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 285 ~Ls~N~l~~~~~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++++|++++.+|..+ ++|++|++++|+++. + |..+..+++|++|++++|+|++
T Consensus 434 ~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-i----p~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-I----PKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp ECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-C----CTTTTSSCCCSEEECCSSCCCC
T ss_pred ECCCCCCCcchhhhhcCcCCEEECCCCcCcc-c----ChhhcCCCCCCEEECCCCCCCC
Confidence 999999998887776 689999999999983 4 4555688999999999999874
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=7.4e-24 Score=208.97 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=61.7
Q ss_pred CcEEEEecCCCccccccccceeC-------------CCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCC
Q 040876 75 GHIIELNLRNPFTYYRRSRYKAN-------------PRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLAS 131 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~~~-------------~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~ 131 (343)
.+++.++++++ .+.+..+ .++|.+++. .|..++++++|++|++++|. .+++
T Consensus 32 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFN-----PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCC-----CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 46788888876 3333222 125666664 45667777777777777775 4556
Q ss_pred Ccccccchh-hccccc--ccCCCc---c-cc-Ccc--cchhhhhhcCCCCCccEEEeecCccccccch
Q 040876 132 REDQDLLSN-IRQRLS--KCRTGA---K-SS-QEI--SDIFDIFSGCVSKGLEILVLRSSSISGHLTE 189 (343)
Q Consensus 132 L~~L~l~~n-l~~~l~--~~~~~~---~-~~-~~~--~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~ 189 (343)
|++|++++| +.+.-. -..+.. + +. ..+ ..+|..++++ ++|++|++++|++++..|.
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSSCCCEECTT
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCCcceecChh
Confidence 777777777 543210 000000 0 00 111 2467788888 8888888888877754443
No 33
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=197.93 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=166.1
Q ss_pred CCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCC
Q 040876 115 LTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHF 194 (343)
Q Consensus 115 l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l 194 (343)
.+++++|++++|. + ..+|+.+.++ ++|++|++++|.++ .+|..++++
T Consensus 80 ~~~l~~L~L~~n~-------------l-----------------~~lp~~l~~l--~~L~~L~L~~n~l~-~lp~~~~~l 126 (328)
T 4fcg_A 80 QPGRVALELRSVP-------------L-----------------PQFPDQAFRL--SHLQHMTIDAAGLM-ELPDTMQQF 126 (328)
T ss_dssp STTCCEEEEESSC-------------C-----------------SSCCSCGGGG--TTCSEEEEESSCCC-CCCSCGGGG
T ss_pred ccceeEEEccCCC-------------c-----------------hhcChhhhhC--CCCCEEECCCCCcc-chhHHHhcc
Confidence 4678888888776 3 3788888899 99999999999999 899999999
Q ss_pred CCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhh---------cCCCCCeEEecCceee--------
Q 040876 195 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFV---------NLTKLSVFSVNENNLT-------- 257 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~---------~l~~L~~L~l~~n~l~-------- 257 (343)
++|++|++++|.++ .+|..++++++|++|++++|++.+.+|. .+. .+++|++|++++|.++
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 99999999999999 8899999999999999999998888987 554 4999999999999875
Q ss_pred ---EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccC
Q 040876 258 ---LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRL 330 (343)
Q Consensus 258 ---l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L 330 (343)
++.|++++|++++..+ .+... +|++|++++|.+.+.+|.. +++|++|++++|.+.+.+| ..+..+++|
T Consensus 205 l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L 279 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIHRLTQL 279 (328)
T ss_dssp CTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGGGCTTC
T ss_pred CCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhhcCCCC
Confidence 6789999999996444 45555 9999999999999988876 7899999999999988776 556789999
Q ss_pred ceEecCCCccccC
Q 040876 331 RALSLGDNYLQGE 343 (343)
Q Consensus 331 ~~L~ls~N~l~g~ 343 (343)
+.|++++|++.|+
T Consensus 280 ~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 280 EKLDLRGCVNLSR 292 (328)
T ss_dssp CEEECTTCTTCCC
T ss_pred CEEeCCCCCchhh
Confidence 9999999998774
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.5e-24 Score=218.85 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=81.4
Q ss_pred chhh--hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCC-CcEEEccCccCccccC
Q 040876 160 DIFD--IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSK-LRILHLSDNKLNGTLS 236 (343)
Q Consensus 160 ~ip~--~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~g~~p 236 (343)
.+|. .++++ ++|++|++++|.++ .+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|
T Consensus 562 ~ip~~~~l~~L--~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 EFPASASLQKM--VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp BCCCHHHHTTC--TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred ccCChhhhhcC--CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 4444 45555 55555555555554 444 4455555555555555554 44444555554 555555555554 444
Q ss_pred hHhhhcCC--CCCeEEecCcee-----------------eEeEEeccCCcccccCCCcc-ccc-CCCeEeCcCCcccCcc
Q 040876 237 EIHFVNLT--KLSVFSVNENNL-----------------TLKFLDLGENQIHGEMTNLT-NAT-QLWYLRLHSNNFSGPL 295 (343)
Q Consensus 237 ~~~~~~l~--~L~~L~l~~n~l-----------------~l~~L~ls~n~l~~~~~~~~-~~~-~L~~L~Ls~N~l~~~~ 295 (343)
. .+..++ +|+.|++++|.+ .++.|++++|+++ .+|..+ ... +|+.|+|++|+++...
T Consensus 636 ~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 636 N-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp S-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred h-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 3 333332 244444444443 1334444444444 222222 122 5566666666555222
Q ss_pred cccCC----------CCcEEEccCCccccccCchhhccCC--ccccCceEecCCCcccc
Q 040876 296 SLISS----------NLVYLDLFNNSFLGSISHFWCYRSN--ETKRLRALSLGDNYLQG 342 (343)
Q Consensus 296 ~~~~~----------~L~~L~Ls~N~l~~~~~~~l~~~l~--~l~~L~~L~ls~N~l~g 342 (343)
+..+. +|++|+|++|+++ .+| ..+. .+++|+.|++++|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp----~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS----DDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC----GGGSTTTCTTCCEEECCSSCCSS
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cch----HHhhhccCCCcCEEEeCCCCCCc
Confidence 21111 5666666666665 233 3333 55666666666666553
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=6.2e-24 Score=209.52 Aligned_cols=216 Identities=21% Similarity=0.167 Sum_probs=182.5
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC--------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVS 170 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~ 170 (343)
+|.+ +. +| .+ .+++|++|++++|. .+++|++|++++| +.+ .+.+|..+..+
T Consensus 316 ~n~l-~~-lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--------------~~~~~~~~~~~-- 375 (606)
T 3vq2_A 316 RCQL-KQ-FP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF--------------SGCCSYSDLGT-- 375 (606)
T ss_dssp SCCC-SS-CC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE--------------EEECCHHHHCC--
T ss_pred cccC-cc-cc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC--------------CcchhhhhccC--
Confidence 5666 33 77 45 88999999999884 5678999999988 662 12357888899
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCC-ccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVP-LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++|++|++++|.+++ +|..+..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..|. .+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEE
Confidence 999999999999984 77889999999999999999997777 6788999999999999999877776 78899999999
Q ss_pred EecCceee-------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcc
Q 040876 250 SVNENNLT-------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSF 312 (343)
Q Consensus 250 ~l~~n~l~-------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l 312 (343)
++++|.++ ++.|++++|++++..|..+... +|++|++++|++++.+|.. +++|++|++++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 99999875 5669999999999888877777 9999999999999987765 67899999999999
Q ss_pred ccccCchhhccCCccc-cCceEecCCCcccc
Q 040876 313 LGSISHFWCYRSNETK-RLRALSLGDNYLQG 342 (343)
Q Consensus 313 ~~~~~~~l~~~l~~l~-~L~~L~ls~N~l~g 342 (343)
+. + |..+..++ +|++|++++|++.+
T Consensus 534 ~~-~----p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 534 ET-S----KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CC-E----ESCGGGSCTTCCEEECCSCCCCC
T ss_pred cc-c----CHhHhhhcccCcEEEccCCCccc
Confidence 84 3 44567776 59999999999875
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=1.5e-24 Score=211.32 Aligned_cols=230 Identities=19% Similarity=0.196 Sum_probs=110.6
Q ss_pred CccccceEeCCCC-----------CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC---
Q 040876 62 CCTWAGIVCDNVT-----------GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP--- 127 (343)
Q Consensus 62 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--- 127 (343)
.|.|.|+ |+... .+++.|++++ |.+++. .|..+.++++|++|++++|.
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~----------------n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~ 64 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF----------------NKITYI-GHGDLRACANLQVLILKSSRINT 64 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS----------------SCCCEE-CSSTTSSCTTCCEEECTTSCCCE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC----------------CccCcc-ChhhhhcCCcccEEECCCCCcCc
Confidence 4899998 86432 2345555554 344443 45567777777777777775
Q ss_pred -------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccc-ccchhccCCCCCC
Q 040876 128 -------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISG-HLTEQIGHFKNLD 198 (343)
Q Consensus 128 -------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 198 (343)
.+++|++|++++| +. +..|..++++ ++|++|++++|.+++ ..|..++++++|+
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~l~----------------~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNHLS----------------SLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCC----------------SCCHHHHTTC--TTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cChhhccccccCCEEECCCCccC----------------ccCHHHhccC--CCCcEEECCCCcccccchhhhhhccCCcc
Confidence 2334444444444 43 1223334444 444444444444443 2233444444444
Q ss_pred EEECcCCcccccCC-ccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcc-
Q 040876 199 TLDLGNNSIVGLVP-LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLT- 276 (343)
Q Consensus 199 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~- 276 (343)
+|++++|.+.+.+| ..++++++|++|++++|.+++.+|. .+..+++|++| +++.|.+.. +|..+
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L------------~l~~n~~~~-~~~~~~ 192 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-SLKSIRDIHHL------------TLHLSESAF-LLEIFA 192 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-TTTTCSEEEEE------------EEECSBSTT-HHHHHH
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChh-hhhccccCceE------------ecccCcccc-cchhhH
Confidence 44444444222222 2344444444444444444443443 44444444444 444444432 12211
Q ss_pred ccc-CCCeEeCcCCcccCcc----c--ccCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 277 NAT-QLWYLRLHSNNFSGPL----S--LISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 277 ~~~-~L~~L~Ls~N~l~~~~----~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
... +|++|++++|++++.. + ..+++|+.|++++|.+++..+..++..+..+++|+.+++++|.+.
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 222 5555555555555421 1 114455555555555555444444444444455555555555443
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.7e-23 Score=187.29 Aligned_cols=204 Identities=22% Similarity=0.170 Sum_probs=142.5
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGC 168 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l 168 (343)
.+.++. +|..+ .++|++|++++|. .+++|++|++++| +. +..|..+.++
T Consensus 20 ~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----------------~~~~~~~~~l 79 (285)
T 1ozn_A 20 QQGLQA--VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA----------------RIDAAAFTGL 79 (285)
T ss_dssp SSCCSS--CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----------------EECTTTTTTC
T ss_pred cCCccc--CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc----------------eeCHhhcCCc
Confidence 344554 66544 4689999999987 3455777777766 55 2335666666
Q ss_pred CCCCccEEEeecCc-cccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCC
Q 040876 169 VSKGLEILVLRSSS-ISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLS 247 (343)
Q Consensus 169 ~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~ 247 (343)
++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 80 --~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 80 --ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156 (285)
T ss_dssp --TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred --cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCcc
Confidence 777777777775 66544666777777777777777777665666677777777777777776 44433566667776
Q ss_pred eEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhcc
Q 040876 248 VFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYR 323 (343)
Q Consensus 248 ~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~ 323 (343)
+|++++ |++++..+..+... +|++|++++|.+++..|.. +++|++|++++|.+++.. +..
T Consensus 157 ~L~l~~------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 220 (285)
T 1ozn_A 157 HLFLHG------------NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP----TEA 220 (285)
T ss_dssp EEECCS------------SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC----HHH
T ss_pred EEECCC------------CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC----HHH
Confidence 666555 55555445445555 8999999999998876655 678999999999988743 244
Q ss_pred CCccccCceEecCCCcccc
Q 040876 324 SNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 324 l~~l~~L~~L~ls~N~l~g 342 (343)
+..+++|+.|++++|++++
T Consensus 221 ~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HTTCTTCCEEECCSSCEEC
T ss_pred cccCcccCEEeccCCCccC
Confidence 6778899999999998864
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=3.7e-23 Score=204.31 Aligned_cols=121 Identities=26% Similarity=0.328 Sum_probs=87.4
Q ss_pred cEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hccc
Q 040876 76 HIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQR 144 (343)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~ 144 (343)
.++.|||+++ ++++. .|..|.++++|++|+|++|. .+++|++|+|++| ++
T Consensus 53 ~~~~LdLs~N----------------~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-- 113 (635)
T 4g8a_A 53 STKNLDLSFN----------------PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-- 113 (635)
T ss_dssp TCCEEECTTS----------------CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred CCCEEEeeCC----------------CCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC--
Confidence 5677888764 56553 34568888888888888886 4677888888888 76
Q ss_pred ccccCCCccccCcccchh-hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccc-cCCccccCCCCCc
Q 040876 145 LSKCRTGAKSSQEISDIF-DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVG-LVPLSLNELSKLR 222 (343)
Q Consensus 145 l~~~~~~~~~~~~~~~ip-~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 222 (343)
.+| ..|.++ ++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|+
T Consensus 114 ---------------~l~~~~f~~L--~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 114 ---------------SLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp ---------------EECGGGGTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ---------------CCCHHHhcCC--CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 333 456777 777777777777776555567777777777777777754 3566677777777
Q ss_pred EEEccCccCc
Q 040876 223 ILHLSDNKLN 232 (343)
Q Consensus 223 ~L~l~~N~l~ 232 (343)
+|++++|+++
T Consensus 177 ~L~L~~N~l~ 186 (635)
T 4g8a_A 177 HLDLSSNKIQ 186 (635)
T ss_dssp EEECCSSCCC
T ss_pred hhcccCcccc
Confidence 7777777665
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=7.7e-24 Score=206.35 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=139.4
Q ss_pred chhhhh-hcCCCCCccEEEeecCccccccch---hccCCCCCCEEECcCCcccccCC--ccccCCCCCcEEEccCccCcc
Q 040876 160 DIFDIF-SGCVSKGLEILVLRSSSISGHLTE---QIGHFKNLDTLDLGNNSIVGLVP--LSLNELSKLRILHLSDNKLNG 233 (343)
Q Consensus 160 ~ip~~l-~~l~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~g 233 (343)
.+|..+ .++ ++|++|++++|.+++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 324 ~ip~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 324 LVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp CCCHHHHHHC--TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred cCCHHHHhcC--ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 356555 467 8899999999999877654 36788999999999999874422 45788999999999999998
Q ss_pred ccChHhhhcCCCCCeEEecCceee---------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc--CCCC
Q 040876 234 TLSEIHFVNLTKLSVFSVNENNLT---------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI--SSNL 302 (343)
Q Consensus 234 ~~p~~~~~~l~~L~~L~l~~n~l~---------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L 302 (343)
.+|. .+..+++|++|++++|.++ ++.|++++|++++.++ ...+|++|++++|+++. +|.. +++|
T Consensus 401 ~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~---~l~~L~~L~Ls~N~l~~-ip~~~~l~~L 475 (549)
T 2z81_A 401 PMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLKT-LPDASLFPVL 475 (549)
T ss_dssp CCCS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCCGGGCTTC
T ss_pred cCCh-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcc---cCChhcEEECCCCccCc-CCCcccCccC
Confidence 7887 7788899999999999873 7789999999987542 23389999999999985 4443 8899
Q ss_pred cEEEccCCccccccCchhhccCCccccCceEecCCCccccC
Q 040876 303 VYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 303 ~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g~ 343 (343)
++|++++|++++..| ..+..+++|+.|++++|+++|.
T Consensus 476 ~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 476 LVMKISRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CEEECCSSCCCCCCT----TGGGGCTTCCEEECCSSCBCCC
T ss_pred CEEecCCCccCCcCH----HHHhcCcccCEEEecCCCccCC
Confidence 999999999998654 4567899999999999999873
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.4e-23 Score=192.82 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=71.7
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhh-hhc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDI-FSG 167 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~-l~~ 167 (343)
+|.+++. .|..+..+++|++|++++|. .+++|++|++++| +. .+|.. +.+
T Consensus 78 ~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------~l~~~~~~~ 139 (390)
T 3o6n_A 78 DLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-----------------SLPRGIFHN 139 (390)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTT
T ss_pred CCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-----------------cCCHHHhcC
Confidence 6777764 45588999999999999987 4667899999988 76 45554 467
Q ss_pred CCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccccc
Q 040876 168 CVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 210 (343)
Q Consensus 168 l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 210 (343)
+ ++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 140 l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 140 T--PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp C--TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred C--CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 7 8888888888888877777788888888888888888743
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=213.51 Aligned_cols=249 Identities=19% Similarity=0.195 Sum_probs=153.1
Q ss_pred ccccceEeCCCCCcEEEEecCCCccccccccceeCCC-------------CCCCCCCCC-CccccCCCCCCEecCCCCC-
Q 040876 63 CTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPR-------------SMLVGKGPI-PSWLYRLTHLEQLSVADRP- 127 (343)
Q Consensus 63 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~-------------~n~~~~~~i-p~~l~~l~~L~~L~Ls~n~- 127 (343)
|.|..|-+ ...+++.||++++ .+.+..+.. +|.+.+. + |..++++++|++|+|++|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N-----~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFN-----YIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESC-----CCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCC
T ss_pred CCCCCCCC--CCCCcCEEECCCC-----cCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcC
Confidence 45666665 3567888888876 444433322 4444444 5 6778999999999999987
Q ss_pred ---------CCCCCcccccchh-hcccccccCCCccccCcccchhhh--hhcCCCCCccEEEeecCccccccc-hhccCC
Q 040876 128 ---------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDI--FSGCVSKGLEILVLRSSSISGHLT-EQIGHF 194 (343)
Q Consensus 128 ---------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~--l~~l~~~~L~~L~L~~n~l~~~~p-~~l~~l 194 (343)
.+++|++|++++| +.+ .+|.. +.++ ++|++|++++|.+++..+ ..++++
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~----------------~~~~~~~~~~L--~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSD----------------AVLKDGYFRNL--KALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSS----------------CCSTTCCCSSC--SSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCc----------------ccccCcccccc--CCCCEEECCCCcccccccchhHhhC
Confidence 5677899999988 763 33433 5566 666666666666665433 356666
Q ss_pred CCCCEEECcCCcccccCCccccCC--CCCcEEEccCccCccccChHhhhcCCC------CCeEEecCcee----------
Q 040876 195 KNLDTLDLGNNSIVGLVPLSLNEL--SKLRILHLSDNKLNGTLSEIHFVNLTK------LSVFSVNENNL---------- 256 (343)
Q Consensus 195 ~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~l~~N~l~g~~p~~~~~~l~~------L~~L~l~~n~l---------- 256 (343)
++|++|++++|.+++..|..+..+ ++|+.|++++|.+.+..|. .+..+++ |+.|++++|.+
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 666666666666665555555544 5555555555555544443 3333322 55555555421
Q ss_pred ----------------------------------------eEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcc
Q 040876 257 ----------------------------------------TLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPL 295 (343)
Q Consensus 257 ----------------------------------------~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~ 295 (343)
.++.|++++|.+.+..+..+... +|+.|++++|++++..
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 24456666666666555555555 6777777777766655
Q ss_pred ccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 296 SLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 296 ~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
|.. +++|++|++++|.+++..| ..+..+++|+.|++++|.+++
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYS----SNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCS----CSCSSCTTCCEEECCSCCCCC
T ss_pred hHHhcCCCCCCEEECCCCCCCccCH----HHhcCCCCCCEEECCCCCCCc
Confidence 543 5566777777776665432 445566667777777766643
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=8.3e-23 Score=204.16 Aligned_cols=235 Identities=19% Similarity=0.190 Sum_probs=130.7
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC--------------CCCCCcccccchh-hcccccc----c-CCCcc-cc-Cc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP--------------SLASREDQDLLSN-IRQRLSK----C-RTGAK-SS-QE 157 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------------~l~~L~~L~l~~n-l~~~l~~----~-~~~~~-~~-~~ 157 (343)
+|.+++. .|..+..+++|++|++++|. ..++|+.|++++| +.+.... + .+..+ +. ..
T Consensus 338 ~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 338 DNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp SCCBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 5677765 56667788888888888764 1135777777777 6532110 0 00000 00 00
Q ss_pred c-cchh-hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccc--ccCCccccCCCCCcEEEccCccCcc
Q 040876 158 I-SDIF-DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIV--GLVPLSLNELSKLRILHLSDNKLNG 233 (343)
Q Consensus 158 ~-~~ip-~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~l~g 233 (343)
+ +.+| ..+.++ ++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|+++
T Consensus 417 l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~- 493 (680)
T 1ziw_A 417 IGQELTGQEWRGL--ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA- 493 (680)
T ss_dssp CEEECCSGGGTTC--TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-
T ss_pred CccccCcccccCc--ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-
Confidence 0 1233 344444 55555555555555444445555555555555555543 345566666666666666666666
Q ss_pred ccChHhhhcCCCCCeEEecCceee--------------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCccc
Q 040876 234 TLSEIHFVNLTKLSVFSVNENNLT--------------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFS 292 (343)
Q Consensus 234 ~~p~~~~~~l~~L~~L~l~~n~l~--------------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~ 292 (343)
.+|...+..+++|++|++++|.++ ++.|++++|+++...+..+... +|++|++++|+++
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 344335666666777776666543 3456666666664333344444 6677777777666
Q ss_pred Cccccc---CCCCcEEEccCCccccccCchhhccCC-ccccCceEecCCCcccc
Q 040876 293 GPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSN-ETKRLRALSLGDNYLQG 342 (343)
Q Consensus 293 ~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~l~~L~~L~ls~N~l~g 342 (343)
+.++.. +++|+.|++++|++++..+. .+. .+++|+.+++++|++.+
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKK----VFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHH----HHHHHHTTCSEEECTTCCCCB
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChh----HhcccccccCEEEccCCCccc
Confidence 544433 45666777777766654332 222 45666777777776653
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=9.5e-23 Score=181.57 Aligned_cols=192 Identities=19% Similarity=0.156 Sum_probs=130.2
Q ss_pred CCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccc
Q 040876 116 THLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSIS 184 (343)
Q Consensus 116 ~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~ 184 (343)
++|++|++++|. .+++|++|++++| +. +..+..+.++ ++|++|++++|.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------~~~~~~~~~l--~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------------TIEDGAYQSL--SHLSTLILTGNPIQ 89 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC----------------EECTTTTTTC--TTCCEEECTTCCCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC----------------ccCHHHccCC--cCCCEEECCCCccC
Confidence 356666666665 3445666666666 55 2334467778 88889999888888
Q ss_pred cccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc-ccChHhhhcCCCCCeEEecCceeeEeEEec
Q 040876 185 GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG-TLSEIHFVNLTKLSVFSVNENNLTLKFLDL 263 (343)
Q Consensus 185 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g-~~p~~~~~~l~~L~~L~l~~n~l~l~~L~l 263 (343)
+..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|. .+..+++|++|++++|.++
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~------ 162 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ------ 162 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCC------
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCC------
Confidence 7777788888889999998888886666678888889999998888874 2566 7888888888777766543
Q ss_pred cCCcccccCCCccccc-CCC----eEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhccCCccccCceEecC
Q 040876 264 GENQIHGEMTNLTNAT-QLW----YLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLG 336 (343)
Q Consensus 264 s~n~l~~~~~~~~~~~-~L~----~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls 336 (343)
+..+..+... +|+ +|++++|.+++..+.. ..+|++|++++|.+++.. +..+..+++|+.|+++
T Consensus 163 ------~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 163 ------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP----DGIFDRLTSLQKIWLH 232 (276)
T ss_dssp ------EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC----TTTTTTCCSCCEEECC
T ss_pred ------cCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC----HhHhcccccccEEEcc
Confidence 3333333333 444 6677777766554443 335677777777766432 1334566677777777
Q ss_pred CCcccc
Q 040876 337 DNYLQG 342 (343)
Q Consensus 337 ~N~l~g 342 (343)
+|++++
T Consensus 233 ~N~~~c 238 (276)
T 2z62_A 233 TNPWDC 238 (276)
T ss_dssp SSCBCC
T ss_pred CCcccc
Confidence 776654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-23 Score=202.77 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=75.6
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhh-hhc
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDI-FSG 167 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~-l~~ 167 (343)
+|.+++. .|..++.+++|++|+|++|. .+++|++|++++| +. .+|.. +.+
T Consensus 84 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------~l~~~~~~~ 145 (597)
T 3oja_B 84 DLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-----------------SLPRGIFHN 145 (597)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------CCCTTTTTT
T ss_pred CCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-----------------CCCHHHhcc
Confidence 7788875 56689999999999999997 4677999999999 76 45544 577
Q ss_pred CCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccccc
Q 040876 168 CVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 210 (343)
Q Consensus 168 l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 210 (343)
+ ++|++|++++|.+++..|..++.+++|++|++++|.+++.
T Consensus 146 l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 146 T--PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp C--TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred C--CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 8 8899999999999887788888899999999999988754
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4.7e-23 Score=188.50 Aligned_cols=205 Identities=20% Similarity=0.196 Sum_probs=164.1
Q ss_pred CCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 108 IPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
+|..+. ++|++|++++|. .+++|++|++++| +. +..|..+.++ ++|++|
T Consensus 48 ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------------~~~~~~~~~l--~~L~~L 107 (332)
T 2ft3_A 48 VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS----------------KIHEKAFSPL--RKLQKL 107 (332)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----------------EECGGGSTTC--TTCCEE
T ss_pred cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC----------------ccCHhHhhCc--CCCCEE
Confidence 666553 688999999887 5667888999888 76 3557788888 899999
Q ss_pred EeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc--ccChHhhhcCCCCCeEEecCc
Q 040876 177 VLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG--TLSEIHFVNLTKLSVFSVNEN 254 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~~~~~l~~L~~L~l~~n 254 (343)
++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..|. .+..+ +|+.|++++|
T Consensus 108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSS
T ss_pred ECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCC
Confidence 99999988 5676655 789999999999986655668889999999999998862 3444 66666 8999999998
Q ss_pred eee---------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhh
Q 040876 255 NLT---------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWC 321 (343)
Q Consensus 255 ~l~---------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~ 321 (343)
.++ ++.|++++|.+++..+..+... +|++|++++|++++..+.. +++|++|++++|.++ .+ |
T Consensus 183 ~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l----p 257 (332)
T 2ft3_A 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV----P 257 (332)
T ss_dssp BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC----C
T ss_pred CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec----C
Confidence 874 6778999999988776666666 8999999999998876643 788999999999987 34 3
Q ss_pred ccCCccccCceEecCCCcccc
Q 040876 322 YRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 322 ~~l~~l~~L~~L~ls~N~l~g 342 (343)
..+..+++|+.|++++|+|++
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCB
T ss_pred hhhhcCccCCEEECCCCCCCc
Confidence 556788899999999998875
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=7.7e-23 Score=185.38 Aligned_cols=203 Identities=18% Similarity=0.163 Sum_probs=143.8
Q ss_pred CCCEecCCCCC-------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhh--hcCCCCCccEEEeec
Q 040876 117 HLEQLSVADRP-------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIF--SGCVSKGLEILVLRS 180 (343)
Q Consensus 117 ~L~~L~Ls~n~-------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l--~~l~~~~L~~L~L~~ 180 (343)
.++.+.+.++. .+++|++|++++| +. +..|..+ ..+ ++|++|++++
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----------------~~~~~~~~~~~~--~~L~~L~Ls~ 126 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT----------------GTMPPLPLEATG--LALSSLRLRN 126 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB----------------SCCCCCSSSCCC--BCCSSCEEES
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec----------------cchhhhhhhccC--CCCCEEEeec
Confidence 45666666654 2344777777777 65 3555555 666 7777778877
Q ss_pred Cccccccc----hhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccc--cC-hHhhhcCCCCCeEEecC
Q 040876 181 SSISGHLT----EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGT--LS-EIHFVNLTKLSVFSVNE 253 (343)
Q Consensus 181 n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~--~p-~~~~~~l~~L~~L~l~~ 253 (343)
|.+++..+ ..+..+++|++|++++|.+++..|..++.+++|++|++++|++.+. ++ ...+..+++|++|++++
T Consensus 127 n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 127 VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 77776444 3345677777888877777766667777777788888877776542 21 11235677777777777
Q ss_pred ceee---------------EeEEeccCCcccccCCCcccc----cCCCeEeCcCCcccCcccccCCCCcEEEccCCcccc
Q 040876 254 NNLT---------------LKFLDLGENQIHGEMTNLTNA----TQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLG 314 (343)
Q Consensus 254 n~l~---------------l~~L~ls~n~l~~~~~~~~~~----~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~ 314 (343)
|+++ ++.|++++|++++..|..+.. .+|++|++++|+++..+....++|++|++++|++++
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence 7764 456888888888876544433 389999999999995444447899999999999997
Q ss_pred ccCchhhccCCccccCceEecCCCccccC
Q 040876 315 SISHFWCYRSNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 315 ~~~~~l~~~l~~l~~L~~L~ls~N~l~g~ 343 (343)
. | .+..+++|+.|++++|+|+.+
T Consensus 287 ~-~-----~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 287 A-P-----QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp C-C-----CTTSCCCCSCEECSSTTTSCC
T ss_pred C-c-----hhhhCCCccEEECcCCCCCCC
Confidence 3 2 146789999999999999864
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.2e-24 Score=208.36 Aligned_cols=252 Identities=18% Similarity=0.193 Sum_probs=158.6
Q ss_pred CCCCCCCCCCccccceEe------CCCCCcEEEEecCCCccccccccceeCC----C-------CCCCCCCCCCccccCC
Q 040876 53 LASWNIGGDCCTWAGIVC------DNVTGHIIELNLRNPFTYYRRSRYKANP----R-------SMLVGKGPIPSWLYRL 115 (343)
Q Consensus 53 ~~~W~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~g~~~~----~-------~n~~~~~~ip~~l~~l 115 (343)
...|....+||.|+|..| .-....++.+++++. ++. .+|. . +|.++. +|. .+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n-----~L~-~lp~~l~~~L~~L~L~~N~l~~--lp~---~l 80 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES-----GLT-TLPDCLPAHITTLVIPDNNLTS--LPA---LP 80 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS-----CCS-CCCSCCCTTCSEEEECSCCCSC--CCC---CC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC-----CcC-ccChhhCCCCcEEEecCCCCCC--CCC---cC
Confidence 455766778899976421 111234788888876 332 2222 1 666664 565 56
Q ss_pred CCCCEecCCCCC------CCCCCcccccchh-hcccccc-cCCCc--cccCcccchhhhhhcCCCCCccEEEeecCcccc
Q 040876 116 THLEQLSVADRP------SLASREDQDLLSN-IRQRLSK-CRTGA--KSSQEISDIFDIFSGCVSKGLEILVLRSSSISG 185 (343)
Q Consensus 116 ~~L~~L~Ls~n~------~l~~L~~L~l~~n-l~~~l~~-~~~~~--~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~ 185 (343)
++|++|++++|. .+++|++|++++| +++.-.. .++.. +....+..+|.. + ++|++|++++|.+++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l--~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---P--PGLQELSVSDNQLAS 155 (622)
T ss_dssp TTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---C--TTCCEEECCSSCCSC
T ss_pred CCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---C--CCCCEEECcCCcCCC
Confidence 778888888877 4556777777777 5521000 00000 000111223321 2 445555555555542
Q ss_pred ccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee--------
Q 040876 186 HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT-------- 257 (343)
Q Consensus 186 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~-------- 257 (343)
+|. .+++|+.|++++|.++ .+| ..+++|+.|++++|.++ .+|. ..++|+.|++++|.++
T Consensus 156 -l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~~~~~ 222 (622)
T 3g06_A 156 -LPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPALPSG 222 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred -cCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccCCCCCC
Confidence 232 2244555555555555 233 23477888888888887 4664 2477888888888764
Q ss_pred EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCchhhccCCccccCceEecCC
Q 040876 258 LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGD 337 (343)
Q Consensus 258 l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~ 337 (343)
++.|++++|++++ +|. ...+|++|++++|+++. +|..+++|+.|++++|.++ .+| ..+.++++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp~--~l~~L~~L~Ls~N~L~~-lp~~~~~L~~L~Ls~N~L~-~lp----~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LPV--LPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLP----ESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCC-SCC----GGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CCC--CCCcCcEEECCCCCCCc-CCcccccCcEEeCCCCCCC-cCC----HHHhhccccCEEEecC
Confidence 6779999999886 442 12389999999999986 4447889999999999998 444 5677899999999999
Q ss_pred Ccccc
Q 040876 338 NYLQG 342 (343)
Q Consensus 338 N~l~g 342 (343)
|+|+|
T Consensus 294 N~l~~ 298 (622)
T 3g06_A 294 NPLSE 298 (622)
T ss_dssp CCCCH
T ss_pred CCCCC
Confidence 99986
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.5e-24 Score=194.49 Aligned_cols=206 Identities=22% Similarity=0.196 Sum_probs=167.9
Q ss_pred cccCCCCCCEecCCCCC-CCCC-----Ccccccchh-hcccccccCCCccccCcccchhhhhh-------cCCCCCccEE
Q 040876 111 WLYRLTHLEQLSVADRP-SLAS-----REDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFS-------GCVSKGLEIL 176 (343)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~-~l~~-----L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~-------~l~~~~L~~L 176 (343)
.++..++|++|++++|. ..+. ++.|++++| +.. ..+|..+. ++ ++|++|
T Consensus 38 ~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~---------------~~~~~~~~~~~~~~~~l--~~L~~L 100 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRA---------------ARIPSRILFGALRVLGI--SGLQEL 100 (312)
T ss_dssp EEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEE---------------EECBHHHHHHHHHHHTT--SCCCEE
T ss_pred EEccCCCceeEeecccccccHHHHHHHHhhcccccccccC---------------CCcCHHHHHHHHHhcCc--CCccEE
Confidence 35567789999998887 2222 788888888 642 35666665 68 999999
Q ss_pred EeecCccccccchhc--cCCCCCCEEECcCCcccccCCccccCC-----CCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 177 VLRSSSISGHLTEQI--GHFKNLDTLDLGNNSIVGLVPLSLNEL-----SKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++++|.+++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|. .++.+++|++|
T Consensus 101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L 178 (312)
T 1wwl_A 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTL 178 (312)
T ss_dssp EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEE
T ss_pred EccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEE
Confidence 999999999999886 8999999999999999977 8888877 9999999999999855445 89999999999
Q ss_pred EecCceee----------------EeEEeccCCcccc--cCC-Cccccc-CCCeEeCcCCcccCccccc----CCCCcEE
Q 040876 250 SVNENNLT----------------LKFLDLGENQIHG--EMT-NLTNAT-QLWYLRLHSNNFSGPLSLI----SSNLVYL 305 (343)
Q Consensus 250 ~l~~n~l~----------------l~~L~ls~n~l~~--~~~-~~~~~~-~L~~L~Ls~N~l~~~~~~~----~~~L~~L 305 (343)
++++|++. ++.|++++|++++ .++ ..+... +|++|++++|++++.+|.. +++|++|
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 99999842 6779999999984 222 233344 9999999999999976432 6899999
Q ss_pred EccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 306 DLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 306 ~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++++|.++ .+| ..+. ++|++|++++|+|++
T Consensus 259 ~Ls~N~l~-~ip----~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 259 NLSFTGLK-QVP----KGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp ECTTSCCS-SCC----SSCC--SEEEEEECCSSCCCS
T ss_pred ECCCCccC-hhh----hhcc--CCceEEECCCCCCCC
Confidence 99999998 455 3333 789999999999986
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=193.14 Aligned_cols=217 Identities=20% Similarity=0.171 Sum_probs=160.2
Q ss_pred CCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCC
Q 040876 102 LVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVS 170 (343)
Q Consensus 102 ~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~ 170 (343)
.++. +|..+. ++|++|++++|. .+++|++|++++| +. +..|..+.++
T Consensus 42 ~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----------------~~~~~~~~~l-- 99 (353)
T 2z80_A 42 SLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------------TIEEDSFSSL-- 99 (353)
T ss_dssp TCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----------------EECTTTTTTC--
T ss_pred Cccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC----------------ccCHhhcCCC--
Confidence 4443 777655 489999999997 4667888888888 76 3445678888
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCc--cccCCCCCcEEEccCcc-CccccChHhhhcCCCCC
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPL--SLNELSKLRILHLSDNK-LNGTLSEIHFVNLTKLS 247 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~l~~N~-l~g~~p~~~~~~l~~L~ 247 (343)
++|++|++++|++++..+..+.++++|++|++++|+++ .+|. .+..+++|++|++++|. ++ .++...+..+++|+
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCC
Confidence 88888898888888655555888888889999888888 4454 67888888888888884 54 55444778888888
Q ss_pred eEEecCceee------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc------CCCCcEEEcc
Q 040876 248 VFSVNENNLT------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI------SSNLVYLDLF 308 (343)
Q Consensus 248 ~L~l~~n~l~------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~------~~~L~~L~Ls 308 (343)
+|++++|.++ ++.|++++|.++...+..+... +|++|++++|.+++..+.. ...++.++++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 8888887764 5667888887754333333333 7888888888887644332 4567777888
Q ss_pred CCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 309 NNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 309 ~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++.+++..-..+|..+..+++|+.|++++|+|+.
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 8877764444567778889999999999999873
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.3e-22 Score=183.26 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=148.7
Q ss_pred CCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 108 IPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
+|..+. ++|++|++++|. .+++|++|++++| +.. .+.+|..+.++ ++|++|
T Consensus 22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~~~~~--~~L~~L 83 (306)
T 2z66_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--------------KGCCSQSDFGT--TSLKYL 83 (306)
T ss_dssp CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE--------------EEEEEHHHHSC--SCCCEE
T ss_pred CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc--------------ccCcccccccc--cccCEE
Confidence 666443 689999999987 4456777777777 541 12345666667 788888
Q ss_pred EeecCccccccchhccCCCCCCEEECcCCcccccCC-ccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCce
Q 040876 177 VLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVP-LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN 255 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~ 255 (343)
++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+. .+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc
Confidence 88888877 466667778888888888888775443 4677778888888888887755555 67777777777666654
Q ss_pred eeEeEEeccCCcccc-cCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccC
Q 040876 256 LTLKFLDLGENQIHG-EMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRL 330 (343)
Q Consensus 256 l~l~~L~ls~n~l~~-~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L 330 (343)
+++ .+|..+... +|++|++++|++++..|.. +++|++|++++|.+++..+ ..+..+++|
T Consensus 162 ------------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L 225 (306)
T 2z66_A 162 ------------FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSL 225 (306)
T ss_dssp ------------EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----GGGTTCTTC
T ss_pred ------------cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----hhccCcccC
Confidence 444 456666666 9999999999999876655 6899999999999987543 346789999
Q ss_pred ceEecCCCcccc
Q 040876 331 RALSLGDNYLQG 342 (343)
Q Consensus 331 ~~L~ls~N~l~g 342 (343)
+.|++++|++++
T Consensus 226 ~~L~L~~N~l~~ 237 (306)
T 2z66_A 226 QVLDYSLNHIMT 237 (306)
T ss_dssp CEEECTTSCCCB
T ss_pred CEeECCCCCCcc
Confidence 999999999986
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=4.6e-23 Score=184.46 Aligned_cols=189 Identities=21% Similarity=0.203 Sum_probs=154.2
Q ss_pred eCCCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccch-hh
Q 040876 96 ANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDI-FD 163 (343)
Q Consensus 96 ~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~i-p~ 163 (343)
+...+|.+++. .+..+.++++|++|++++|. .+++|++|++++| .. +.+ |.
T Consensus 37 L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l----------------~~~~~~ 99 (285)
T 1ozn_A 37 IFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL----------------RSVDPA 99 (285)
T ss_dssp EECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC----------------CCCCTT
T ss_pred EEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc----------------cccCHH
Confidence 33447888874 45679999999999999997 5677999999988 33 244 67
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+..+ ++|++|++++|.+++..|..+.++++|++|++++|.+++..+..++.+++|++|++++|+++ .+|...+..+
T Consensus 100 ~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l 176 (285)
T 1ozn_A 100 TFHGL--GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGL 176 (285)
T ss_dssp TTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTC
T ss_pred HhcCC--cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCc
Confidence 88889 99999999999999888888999999999999999999766667899999999999999998 5665468889
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccccc
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSI 316 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~ 316 (343)
++|+.|++++| .+++..|..+... +|++|++++|.+++..+.. +++|++|++++|.+....
T Consensus 177 ~~L~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 177 HSLDRLLLHQN------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cccCEEECCCC------------cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 99998877765 4455556666655 8999999999888866543 678889999999887543
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=5.9e-23 Score=186.78 Aligned_cols=195 Identities=23% Similarity=0.222 Sum_probs=129.3
Q ss_pred cEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC--------CCCCCcccccchh-hccccc
Q 040876 76 HIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLS 146 (343)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~ 146 (343)
+++.|++++ |.+++. .|..+.++++|++|++++|. .+++|++|++++| ++
T Consensus 35 ~L~~L~L~~----------------n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~---- 93 (317)
T 3o53_A 35 NVKELDLSG----------------NPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ---- 93 (317)
T ss_dssp GCSEEECTT----------------SCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE----
T ss_pred CCCEEECcC----------------CccCcC-CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc----
Confidence 567777776 466664 56789999999999999998 5778889999888 66
Q ss_pred ccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEc
Q 040876 147 KCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHL 226 (343)
Q Consensus 147 ~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 226 (343)
.++ .. ++|++|++++|.+++..+. .+++|++|++++|++++..|..++.+++|++|++
T Consensus 94 -------------~l~----~~--~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 94 -------------ELL----VG--PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp -------------EEE----EC--TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred -------------ccc----CC--CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 222 33 7888999999988865443 3677899999999998777778888899999999
Q ss_pred cCccCccccChHhhhcCCCCCeEEecCceee----------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccc
Q 040876 227 SDNKLNGTLSEIHFVNLTKLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLS 296 (343)
Q Consensus 227 ~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 296 (343)
++|.+++..+...+..+++|++|++++|.++ ++.|++++|++++..+......+|++|++++|++++..+
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 9999885555522346788888888887764 333444444444332221111144444444444443211
Q ss_pred cc--CCCCcEEEccCCccc
Q 040876 297 LI--SSNLVYLDLFNNSFL 313 (343)
Q Consensus 297 ~~--~~~L~~L~Ls~N~l~ 313 (343)
.. +++|+.|++++|.+.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TCCCCTTCCEEECTTCCCB
T ss_pred HhhcCCCCCEEEccCCCcc
Confidence 11 344444444444444
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=200.73 Aligned_cols=216 Identities=17% Similarity=0.196 Sum_probs=156.4
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC-------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP-------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSK 171 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~-------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~ 171 (343)
+|.+++ +|..+..+ +|++|++++|. .+++|+.|++++| +.+ .++. ..+ +
T Consensus 291 ~~~l~~--l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~----------------~~~~--~~~--~ 347 (570)
T 2z63_A 291 SVTIER--VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----------------AFSE--VDL--P 347 (570)
T ss_dssp SCEECS--CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC----------------BCCC--CBC--T
T ss_pred Cccchh--hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccc----------------cccc--ccC--C
Confidence 344443 67777777 77777777776 3556777777766 442 2222 455 7
Q ss_pred CccEEEeecCcccccc--chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 172 GLEILVLRSSSISGHL--TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
+|++|++++|.+++.. |..+..+++|++|++++|.+++. |..+..+++|++|++++|.+++..|...+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 7777777777777543 56677777777777777777643 33477777777777777777655443356677777777
Q ss_pred EecCceee------------EeEEeccCCccc-ccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcc
Q 040876 250 SVNENNLT------------LKFLDLGENQIH-GEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSF 312 (343)
Q Consensus 250 ~l~~n~l~------------l~~L~ls~n~l~-~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l 312 (343)
++++|.++ ++.|++++|.++ +.+|..+... +|++|++++|++++..|.. +++|++|++++|.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 77777654 556788888887 5677777777 9999999999999887765 68899999999999
Q ss_pred ccccCchhhccCCccccCceEecCCCccccC
Q 040876 313 LGSISHFWCYRSNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 313 ~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g~ 343 (343)
++..+ ..+..+++|+.|++++|+++|.
T Consensus 507 ~~~~~----~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 507 KSVPD----GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCH----HHhhcccCCcEEEecCCcccCC
Confidence 88643 5567899999999999999873
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.7e-22 Score=191.19 Aligned_cols=196 Identities=26% Similarity=0.268 Sum_probs=165.7
Q ss_pred CCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccccc
Q 040876 108 IPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHL 187 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~ 187 (343)
+|..+. +++++|+|++|. +. +..|+.+.++ ++|++|++++|.+++..
T Consensus 69 iP~~~~--~~l~~L~L~~n~-------------i~----------------~~~~~~~~~l--~~L~~L~Ls~n~i~~~~ 115 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENN-------------IQ----------------MIQADTFRHL--HHLEVLQLGRNSIRQIE 115 (452)
T ss_dssp CCSCCC--TTCSEEECCSSC-------------CC----------------EECTTTTTTC--TTCCEEECCSSCCCEEC
T ss_pred cCCCCC--CCccEEECcCCc-------------Cc----------------eECHHHcCCC--CCCCEEECCCCccCCcC
Confidence 555443 578899998886 33 3446788899 99999999999999888
Q ss_pred chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCce-e----------
Q 040876 188 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN-L---------- 256 (343)
Q Consensus 188 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~-l---------- 256 (343)
|..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|. +
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 889999999999999999999766667899999999999999998 6666588999999999999843 2
Q ss_pred --eEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCc
Q 040876 257 --TLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLR 331 (343)
Q Consensus 257 --~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~ 331 (343)
.++.|++++|++++. |......+|++|++++|++++..|.. +++|++|++++|.+++..+ ..+..+++|+
T Consensus 195 l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~ 269 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLV 269 (452)
T ss_dssp CTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCC
T ss_pred CCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH----HHhcCCCCCC
Confidence 278899999999854 55444449999999999999877765 7899999999999998654 5677899999
Q ss_pred eEecCCCcccc
Q 040876 332 ALSLGDNYLQG 342 (343)
Q Consensus 332 ~L~ls~N~l~g 342 (343)
.|++++|+|++
T Consensus 270 ~L~L~~N~l~~ 280 (452)
T 3zyi_A 270 ELNLAHNNLSS 280 (452)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcCCc
Confidence 99999999875
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.2e-23 Score=196.19 Aligned_cols=204 Identities=20% Similarity=0.186 Sum_probs=143.3
Q ss_pred cEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC--------CCCCCcccccchh-hccccc
Q 040876 76 HIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLS 146 (343)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~ 146 (343)
+++.|+++++ .+++. .|..++.+++|++|+|++|. .+++|++|++++| +.
T Consensus 35 ~L~~L~Ls~n----------------~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~---- 93 (487)
T 3oja_A 35 NVKELDLSGN----------------PLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ---- 93 (487)
T ss_dssp GCCEEECCSS----------------CCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEE----
T ss_pred CccEEEeeCC----------------cCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCC----
Confidence 6888888874 66664 67789999999999999998 5778999999998 76
Q ss_pred ccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEc
Q 040876 147 KCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHL 226 (343)
Q Consensus 147 ~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 226 (343)
.+| .. ++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++
T Consensus 94 -------------~l~----~~--~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 94 -------------ELL----VG--PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp -------------EEE----EC--TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred -------------CCC----CC--CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 233 23 7889999999999875554 4578999999999999888888889999999999
Q ss_pred cCccCccccChHhhh-cCCCCCeEEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc--CCCCc
Q 040876 227 SDNKLNGTLSEIHFV-NLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI--SSNLV 303 (343)
Q Consensus 227 ~~N~l~g~~p~~~~~-~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~ 303 (343)
++|.+++..|. .+. .+++|+.|++++|.++ +. +......+|++|+|++|.+++.+|.. +++|+
T Consensus 152 s~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~------------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 152 KLNEIDTVNFA-ELAASSDTLEHLNLQYNFIY------------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217 (487)
T ss_dssp TTSCCCEEEGG-GGGGGTTTCCEEECTTSCCC------------EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred CCCCCCCcChH-HHhhhCCcccEEecCCCccc------------cc-cccccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence 99999876776 554 7889999888887664 21 11112225555555555555544433 45555
Q ss_pred EEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 304 YLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 304 ~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
.|++++|.+++ + |..+..+++|+.|++++|+++
T Consensus 218 ~L~Ls~N~l~~-l----p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRNNKLVL-I----EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCE-E----CTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecCCcCcc-c----chhhccCCCCCEEEcCCCCCc
Confidence 55555555553 1 233444555555555555544
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.2e-22 Score=183.79 Aligned_cols=160 Identities=23% Similarity=0.332 Sum_probs=122.3
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
+..+ ++|++|++++|.+.+. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..++
T Consensus 173 ~~~l--~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~ 243 (347)
T 4fmz_A 173 IANL--TDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLS 243 (347)
T ss_dssp GGGC--TTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred hccC--CCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCC
Confidence 6677 8888888888888743 33 7778888888888888875433 778888888888888887 4443 67788
Q ss_pred CCCeEEecCceee----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCC
Q 040876 245 KLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNN 310 (343)
Q Consensus 245 ~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N 310 (343)
+|++|++++|.++ ++.|++++|++++. +. +... +|++|++++|++++..+.. +++|++|++++|
T Consensus 244 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 8888888888765 67788888888764 33 3444 8999999999998776654 788999999999
Q ss_pred ccccccCchhhccCCccccCceEecCCCccc
Q 040876 311 SFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 311 ~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
.+++..| +..+++|++|++++|.|+
T Consensus 322 ~l~~~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 322 HITDIRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCGG------GGGCTTCSEESSSCC---
T ss_pred ccccccC------hhhhhccceeehhhhccc
Confidence 9887532 567889999999999886
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.4e-21 Score=179.48 Aligned_cols=217 Identities=23% Similarity=0.264 Sum_probs=149.4
Q ss_pred ccCCCCCCEecCCCCC--------CCCCCcccccchh-hcccccccCCCc---c-ccCc-ccchhhhhhcCCCCCccEEE
Q 040876 112 LYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLSKCRTGA---K-SSQE-ISDIFDIFSGCVSKGLEILV 177 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~~~~~~~---~-~~~~-~~~ip~~l~~l~~~~L~~L~ 177 (343)
+..+++|++|++++|. .+++|++|++++| +.+.-....+.. + +.+. ....+..+..+ ++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l--~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM--TGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC--TTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhC--CCCcEEE
Confidence 6666666666666665 4455666666666 442110000000 0 0000 01222336777 8888888
Q ss_pred eecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee
Q 040876 178 LRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 178 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~ 257 (343)
+++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+++++++|.++ .++. +..+++|++|++++|.++
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccC
Confidence 88888875433 77888888888888888743 33 778888888888888887 3332 678889999999998875
Q ss_pred ----------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccc-cCCCCcEEEccCCccccccCchhhccCCc
Q 040876 258 ----------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSL-ISSNLVYLDLFNNSFLGSISHFWCYRSNE 326 (343)
Q Consensus 258 ----------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 326 (343)
++.|++++|.+++. +......+|++|++++|++++.... .+++|++|++++|.+++..+ ..+..
T Consensus 235 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~ 309 (347)
T 4fmz_A 235 DLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM----EVIGG 309 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGH----HHHHT
T ss_pred CCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcCh----hHhhc
Confidence 67799999988863 3333333999999999999875322 27899999999999987654 45567
Q ss_pred cccCceEecCCCcccc
Q 040876 327 TKRLRALSLGDNYLQG 342 (343)
Q Consensus 327 l~~L~~L~ls~N~l~g 342 (343)
+++|++|++++|++++
T Consensus 310 l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCSEEECCSSSCCC
T ss_pred cccCCEEEccCCcccc
Confidence 8999999999999876
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=3.9e-22 Score=177.62 Aligned_cols=198 Identities=23% Similarity=0.254 Sum_probs=160.6
Q ss_pred cEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hccc
Q 040876 76 HIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQR 144 (343)
Q Consensus 76 ~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~ 144 (343)
.++.|+++++ .+++. .+..+.++++|++|++++|. .+++|++|++++| +.
T Consensus 29 ~l~~L~ls~n----------------~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 89 (276)
T 2z62_A 29 STKNLDLSFN----------------PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-- 89 (276)
T ss_dssp TCCEEECTTC----------------CCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred CccEEECCCC----------------ccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--
Confidence 4677777764 55553 34478999999999999997 4677999999999 77
Q ss_pred ccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccc-cCCccccCCCCCcE
Q 040876 145 LSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVG-LVPLSLNELSKLRI 223 (343)
Q Consensus 145 l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~ 223 (343)
+..+..+.++ ++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..++.+++|++
T Consensus 90 --------------~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 90 --------------SLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp --------------EECTTTTTTC--TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred --------------ccChhhhcCC--ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 3455778899 999999999999997767689999999999999999986 36899999999999
Q ss_pred EEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc---CC
Q 040876 224 LHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI---SS 300 (343)
Q Consensus 224 L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~ 300 (343)
|++++|+++ .++...+..+++|+.+.+ .+++++|.+++..+..+...+|++|++++|++++.++.. ++
T Consensus 154 L~Ls~N~l~-~~~~~~~~~l~~L~~l~l--------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 154 LDLSSNKIQ-SIYCTDLRVLHQMPLLNL--------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp EECCSSCCC-EECGGGGHHHHTCTTCCE--------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred EECCCCCCC-cCCHHHhhhhhhccccce--------eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence 999999998 455447777777775433 266677777766666665559999999999999876654 78
Q ss_pred CCcEEEccCCccccccC
Q 040876 301 NLVYLDLFNNSFLGSIS 317 (343)
Q Consensus 301 ~L~~L~Ls~N~l~~~~~ 317 (343)
+|++|++++|.+++..+
T Consensus 225 ~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 225 SLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCEEECCSSCBCCCTT
T ss_pred cccEEEccCCcccccCC
Confidence 89999999999998664
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-21 Score=186.80 Aligned_cols=244 Identities=24% Similarity=0.305 Sum_probs=131.5
Q ss_pred CcEEEEecCCCccccccccce-----------eCCCCCCCCCCCCCccccCCCCCCEecCCCCC--------CCCCCccc
Q 040876 75 GHIIELNLRNPFTYYRRSRYK-----------ANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP--------SLASREDQ 135 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~-----------~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------~l~~L~~L 135 (343)
.+++.|+++++ .+.+. +...+|.+++ +++ ++++++|++|++++|. .+++|++|
T Consensus 68 ~~L~~L~Ls~n-----~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNN-----QLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSS-----CCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred cCCCEEECCCC-----ccCCchhhhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEE
Confidence 46778888876 33221 1122666665 444 8888888888888886 56678888
Q ss_pred ccchh-hcccccccCC---Ccc-ccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccccc
Q 040876 136 DLLSN-IRQRLSKCRT---GAK-SSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 210 (343)
Q Consensus 136 ~l~~n-l~~~l~~~~~---~~~-~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 210 (343)
++++| +.+.-.-..+ ..+ +...+..++ .+.++ ++|++|++++|.+++. + .+..+++|++|++++|.+++.
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l--~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLK-PLANL--TTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-GGTTC--TTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCC
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCch-hhccC--CCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccc
Confidence 88887 5532100000 000 000011111 14444 5555555555555431 1 244445555555555544433
Q ss_pred CC--------------------ccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee----------EeE
Q 040876 211 VP--------------------LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT----------LKF 260 (343)
Q Consensus 211 ~p--------------------~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~----------l~~ 260 (343)
.| ..+..+++|++|++++|.+++ ++. +..+++|+.|++++|.++ ++.
T Consensus 215 ~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 291 (466)
T 1o6v_A 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 291 (466)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCccccccCCCccCe
Confidence 22 234445555555555555542 221 445555555555555543 445
Q ss_pred EeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhhccCCccccCceEecCCC
Q 040876 261 LDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 261 L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
|++++|++++..+ +... +|++|++++|++++..|.. +++|++|++++|.+++. ..+..+++|+.|++++|
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHN 363 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc------hhhccCCCCCEEeCCCC
Confidence 6666666654333 2233 6666666666666655433 66677777777776653 24567778888888888
Q ss_pred cccc
Q 040876 339 YLQG 342 (343)
Q Consensus 339 ~l~g 342 (343)
+++|
T Consensus 364 ~l~~ 367 (466)
T 1o6v_A 364 QISD 367 (466)
T ss_dssp CCCB
T ss_pred ccCc
Confidence 7765
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.6e-22 Score=174.26 Aligned_cols=190 Identities=24% Similarity=0.285 Sum_probs=148.7
Q ss_pred CCCccccceEeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccch
Q 040876 60 GDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLS 139 (343)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~ 139 (343)
.+||.|.|++|.. ..+.+++++. .++. +|..+. +++++|++++|.
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~~----------------~l~~--~p~~~~--~~l~~L~L~~n~------------ 46 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQGK----------------SLDS--VPSGIP--ADTEKLDLQSTG------------ 46 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTTC----------------CCSS--CCSCCC--TTCCEEECTTSC------------
T ss_pred ccCCCCCceEcCC---CCeEEecCCC----------------Cccc--cCCCCC--CCCCEEEccCCC------------
Confidence 3688999999953 2345677764 3333 666554 578888888877
Q ss_pred hhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCC
Q 040876 140 NIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS 219 (343)
Q Consensus 140 nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 219 (343)
+. +..+..+.++ ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 47 -l~----------------~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 47 -LA----------------TLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp -CC----------------CCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred -cC----------------ccCHhHhcCc--ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC
Confidence 33 2345568888 9999999999999988888899999999999999999977777789999
Q ss_pred CCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc
Q 040876 220 KLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI 298 (343)
Q Consensus 220 ~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~ 298 (343)
+|++|++++|+++ .+|...+..+++|++|++++| ++++..+..+... +|++|+|++|++++..+..
T Consensus 108 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 108 QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN------------QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEEcCCCcCC-CcChhHhccCCcccEEECcCC------------cCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 9999999999998 566546788899888777664 4555555556555 9999999999999877654
Q ss_pred ---CCCCcEEEccCCcccccc
Q 040876 299 ---SSNLVYLDLFNNSFLGSI 316 (343)
Q Consensus 299 ---~~~L~~L~Ls~N~l~~~~ 316 (343)
+++|++|++++|.+.+..
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTTS
T ss_pred HhCCCCCCEEEeeCCceeCCc
Confidence 678999999999998763
No 61
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.3e-23 Score=196.19 Aligned_cols=228 Identities=18% Similarity=0.199 Sum_probs=172.6
Q ss_pred CCccccCCCCCCEecCCCCC--------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCC
Q 040876 108 IPSWLYRLTHLEQLSVADRP--------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKG 172 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~--------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~ 172 (343)
++..+..+++|++|+|++|. .+++|++|++++| +.. +.. ..+..+..+...+..+ ++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~-l~~-----~~~~~~~~l~~~l~~~--~~ 95 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR-VKD-----EIPEALRLLLQALLKC--PK 95 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS-CGG-----GSHHHHHHHHHHHTTC--TT
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc-ccc-----chhHHHHHHHHHHhhC--Cc
Confidence 67778889999999999987 4677899998886 321 000 0000112233344788 99
Q ss_pred ccEEEeecCcccc----ccchhccCCCCCCEEECcCCcccccCCcccc----CC---------CCCcEEEccCccCc-cc
Q 040876 173 LEILVLRSSSISG----HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLN----EL---------SKLRILHLSDNKLN-GT 234 (343)
Q Consensus 173 L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l---------~~L~~L~l~~N~l~-g~ 234 (343)
|++|+|++|.+++ .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ +.
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999997 5788889999999999999999755444443 33 89999999999997 34
Q ss_pred cCh--HhhhcCCCCCeEEecCceee-----------------EeEEeccCCccc----ccCCCccccc-CCCeEeCcCCc
Q 040876 235 LSE--IHFVNLTKLSVFSVNENNLT-----------------LKFLDLGENQIH----GEMTNLTNAT-QLWYLRLHSNN 290 (343)
Q Consensus 235 ~p~--~~~~~l~~L~~L~l~~n~l~-----------------l~~L~ls~n~l~----~~~~~~~~~~-~L~~L~Ls~N~ 290 (343)
++. ..+..+++|++|++++|.++ ++.|++++|.++ +.+|..+... +|++|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 542 25678899999999999875 667999999996 4566666665 99999999999
Q ss_pred ccCc----cccc-----CCCCcEEEccCCccccccCchhhccC-CccccCceEecCCCccccC
Q 040876 291 FSGP----LSLI-----SSNLVYLDLFNNSFLGSISHFWCYRS-NETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 291 l~~~----~~~~-----~~~L~~L~Ls~N~l~~~~~~~l~~~l-~~l~~L~~L~ls~N~l~g~ 343 (343)
+++. ++.. +++|++|+|++|.+++.....+|..+ .++++|++|++++|++++.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 9874 3332 68899999999999884333455555 5679999999999999874
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.1e-21 Score=185.77 Aligned_cols=161 Identities=29% Similarity=0.377 Sum_probs=136.2
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
++.+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..| +..+++|++|++++|.++ .++. +..++
T Consensus 217 ~~~l--~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~ 287 (466)
T 1o6v_A 217 LGIL--TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLT 287 (466)
T ss_dssp GGGC--TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCT
T ss_pred cccc--CCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCC
Confidence 5667 888888888888875 3 357889999999999999986544 889999999999999998 4443 77899
Q ss_pred CCCeEEecCceee----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCcc
Q 040876 245 KLSVFSVNENNLT----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSF 312 (343)
Q Consensus 245 ~L~~L~l~~n~l~----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l 312 (343)
+|+.|++++|.++ ++.|++++|++++..| +... +|++|++++|++++..... +++|++|++++|++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred ccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence 9999999999875 7789999999998766 3444 9999999999999863322 88999999999999
Q ss_pred ccccCchhhccCCccccCceEecCCCcccc
Q 040876 313 LGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 313 ~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++..| +..+++|+.|++++|++++
T Consensus 366 ~~~~~------~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 366 SDLTP------LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CBCGG------GTTCTTCCEEECCCEEEEC
T ss_pred Cccch------hhcCCCCCEEeccCCcccC
Confidence 88643 5789999999999999886
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=191.83 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=99.3
Q ss_pred CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcc
Q 040876 75 GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQ 143 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~ 143 (343)
.+++.|+++++ .+++. .+..+.++++|++|++++|. .+++|++|++++| +.
T Consensus 28 ~~l~~L~Ls~n----------------~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~- 89 (570)
T 2z63_A 28 FSTKNLDLSFN----------------PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ- 89 (570)
T ss_dssp SSCCEEECCSC----------------CCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-
T ss_pred ccccEEEccCC----------------ccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-
Confidence 45778888775 44443 44567788888888888876 4567888888877 65
Q ss_pred cccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccc-cCCccccCCCCCc
Q 040876 144 RLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVG-LVPLSLNELSKLR 222 (343)
Q Consensus 144 ~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 222 (343)
+..|..+.++ ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|+
T Consensus 90 ---------------~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 90 ---------------SLALGAFSGL--SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp ---------------EECTTTTTTC--TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred ---------------ccCHhhhcCc--cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 2334567777 777777777777775444457777777777777777765 3577777777777
Q ss_pred EEEccCccCccccChHhhhcCCCC----CeEEecCcee
Q 040876 223 ILHLSDNKLNGTLSEIHFVNLTKL----SVFSVNENNL 256 (343)
Q Consensus 223 ~L~l~~N~l~g~~p~~~~~~l~~L----~~L~l~~n~l 256 (343)
+|++++|.+++..+. .+..+++| +.+++++|.+
T Consensus 153 ~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 153 HLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp EEECTTSCCCEECGG-GGHHHHTCTTCCCEEECTTCCC
T ss_pred EEeCcCCccceecHH-HccchhccchhhhhcccCCCCc
Confidence 777777777633333 56666666 5666666654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=184.89 Aligned_cols=202 Identities=23% Similarity=0.256 Sum_probs=168.3
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEee
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLR 179 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~ 179 (343)
++.++. +|..+. +++++|+|++|. +. +..+..+.++ ++|++|+|+
T Consensus 52 ~~~l~~--iP~~~~--~~l~~L~L~~n~-------------i~----------------~~~~~~~~~l--~~L~~L~Ls 96 (440)
T 3zyj_A 52 RKNLRE--VPDGIS--TNTRLLNLHENQ-------------IQ----------------IIKVNSFKHL--RHLEILQLS 96 (440)
T ss_dssp SCCCSS--CCSCCC--TTCSEEECCSCC-------------CC----------------EECTTTTSSC--SSCCEEECC
T ss_pred CCCcCc--CCCCCC--CCCcEEEccCCc-------------CC----------------eeCHHHhhCC--CCCCEEECC
Confidence 344554 777665 678888888876 33 2344678889 999999999
Q ss_pred cCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCce-e--
Q 040876 180 SSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN-L-- 256 (343)
Q Consensus 180 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~-l-- 256 (343)
+|.+++..+..|.++++|++|++++|+++...+..+..+++|++|++++|.++ .++...|..+++|+.|++++|+ +
T Consensus 97 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~ 175 (440)
T 3zyj_A 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY 175 (440)
T ss_dssp SSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcce
Confidence 99999887889999999999999999999666667999999999999999998 6666588999999999999853 2
Q ss_pred ----------eEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhcc
Q 040876 257 ----------TLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYR 323 (343)
Q Consensus 257 ----------~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~ 323 (343)
.++.|++++|+++ .+|......+|++|+|++|++++..|.. +++|++|++++|.+++..+ ..
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 250 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER----NA 250 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT----TS
T ss_pred eCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh----hh
Confidence 2778999999998 4565444449999999999999877765 7899999999999998654 56
Q ss_pred CCccccCceEecCCCcccc
Q 040876 324 SNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 324 l~~l~~L~~L~ls~N~l~g 342 (343)
+..+++|+.|++++|+|++
T Consensus 251 ~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp STTCTTCCEEECTTSCCCC
T ss_pred hcCCCCCCEEECCCCCCCc
Confidence 7889999999999999875
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=2.2e-21 Score=185.07 Aligned_cols=159 Identities=23% Similarity=0.249 Sum_probs=91.8
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
++.+ ++|++|++++|++++ ++ ++.+++|++|++++|...+.+ .++.+++|++|++++|++++ +| +..++
T Consensus 123 ~~~l--~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~ 191 (457)
T 3bz5_A 123 VSQN--PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNK 191 (457)
T ss_dssp CTTC--TTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCT
T ss_pred CCCC--CcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCC
Confidence 4555 566666666666654 22 555666666666666444344 35566666666666666663 44 45566
Q ss_pred CCCeEEecCceee---------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEcc-------
Q 040876 245 KLSVFSVNENNLT---------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLF------- 308 (343)
Q Consensus 245 ~L~~L~l~~n~l~---------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls------- 308 (343)
+|+.|++++|.++ ++.|++++|++++ +| .....+|++|++++|++++..+..+++|+.|+++
T Consensus 192 ~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 192 LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEE
Confidence 6677776666653 5566777777765 34 2222267777777777766554444444444333
Q ss_pred ---CCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 309 ---NNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 309 ---~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+|.+.+.+ | ++.+++|+.|++++|.+.|
T Consensus 270 ~l~~n~~~~~~----~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 270 DLTHNTQLIYF----Q--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CCTTCTTCCEE----E--CTTCTTCCCCCCTTCTTCC
T ss_pred ECCCCccCCcc----c--ccccccCCEEECCCCcccc
Confidence 33333322 2 2456788888888887544
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=4.7e-21 Score=182.64 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCCCCCCCCCccccCCCCCCEecCCCCC------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCC
Q 040876 100 SMLVGKGPIPSWLYRLTHLEQLSVADRP------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKG 172 (343)
Q Consensus 100 ~n~~~~~~ip~~l~~l~~L~~L~Ls~n~------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~ 172 (343)
+|.+++ +| .++++++|++|++++|. ...+|++|++++| +.+ +| .++++ ++
T Consensus 140 ~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-----------------l~-~~~~l--~~ 196 (454)
T 1jl5_A 140 NNQLEK--LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-----------------LP-ELQNL--PF 196 (454)
T ss_dssp SSCCSS--CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-----------------CC-CCTTC--TT
T ss_pred CCCCCC--Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-----------------Cc-cccCC--CC
Confidence 677775 67 58889999999999887 3346888888888 663 33 24444 44
Q ss_pred --------------------ccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCc
Q 040876 173 --------------------LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN 232 (343)
Q Consensus 173 --------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 232 (343)
|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.. +++|++|++++|+++
T Consensus 197 L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 445555555554 3442 5555556666666665552 3322 244555555555544
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=4.2e-22 Score=177.22 Aligned_cols=136 Identities=23% Similarity=0.288 Sum_probs=74.8
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+..+ ++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.++ .+|...+..+
T Consensus 80 ~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 156 (272)
T 3rfs_A 80 ALKEL--TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKL 156 (272)
T ss_dssp GGTTC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred hhcCC--CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccC
Confidence 45555 66666666666666555555566666666666666666554445566666666666666665 3333245556
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccc
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~ 314 (343)
++|+.|++++|. +++..+..+... +|++|++++|++++.++.. +++|++|++++|.+.+
T Consensus 157 ~~L~~L~l~~n~------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 157 TNLTELDLSYNQ------------LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTCCEEECCSSC------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCCC------------cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 666665555433 333333333333 5555555555555544432 4455555555555543
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.3e-22 Score=189.19 Aligned_cols=216 Identities=17% Similarity=0.176 Sum_probs=118.4
Q ss_pred CcEEEEecCCCccccccccceeCCC-------------CCCCCCCCCCccccCCCCC-------------CEecCCCCC-
Q 040876 75 GHIIELNLRNPFTYYRRSRYKANPR-------------SMLVGKGPIPSWLYRLTHL-------------EQLSVADRP- 127 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~~~~~-------------~n~~~~~~ip~~l~~l~~L-------------~~L~Ls~n~- 127 (343)
.+++.++++++ .+ |++|.. +|.+.+. +|..++++++| ++|++++|.
T Consensus 11 ~~L~~L~l~~n-----~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 11 TFLQEPLRHSS-----NL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred ccchhhhcccC-----ch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 35666666665 45 566644 4455554 77777766654 677777665
Q ss_pred -----CCCCCcccccchh-hccccccc--CCCcc--ccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCC
Q 040876 128 -----SLASREDQDLLSN-IRQRLSKC--RTGAK--SSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNL 197 (343)
Q Consensus 128 -----~l~~L~~L~l~~n-l~~~l~~~--~~~~~--~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 197 (343)
..++|++|++++| +++. +.. .+..+ ....+..+|.. . ++|++|++++|++++ +| .++++++|
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l~~~---~--~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDL---P--PLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSC---C--TTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred ccCCCCcCCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcccCC---C--CCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 1234666676666 5431 100 00000 00011122211 1 467788888887775 66 47778888
Q ss_pred CEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee--------EeEEeccCCccc
Q 040876 198 DTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT--------LKFLDLGENQIH 269 (343)
Q Consensus 198 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~--------l~~L~ls~n~l~ 269 (343)
++|++++|++++ +|..+ ++|++|++++|++++ +| .+..+++|++|++++|.++ ++.|++++|.++
T Consensus 156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 888888887774 55433 477788888887773 55 3677788888888887764 566777777777
Q ss_pred ccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCcccc
Q 040876 270 GEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLG 314 (343)
Q Consensus 270 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~ 314 (343)
.+|......+|++|++++|++++ +|..+++|++|++++|.+++
T Consensus 229 -~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 229 -ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp -SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSC
T ss_pred -cccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccc
Confidence 55543322377777777777765 33344556666666665554
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.8e-21 Score=172.65 Aligned_cols=192 Identities=22% Similarity=0.185 Sum_probs=141.9
Q ss_pred ccCCCCCCEecCCCCC--C-----CCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcc
Q 040876 112 LYRLTHLEQLSVADRP--S-----LASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSI 183 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~--~-----l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l 183 (343)
+++++++++++++++. . .++++.|++++| +. +..|..+.++ ++|++|++++|.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~----------------~~~~~~~~~l--~~L~~L~L~~n~l 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLY----------------TFSLATLMPY--TRLTQLNLDRAEL 67 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCS----------------EEEGGGGTTC--TTCCEEECTTSCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCC----------------ccCHHHhhcC--CCCCEEECCCCcc
Confidence 5566667777776665 1 124666666666 65 3456678888 8899999999988
Q ss_pred ccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEec
Q 040876 184 SGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDL 263 (343)
Q Consensus 184 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~l 263 (343)
++ ++.. +.+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|...|..+++|++|++++|
T Consensus 68 ~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N--------- 134 (290)
T 1p9a_G 68 TK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN--------- 134 (290)
T ss_dssp CE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTS---------
T ss_pred Cc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCC---------
Confidence 85 3433 77888999999999888 77888888889999999999888 455437888888888776654
Q ss_pred cCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCc
Q 040876 264 GENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNY 339 (343)
Q Consensus 264 s~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~ 339 (343)
++++..+..+... +|+.|++++|++++..+.. +++|++|++++|.++. + |..+...++|+.+++++|+
T Consensus 135 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-i----p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 135 ---ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I----PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C----CTTTTTTCCCSEEECCSCC
T ss_pred ---CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-c----ChhhcccccCCeEEeCCCC
Confidence 4555555555555 8999999999998766543 6789999999999874 3 4556667789999999998
Q ss_pred ccc
Q 040876 340 LQG 342 (343)
Q Consensus 340 l~g 342 (343)
+..
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 753
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-22 Score=188.03 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=166.4
Q ss_pred CCCCCCCCCccccCCCCCCEecCCCCC--------------CCC-CCcccccchh-hcccccccCCCccccCcccchhhh
Q 040876 101 MLVGKGPIPSWLYRLTHLEQLSVADRP--------------SLA-SREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDI 164 (343)
Q Consensus 101 n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------------~l~-~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~ 164 (343)
|++++. +|..+...++|++|++++|. .++ +|++|++++| +.+ ..+..
T Consensus 8 n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~----------------~~~~~ 70 (362)
T 3goz_A 8 HPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF----------------KNSDE 70 (362)
T ss_dssp CTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG----------------SCHHH
T ss_pred ccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH----------------HHHHH
Confidence 466665 77777777789999999998 455 7999999998 762 33444
Q ss_pred hhc-----CCCCCccEEEeecCccccccchhcc----CC-CCCCEEECcCCcccccCCcccc----C-CCCCcEEEccCc
Q 040876 165 FSG-----CVSKGLEILVLRSSSISGHLTEQIG----HF-KNLDTLDLGNNSIVGLVPLSLN----E-LSKLRILHLSDN 229 (343)
Q Consensus 165 l~~-----l~~~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~~p~~l~----~-l~~L~~L~l~~N 229 (343)
+.. . ++|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+. . .++|++|++++|
T Consensus 71 l~~~l~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 71 LVQILAAIP--ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp HHHHHHTSC--TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred HHHHHhccC--CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 433 3 6899999999999877666544 44 8999999999999876665543 3 368999999999
Q ss_pred cCccc----cChHhhhcCC-CCCeEEecCceee-----------------EeEEeccCCccccc----CCCcccc-c-CC
Q 040876 230 KLNGT----LSEIHFVNLT-KLSVFSVNENNLT-----------------LKFLDLGENQIHGE----MTNLTNA-T-QL 281 (343)
Q Consensus 230 ~l~g~----~p~~~~~~l~-~L~~L~l~~n~l~-----------------l~~L~ls~n~l~~~----~~~~~~~-~-~L 281 (343)
.+++. ++. .+...+ +|++|++++|.++ ++.||+++|.+++. ++..+.. . +|
T Consensus 149 ~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 149 DLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp CGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred cCCHHHHHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 98743 333 345555 8999999999873 66799999999863 3333433 4 89
Q ss_pred CeEeCcCCcccCccc-------ccCCCCcEEEccCCcccccc---CchhhccCCccccCceEecCCCcccc
Q 040876 282 WYLRLHSNNFSGPLS-------LISSNLVYLDLFNNSFLGSI---SHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 282 ~~L~Ls~N~l~~~~~-------~~~~~L~~L~Ls~N~l~~~~---~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++|+|++|.+++..+ ..+++|++|++++|.+.+.. ...++..+..+++|+.||+++|++.+
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 999999999987554 23688999999999955433 23456677889999999999999875
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.5e-21 Score=181.83 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=123.6
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
++.+ ++|++|++++|...+.+ .+..+++|++|++++|++++ +| ++.+++|++|++++|++++ ++ +..++
T Consensus 144 l~~l--~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~ 212 (457)
T 3bz5_A 144 VSHN--TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-LD---LNQNI 212 (457)
T ss_dssp CTTC--TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-CC---CTTCT
T ss_pred cccC--CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-ec---cccCC
Confidence 6677 88899999888655555 37788889999999998885 45 7788889999999998874 32 66788
Q ss_pred CCCeEEecCceee---------EeEEeccCCcccccCCCccccc--------CCCeEeCcCCcccCccccc-CCCCcEEE
Q 040876 245 KLSVFSVNENNLT---------LKFLDLGENQIHGEMTNLTNAT--------QLWYLRLHSNNFSGPLSLI-SSNLVYLD 306 (343)
Q Consensus 245 ~L~~L~l~~n~l~---------l~~L~ls~n~l~~~~~~~~~~~--------~L~~L~Ls~N~l~~~~~~~-~~~L~~L~ 306 (343)
+|+.|++++|+++ ++.|++++|++++..+..+... +|+.|++++|.+.+.+|.. +++|+.|+
T Consensus 213 ~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 292 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCC
T ss_pred CCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEE
Confidence 8999999888875 6778889998887543322211 4566677777766666654 68888999
Q ss_pred ccCCccccccCchhhc----cCCccccCceEecCCCcccc
Q 040876 307 LFNNSFLGSISHFWCY----RSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 307 Ls~N~l~~~~~~~l~~----~l~~l~~L~~L~ls~N~l~g 342 (343)
+++|...+.+|...+. .+..+++|++|++++|+|+|
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 9998877766532111 25667888889999988876
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3e-21 Score=185.65 Aligned_cols=188 Identities=22% Similarity=0.203 Sum_probs=124.5
Q ss_pred CCccccCCC----CCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcc
Q 040876 108 IPSWLYRLT----HLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSI 183 (343)
Q Consensus 108 ip~~l~~l~----~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l 183 (343)
+|..+..+. +|++|+|++|. +. +..|..+..+ ++|++|+|++|.+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~-------------l~----------------~~~~~~~~~l--~~L~~L~Ls~N~l 70 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNP-------------LS----------------QISAADLAPF--TKLELLNLSSNVL 70 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSC-------------CC----------------CCCGGGGTTC--TTCCEEECTTSCC
T ss_pred hHHHHHHhcccCCCccEEEeeCCc-------------CC----------------CCCHHHHhCC--CCCCEEEeeCCCC
Confidence 666665554 79999998887 22 1233455555 5666666666665
Q ss_pred ccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee------
Q 040876 184 SGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT------ 257 (343)
Q Consensus 184 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~------ 257 (343)
++..| +..+++|++|++++|.+++. | ..++|++|++++|.+++..+. .+++|+.|++++|.++
T Consensus 71 ~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~ 139 (487)
T 3oja_A 71 YETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLD 139 (487)
T ss_dssp EEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBC
T ss_pred CCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchh
Confidence 54443 55556666666666655522 1 125556666666655532221 2455555666555543
Q ss_pred ------EeEEeccCCcccccCCCccc-cc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhhccCCccc
Q 040876 258 ------LKFLDLGENQIHGEMTNLTN-AT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRSNETK 328 (343)
Q Consensus 258 ------l~~L~ls~n~l~~~~~~~~~-~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~ 328 (343)
++.|++++|.+++.+|..+. .. +|++|+|++|.+++..+.. +++|++|+|++|.+++.. ..+..++
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~ 214 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-----PEFQSAA 214 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC-----GGGGGGT
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC-----HhHcCCC
Confidence 45567777888877766654 34 9999999999999875544 889999999999999743 3467889
Q ss_pred cCceEecCCCcccc
Q 040876 329 RLRALSLGDNYLQG 342 (343)
Q Consensus 329 ~L~~L~ls~N~l~g 342 (343)
+|+.|++++|.|++
T Consensus 215 ~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 215 GVTWISLRNNKLVL 228 (487)
T ss_dssp TCSEEECTTSCCCE
T ss_pred CccEEEecCCcCcc
Confidence 99999999999875
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.4e-22 Score=182.79 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=150.0
Q ss_pred CCCccccceEeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCC--CCCCEecCCCCC---------C
Q 040876 60 GDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRL--THLEQLSVADRP---------S 128 (343)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l--~~L~~L~Ls~n~---------~ 128 (343)
.-|..|.++.|+. ..++.+++++. .+. |..+..+ +++++|++++|. .
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~-----~~~---------------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 91 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGK-----NLH---------------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS 91 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTC-----BCC---------------HHHHHHHHHTTCSEEECTTCEECSCCCSCCC
T ss_pred HHHHHHHHHhcCc--hhheeeccccc-----cCC---------------HHHHHhhhhccceEEEcCCccccccchhhcc
Confidence 4456799888753 34677888765 111 2223333 444555554443 2
Q ss_pred CCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCC-c
Q 040876 129 LASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNN-S 206 (343)
Q Consensus 129 l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~ 206 (343)
+++|++|++++| +.+ ..+|..+..+ ++|++|++++|.+++..+..++++++|++|++++| .
T Consensus 92 ~~~L~~L~L~~~~l~~---------------~~~~~~~~~~--~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEV---------------STLHGILSQC--SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154 (336)
T ss_dssp CBCCCEEECTTCEECH---------------HHHHHHHTTB--CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS
T ss_pred CCCCCEEEccCCCcCH---------------HHHHHHHhhC--CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC
Confidence 344555555555 441 1267777777 78888888888777777777777888888888887 5
Q ss_pred cccc-CCccccCCCCCcEEEccCc-cCccc-cChHhhhcCC-CCCeEEecCce--ee-------------EeEEeccCCc
Q 040876 207 IVGL-VPLSLNELSKLRILHLSDN-KLNGT-LSEIHFVNLT-KLSVFSVNENN--LT-------------LKFLDLGENQ 267 (343)
Q Consensus 207 l~~~-~p~~l~~l~~L~~L~l~~N-~l~g~-~p~~~~~~l~-~L~~L~l~~n~--l~-------------l~~L~ls~n~ 267 (343)
+++. ++..+..+++|++|++++| .+++. ++. .+..++ +|++|++++|. ++ ++.|++++|.
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 6642 5556677788888888888 77643 444 567777 88888887773 32 5667777787
Q ss_pred -ccccCCCccccc-CCCeEeCcCCc-ccCccc---ccCCCCcEEEccCCccccccCchhhccCCcc-ccCceEecCCCcc
Q 040876 268 -IHGEMTNLTNAT-QLWYLRLHSNN-FSGPLS---LISSNLVYLDLFNNSFLGSISHFWCYRSNET-KRLRALSLGDNYL 340 (343)
Q Consensus 268 -l~~~~~~~~~~~-~L~~L~Ls~N~-l~~~~~---~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l-~~L~~L~ls~N~l 340 (343)
+++..+..+... +|++|++++|. +..... ..+++|++|++++| ++... +..+ ..++.|++++|++
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-------~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-------LQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-------HHHHHHHSTTSEESCCCS
T ss_pred cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-------HHHHHhhCcceEEecccC
Confidence 665555555555 89999999885 332211 12788999999988 44321 1222 3467777888888
Q ss_pred cc
Q 040876 341 QG 342 (343)
Q Consensus 341 ~g 342 (343)
+|
T Consensus 306 ~~ 307 (336)
T 2ast_B 306 TT 307 (336)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.1e-22 Score=191.97 Aligned_cols=232 Identities=20% Similarity=0.163 Sum_probs=156.7
Q ss_pred CCccccCCCCCCEecCCCCC---------------CCCCCcccccchh-hcccc--------cc-cCCCcc-cc-Ccc--
Q 040876 108 IPSWLYRLTHLEQLSVADRP---------------SLASREDQDLLSN-IRQRL--------SK-CRTGAK-SS-QEI-- 158 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~---------------~l~~L~~L~l~~n-l~~~l--------~~-~~~~~~-~~-~~~-- 158 (343)
+|..+.++++|++|++++|. ..++|++|++++| +++.- .. ..+..+ +. ..+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 67788899999999999987 1346899999888 65310 00 011000 00 001
Q ss_pred ---cchhhhhh-cCCCCCccEEEeecCccccc----cchhccCCCCCCEEECcCCcccccCC-----ccccCCCCCcEEE
Q 040876 159 ---SDIFDIFS-GCVSKGLEILVLRSSSISGH----LTEQIGHFKNLDTLDLGNNSIVGLVP-----LSLNELSKLRILH 225 (343)
Q Consensus 159 ---~~ip~~l~-~l~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~ 225 (343)
..+...+. .. ++|++|++++|.+++. ++..+..+++|++|++++|.+++... ..+..+++|++|+
T Consensus 185 ~~~~~l~~~l~~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 185 AGVRVLCQGLKDSP--CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHSC--CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCC--CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 11222221 13 4677777777777653 46666677788888888887764321 1122477888888
Q ss_pred ccCccCccc----cChHhhhcCCCCCeEEecCcee-----------------eEeEEeccCCccccc----CCCccccc-
Q 040876 226 LSDNKLNGT----LSEIHFVNLTKLSVFSVNENNL-----------------TLKFLDLGENQIHGE----MTNLTNAT- 279 (343)
Q Consensus 226 l~~N~l~g~----~p~~~~~~l~~L~~L~l~~n~l-----------------~l~~L~ls~n~l~~~----~~~~~~~~- 279 (343)
+++|.+++. ++. .+..+++|++|++++|.+ .++.|++++|.+++. ++..+...
T Consensus 263 L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 263 IWECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp CTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred CcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 888888743 555 567788888999888876 367788999888764 34444444
Q ss_pred CCCeEeCcCCcccCccccc--------CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 280 QLWYLRLHSNNFSGPLSLI--------SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 280 ~L~~L~Ls~N~l~~~~~~~--------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+|++|++++|.+++..+.. .++|++|++++|.+++.....++..+..+++|++|++++|+|++
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 8999999999988643321 45899999999999875444566777788999999999999875
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.9e-20 Score=165.29 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=133.2
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+
T Consensus 58 ~l~~l--~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l 132 (272)
T 3rfs_A 58 GIQYL--PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132 (272)
T ss_dssp TGGGC--TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred ccccC--CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccC
Confidence 46778 999999999999986 3 47899999999999999999777777899999999999999998 4554368889
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCch
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHF 319 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~ 319 (343)
++|++|++++| ++++..+..+... +|++|++++|++++..+.. +++|++|++++|.+++..+
T Consensus 133 ~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-- 198 (272)
T 3rfs_A 133 TNLTYLNLAHN------------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-- 198 (272)
T ss_dssp TTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred CCCCEEECCCC------------ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH--
Confidence 99998777664 4555556555555 9999999999999877654 7899999999999997543
Q ss_pred hhccCCccccCceEecCCCccccC
Q 040876 320 WCYRSNETKRLRALSLGDNYLQGE 343 (343)
Q Consensus 320 l~~~l~~l~~L~~L~ls~N~l~g~ 343 (343)
..+..+++|+.|++++|+++|.
T Consensus 199 --~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 199 --GVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp --TTTTTCTTCCEEECCSSCBCCC
T ss_pred --HHHhCCcCCCEEEccCCCcccc
Confidence 4567899999999999998863
No 76
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.3e-21 Score=186.34 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=125.7
Q ss_pred CCCCCCCCc-----cccce-EeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCCC
Q 040876 55 SWNIGGDCC-----TWAGI-VCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRPS 128 (343)
Q Consensus 55 ~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~ 128 (343)
+|..+.++| .|.|+ .|.. ++++.|+++++ .+++ +|..+. ++|++|++++|.
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n----------------~L~~--lp~~l~--~~L~~L~Ls~N~- 91 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRL----------------NLSS--LPDNLP--PQITVLEITQNA- 91 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS----------------CCSC--CCSCCC--TTCSEEECCSSC-
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCC----------------CCCc--cCHhHc--CCCCEEECcCCC-
Confidence 454455566 79999 7853 57999999885 4444 666553 789999999887
Q ss_pred CCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccc
Q 040876 129 LASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIV 208 (343)
Q Consensus 129 l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 208 (343)
+ ..+| ..+ ++|++|++++|.+++ +|. +.+ +|++|++++|.++
T Consensus 92 ------------l-----------------~~ip---~~l--~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 92 ------------L-----------------ISLP---ELP--ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp ------------C-----------------SCCC---CCC--TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS
T ss_pred ------------C-----------------cccc---ccc--CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC
Confidence 2 2455 334 778888888888875 666 554 7888888888887
Q ss_pred ccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcC
Q 040876 209 GLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHS 288 (343)
Q Consensus 209 ~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~ 288 (343)
+ +|. .+++|++|++++|.++ .+|. .+++|+.|++++|.+ ++ +|. +. .+|++|+|++
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L------------~~-lp~-l~-~~L~~L~Ls~ 189 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQL------------TF-LPE-LP-ESLEALDVST 189 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC------------SC-CCC-CC-TTCCEEECCS
T ss_pred C-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCC------------CC-cch-hh-CCCCEEECcC
Confidence 5 665 5677888888888887 3664 356666666655443 33 333 22 4666666666
Q ss_pred CcccCcccccCCCC-------cEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 289 NNFSGPLSLISSNL-------VYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 289 N~l~~~~~~~~~~L-------~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
|+++..++ ...+| +.|+|++|.|+. + |..+..+++|+.|++++|+|+|
T Consensus 190 N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-l----p~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 NLLESLPA-VPVRNHHSEETEIFFRCRENRITH-I----PENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCSSCCC-CC--------CCEEEECCSSCCCC-C----CGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCchhh-HHHhhhcccccceEEecCCCccee-c----CHHHhcCCCCCEEEeeCCcCCC
Confidence 66663322 33345 666666666653 2 2334446666666666666654
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=6.9e-21 Score=173.09 Aligned_cols=197 Identities=19% Similarity=0.177 Sum_probs=160.1
Q ss_pred ccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEe
Q 040876 110 SWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVL 178 (343)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L 178 (343)
..+..+++|++|++++|. .+++|++|++++| +. .+++ +..+ ++|++|++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~-~~~l--~~L~~L~L 87 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-----------------ETLD-LESL--STLRTLDL 87 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-----------------EEEE-ETTC--TTCCEEEC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-----------------cchh-hhhc--CCCCEEEC
Confidence 345567799999999998 5678999999999 76 2232 7788 99999999
Q ss_pred ecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee-
Q 040876 179 RSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT- 257 (343)
Q Consensus 179 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~- 257 (343)
++|.+++ ++ ..++|++|++++|.+++..+. .+++|++|++++|++++..+. .+..+++|++|++++|.++
T Consensus 88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCE
T ss_pred cCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCc
Confidence 9999885 33 348999999999999865443 367899999999999854444 7888999999999999875
Q ss_pred ------------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhcc
Q 040876 258 ------------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYR 323 (343)
Q Consensus 258 ------------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~ 323 (343)
++.|++++|.+++. +......+|++|++++|++++.++.. +++|++|++++|.+++ + |..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l----~~~ 232 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I----EKA 232 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E----CTT
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-h----hhH
Confidence 56799999999865 33333449999999999999866654 7899999999999985 3 456
Q ss_pred CCccccCceEecCCCccc
Q 040876 324 SNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 324 l~~l~~L~~L~ls~N~l~ 341 (343)
+..+++|+.|++++|+++
T Consensus 233 ~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCCTTCCEEECTTCCCB
T ss_pred hhcCCCCCEEEccCCCcc
Confidence 788999999999999987
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.2e-20 Score=170.86 Aligned_cols=149 Identities=23% Similarity=0.312 Sum_probs=94.8
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLT 244 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~ 244 (343)
+..+ ++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..++
T Consensus 81 ~~~l--~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~ 151 (308)
T 1h6u_A 81 LKNL--TKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQIT-NISP--LAGLT 151 (308)
T ss_dssp GTTC--CSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCT
T ss_pred HccC--CCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-cCcc--ccCCC
Confidence 6666 677777777777664 33 46667777777777777764 33 2666777777777777765 3332 55666
Q ss_pred CCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhhc
Q 040876 245 KLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCY 322 (343)
Q Consensus 245 ~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~ 322 (343)
+|+.|++++|. +++..+ +... +|+.|++++|++++..+.. +++|++|++++|.+++..
T Consensus 152 ~L~~L~l~~n~------------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~------ 211 (308)
T 1h6u_A 152 NLQYLSIGNAQ------------VSDLTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS------ 211 (308)
T ss_dssp TCCEEECCSSC------------CCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG------
T ss_pred CccEEEccCCc------------CCCChh--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc------
Confidence 66666665544 443222 3333 7777777777777655432 677777777777776532
Q ss_pred cCCccccCceEecCCCcccc
Q 040876 323 RSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 323 ~l~~l~~L~~L~ls~N~l~g 342 (343)
.+..+++|+.|++++|++++
T Consensus 212 ~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEEEEEEEEEC
T ss_pred cccCCCCCCEEEccCCeeec
Confidence 25667777777777777765
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=9.8e-20 Score=161.62 Aligned_cols=202 Identities=24% Similarity=0.304 Sum_probs=152.5
Q ss_pred CCCCCCCCCCC-c--cccceEeCCC---------CCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCC
Q 040876 52 RLASWNIGGDC-C--TWAGIVCDNV---------TGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLE 119 (343)
Q Consensus 52 ~~~~W~~~~~~-c--~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~ 119 (343)
..+.| .+..| | .|..|.|... ...++.|++++ |++++. .+..+.++++|+
T Consensus 3 ~~C~~-~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~----------------n~l~~~-~~~~~~~l~~L~ 64 (270)
T 2o6q_A 3 ALCKK-DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQS----------------NKLSSL-PSKAFHRLTKLR 64 (270)
T ss_dssp CCBGG-GTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCS----------------SCCSCC-CTTSSSSCTTCC
T ss_pred ccCCC-CCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcC----------------CCCCee-CHHHhcCCCCCC
Confidence 34567 34333 4 4778999642 12355666655 466653 445799999999
Q ss_pred EecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhh-hhhcCCCCCccEEEeecCccccccchhccCCCCCC
Q 040876 120 QLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFD-IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLD 198 (343)
Q Consensus 120 ~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~-~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 198 (343)
+|++++|. + ..+|. .+.++ ++|++|++++|.+++..+..+..+++|+
T Consensus 65 ~L~l~~n~-------------l-----------------~~i~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 65 LLYLNDNK-------------L-----------------QTLPAGIFKEL--KNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp EEECCSSC-------------C-----------------SCCCTTTTSSC--TTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred EEECCCCc-------------c-----------------CeeChhhhcCC--CCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 99999987 2 24444 35678 8999999999999976667788999999
Q ss_pred EEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcccc
Q 040876 199 TLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNA 278 (343)
Q Consensus 199 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~ 278 (343)
+|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++| ++++..+..+..
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~ 179 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN------------QLKRVPEGAFDK 179 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS------------CCSCCCTTTTTT
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCC------------cCcEeChhHhcc
Confidence 9999999999777777899999999999999998 566546888899988777665 444444555555
Q ss_pred c-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccccc
Q 040876 279 T-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSI 316 (343)
Q Consensus 279 ~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~ 316 (343)
. +|++|++++|++++..+.. +++|+.|++++|.+....
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 5 9999999999998766543 678999999999987654
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=3.9e-22 Score=190.11 Aligned_cols=220 Identities=17% Similarity=0.169 Sum_probs=139.4
Q ss_pred CCccccCCCCCCEecCCCCC-----------CCC----CCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCC
Q 040876 108 IPSWLYRLTHLEQLSVADRP-----------SLA----SREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSK 171 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~-----------~l~----~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~ 171 (343)
+|..+..+++|++|++++|. .+. +|++|++++| +.. .....+|..+..+ +
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~------------~~~~~l~~~l~~~--~ 113 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG------------AGCGVLSSTLRTL--P 113 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG------------GGHHHHHHHTTSC--T
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH------------HHHHHHHHHHccC--C
Confidence 45566667777777777766 233 4777777766 541 0012567777777 7
Q ss_pred CccEEEeecCccccccchhcc-----CCCCCCEEECcCCcccccC----CccccCCCCCcEEEccCccCccccChHhhh-
Q 040876 172 GLEILVLRSSSISGHLTEQIG-----HFKNLDTLDLGNNSIVGLV----PLSLNELSKLRILHLSDNKLNGTLSEIHFV- 241 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~- 241 (343)
+|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+++..+. .+.
T Consensus 114 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~ 192 (461)
T 1z7x_W 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR-VLCQ 192 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH-HHHH
T ss_pred ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH-HHHH
Confidence 888888888877754444332 2456888888888777533 44556677888888888877643222 222
Q ss_pred ----cCCCCCeEEecCceee----------------EeEEeccCCcccccC-----CCccccc-CCCeEeCcCCcccCc-
Q 040876 242 ----NLTKLSVFSVNENNLT----------------LKFLDLGENQIHGEM-----TNLTNAT-QLWYLRLHSNNFSGP- 294 (343)
Q Consensus 242 ----~l~~L~~L~l~~n~l~----------------l~~L~ls~n~l~~~~-----~~~~~~~-~L~~L~Ls~N~l~~~- 294 (343)
..++|++|++++|.++ ++.|++++|.+++.. +...... +|++|++++|.+++.
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 2557888888877664 556788887776531 1122223 788888888877753
Q ss_pred ---cccc---CCCCcEEEccCCccccccCchhhccCCc-cccCceEecCCCcccc
Q 040876 295 ---LSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNE-TKRLRALSLGDNYLQG 342 (343)
Q Consensus 295 ---~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-l~~L~~L~ls~N~l~g 342 (343)
++.. +++|++|++++|.+++..+..++..+.. .++|++|++++|.+++
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 3332 6778888888888776555445444332 3578888888887765
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.4e-20 Score=160.81 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=111.4
Q ss_pred chhh-hhhcCCCCCccEEEeec-CccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCc---EEEccCc-cCcc
Q 040876 160 DIFD-IFSGCVSKGLEILVLRS-SSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR---ILHLSDN-KLNG 233 (343)
Q Consensus 160 ~ip~-~l~~l~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~---~L~l~~N-~l~g 233 (343)
.+++ .+.++ ++|++|++++ |.+++..+..+.++++|++|++++|.+++ +|. +..+++|+ +|++++| .++
T Consensus 70 ~i~~~~f~~l--~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~- 144 (239)
T 2xwt_C 70 QLESHSFYNL--SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT- 144 (239)
T ss_dssp EECTTTEESC--TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-
T ss_pred eeCHhHcCCC--cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-
Confidence 4443 56777 7888888887 88886555677788888888888888874 665 77777777 8888888 776
Q ss_pred ccChHhhhcCCCCC-eEEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcCCc-ccCccccc---C-CCCcEEEc
Q 040876 234 TLSEIHFVNLTKLS-VFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNN-FSGPLSLI---S-SNLVYLDL 307 (343)
Q Consensus 234 ~~p~~~~~~l~~L~-~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~---~-~~L~~L~L 307 (343)
.+|...|..+++|+ .|++++| +++...+..+...+|++|++++|+ +++..+.. + ++|++|++
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n------------~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNN------------GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSC------------CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred hcCcccccchhcceeEEEcCCC------------CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 55554677777777 7666655 444222233333489999999995 88665544 5 78999999
Q ss_pred cCCccccccCchhhccCCccccCceEecCCCc
Q 040876 308 FNNSFLGSISHFWCYRSNETKRLRALSLGDNY 339 (343)
Q Consensus 308 s~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~ 339 (343)
++|.+++. | . ..+++|+.|+++++.
T Consensus 213 ~~N~l~~l-~----~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 213 SQTSVTAL-P----S--KGLEHLKELIARNTW 237 (239)
T ss_dssp TTCCCCCC-C----C--TTCTTCSEEECTTC-
T ss_pred CCCccccC-C----h--hHhccCceeeccCcc
Confidence 99999863 3 2 157789999998864
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=7.5e-21 Score=172.27 Aligned_cols=145 Identities=22% Similarity=0.261 Sum_probs=98.1
Q ss_pred hcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCccccc--CC--ccccCCCCCcEEEccCccCccccChH---
Q 040876 166 SGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL--VP--LSLNELSKLRILHLSDNKLNGTLSEI--- 238 (343)
Q Consensus 166 ~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p--~~l~~l~~L~~L~l~~N~l~g~~p~~--- 238 (343)
..+ ++|++|++++|.+++..|..++.+++|++|++++|++.+. ++ ..++.+++|++|++++|+++ .++..
T Consensus 142 ~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 218 (310)
T 4glp_A 142 WLK--PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA 218 (310)
T ss_dssp TBC--SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH
T ss_pred hhc--cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH
Confidence 345 6677777777777666666666777777777777765432 11 22356666777777777665 33221
Q ss_pred hhhcCCCCCeEEecCceee---------------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccC-cccccCCCC
Q 040876 239 HFVNLTKLSVFSVNENNLT---------------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSG-PLSLISSNL 302 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~---------------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~L 302 (343)
.+..+++|++|++++|.++ ++.|++++|+++ .+|..+. .+|++|++++|++++ +.+..+++|
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L 296 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEV 296 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCchhhhCCCc
Confidence 2455667777777776653 345777788888 5565443 499999999999998 455558999
Q ss_pred cEEEccCCccccc
Q 040876 303 VYLDLFNNSFLGS 315 (343)
Q Consensus 303 ~~L~Ls~N~l~~~ 315 (343)
++|++++|.+++.
T Consensus 297 ~~L~L~~N~l~~~ 309 (310)
T 4glp_A 297 DNLTLDGNPFLVP 309 (310)
T ss_dssp SCEECSSTTTSCC
T ss_pred cEEECcCCCCCCC
Confidence 9999999999763
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.2e-20 Score=160.36 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=143.2
Q ss_pred CCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhh-hhhcCCCCCccEEEeecCc-ccc
Q 040876 108 IPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFD-IFSGCVSKGLEILVLRSSS-ISG 185 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~-~l~~l~~~~L~~L~L~~n~-l~~ 185 (343)
+|. +. ++|++|++++|. ++ .+|. .+.++ ++|++|++++|. ++.
T Consensus 26 ip~-~~--~~l~~L~l~~n~-------------l~-----------------~i~~~~~~~l--~~L~~L~l~~n~~l~~ 70 (239)
T 2xwt_C 26 IPS-LP--PSTQTLKLIETH-------------LR-----------------TIPSHAFSNL--PNISRIYVSIDVTLQQ 70 (239)
T ss_dssp CCC-CC--TTCCEEEEESCC-------------CS-----------------EECTTTTTTC--TTCCEEEEECCSSCCE
T ss_pred cCC-CC--CcccEEEEeCCc-------------ce-----------------EECHHHccCC--CCCcEEeCCCCCCcce
Confidence 666 33 378888888876 33 4444 78888 999999999997 886
Q ss_pred ccchhccCCCCCCEEECcC-CcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEecc
Q 040876 186 HLTEQIGHFKNLDTLDLGN-NSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLG 264 (343)
Q Consensus 186 ~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls 264 (343)
..+..+.++++|++|++++ |++++..+..+..+++|++|++++|.++ .+|. +..+++|+. ++.|+++
T Consensus 71 i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~---------L~~L~l~ 138 (239)
T 2xwt_C 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDI---------FFILEIT 138 (239)
T ss_dssp ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCS---------EEEEEEE
T ss_pred eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc--ccccccccc---------ccEEECC
Confidence 6666899999999999999 9999766678999999999999999998 4775 677777772 1234445
Q ss_pred CC-cccccCCCccccc-CCC-eEeCcCCcccCccccc--CCCCcEEEccCCc-cccccCchhhccCCcc-ccCceEecCC
Q 040876 265 EN-QIHGEMTNLTNAT-QLW-YLRLHSNNFSGPLSLI--SSNLVYLDLFNNS-FLGSISHFWCYRSNET-KRLRALSLGD 337 (343)
Q Consensus 265 ~n-~l~~~~~~~~~~~-~L~-~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~l-~~L~~L~ls~ 337 (343)
+| ++++..+..+... +|+ +|++++|+++...+.. .++|++|++++|+ +++..+ ..+..+ ++|+.|++++
T Consensus 139 ~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~----~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK----DAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT----TTTTTCSBCCSEEECTT
T ss_pred CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH----HHhhccccCCcEEECCC
Confidence 56 6665555556656 999 9999999998544333 4679999999995 886433 456778 9999999999
Q ss_pred Ccccc
Q 040876 338 NYLQG 342 (343)
Q Consensus 338 N~l~g 342 (343)
|+|++
T Consensus 215 N~l~~ 219 (239)
T 2xwt_C 215 TSVTA 219 (239)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 99875
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2e-19 Score=161.46 Aligned_cols=171 Identities=22% Similarity=0.168 Sum_probs=125.5
Q ss_pred CCccccCCCCCCEecCCCCC----------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 108 IPSWLYRLTHLEQLSVADRP----------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~----------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
+|..+. +++++|++++|. .+++|++|++++| ++ .++.. ..+ ++|++|
T Consensus 25 ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------~~~~~-~~l--~~L~~L 82 (290)
T 1p9a_G 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----------------KLQVD-GTL--PVLGTL 82 (290)
T ss_dssp CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------------EEECC-SCC--TTCCEE
T ss_pred CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-----------------cccCC-CCC--CcCCEE
Confidence 454443 567777777776 4556777777777 65 33333 566 889999
Q ss_pred EeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCcee
Q 040876 177 VLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNL 256 (343)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l 256 (343)
++++|+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|...|..+++|+.|++++|
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N-- 158 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN-- 158 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS--
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC--
Confidence 99999988 67888888999999999999998666677888999999999999998 555546778888888777654
Q ss_pred eEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCcccc
Q 040876 257 TLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 257 ~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~ 314 (343)
++++..+..+... +|++|++++|+++..++.. ..+|+.+++++|.+..
T Consensus 159 ----------~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 ----------NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ----------CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ----------cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 4444444455544 8888888888888544433 5678888888888754
No 85
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=154.28 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=103.2
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
..+.++ ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .++...+..
T Consensus 46 ~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~ 122 (208)
T 2o6s_A 46 GVFDEL--TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDK 122 (208)
T ss_dssp TTTTTC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred hhhccc--ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhcc
Confidence 346677 88899999998888665566788889999999999888655556788888999999999887 455436777
Q ss_pred CCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCc
Q 040876 243 LTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISH 318 (343)
Q Consensus 243 l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~ 318 (343)
+++|++|++++| ++++..+..+... +|++|++++|.+.+. +++|++|+++.|.++|.+|.
T Consensus 123 l~~L~~L~l~~N------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 123 LTQLKDLRLYQN------------QLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CTTCCEEECCSS------------CCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHHHCTTTBBC
T ss_pred CCcCCEEECCCC------------ccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHHhCCceeec
Confidence 888888766654 4444444445545 888999998877764 34688888888888887763
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=2.5e-20 Score=172.45 Aligned_cols=197 Identities=18% Similarity=0.212 Sum_probs=152.1
Q ss_pred CCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCC-CccEEEeecCccccccchhccCC-----CCCCEEEC
Q 040876 130 ASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSK-GLEILVLRSSSISGHLTEQIGHF-----KNLDTLDL 202 (343)
Q Consensus 130 ~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L 202 (343)
.+|++|++++| +.+.- ...+.+.+.++ + +|++|++++|.+++..+..+..+ ++|++|++
T Consensus 22 ~~L~~L~Ls~n~l~~~~------------~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSIS------------TVELIQAFANT--PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCEEECTTSCGGGSC------------HHHHHHHHHTC--CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred CCceEEEccCCCCChHH------------HHHHHHHHHhC--CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 34999999999 76200 01223677788 8 89999999999998777777665 99999999
Q ss_pred cCCcccccCCccccC----C-CCCcEEEccCccCccccChHhhh----c-CCCCCeEEecCceee---------------
Q 040876 203 GNNSIVGLVPLSLNE----L-SKLRILHLSDNKLNGTLSEIHFV----N-LTKLSVFSVNENNLT--------------- 257 (343)
Q Consensus 203 s~N~l~~~~p~~l~~----l-~~L~~L~l~~N~l~g~~p~~~~~----~-l~~L~~L~l~~n~l~--------------- 257 (343)
++|.+++..+..++. + ++|++|++++|.+++. +...+. . .++|++|++++|.++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 999999777665444 4 8999999999999744 432433 3 369999999999875
Q ss_pred --EeEEeccCCcccccCCCccc-----c-cCCCeEeCcCCcccCcc----ccc----CCCCcEEEccCCccccccCchhh
Q 040876 258 --LKFLDLGENQIHGEMTNLTN-----A-TQLWYLRLHSNNFSGPL----SLI----SSNLVYLDLFNNSFLGSISHFWC 321 (343)
Q Consensus 258 --l~~L~ls~n~l~~~~~~~~~-----~-~~L~~L~Ls~N~l~~~~----~~~----~~~L~~L~Ls~N~l~~~~~~~l~ 321 (343)
++.|++++|++++..+..+. . .+|++|+|++|.+++.. +.. .++|++|++++|.+++..+..+.
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 67799999999876543222 2 38999999999998732 222 35899999999999987776777
Q ss_pred ccCCccccCceEecCCCccc
Q 040876 322 YRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 322 ~~l~~l~~L~~L~ls~N~l~ 341 (343)
..+..+++|+.|++++|.++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHT
T ss_pred HHHhcCCCccEEEeccCCcc
Confidence 77788999999999999843
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=3.3e-21 Score=193.67 Aligned_cols=252 Identities=17% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHhhhhCCC-CCCCCCCCC-CCCCCccccceEeCCCCCcEEEEecCCCccccccccce-------eCCC-
Q 040876 30 GCLESEREALLRFKQDLQD-PSNRLASWN-IGGDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYK-------ANPR- 99 (343)
Q Consensus 30 ~~~~~~~~~L~~~k~~~~~-~~~~~~~W~-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~-------~~~~- 99 (343)
...+.++++++++...... ....-..|. .....+.|.++.+.. .+++.+++.+. .+... +...
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n-----~~~~~~~~~l~~l~Ls~ 200 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFAN-----GKDEANQALLQHKKLSQ 200 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCC-----CCCcchhhHhhcCccCc
Confidence 3445678889988877632 122334564 345567899988854 67888888664 11110 0000
Q ss_pred ---------CCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCC
Q 040876 100 ---------SMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVS 170 (343)
Q Consensus 100 ---------~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~ 170 (343)
.|.+. . .|..+..++.|+.|+|++|. +. .+|..+.++
T Consensus 201 ~~i~~~~~~~n~~~-~-~~~~~~~l~~L~~L~Ls~n~-------------l~-----------------~l~~~~~~l-- 246 (727)
T 4b8c_D 201 YSIDEDDDIENRMV-M-PKDSKYDDQLWHALDLSNLQ-------------IF-----------------NISANIFKY-- 246 (727)
T ss_dssp -----------------------CCCCCCEEECTTSC-------------CS-----------------CCCGGGGGC--
T ss_pred ccccCcccccccee-c-ChhhhccCCCCcEEECCCCC-------------CC-----------------CCChhhcCC--
Confidence 12222 1 34445555666666665554 32 567677777
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..++.+++|++|+|++|.++ .+|. .|+.+++|+.|+
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~ 322 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLG 322 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEE
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEe
Confidence 88888888888888 77888888888888888888888 77888888888888888888886 7787 577888888766
Q ss_pred ecCceeeEeEEeccCCcccccCCCccccc--CCCeEeCcCCcccCcccccCCCCcEEEccCC----ccccccCchhhccC
Q 040876 251 VNENNLTLKFLDLGENQIHGEMTNLTNAT--QLWYLRLHSNNFSGPLSLISSNLVYLDLFNN----SFLGSISHFWCYRS 324 (343)
Q Consensus 251 l~~n~l~l~~L~ls~n~l~~~~~~~~~~~--~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N----~l~~~~~~~l~~~l 324 (343)
|++| .|++.+|..+... .+..++|++|.+++.+|.. |+.|+++.| ...|.++...+..+
T Consensus 323 L~~N------------~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---l~~l~l~~n~~~~~~~~~l~~~~~~~~ 387 (727)
T 4b8c_D 323 VEGN------------PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---RRFIEINTDGEPQREYDSLQQSTEHLA 387 (727)
T ss_dssp CTTS------------CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------------------------
T ss_pred CCCC------------ccCCCChHHHhhcchhhhHHhhccCcccCcCccc---cceeEeecccccccccCCccccccchh
Confidence 6654 4455555554433 2334667777777666543 445556655 23334444444444
Q ss_pred CccccCceEecCCCccc
Q 040876 325 NETKRLRALSLGDNYLQ 341 (343)
Q Consensus 325 ~~l~~L~~L~ls~N~l~ 341 (343)
..+..+....+++|.+.
T Consensus 388 ~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 388 TDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------CCC
T ss_pred hcccccceeeeeccccc
Confidence 55666666677777654
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=9.1e-19 Score=172.46 Aligned_cols=199 Identities=23% Similarity=0.215 Sum_probs=129.3
Q ss_pred eeCCCCCCCCCCCCCccccCCCCCCEecCCCCC------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhc
Q 040876 95 KANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSG 167 (343)
Q Consensus 95 ~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~ 167 (343)
.+...+|.++. +|..+. ++|++|++++|. .+++|++|++++| ++ .+|. .
T Consensus 44 ~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-----------------~lp~---~ 99 (622)
T 3g06_A 44 VLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-----------------SLPV---L 99 (622)
T ss_dssp EEECCSSCCSC--CCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-----------------CCCC---C
T ss_pred EEEecCCCcCc--cChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-----------------cCCC---C
Confidence 34455788884 888776 899999999998 4567999999999 76 3443 3
Q ss_pred CCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhh-------
Q 040876 168 CVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHF------- 240 (343)
Q Consensus 168 l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~------- 240 (343)
+ ++|++|++++|.+++ +|. .+++|++|++++|+++ .+|.. +++|++|++++|.++ .+|. .+
T Consensus 100 l--~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~-~~~~L~~L~ 167 (622)
T 3g06_A 100 P--PGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA-LPSELCKLW 167 (622)
T ss_dssp C--TTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC-CCTTCCEEE
T ss_pred C--CCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC-ccCCCCEEE
Confidence 3 566666666666653 333 3455555555555555 23432 245555555555554 2332 11
Q ss_pred ----------hcCCCCCeEEecCceee--------EeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCC
Q 040876 241 ----------VNLTKLSVFSVNENNLT--------LKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNL 302 (343)
Q Consensus 241 ----------~~l~~L~~L~l~~n~l~--------l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L 302 (343)
..+++|+.|++++|.++ ++.|++++|.++. +|.. ..+|++|++++|++++ +|..+++|
T Consensus 168 L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L 243 (622)
T 3g06_A 168 AYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLTS-LPVLPSEL 243 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccc-cCCC--CCCCCEEEccCCccCc-CCCCCCcC
Confidence 12366667777776654 4556777776663 3322 1378888888888887 45567888
Q ss_pred cEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 303 VYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 303 ~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
++|++++|.++. +| . .+++|+.|++++|+|+
T Consensus 244 ~~L~Ls~N~L~~-lp----~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 244 KELMVSGNRLTS-LP----M---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CEEECCSSCCSC-CC----C---CCTTCCEEECCSSCCC
T ss_pred cEEECCCCCCCc-CC----c---ccccCcEEeCCCCCCC
Confidence 888888888874 33 2 4578899999999876
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=6.6e-19 Score=159.39 Aligned_cols=180 Identities=24% Similarity=0.352 Sum_probs=142.4
Q ss_pred CcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCC--------CCCCCcccccchh-hcccc
Q 040876 75 GHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRL 145 (343)
Q Consensus 75 ~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l 145 (343)
.+++.+++++. .++. +| .+..+++|++|++++|. .+++|++|++++| +.
T Consensus 41 ~~L~~L~l~~~----------------~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~--- 98 (308)
T 1h6u_A 41 DGITTLSAFGT----------------GVTT--IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK--- 98 (308)
T ss_dssp HTCCEEECTTS----------------CCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS---
T ss_pred CCcCEEEeeCC----------------CccC--ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC---
Confidence 35778888875 4443 55 57889999999999987 5677999999988 76
Q ss_pred cccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEE
Q 040876 146 SKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILH 225 (343)
Q Consensus 146 ~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 225 (343)
.++ .+..+ ++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 99 --------------~~~-~~~~l--~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 99 --------------NVS-AIAGL--QSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp --------------CCG-GGTTC--TTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred --------------Cch-hhcCC--CCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 343 57888 999999999999996 443 89999999999999999854 33 88999999999
Q ss_pred ccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCc
Q 040876 226 LSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLV 303 (343)
Q Consensus 226 l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~ 303 (343)
+++|.++ .++. +..+++|+.|++++|.+ ++. +. +... +|++|++++|++++..+.. +++|+
T Consensus 158 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l------------~~~-~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~ 220 (308)
T 1h6u_A 158 IGNAQVS-DLTP--LANLSKLTTLKADDNKI------------SDI-SP-LASLPNLIEVHLKNNQISDVSPLANTSNLF 220 (308)
T ss_dssp CCSSCCC-CCGG--GTTCTTCCEEECCSSCC------------CCC-GG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCC
T ss_pred ccCCcCC-CChh--hcCCCCCCEEECCCCcc------------CcC-hh-hcCCCCCCEEEccCCccCccccccCCCCCC
Confidence 9999998 4554 77889999988877654 332 22 3334 8999999999988766533 78899
Q ss_pred EEEccCCcccc
Q 040876 304 YLDLFNNSFLG 314 (343)
Q Consensus 304 ~L~Ls~N~l~~ 314 (343)
+|++++|.+++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 99999998876
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.3e-18 Score=150.68 Aligned_cols=165 Identities=21% Similarity=0.241 Sum_probs=124.1
Q ss_pred CCCCCCCCccccceEeCCCCCcEEEEecCCCccccccccceeCCCCCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcc
Q 040876 55 SWNIGGDCCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPRSMLVGKGPIPSWLYRLTHLEQLSVADRPSLASRED 134 (343)
Q Consensus 55 ~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~ 134 (343)
.|..+...|.|.+|.|... .++. +|..+. ++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~----------------------------~l~~--ip~~~~--~~L~~L~Ls~n~------- 51 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK----------------------------RHAS--VPAGIP--TNAQILYLHDNQ------- 51 (229)
T ss_dssp CCCCTTCEEETTEEECTTS----------------------------CCSS--CCSCCC--TTCSEEECCSSC-------
T ss_pred ccCCCCCEEeCCEeEccCC----------------------------CcCc--cCCCCC--CCCCEEEcCCCc-------
Confidence 4547888999999999641 1111 555443 778888888876
Q ss_pred cccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCcc
Q 040876 135 QDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS 214 (343)
Q Consensus 135 L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 214 (343)
+. +..|..+.++ ++|++|++++|+++...+..+..+++|++|++++|++++..+..
T Consensus 52 ------i~----------------~~~~~~~~~l--~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 52 ------IT----------------KLEPGVFDSL--INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp ------CC----------------CCCTTTTTTC--TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ------cC----------------ccCHHHhhCc--cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 33 2446677888 89999999999998655566788999999999999998666666
Q ss_pred ccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccC
Q 040876 215 LNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSG 293 (343)
Q Consensus 215 l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~ 293 (343)
+..+++|++|++++|+++ .+|. .+..+++|++|++++| ++++..+..+... +|+.|++++|.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N------------~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQN------------QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCC------------cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 788999999999999998 7887 7788888888777654 4444444455555 88999999998886
Q ss_pred ccc
Q 040876 294 PLS 296 (343)
Q Consensus 294 ~~~ 296 (343)
..+
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 544
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.7e-20 Score=173.69 Aligned_cols=201 Identities=20% Similarity=0.147 Sum_probs=156.6
Q ss_pred CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecC---ccccccchhc-------cCCCC
Q 040876 128 SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSS---SISGHLTEQI-------GHFKN 196 (343)
Q Consensus 128 ~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n---~l~~~~p~~l-------~~l~~ 196 (343)
.+++|+.|++++| +.+.. ...++..+..+ ++|++|++++| ++++.+|..+ ..+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~------------~~~l~~~l~~~--~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEA------------ARWLSENIASK--KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HCSCCCEEECTTSEECHHH------------HHHHHHTTTTC--TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred cCCCccEEECCCCCCCHHH------------HHHHHHHHHhC--CCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 4567999999999 76200 01355567788 99999999996 4556666655 78999
Q ss_pred CCEEECcCCcccc----cCCccccCCCCCcEEEccCccCccccChH---hhhcC---------CCCCeEEecCceee---
Q 040876 197 LDTLDLGNNSIVG----LVPLSLNELSKLRILHLSDNKLNGTLSEI---HFVNL---------TKLSVFSVNENNLT--- 257 (343)
Q Consensus 197 L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~g~~p~~---~~~~l---------~~L~~L~l~~n~l~--- 257 (343)
|++|++++|.+++ .+|..+..+++|++|++++|.+++..+.. .+..+ ++|++|++++|.++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999987 47778899999999999999997433220 23334 89999999999874
Q ss_pred -------------EeEEeccCCcccc-----cCCCccccc-CCCeEeCcCCccc----Cccccc---CCCCcEEEccCCc
Q 040876 258 -------------LKFLDLGENQIHG-----EMTNLTNAT-QLWYLRLHSNNFS----GPLSLI---SSNLVYLDLFNNS 311 (343)
Q Consensus 258 -------------l~~L~ls~n~l~~-----~~~~~~~~~-~L~~L~Ls~N~l~----~~~~~~---~~~L~~L~Ls~N~ 311 (343)
++.|++++|+++. .++..+... +|++|+|++|.++ +.+|.. +++|++|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 6789999999983 344345555 9999999999996 444433 7899999999999
Q ss_pred cccccCchhhccC--CccccCceEecCCCcccc
Q 040876 312 FLGSISHFWCYRS--NETKRLRALSLGDNYLQG 342 (343)
Q Consensus 312 l~~~~~~~l~~~l--~~l~~L~~L~ls~N~l~g 342 (343)
+++.....++..+ +.+++|+.|++++|.|++
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9987655666766 448999999999999875
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.3e-18 Score=160.30 Aligned_cols=171 Identities=19% Similarity=0.166 Sum_probs=116.6
Q ss_pred chhh-hhhcCCCCCccE-EEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccC-ccCccccC
Q 040876 160 DIFD-IFSGCVSKGLEI-LVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSD-NKLNGTLS 236 (343)
Q Consensus 160 ~ip~-~l~~l~~~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~-N~l~g~~p 236 (343)
.+|. .|.++ +++++ +.++.|+++...|..+..+++|++|++++|+++...+..+....++..+++.+ +++. .++
T Consensus 69 ~i~~~~f~~L--~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~ 145 (350)
T 4ay9_X 69 VIEADVFSNL--PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIE 145 (350)
T ss_dssp EECTTSBCSC--TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EEC
T ss_pred ccChhHhhcc--hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-ccc
Confidence 3443 45556 66554 55666777766667777788888888888887755444555566677777755 4454 555
Q ss_pred hHhhhcCC-CCCeEEecCceee-----------EeEEeccC-CcccccCCCccccc-CCCeEeCcCCcccCcccccCCCC
Q 040876 237 EIHFVNLT-KLSVFSVNENNLT-----------LKFLDLGE-NQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLISSNL 302 (343)
Q Consensus 237 ~~~~~~l~-~L~~L~l~~n~l~-----------l~~L~ls~-n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~L 302 (343)
...|..+. .++.|++++|+++ ++.+++++ |.++...+..+... +|++||+++|+++..++..+.+|
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence 54555543 5777788777764 56677765 55554444556666 99999999999998777678889
Q ss_pred cEEEccCCccccccCchhhccCCccccCceEecCCC
Q 040876 303 VYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 303 ~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
+.|.+.++.--..+| .+.++++|+.++++++
T Consensus 226 ~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-----TLEKLVALMEASLTYP 256 (350)
T ss_dssp CEEECTTCTTCCCCC-----CTTTCCSCCEEECSCH
T ss_pred hHhhhccCCCcCcCC-----CchhCcChhhCcCCCC
Confidence 999887765433443 3678899999999875
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.4e-19 Score=165.40 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=161.5
Q ss_pred CCCEecCCCCC-------CC--CCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccc
Q 040876 117 HLEQLSVADRP-------SL--ASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGH 186 (343)
Q Consensus 117 ~L~~L~Ls~n~-------~l--~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~ 186 (343)
.++.++++++. .+ +.++.+++++| +.+ . +..+..+ ++|++|++++|.+++.
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~----------------~-~~~~~~~--~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ----------------P-LAEHFSP--FRVQHMDLSNSVIEVS 108 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS----------------C-CCSCCCC--BCCCEEECTTCEECHH
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccc----------------c-chhhccC--CCCCEEEccCCCcCHH
Confidence 47899999886 23 67888999888 662 3 3335677 9999999999999866
Q ss_pred -cchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCc-cCccc-cChHhhhcCCCCCeEEecCc-eee-----
Q 040876 187 -LTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDN-KLNGT-LSEIHFVNLTKLSVFSVNEN-NLT----- 257 (343)
Q Consensus 187 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N-~l~g~-~p~~~~~~l~~L~~L~l~~n-~l~----- 257 (343)
+|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++. .+..+++|++|++++| .++
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHH
Confidence 8888999999999999999999888889999999999999999 68753 555 6888999999999999 653
Q ss_pred ---------EeEEeccCC--ccc-ccCCCccccc-CCCeEeCcCCc-ccCccccc---CCCCcEEEccCCccccccCchh
Q 040876 258 ---------LKFLDLGEN--QIH-GEMTNLTNAT-QLWYLRLHSNN-FSGPLSLI---SSNLVYLDLFNNSFLGSISHFW 320 (343)
Q Consensus 258 ---------l~~L~ls~n--~l~-~~~~~~~~~~-~L~~L~Ls~N~-l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l 320 (343)
++.|++++| .++ +.++..+... +|++|++++|. +++..+.. +++|++|++++|. +..+..+
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~ 265 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETL 265 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHH
Confidence 678999999 555 3455555555 99999999999 66544433 7899999999996 2222222
Q ss_pred hccCCccccCceEecCCCcccc
Q 040876 321 CYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 321 ~~~l~~l~~L~~L~ls~N~l~g 342 (343)
..+.++++|+.|++++| ++.
T Consensus 266 -~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 266 -LELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp -GGGGGCTTCCEEECTTS-SCT
T ss_pred -HHHhcCCCCCEEeccCc-cCH
Confidence 35678999999999998 653
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=2.4e-18 Score=151.03 Aligned_cols=162 Identities=22% Similarity=0.222 Sum_probs=137.0
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|+++ .+|...
T Consensus 28 ~~p~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 102 (251)
T 3m19_A 28 SVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102 (251)
T ss_dssp SCCSCCC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTT
T ss_pred ccCCCCC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhH
Confidence 6666554 68999999999999888888999999999999999999888888999999999999999998 555547
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccc
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~ 315 (343)
+..+++|++|++++| ++++..+..+... +|++|+|++|++++..+.. +++|++|++++|.+++.
T Consensus 103 ~~~l~~L~~L~L~~N------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN------------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTTCTTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred hcccCCCCEEEcCCC------------cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 888999998777665 4555555555555 9999999999999877743 68999999999999975
Q ss_pred cCchhhccCCccccCceEecCCCcccc
Q 040876 316 ISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 316 ~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
.+ ..+..+++|+.|++++|++++
T Consensus 171 ~~----~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PH----GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CT----TTTTTCTTCCEEECCSCCBCT
T ss_pred CH----HHHhCCCCCCEEEeeCCceeC
Confidence 43 456789999999999999976
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-18 Score=148.74 Aligned_cols=155 Identities=26% Similarity=0.273 Sum_probs=124.1
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+. +++++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|...
T Consensus 21 ~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 95 (208)
T 2o6s_A 21 SVPTGIP----AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGV 95 (208)
T ss_dssp SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred CCCCCCC----CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhH
Confidence 5565442 78999999999999766677899999999999999999665666789999999999999998 566546
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccc
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~ 315 (343)
+..+++|++|++++| ++++..+..+... +|++|++++|++++..+.. +++|++|++++|.+.+.
T Consensus 96 ~~~l~~L~~L~L~~N------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 96 FDKLTQLKELALNTN------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TTTCTTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred hcCccCCCEEEcCCC------------cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 788999998877665 4555555555555 9999999999999876653 78999999999988764
Q ss_pred cCchhhccCCccccCceEecCCCcccc
Q 040876 316 ISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 316 ~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++.|+.|+++.|+++|
T Consensus 164 -----------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 164 -----------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp -----------TTTTHHHHHHHHHCTT
T ss_pred -----------CCCHHHHHHHHHhCCc
Confidence 3456777777777766
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.2e-18 Score=154.61 Aligned_cols=170 Identities=23% Similarity=0.265 Sum_probs=107.5
Q ss_pred ccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhc
Q 040876 112 LYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQI 191 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l 191 (343)
+..+++|++|++++|. +. .++ .+..+ ++|++|++++|++++..+ +
T Consensus 42 ~~~l~~L~~L~l~~~~-------------i~-----------------~~~-~~~~l--~~L~~L~L~~n~l~~~~~--l 86 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-------------IK-----------------SVQ-GIQYL--PNVTKLFLNGNKLTDIKP--L 86 (291)
T ss_dssp HHHHHTCCEEECTTSC-------------CC-----------------CCT-TGGGC--TTCCEEECCSSCCCCCGG--G
T ss_pred hhhcCcccEEEccCCC-------------cc-----------------cCh-hHhcC--CCCCEEEccCCccCCCcc--c
Confidence 4567788888888776 22 332 35566 777777777777775433 7
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCccccc
Q 040876 192 GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGE 271 (343)
Q Consensus 192 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~ 271 (343)
..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++ +.
T Consensus 87 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~------------~~ 149 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKIT------------DI 149 (291)
T ss_dssp TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCC------------CC
T ss_pred ccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCC------------cc
Confidence 777777777777777764 33 4777777777777777776 343 4666777777666665443 21
Q ss_pred CCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 272 MTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 272 ~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
+ .+... +|++|++++|++++..+.. +++|++|++++|.+++. + .+..+++|+.|++++|+++
T Consensus 150 -~-~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l-----~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 -T-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-----G-GGTTCTTCSEEEEEEEEEE
T ss_pred -h-hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC-----h-hhccCCCCCEEECcCCccc
Confidence 2 22223 6666777766666654422 56666677776666542 1 2456666667776666654
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=9.2e-18 Score=165.60 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=135.0
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCC-ccccCCCCCcEEEccCccCccccChH
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVP-LSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
..+..+..+ .+|+++++..+.+. ..+..+..+++|+.++++.+......+ ..+..+++++.++++.|.+.+..+.
T Consensus 388 ~~~~~~~~~--~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~- 463 (635)
T 4g8a_A 388 CCSQSDFGT--ISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG- 463 (635)
T ss_dssp ECCHHHHSC--SCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT-
T ss_pred ccccchhhh--hhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccccccc-
Confidence 445556666 77778887777766 345566777888888887777654443 3456777888888888888755555
Q ss_pred hhhcCCCCCeEEecCceee-------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCC
Q 040876 239 HFVNLTKLSVFSVNENNLT-------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSN 301 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~-------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~ 301 (343)
.+..++.++.|++++|.+. ++.|++++|++++..|..+... +|++|+|++|++++..|.. +++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 6777788888888887642 5678888999998888888777 9999999999999987764 689
Q ss_pred CcEEEccCCccccccCchhhccCCcc-ccCceEecCCCcccc
Q 040876 302 LVYLDLFNNSFLGSISHFWCYRSNET-KRLRALSLGDNYLQG 342 (343)
Q Consensus 302 L~~L~Ls~N~l~~~~~~~l~~~l~~l-~~L~~L~ls~N~l~g 342 (343)
|++|+|++|++++..| ..+..+ ++|+.|++++|+++.
T Consensus 544 L~~L~Ls~N~l~~~~~----~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKK----QELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCEEECTTSCCCBCCS----SCTTCCCTTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCCCCH----HHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999998765 455666 689999999999874
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1e-17 Score=164.61 Aligned_cols=149 Identities=25% Similarity=0.258 Sum_probs=80.0
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+..+ ++|++|+|++|.+++..| +..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .++ .+..+
T Consensus 60 ~l~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l 130 (605)
T 1m9s_A 60 GIQYL--PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN--GLVHL 130 (605)
T ss_dssp TGGGC--TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG--GGGGC
T ss_pred HHccC--CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc--cccCC
Confidence 35556 666677777666664333 6666667777777766663 23 5666666777777766665 333 35566
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccCchhh
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSISHFWC 321 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~~~l~ 321 (343)
++|+.|++++|.++ +. + .+..+ +|+.|+|++|.+++..|.. +++|+.|+|++|.+++.
T Consensus 131 ~~L~~L~Ls~N~l~------------~l-~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l------ 190 (605)
T 1m9s_A 131 PQLESLYLGNNKIT------------DI-T-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL------ 190 (605)
T ss_dssp TTCSEEECCSSCCC------------CC-G-GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC------
T ss_pred CccCEEECCCCccC------------Cc-h-hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC------
Confidence 66666666555443 11 1 12222 5555555555555443322 44555555555555431
Q ss_pred ccCCccccCceEecCCCccc
Q 040876 322 YRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 322 ~~l~~l~~L~~L~ls~N~l~ 341 (343)
..+..+++|+.|+|++|+++
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEE
T ss_pred hHHccCCCCCEEEccCCcCc
Confidence 12344455555555555444
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.5e-18 Score=158.05 Aligned_cols=162 Identities=25% Similarity=0.225 Sum_probs=128.8
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhcc-CCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG-HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
.+|..+. +.+++|+|++|++++..+..+. .+++|++|+|++|++++..+..+..+++|++|++++|+++ .++..
T Consensus 32 ~iP~~~~----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 106 (361)
T 2xot_A 32 NVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEF 106 (361)
T ss_dssp SCCSSCC----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred ccCccCC----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHH
Confidence 6676554 5689999999999977777777 8999999999999999777788999999999999999998 55554
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc------CCCCcEEEccCCc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI------SSNLVYLDLFNNS 311 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~------~~~L~~L~Ls~N~ 311 (343)
.|..+++|+.|++++|. |++..+..+... +|++|+|++|++++..+.. +++|+.|+|++|.
T Consensus 107 ~~~~l~~L~~L~L~~N~------------i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNH------------IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTTTCTTCCEEECCSSC------------CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred HhCCCcCCCEEECCCCc------------ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 78889999988777654 445556666666 9999999999999865543 6789999999999
Q ss_pred cccccCchhhccCCcccc--CceEecCCCcccc
Q 040876 312 FLGSISHFWCYRSNETKR--LRALSLGDNYLQG 342 (343)
Q Consensus 312 l~~~~~~~l~~~l~~l~~--L~~L~ls~N~l~g 342 (343)
|++..+ ..+..++. ++.|++++|++..
T Consensus 175 l~~l~~----~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPL----TDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCH----HHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCH----HHhhhccHhhcceEEecCCCccC
Confidence 986432 33445555 4889999998763
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=141.77 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=63.5
Q ss_pred CccEEEeecCccccccc-hhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 172 GLEILVLRSSSISGHLT-EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
.+++|++++|.+++..| ..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .++...|..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEEE
Confidence 34555555555554322 23455555555555555555444444555555555555555554 23322444555555444
Q ss_pred ecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccc
Q 040876 251 VNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 251 l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~ 315 (343)
+++ |++++..|..+... +|++|+|++|++++..|.. +++|++|++++|.+.+.
T Consensus 112 Ls~------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 112 LRS------------NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTT------------SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCC------------CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 433 33333334434333 5555555555555544433 34555555555555443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.2e-17 Score=141.04 Aligned_cols=139 Identities=23% Similarity=0.277 Sum_probs=95.2
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
..+|..+. +++++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..
T Consensus 24 ~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 98 (220)
T 2v9t_B 24 TEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98 (220)
T ss_dssp SSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred CcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHh
Confidence 45555443 56777777777777655556777777777777777777666777777777777777777776 56654
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~ 314 (343)
.|..+++|+.|++++ |++++..|..+... +|++|+|++|++++..+.. +++|++|++++|.+..
T Consensus 99 ~f~~l~~L~~L~L~~------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNA------------NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCS------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HccCCCCCCEEECCC------------CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 566677777665554 44445555555555 7777777777777765543 5667777777777754
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.6e-18 Score=149.77 Aligned_cols=152 Identities=24% Similarity=0.292 Sum_probs=109.0
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.++ .+..+ ++|++|++++|.++ .+| .+..+++|++|++++|.+++. |. +..+++|++|++++|+++ .+|.
T Consensus 33 ~~~-~~~~l--~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~-- 102 (263)
T 1xeu_A 33 DLV-SQKEL--SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNG-- 102 (263)
T ss_dssp SEE-CHHHH--TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTT--
T ss_pred ccc-chhhc--CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCc--
Confidence 444 46677 88999999999988 455 688899999999999999854 43 888999999999999997 4664
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccccC
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGSIS 317 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~~~ 317 (343)
+.. ++|+.|++++|.+ ++ ++. +... +|++|++++|++++..+.. +++|++|++++|.+++.
T Consensus 103 ~~~-~~L~~L~L~~N~l------------~~-~~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNEL------------RD-TDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCC-SSCCEEECCSSCC------------SB-SGG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--
T ss_pred ccc-CcccEEEccCCcc------------CC-Chh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--
Confidence 222 7777777666554 32 232 3333 7788888888777653222 67778888888877764
Q ss_pred chhhccCCccccCceEecCCCcccc
Q 040876 318 HFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 318 ~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
..+..+++|+.|++++|++++
T Consensus 166 ----~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 ----GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----TTSTTCCCCCEEEEEEEEEEC
T ss_pred ----HHhccCCCCCEEeCCCCcccC
Confidence 345677778888888777664
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.5e-17 Score=140.93 Aligned_cols=140 Identities=24% Similarity=0.240 Sum_probs=95.7
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
..+|..+. ++|++|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|++|++++|+++ .++..
T Consensus 32 ~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 106 (229)
T 3e6j_A 32 ASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSA 106 (229)
T ss_dssp SSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChh
Confidence 45665443 67778888888887766777777788888888888876444455677778888888888777 44443
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCcccc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~ 314 (343)
.+..+++|+.|++++|.+ + .+|..+... +|++|++++|++++..+.. +++|+.|++++|.+.+
T Consensus 107 ~~~~l~~L~~L~Ls~N~l------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKL------------T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECCSSCC------------C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred HhCcchhhCeEeccCCcc------------c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 566777777766665443 3 445445444 7888888888877655443 5677788888887765
Q ss_pred cc
Q 040876 315 SI 316 (343)
Q Consensus 315 ~~ 316 (343)
..
T Consensus 174 ~c 175 (229)
T 3e6j_A 174 EC 175 (229)
T ss_dssp TB
T ss_pred Cc
Confidence 43
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.8e-17 Score=142.60 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=105.6
Q ss_pred cEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecC
Q 040876 174 EILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNE 253 (343)
Q Consensus 174 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~ 253 (343)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|++++..|. .|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCC
Confidence 56777777777 5666554 5788888888888866666777888888888888888744455 777778777766665
Q ss_pred ceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCcccc
Q 040876 254 NNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKR 329 (343)
Q Consensus 254 n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~ 329 (343)
|. ++...+..+... +|++|+|++|++++..|.. +++|++|+|++|.+++..+ ..+..+++
T Consensus 90 N~------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~ 153 (220)
T 2v9t_B 90 NK------------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK----GTFSPLRA 153 (220)
T ss_dssp SC------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTT
T ss_pred Cc------------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH----HHHhCCCC
Confidence 44 443334444444 8888888888888766654 5678888888888876543 34567788
Q ss_pred CceEecCCCcccc
Q 040876 330 LRALSLGDNYLQG 342 (343)
Q Consensus 330 L~~L~ls~N~l~g 342 (343)
|+.|++++|+++.
T Consensus 154 L~~L~L~~N~~~c 166 (220)
T 2v9t_B 154 IQTMHLAQNPFIC 166 (220)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEeCCCCcCC
Confidence 8888888887753
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.1e-17 Score=141.28 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=120.9
Q ss_pred hcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCC
Q 040876 166 SGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTK 245 (343)
Q Consensus 166 ~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~ 245 (343)
..+ ++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+. .+..+++
T Consensus 41 ~~l--~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 41 AQM--NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTS 113 (197)
T ss_dssp HHH--HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTT
T ss_pred hhc--CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccCh-hhcCCCC
Confidence 556 88999999999999 566 6899999999999999776 335789999999999999999876676 7888999
Q ss_pred CCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCc-ccCccccc--CCCCcEEEccCCccccccCchhh
Q 040876 246 LSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNN-FSGPLSLI--SSNLVYLDLFNNSFLGSISHFWC 321 (343)
Q Consensus 246 L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~-l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~ 321 (343)
|++|++++| ++++..+..+... +|++|++++|. ++.. |.. +++|++|++++|.+++. +
T Consensus 114 L~~L~Ls~n------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~~-----~ 175 (197)
T 4ezg_A 114 LTLLDISHS------------AHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY-----R 175 (197)
T ss_dssp CCEEECCSS------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCCC-----T
T ss_pred CCEEEecCC------------ccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcCh-----H
Confidence 998777665 4555455555555 99999999998 5554 433 88999999999999873 2
Q ss_pred ccCCccccCceEecCCCcccc
Q 040876 322 YRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 322 ~~l~~l~~L~~L~ls~N~l~g 342 (343)
.+..+++|+.|++++|+|.+
T Consensus 176 -~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -TGGGCSSCCEEEECBC----
T ss_pred -HhccCCCCCEEEeeCcccCC
Confidence 46788999999999999976
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=141.96 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=87.0
Q ss_pred cEEEeecCccccccchhccCCCCCCEEECcCCcccccCC-ccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEec
Q 040876 174 EILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVP-LSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252 (343)
Q Consensus 174 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~ 252 (343)
+++++++|.++ .+|..+. ..+++|++++|.+++..| ..+..+++|++|++++|.+++ ++...|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECC
Confidence 45666666666 3555442 235666777776665533 235666667777777766663 333256666666665554
Q ss_pred CceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccc
Q 040876 253 ENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETK 328 (343)
Q Consensus 253 ~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~ 328 (343)
+ |++++..+..+... +|++|+|++|++++..|.. +++|++|+|++|.+++..| ..+..++
T Consensus 90 ~------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~ 153 (220)
T 2v70_A 90 S------------NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP----GAFDTLH 153 (220)
T ss_dssp S------------SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT----TTTTTCT
T ss_pred C------------CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH----HHhcCCC
Confidence 4 33344444444444 6667777777666655543 4566667777776665433 4455666
Q ss_pred cCceEecCCCcccc
Q 040876 329 RLRALSLGDNYLQG 342 (343)
Q Consensus 329 ~L~~L~ls~N~l~g 342 (343)
+|+.|++++|++++
T Consensus 154 ~L~~L~L~~N~l~c 167 (220)
T 2v70_A 154 SLSTLNLLANPFNC 167 (220)
T ss_dssp TCCEEECCSCCEEC
T ss_pred CCCEEEecCcCCcC
Confidence 66677777766654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=140.71 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=120.9
Q ss_pred cCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhcc
Q 040876 113 YRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG 192 (343)
Q Consensus 113 ~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~ 192 (343)
..+++|++|++++|. + ..+| .+..+ ++|++|++++|.++. +..+.
T Consensus 41 ~~l~~L~~L~l~~n~-------------i-----------------~~l~-~l~~l--~~L~~L~l~~n~~~~--~~~l~ 85 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-------------V-----------------TDLT-GIEYA--HNIKDLTINNIHATN--YNPIS 85 (197)
T ss_dssp HHHHTCCEEEEESSC-------------C-----------------SCCT-TGGGC--TTCSEEEEESCCCSC--CGGGT
T ss_pred hhcCCccEEeccCCC-------------c-----------------cChH-HHhcC--CCCCEEEccCCCCCc--chhhh
Confidence 566778888887776 2 2556 57888 999999999997763 34789
Q ss_pred CCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccC
Q 040876 193 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEM 272 (343)
Q Consensus 193 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~ 272 (343)
.+++|++|++++|.+++..|..++.+++|++|++++|.+++..|. .+..+++|++|++++|.+ ++ .+
T Consensus 86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~-----------i~-~~ 152 (197)
T 4ezg_A 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGA-----------IT-DI 152 (197)
T ss_dssp TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTB-----------CC-CC
T ss_pred cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCC-----------cc-cc
Confidence 999999999999999988888999999999999999999876676 788999999988877641 22 34
Q ss_pred CCcccccCCCeEeCcCCcccCccccc-CCCCcEEEccCCcccc
Q 040876 273 TNLTNATQLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 273 ~~~~~~~~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~ 314 (343)
|......+|++|++++|++++..+.. +++|++|++++|++.+
T Consensus 153 ~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred HhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 43333339999999999999854332 8999999999999865
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.1e-17 Score=150.08 Aligned_cols=160 Identities=25% Similarity=0.355 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEE
Q 040876 98 PRSMLVGKGPIPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILV 177 (343)
Q Consensus 98 ~~~n~~~~~~ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~ 177 (343)
..+|.+.. +| .+..+++|++|++++|. +. .++. +.++ ++|++|+
T Consensus 53 l~~~~i~~--~~-~~~~l~~L~~L~L~~n~-------------l~-----------------~~~~-l~~l--~~L~~L~ 96 (291)
T 1h6t_A 53 ANNSDIKS--VQ-GIQYLPNVTKLFLNGNK-------------LT-----------------DIKP-LANL--KNLGWLF 96 (291)
T ss_dssp CTTSCCCC--CT-TGGGCTTCCEEECCSSC-------------CC-----------------CCGG-GTTC--TTCCEEE
T ss_pred ccCCCccc--Ch-hHhcCCCCCEEEccCCc-------------cC-----------------CCcc-cccC--CCCCEEE
Confidence 34566665 54 48889999999999887 22 3444 7778 8899999
Q ss_pred eecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee
Q 040876 178 LRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 178 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~ 257 (343)
+++|.+++ +| .+..+++|++|++++|.+++. ..+..+++|++|++++|.++ .+ . .+..+++|+.|++++|.+
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~-~-~l~~l~~L~~L~L~~N~l- 168 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI-T-VLSRLTKLDTLSLEDNQI- 168 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CC-G-GGGGCTTCSEEECCSSCC-
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cc-h-hhccCCCCCEEEccCCcc-
Confidence 99998885 33 488889999999999988853 46888899999999999887 44 3 677888888877766544
Q ss_pred EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCcccc
Q 040876 258 LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 258 l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~ 314 (343)
++..+ +... +|++|++++|.+++..+.. +++|+.|++++|.++.
T Consensus 169 -----------~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 -----------SDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----------CCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred -----------ccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 33333 3333 8888888888887643322 6788888888888765
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=2.7e-17 Score=151.38 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=101.3
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCc-cccCCCCCcE-EEccCccCccccCh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPL-SLNELSKLRI-LHLSDNKLNGTLSE 237 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~-L~l~~N~l~g~~p~ 237 (343)
.+|..+. +++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.+..|+++ .++.
T Consensus 23 ~iP~~l~----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~ 97 (350)
T 4ay9_X 23 EIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP 97 (350)
T ss_dssp SCCTTCC----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECT
T ss_pred ccCcCcC----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCc
Confidence 5565542 5677777777777743334567777777777777776655553 4566666554 445556676 4443
Q ss_pred HhhhcCCCCCeEEecCceee------------EeEEeccC-CcccccCCCccccc--CCCeEeCcCCcccCccccc--CC
Q 040876 238 IHFVNLTKLSVFSVNENNLT------------LKFLDLGE-NQIHGEMTNLTNAT--QLWYLRLHSNNFSGPLSLI--SS 300 (343)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~------------l~~L~ls~-n~l~~~~~~~~~~~--~L~~L~Ls~N~l~~~~~~~--~~ 300 (343)
..|..+++|++|++++|+++ +..+++.+ +++....+..+... .++.|++++|+++...+.. ..
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 36677777777777777653 23355543 34443333333332 5666777777776544433 34
Q ss_pred CCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 301 NLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 301 ~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
+|+.+++++|..-+.+| +..+..+++|++||+++|+|+
T Consensus 178 ~L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELP---NDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSCCC
T ss_pred chhHHhhccCCcccCCC---HHHhccCcccchhhcCCCCcC
Confidence 56666666433223333 234566677777777777665
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=6.3e-17 Score=149.56 Aligned_cols=136 Identities=22% Similarity=0.198 Sum_probs=98.8
Q ss_pred hhh-cCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 164 IFS-GCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 164 ~l~-~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
.+. ++ ++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|. .|..
T Consensus 58 ~~~~~l--~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~ 134 (361)
T 2xot_A 58 WTPTRL--TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN-AFED 134 (361)
T ss_dssp SSSSCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTT
T ss_pred hhhhcc--cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH-HhCC
Confidence 344 67 8888888888888876667788888888889888888866666788888888888888888744444 7888
Q ss_pred CCCCCeEEecCceeeEeEEeccCCcccccCCCcc---ccc-CCCeEeCcCCcccCccccc---CCC--CcEEEccCCccc
Q 040876 243 LTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLT---NAT-QLWYLRLHSNNFSGPLSLI---SSN--LVYLDLFNNSFL 313 (343)
Q Consensus 243 l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~---~~~-~L~~L~Ls~N~l~~~~~~~---~~~--L~~L~Ls~N~l~ 313 (343)
+++|+.|++++|.+ ++..+..+ ... +|+.|+|++|++++..+.. ++. ++.|+|++|.+.
T Consensus 135 l~~L~~L~L~~N~l------------~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 135 MAQLQKLYLSQNQI------------SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTCCEEECCSSCC------------CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cccCCEEECCCCcC------------CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88888877776554 33222222 223 8888888888888655433 343 367888888876
Q ss_pred c
Q 040876 314 G 314 (343)
Q Consensus 314 ~ 314 (343)
.
T Consensus 203 C 203 (361)
T 2xot_A 203 C 203 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1e-16 Score=157.49 Aligned_cols=163 Identities=27% Similarity=0.363 Sum_probs=118.4
Q ss_pred ccCCCCCCEecCCCCC--------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCc
Q 040876 112 LYRLTHLEQLSVADRP--------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSS 182 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~--------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~ 182 (343)
+..+++|+.|++++|. .+++|+.|++++| +. .++. +..+ ++|++|+|++|.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~-----------------~~~~-l~~l--~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-----------------DIKP-LTNL--KNLGWLFLDENK 98 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCC-----------------CCGG-GGGC--TTCCEEECCSSC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCC-----------------CChh-hccC--CCCCEEECcCCC
Confidence 3455566666666655 3445666666666 55 3444 7888 999999999999
Q ss_pred cccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEe
Q 040876 183 ISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLD 262 (343)
Q Consensus 183 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ 262 (343)
+++ +| .+..+++|++|+|++|.+++ + +.+..+++|+.|+|++|.+++ + . .+..+++|+.|++++|.+
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l------ 165 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQI------ 165 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-G-GGGSCTTCSEEECCSSCC------
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-h-hhcccCCCCEEECcCCcC------
Confidence 985 33 68899999999999999985 3 468899999999999999984 4 3 678889988877776544
Q ss_pred ccCCcccccCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccc
Q 040876 263 LGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 263 ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~ 315 (343)
++..| +..+ +|+.|+|++|++++..... +++|+.|+|++|.+.+.
T Consensus 166 ------~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 ------SDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ------CCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred ------CCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 44444 3334 8888888888887752222 77888888888887764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1e-16 Score=141.71 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=99.3
Q ss_pred cccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchh
Q 040876 111 WLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQ 190 (343)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~ 190 (343)
.+..+++|++|++++|. + ..+| .+..+ ++|++|++++|++++..+
T Consensus 36 ~~~~l~~L~~L~l~~n~-------------i-----------------~~l~-~l~~l--~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-------------I-----------------QSLA-GMQFF--TNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp CHHHHTTCSEEECTTSC-------------C-----------------CCCT-TGGGC--TTCCEEECCSSCCCCCGG--
T ss_pred chhhcCcCcEEECcCCC-------------c-----------------ccch-HHhhC--CCCCEEECCCCccCCChh--
Confidence 46778888888888876 2 2444 56667 788888888888875433
Q ss_pred ccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccc
Q 040876 191 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHG 270 (343)
Q Consensus 191 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~ 270 (343)
+..+++|++|++++|++++ +|. +.. ++|++|++++|+++ .++ .+..+++|+.|++++|+++ +
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~-~~~--~l~~l~~L~~L~Ls~N~i~------------~ 142 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR-DTD--SLIHLKNLEILSIRNNKLK------------S 142 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS-BSG--GGTTCTTCCEEECTTSCCC------------B
T ss_pred hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccC-CCh--hhcCcccccEEECCCCcCC------------C
Confidence 7788888888888888874 443 223 77888888888887 343 4677777777776665543 2
Q ss_pred cCCCccccc-CCCeEeCcCCcccCccccc-CCCCcEEEccCCccccc
Q 040876 271 EMTNLTNAT-QLWYLRLHSNNFSGPLSLI-SSNLVYLDLFNNSFLGS 315 (343)
Q Consensus 271 ~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-~~~L~~L~Ls~N~l~~~ 315 (343)
++. +... +|++|++++|++++..... +++|++|++++|.+++.
T Consensus 143 -~~~-l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 -IVM-LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -CGG-GGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred -ChH-HccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 222 2333 6777777777776651111 56677777777776654
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.3e-18 Score=167.05 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=138.4
Q ss_pred cCCCCCCEecCCCCC---------CCCCCcccccchhh-ccc----ccccCCCccccCcccchhhhhhcCCCCCccEEE-
Q 040876 113 YRLTHLEQLSVADRP---------SLASREDQDLLSNI-RQR----LSKCRTGAKSSQEISDIFDIFSGCVSKGLEILV- 177 (343)
Q Consensus 113 ~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~nl-~~~----l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~- 177 (343)
..+++|+.|+|++|. .+.+|+.|++++|. ... +..+. ..+.+|+.++++ ++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~-------~~~~~~~~l~~l--~~L~~L~~ 416 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD-------PLLYEKETLQYF--STLKAVDP 416 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC-------TGGGHHHHHHHH--HHHHHHCG
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcc-------cccCCHHHHHHH--HhcccCcc
Confidence 567888888888887 45557777776662 100 00011 115677788888 8888888
Q ss_pred eecCccccccch------hccC--CCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 178 LRSSSISGHLTE------QIGH--FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 178 L~~n~l~~~~p~------~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++.|.+. .++. .+.. ...|++|++++|.+++ +|. ++.+++|++|++++|.++ .+|. .++.+++|+.|
T Consensus 417 l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L 491 (567)
T 1dce_A 417 MRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVL 491 (567)
T ss_dssp GGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEE
T ss_pred hhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEE
Confidence 5555433 1111 1111 1358999999999995 676 999999999999999998 8998 89999999998
Q ss_pred EecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcc-ccc---CCCCcEEEccCCccccccCchhhccC
Q 040876 250 SVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPL-SLI---SSNLVYLDLFNNSFLGSISHFWCYRS 324 (343)
Q Consensus 250 ~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~-~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l 324 (343)
++++|.+ ++ +| .+..+ +|++|+|++|++++.. |.. +++|+.|+|++|.+++..| .+...+
T Consensus 492 ~Ls~N~l------------~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~ 556 (567)
T 1dce_A 492 QASDNAL------------EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLA 556 (567)
T ss_dssp ECCSSCC------------CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHH
T ss_pred ECCCCCC------------CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHH
Confidence 8776554 44 55 44444 9999999999999985 554 7899999999999998644 222333
Q ss_pred CccccCceEec
Q 040876 325 NETKRLRALSL 335 (343)
Q Consensus 325 ~~l~~L~~L~l 335 (343)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 45788998875
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.2e-16 Score=134.50 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=91.9
Q ss_pred CCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhh--hhhcCCCCCccEEEeecCcccc
Q 040876 108 IPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFD--IFSGCVSKGLEILVLRSSSISG 185 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~--~l~~l~~~~L~~L~L~~n~l~~ 185 (343)
+|..+.. ++++|++++|. +. .++. .+..+ ++|++|++++|++++
T Consensus 23 ip~~~~~--~l~~L~l~~n~-------------i~-----------------~~~~~~~~~~l--~~L~~L~Ls~N~l~~ 68 (192)
T 1w8a_A 23 IPRDIPL--HTTELLLNDNE-------------LG-----------------RISSDGLFGRL--PHLVKLELKRNQLTG 68 (192)
T ss_dssp CCSCCCT--TCSEEECCSCC-------------CC-----------------SBCCSCSGGGC--TTCCEEECCSSCCCC
T ss_pred CccCCCC--CCCEEECCCCc-------------CC-----------------ccCCccccccC--CCCCEEECCCCCCCC
Confidence 6665543 78888888876 22 3443 37778 899999999999998
Q ss_pred ccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee
Q 040876 186 HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 186 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~ 257 (343)
..|..+.++++|++|++++|++++..|..+..+++|++|++++|++++..|. .+..+++|++|++++|.++
T Consensus 69 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp BCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBC
T ss_pred cCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCcc
Confidence 8888899999999999999999988777788899999999999999866666 7888888888777766543
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.4e-17 Score=164.54 Aligned_cols=139 Identities=22% Similarity=0.206 Sum_probs=114.6
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
..|+.+..+ +.|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..++++++|++|+|++|.++ .+|. .
T Consensus 215 ~~~~~~~~l--~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~-~ 288 (727)
T 4b8c_D 215 MPKDSKYDD--QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA-E 288 (727)
T ss_dssp -------CC--CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS-S
T ss_pred cChhhhccC--CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh-h
Confidence 456778888 99999999999998 78888889999999999999999 89999999999999999999998 8998 7
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccccCC----CCcEEEccCCcccc
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLISS----NLVYLDLFNNSFLG 314 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~----~L~~L~Ls~N~l~~ 314 (343)
++.+++|++|+|++|.+ + .+|..+..+ +|++|+|++|.+++.+|..+. .+..+++++|.+++
T Consensus 289 ~~~l~~L~~L~L~~N~l------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMV------------T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp GGGGTTCSEEECCSSCC------------C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hcCCCCCCEEECCCCCC------------C-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 89999999988776544 3 567667666 999999999999998887632 22347899999998
Q ss_pred ccC
Q 040876 315 SIS 317 (343)
Q Consensus 315 ~~~ 317 (343)
.+|
T Consensus 356 ~~p 358 (727)
T 4b8c_D 356 PLP 358 (727)
T ss_dssp CCC
T ss_pred cCc
Confidence 776
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=1.2e-15 Score=148.70 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=109.2
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+ . ++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++++|.+++ +|.
T Consensus 73 ~lp~~l--~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-- 137 (571)
T 3cvr_A 73 SLPDNL--P--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-- 137 (571)
T ss_dssp CCCSCC--C--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC--
T ss_pred ccCHhH--c--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC--
Confidence 466554 2 68999999999998 677 457899999999999986 777 655 89999999999984 775
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCcccccCCCeEeCcCCcccCcccccCCCCcEEEccCCccccccCch
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNATQLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSFLGSISHF 319 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 319 (343)
.+++|+.|++++| ++++ +|. ...+|++|++++|++++..+ ..++|++|+|++|.|+ .+|.
T Consensus 138 --~l~~L~~L~Ls~N------------~l~~-lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 138 --LPALLEYINADNN------------QLTM-LPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp --CCTTCCEEECCSS------------CCSC-CCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-SCCC-
T ss_pred --cCccccEEeCCCC------------ccCc-CCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCC-chhh-
Confidence 5677777766654 4554 554 22399999999999998444 5589999999999998 4554
Q ss_pred hhccC-CccccCceEecCCCcccc
Q 040876 320 WCYRS-NETKRLRALSLGDNYLQG 342 (343)
Q Consensus 320 l~~~l-~~l~~L~~L~ls~N~l~g 342 (343)
++..+ ...+.|+.|++++|+|+.
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CC--------CCEEEECCSSCCCC
T ss_pred HHHhhhcccccceEEecCCCccee
Confidence 33211 112233999999999863
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=6.2e-18 Score=165.14 Aligned_cols=175 Identities=19% Similarity=0.160 Sum_probs=138.6
Q ss_pred CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCc-------------cccccchhccC
Q 040876 128 SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSS-------------ISGHLTEQIGH 193 (343)
Q Consensus 128 ~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~-------------l~~~~p~~l~~ 193 (343)
..++|+.|++++| +. .+|+.++.+ ++|+.|++++|. +.+.+|..++.
T Consensus 347 ~~~~L~~L~Ls~n~L~-----------------~Lp~~i~~l--~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~ 407 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-----------------VLQSELESC--KELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407 (567)
T ss_dssp TTTTSSSCCCCHHHHH-----------------HHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-----------------hhHHHHHHH--HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH
Confidence 4567899999999 86 899999999 999999997775 56677888888
Q ss_pred CCCCCEEE-CcCCcccccCCc------cccC--CCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEecc
Q 040876 194 FKNLDTLD-LGNNSIVGLVPL------SLNE--LSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLG 264 (343)
Q Consensus 194 l~~L~~L~-Ls~N~l~~~~p~------~l~~--l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls 264 (343)
+++|+.|+ ++.|.+. .++. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.
T Consensus 408 l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~--------- 474 (567)
T 1dce_A 408 FSTLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNR--------- 474 (567)
T ss_dssp HHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSC---------
T ss_pred HHhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccc---------
Confidence 99999998 6666443 1111 1111 135999999999998 5775 8889999988777654
Q ss_pred CCcccccCCCccccc-CCCeEeCcCCcccCccccc--CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 265 ENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 265 ~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
++ .+|..+..+ +|+.|+|++|.+++ +|.. +++|++|+|++|.+++.. .|..+..+++|+.|++++|+|+
T Consensus 475 ---l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 475 ---LR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp ---CC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGG
T ss_pred ---cc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCC
Confidence 44 667777766 99999999999998 4543 789999999999999864 1356678999999999999998
Q ss_pred c
Q 040876 342 G 342 (343)
Q Consensus 342 g 342 (343)
+
T Consensus 547 ~ 547 (567)
T 1dce_A 547 Q 547 (567)
T ss_dssp G
T ss_pred C
Confidence 6
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2.2e-16 Score=132.77 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=94.7
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccch-hccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTE-QIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
.+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+.
T Consensus 22 ~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 96 (192)
T 1w8a_A 22 EIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK- 96 (192)
T ss_dssp SCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-
T ss_pred cCccCCC----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-
Confidence 6666553 5789999999999865554 488899999999999999988888899999999999999999854444
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS 296 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~ 296 (343)
.+..+++|++|++++ |++++..|..+... +|++|++++|.+++..+
T Consensus 97 ~~~~l~~L~~L~L~~------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYD------------NQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSTTCTTCCEEECCS------------SCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HhcCCCCCCEEECCC------------CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 678888888876665 55556667666666 89999999999987654
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=124.37 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=97.9
Q ss_pred CCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccccc
Q 040876 108 IPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHL 187 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~ 187 (343)
+|..+. ++|++|++++|. + ..+|+.+.++ ++|++|++++|.+++..
T Consensus 25 ip~~~~--~~l~~L~L~~n~-------------i-----------------~~ip~~~~~l--~~L~~L~Ls~N~i~~i~ 70 (193)
T 2wfh_A 25 LPKGIP--RDVTELYLDGNQ-------------F-----------------TLVPKELSNY--KHLTLIDLSNNRISTLS 70 (193)
T ss_dssp CCSCCC--TTCCEEECCSSC-------------C-----------------CSCCGGGGGC--TTCCEEECCSSCCCCCC
T ss_pred CCCCCC--CCCCEEECCCCc-------------C-----------------chhHHHhhcc--cCCCEEECCCCcCCEeC
Confidence 565443 578888888876 2 3677888899 99999999999999877
Q ss_pred chhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceee
Q 040876 188 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 188 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~ 257 (343)
+..|.++++|++|++++|.+++..|..+..+++|++|++++|.++ .+|...|..+++|+.|++++|.+.
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 788999999999999999999877778999999999999999998 666656888999999988888765
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.8e-15 Score=124.24 Aligned_cols=129 Identities=24% Similarity=0.304 Sum_probs=97.4
Q ss_pred CCccEEEeecCccc-cccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 171 KGLEILVLRSSSIS-GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 171 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence 78999999999998 77888888899999999999998855 6788899999999999999866776 67778888887
Q ss_pred EecCceeeEeEEeccCCcccccC-CCccccc-CCCeEeCcCCcccCccc----cc--CCCCcEEEccCCcccc
Q 040876 250 SVNENNLTLKFLDLGENQIHGEM-TNLTNAT-QLWYLRLHSNNFSGPLS----LI--SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 250 ~l~~n~l~l~~L~ls~n~l~~~~-~~~~~~~-~L~~L~Ls~N~l~~~~~----~~--~~~L~~L~Ls~N~l~~ 314 (343)
++++|.+ ++.. +..+... +|++|++++|.+++..+ .. +++|++|++++|.+..
T Consensus 101 ~Ls~N~l------------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKL------------KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSC------------CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCcc------------CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7776544 3321 1333334 77888888887776554 11 6677777777777653
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=8.1e-15 Score=121.36 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=63.3
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
..+.++ ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|...+..
T Consensus 46 ~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 122 (177)
T 2o6r_A 46 GVFDKL--TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDR 122 (177)
T ss_dssp TTTTTC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT
T ss_pred HHhcCc--ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcC
Confidence 345666 77888888888877655555677788888888888877555555677778888888888776 455534566
Q ss_pred CCCCCeEEecCcee
Q 040876 243 LTKLSVFSVNENNL 256 (343)
Q Consensus 243 l~~L~~L~l~~n~l 256 (343)
+++|++|++++|.+
T Consensus 123 l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 123 LTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcccCEEEecCCCe
Confidence 67777666665543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.8e-15 Score=120.52 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=64.4
Q ss_pred CCccEEEeecCccc-cccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeE
Q 040876 171 KGLEILVLRSSSIS-GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVF 249 (343)
Q Consensus 171 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L 249 (343)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence 67888888888888 77888888888888888888888855 6678888888888888888755665 66667777776
Q ss_pred EecCcee
Q 040876 250 SVNENNL 256 (343)
Q Consensus 250 ~l~~n~l 256 (343)
++++|.+
T Consensus 94 ~ls~N~i 100 (149)
T 2je0_A 94 NLSGNKI 100 (149)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 6655443
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=6.4e-16 Score=151.60 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=110.8
Q ss_pred CCccccCCCCCCEecCCCCC-----------CCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEE
Q 040876 108 IPSWLYRLTHLEQLSVADRP-----------SLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEIL 176 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~-----------~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L 176 (343)
+|..+..+++|++|++++|. .+++|+.|++++++.. +.++.....+ ++|++|
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~---------------~~l~~~~~~~--~~L~~L 347 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD---------------RGLEVLAQYC--KQLKRL 347 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHH---------------HHHHHHHHHC--TTCCEE
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCH---------------HHHHHHHHhC--CCCCEE
Confidence 45555566666666666665 4555666666633321 3445555666 778888
Q ss_pred Eee-----------cCcccccc-chhccCCCCCCEEECcCCcccccCCccccC-CCCCcEEEcc----CccCccc-----
Q 040876 177 VLR-----------SSSISGHL-TEQIGHFKNLDTLDLGNNSIVGLVPLSLNE-LSKLRILHLS----DNKLNGT----- 234 (343)
Q Consensus 177 ~L~-----------~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~----~N~l~g~----- 234 (343)
+++ .+.+++.. +.....+++|++|+++.|.+++..+..++. +++|++|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 887 35555432 222345777888888777777666666655 7778888875 5666642
Q ss_pred cChHhhhcCCCCCeEEecCce--ee-------------EeEEeccCCcccc-cCCCccccc-CCCeEeCcCCcccCc-cc
Q 040876 235 LSEIHFVNLTKLSVFSVNENN--LT-------------LKFLDLGENQIHG-EMTNLTNAT-QLWYLRLHSNNFSGP-LS 296 (343)
Q Consensus 235 ~p~~~~~~l~~L~~L~l~~n~--l~-------------l~~L~ls~n~l~~-~~~~~~~~~-~L~~L~Ls~N~l~~~-~~ 296 (343)
++. .+..+++|+.|+++.|. ++ ++.|++++|++++ .++...... +|++|++++|.+++. ++
T Consensus 428 ~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 428 VRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 333 35667788888875422 21 4556666666654 223333333 666666666665542 11
Q ss_pred cc---CCCCcEEEccCCcccccc
Q 040876 297 LI---SSNLVYLDLFNNSFLGSI 316 (343)
Q Consensus 297 ~~---~~~L~~L~Ls~N~l~~~~ 316 (343)
.. +++|++|++++|++++..
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHhcCccCeeECcCCcCCHHH
Confidence 11 556666666666665543
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=5.7e-16 Score=151.99 Aligned_cols=60 Identities=17% Similarity=0.036 Sum_probs=43.7
Q ss_pred CCCeEeCcCCcccCc-cc---ccCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 280 QLWYLRLHSNNFSGP-LS---LISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 280 ~L~~L~Ls~N~l~~~-~~---~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
+|++|++++|++++. ++ ..+++|++|++++|.+++.. ++..+..+++|++|++++|++++
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA---IAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH---HHHHHHHCSSCCEEEEESCBCCT
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH---HHHHHHhcCccCeeECcCCcCCH
Confidence 788888888888752 22 22678899999998886643 23334567889999999998875
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.7e-15 Score=121.15 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=97.1
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh-H
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE-I 238 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~ 238 (343)
.+|..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++ .+|. .
T Consensus 40 ~i~~~~~~l--~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 114 (168)
T 2ell_A 40 KIEGLTAEF--VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLE 114 (168)
T ss_dssp BCSSCCGGG--GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCC-SSGGGG
T ss_pred hHHHHHHhC--CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccC-cchhHH
Confidence 677778888 9999999999999965 77899999999999999999878888888999999999999998 4442 2
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCC---Cccccc-CCCeEeCcCCcccCcc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT---NLTNAT-QLWYLRLHSNNFSGPL 295 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~---~~~~~~-~L~~L~Ls~N~l~~~~ 295 (343)
.+..+++|++|++++| .+++..+ ..+... +|++|++++|.+....
T Consensus 115 ~l~~l~~L~~L~l~~N------------~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 115 PLKKLECLKSLDLFNC------------EVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp GGSSCSCCCEEECCSS------------GGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred HHhcCCCCCEEEeeCC------------cCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 6788888888777664 4554433 245545 9999999999887643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=9.2e-15 Score=117.44 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=71.1
Q ss_pred CCccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCcccccc
Q 040876 108 IPSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHL 187 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~ 187 (343)
+|..+..+++|++|++++|. +. .+ +.+..+ ++|++|++++|.+++.+
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~-------------l~-----------------~~-~~~~~l--~~L~~L~Ls~n~i~~~~ 80 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVG-------------LT-----------------SI-ANLPKL--NKLKKLELSDNRVSGGL 80 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSC-------------CC-----------------CC-TTCCCC--TTCCEEECCSSCCCSCT
T ss_pred HHHHHhhcCCCcEEECcCCC-------------CC-----------------Cc-hhhhcC--CCCCEEECCCCcccchH
Confidence 56666667777777777665 21 22 445556 67777777777777656
Q ss_pred chhccCCCCCCEEECcCCccccc-CCccccCCCCCcEEEccCccCccccC--hHhhhcCCCCCeEEec
Q 040876 188 TEQIGHFKNLDTLDLGNNSIVGL-VPLSLNELSKLRILHLSDNKLNGTLS--EIHFVNLTKLSVFSVN 252 (343)
Q Consensus 188 p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~~p--~~~~~~l~~L~~L~l~ 252 (343)
|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|+.|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666677777777777777642 23566677777777777777763322 0256667777776654
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=8.2e-17 Score=136.05 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=121.6
Q ss_pred hhhcCCCCCccEEEeecCccccccch------hccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTE------QIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~ 237 (343)
.+... ..++.++++.+.+++.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.
T Consensus 13 ~~~~~--~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 13 IFEER--KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp HHHHT--TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred HHHhc--ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc
Confidence 35555 7778888888888877776 89999999999999999985 77 8899999999999999998 7887
Q ss_pred HhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc--c--cCCCCcEEEccCCcc
Q 040876 238 IHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS--L--ISSNLVYLDLFNNSF 312 (343)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~--~--~~~~L~~L~Ls~N~l 312 (343)
.+..+++|+.|++++|.++ + +|. +... +|++|++++|++++..+ . .+++|++|++++|.+
T Consensus 88 -~~~~~~~L~~L~L~~N~l~------------~-l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 88 -LDAVADTLEELWISYNQIA------------S-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHHCSEEEEEEEECC------------C-HHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred -hhhcCCcCCEEECcCCcCC------------c-CCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 6777888999888876654 2 343 3334 89999999999987433 1 278999999999999
Q ss_pred ccccCc------hhhccCCccccCceEecCCCcccc
Q 040876 313 LGSISH------FWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 313 ~~~~~~------~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
++..|. .....+..+++|+.|| +|.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 876432 1112356788999987 676654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=119.21 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=87.1
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++ ++...
T Consensus 24 ~ip~~~~----~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~ 97 (193)
T 2wfh_A 24 VLPKGIP----RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRT 97 (193)
T ss_dssp SCCSCCC----TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTT
T ss_pred cCCCCCC----CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE-eCHHH
Confidence 5665443 67888888888888 677888888888999999888887767778888888889998888884 44436
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccC
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSG 293 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~ 293 (343)
|..+++|+.|++++|. ++...+..+... +|+.|++++|.+..
T Consensus 98 f~~l~~L~~L~L~~N~------------l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND------------ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTTCTTCCEEECCSSC------------CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred hCCCCCCCEEECCCCC------------CCeeChhhhhcCccccEEEeCCCCeec
Confidence 7888888887766544 444444445544 88888888888764
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=6.1e-14 Score=116.03 Aligned_cols=113 Identities=26% Similarity=0.333 Sum_probs=64.3
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEE
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFS 250 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~ 250 (343)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEE
Confidence 55666666666666544445566666666666666666444444566666666666666666 33332455566666555
Q ss_pred ecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc
Q 040876 251 VNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS 296 (343)
Q Consensus 251 l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~ 296 (343)
+++| ++++..+..+... +|++|++++|.+.+..|
T Consensus 107 l~~N------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTN------------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSS------------CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCC------------cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5443 3333333333333 56666666666655443
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.4e-14 Score=115.86 Aligned_cols=130 Identities=21% Similarity=0.277 Sum_probs=99.9
Q ss_pred hhcCCCCCccEEEeecCccccccchhccCCC-CCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 165 FSGCVSKGLEILVLRSSSISGHLTEQIGHFK-NLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 165 l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
+..+ .+|++|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|...+..+
T Consensus 15 ~~~~--~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNA--VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp EECT--TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred cCCc--CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 4456 88999999999999 4554 54554 999999999999865 57889999999999999998 5665356889
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCC--ccccc-CCCeEeCcCCcccCcccc----c--CCCCcEEEccCCcccc
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTN--LTNAT-QLWYLRLHSNNFSGPLSL----I--SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~--~~~~~-~L~~L~Ls~N~l~~~~~~----~--~~~L~~L~Ls~N~l~~ 314 (343)
++|++|++++|.++ .+|. .+... +|++|++++|.++...+. . +++|++|++++|.+..
T Consensus 88 ~~L~~L~L~~N~i~-------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 88 PDLTELILTNNSLV-------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSCCCC-------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEECCCCcCC-------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99998887776543 3333 34444 899999999998865442 2 7888999998888754
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=5.8e-14 Score=116.13 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=98.8
Q ss_pred ccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhc
Q 040876 112 LYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQI 191 (343)
Q Consensus 112 l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l 191 (343)
+.++.+|++|++++|. +. .+|. +..+. ++|++|++++|.+++. ..+
T Consensus 15 ~~~~~~L~~L~l~~n~-------------l~-----------------~i~~-~~~~~-~~L~~L~Ls~N~l~~~--~~l 60 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-------------IP-----------------VIEN-LGATL-DQFDAIDFSDNEIRKL--DGF 60 (176)
T ss_dssp EECTTSCEEEECTTSC-------------CC-----------------SCCC-GGGGT-TCCSEEECCSSCCCEE--CCC
T ss_pred cCCcCCceEEEeeCCC-------------Cc-----------------hhHH-hhhcC-CCCCEEECCCCCCCcc--ccc
Confidence 5667888888888876 22 3333 33330 4899999999999864 678
Q ss_pred cCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh-HhhhcCCCCCeEEecCceeeEeEEeccCCcccc
Q 040876 192 GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE-IHFVNLTKLSVFSVNENNLTLKFLDLGENQIHG 270 (343)
Q Consensus 192 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~ 270 (343)
..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ..+..+++|+.|++++|.+ +
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i------------~- 126 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV------------T- 126 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG------------G-
T ss_pred ccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC------------C-
Confidence 88999999999999998554444588999999999999996 6664 2577888888877776544 3
Q ss_pred cCCCc----cccc-CCCeEeCcCCcccC
Q 040876 271 EMTNL----TNAT-QLWYLRLHSNNFSG 293 (343)
Q Consensus 271 ~~~~~----~~~~-~L~~L~Ls~N~l~~ 293 (343)
.+|.. +... +|++||++.|....
T Consensus 127 ~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 127 NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 33442 4444 89999999998764
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=5.3e-15 Score=145.06 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=94.5
Q ss_pred hhhcCCCCCccEEEeecCccccc-cchhccCCCCCCEEECc---------CCcccccCCcccc-CCCCCcEEEccCccCc
Q 040876 164 IFSGCVSKGLEILVLRSSSISGH-LTEQIGHFKNLDTLDLG---------NNSIVGLVPLSLN-ELSKLRILHLSDNKLN 232 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls---------~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~ 232 (343)
.+..+ ++|++|++++| ++.. ++.....+++|++|+++ .+.+++.....+. .+++|++|.+..|.++
T Consensus 309 ~~~~~--~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 309 LLCQC--PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHTTC--TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHhcC--CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 34455 66666666655 3321 22222345666666662 2333332222222 3566666666666665
Q ss_pred cccChHhhhcCCCCCeEEec--C----ceee-----------------EeEEeccCCcccccCCCcccc-c-CCCeEeCc
Q 040876 233 GTLSEIHFVNLTKLSVFSVN--E----NNLT-----------------LKFLDLGENQIHGEMTNLTNA-T-QLWYLRLH 287 (343)
Q Consensus 233 g~~p~~~~~~l~~L~~L~l~--~----n~l~-----------------l~~L~ls~n~l~~~~~~~~~~-~-~L~~L~Ls 287 (343)
+..+......+++|+.|+++ + +.++ ++.|++++ .+++.....+.. . +|++|+++
T Consensus 386 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc
Confidence 43333122346667777766 2 2222 45566655 454432222222 3 78888888
Q ss_pred CCcccCcccc----cCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCccc
Q 040876 288 SNNFSGPLSL----ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 288 ~N~l~~~~~~----~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
+|.+++..+. .+++|++|++++|.+++... ...+..+++|+.|++++|+++
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL---LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH---HHTGGGGGGSSEEEEESSCCB
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH---HHHHHhCCCCCEEeeeCCCCC
Confidence 8888654332 26888888888888855432 233456788888888888774
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=4.3e-14 Score=138.54 Aligned_cols=176 Identities=15% Similarity=0.091 Sum_probs=110.9
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccc-hhccCCCCCCEEECcCCccccc-CCccccCCCCCcEEEcc---------C
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLT-EQIGHFKNLDTLDLGNNSIVGL-VPLSLNELSKLRILHLS---------D 228 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~---------~ 228 (343)
.+|..+..+ ++|++|++++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|++. .
T Consensus 280 ~l~~~~~~~--~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 280 YLPAVYSVC--SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGGHHHH--TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred hHHHHHHhh--CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 344445566 778888888887664332 23557788888888877 4322 22222357788888773 3
Q ss_pred ccCccccChHhhhcCCCCCeEEecCceee-------------EeEEecc--C----Cccccc-----CCCccccc-CCCe
Q 040876 229 NKLNGTLSEIHFVNLTKLSVFSVNENNLT-------------LKFLDLG--E----NQIHGE-----MTNLTNAT-QLWY 283 (343)
Q Consensus 229 N~l~g~~p~~~~~~l~~L~~L~l~~n~l~-------------l~~L~ls--~----n~l~~~-----~~~~~~~~-~L~~ 283 (343)
+.+++.........+++|+.|.+..|.++ ++.|+++ + +.+++. ++..+... +|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 44543222212234788888887777664 5678887 3 455521 12223334 8999
Q ss_pred EeCcCCcccCcccc----cCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 284 LRLHSNNFSGPLSL----ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 284 L~Ls~N~l~~~~~~----~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
|++++ .+++..+. .+++|++|++++|.+++..+..+ ...+++|++|++++|.+++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l---~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH---HHHCTTCCEEEEESCSCCH
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH---HhcCCCcCEEECcCCCCcH
Confidence 99977 56543322 26889999999999877543222 2458899999999999854
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=3.3e-15 Score=126.09 Aligned_cols=134 Identities=24% Similarity=0.218 Sum_probs=108.9
Q ss_pred cchhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChH
Q 040876 159 SDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEI 238 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~ 238 (343)
..+|..+..+ ++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|
T Consensus 38 ~~l~~~~~~l--~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-- 109 (198)
T 1ds9_A 38 EKMDATLSTL--KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-- 109 (198)
T ss_dssp CCCHHHHHHT--TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH--
T ss_pred hhhhHHHhcC--CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC--
Confidence 4667799999 999999999999996 77 8899999999999999998 78888888899999999999998 465
Q ss_pred hhhcCCCCCeEEecCceeeEeEEeccCCcccccCC-Cccccc-CCCeEeCcCCcccCcccc-----------c--CCCCc
Q 040876 239 HFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMT-NLTNAT-QLWYLRLHSNNFSGPLSL-----------I--SSNLV 303 (343)
Q Consensus 239 ~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~-~~~~~~-~L~~L~Ls~N~l~~~~~~-----------~--~~~L~ 303 (343)
.+..+++|++|++++|.++ +..+ ..+... +|++|++++|.+++.+|. . +++|+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKIT------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp HHHHHHHSSEEEESEEECC------------CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred ccccCCCCCEEECCCCcCC------------chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 5788899999888876653 2111 233334 999999999999887654 1 78999
Q ss_pred EEEccCCcccc
Q 040876 304 YLDLFNNSFLG 314 (343)
Q Consensus 304 ~L~Ls~N~l~~ 314 (343)
+|| +|.++.
T Consensus 178 ~Ld--~~~i~~ 186 (198)
T 1ds9_A 178 KLD--GMPVDV 186 (198)
T ss_dssp EEC--CGGGTT
T ss_pred EEC--CcccCH
Confidence 987 677654
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=3.4e-13 Score=110.90 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=60.5
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+. +++++|++++|++++..|..+.++++|++|++++|++++..+..+..+++|++|++++|+++ .+|...
T Consensus 23 ~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~ 97 (170)
T 3g39_A 23 SVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGA 97 (170)
T ss_dssp SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-EeCHHH
Confidence 4554442 56777777777777666666777777777777777777554445667777777777777776 444435
Q ss_pred hhcCCCCCeEEecCcee
Q 040876 240 FVNLTKLSVFSVNENNL 256 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l 256 (343)
+..+++|+.|++++|.+
T Consensus 98 ~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred hcCCCCCCEEEeCCCCC
Confidence 66667776666665544
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=7.2e-13 Score=109.42 Aligned_cols=92 Identities=22% Similarity=0.284 Sum_probs=57.1
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.+|..+. ++|++|++++|++++..|..+.++++|++|+|++|++++..+..+..+++|++|++++|+++ .+|...
T Consensus 26 ~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 100 (174)
T 2r9u_A 26 SVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGA 100 (174)
T ss_dssp SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred ccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHH
Confidence 4554442 56677777777777666666667777777777777776443334566677777777777766 444434
Q ss_pred hhcCCCCCeEEecCcee
Q 040876 240 FVNLTKLSVFSVNENNL 256 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l 256 (343)
+..+++|++|++++|.+
T Consensus 101 ~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTCTTCSEEECCSSCB
T ss_pred hccccCCCEEEeCCCCc
Confidence 66666666666655544
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=4.4e-14 Score=130.91 Aligned_cols=162 Identities=16% Similarity=0.104 Sum_probs=95.1
Q ss_pred CCccEEEeecCccccccchhccC-----CCCCCEEECcCCcccccCCcccc-CCCCCcEEEccCccCccccChHhh----
Q 040876 171 KGLEILVLRSSSISGHLTEQIGH-----FKNLDTLDLGNNSIVGLVPLSLN-ELSKLRILHLSDNKLNGTLSEIHF---- 240 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~g~~p~~~~---- 240 (343)
+.|++|++++|.++......+.. .++|++|+|++|.++......+. .+++|++|++++|.++..-.. .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHHH
Confidence 78999999999998654444432 27999999999999754333333 457899999999999743222 23
Q ss_pred -hcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcc----cc---cCCCCcEEEccCCc
Q 040876 241 -VNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPL----SL---ISSNLVYLDLFNNS 311 (343)
Q Consensus 241 -~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~----~~---~~~~L~~L~Ls~N~ 311 (343)
...+.|+.|++++|.++-. .. ..++..+... +|++|+|++|.+++.. +. ..++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~-------~~-~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAA-------GV-AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHH-------HH-HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChH-------HH-HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2357788888887765300 00 0111112222 5555555555554311 11 13455555665555
Q ss_pred cccccCchhhccCCccccCceEecCCCccc
Q 040876 312 FLGSISHFWCYRSNETKRLRALSLGDNYLQ 341 (343)
Q Consensus 312 l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~ 341 (343)
|++.....++..+...++|++|+|++|.|+
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 555443344444444555555666555554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3.7e-12 Score=104.65 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=86.7
Q ss_pred CccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEe
Q 040876 172 GLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSV 251 (343)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l 251 (343)
..+++++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|+++ .+|...|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 3578999999998 5777663 78999999999999887888999999999999999998 566546788888888777
Q ss_pred cCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc
Q 040876 252 NENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS 296 (343)
Q Consensus 252 ~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~ 296 (343)
++| +|++..+..+... +|++|+|++|.++...+
T Consensus 86 ~~N------------~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDN------------QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSS------------CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCC------------ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 654 4555555556555 89999999998876544
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7.1e-12 Score=103.38 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=87.6
Q ss_pred ccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEec
Q 040876 173 LEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVN 252 (343)
Q Consensus 173 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~ 252 (343)
-+.+++++|+++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|+++ .+|...|..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 468999999997 6787664 88999999999999888889999999999999999998 5666467888999887776
Q ss_pred CceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc
Q 040876 253 ENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS 296 (343)
Q Consensus 253 ~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~ 296 (343)
+| +|++..+..+... +|++|+|++|.+....+
T Consensus 90 ~N------------~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DN------------HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SS------------CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CC------------ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 65 4454445546555 99999999999886543
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.8e-13 Score=126.84 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=106.5
Q ss_pred CCccEEEeecCccccccchhc-cCCCCCCEEECcCCcccccCCccc-----cCCCCCcEEEccCccCccc----cChHhh
Q 040876 171 KGLEILVLRSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSL-----NELSKLRILHLSDNKLNGT----LSEIHF 240 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~l~~N~l~g~----~p~~~~ 240 (343)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+ ...++|++|++++|.++.. ++. .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME-GL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH-HH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH-HH
Confidence 589999999999985444443 345789999999999986544444 2468899999999999732 333 45
Q ss_pred hcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccc----cc---CCCCcEEEccCCcc
Q 040876 241 VNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLS----LI---SSNLVYLDLFNNSF 312 (343)
Q Consensus 241 ~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~----~~---~~~L~~L~Ls~N~l 312 (343)
...++|++|++++|.++.. .. ..++..+... +|++|+|++|.+++... .. .++|++|+|++|.|
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~-------g~-~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDE-------GL-ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HTCSSCCEEECTTSSCHHH-------HH-HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCEEeCCCCCCCcH-------HH-HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 6778888888777655300 00 0123333444 89999999999986322 21 57899999999999
Q ss_pred ccccCchhhccCCcc-ccCceEe--cCCCccc
Q 040876 313 LGSISHFWCYRSNET-KRLRALS--LGDNYLQ 341 (343)
Q Consensus 313 ~~~~~~~l~~~l~~l-~~L~~L~--ls~N~l~ 341 (343)
++.....+....... ..|+.+. +..|.++
T Consensus 252 ~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 252 SSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 887665554432221 1277777 6666654
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.6e-11 Score=112.42 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCccccCCCCCCEecCCC-CCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccc
Q 040876 108 IPSWLYRLTHLEQLSVAD-RPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGH 186 (343)
Q Consensus 108 ip~~l~~l~~L~~L~Ls~-n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~ 186 (343)
+|. +..+++|++|+|++ |. +. +..+..|.++ ++|++|+|++|+|++.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~-------------l~----------------~~~~~~~~~l--~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQH-------------LQ----------------HLELRDLRGL--GELRNLTIVKSGLRFV 71 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSS-------------CC----------------EECGGGSCSC--CCCSEEECCSSCCCEE
T ss_pred cCC-CCCCCCeeEEEccCCCC-------------CC----------------CcChhHhccc--cCCCEEECCCCcccee
Confidence 888 99999999999986 66 32 2334678889 9999999999999998
Q ss_pred cchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCcc
Q 040876 187 LTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNG 233 (343)
Q Consensus 187 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g 233 (343)
.|..|.++++|++|+|++|+|++..+..+..++ |+.|++.+|.+..
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888899999999999999999955444555555 9999999999873
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.26 E-value=1.2e-11 Score=112.48 Aligned_cols=78 Identities=15% Similarity=0.040 Sum_probs=49.0
Q ss_pred EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCc-EEEccCCccccccCchhhccCCccccCce
Q 040876 258 LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLV-YLDLFNNSFLGSISHFWCYRSNETKRLRA 332 (343)
Q Consensus 258 l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~ 332 (343)
++.+++++|+++...+..+..+ +|+.+++.+| ++...+.. +.+|+ .+++.+ .++... +..|..+++|+.
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----~~aF~~c~~L~~ 301 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----FGAFMGCDNLRY 301 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC----TTTTTTCTTEEE
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc----hhhhhCCccCCE
Confidence 4556777777765555556666 7778877776 54433332 56677 777776 554322 245677778888
Q ss_pred EecCCCccc
Q 040876 333 LSLGDNYLQ 341 (343)
Q Consensus 333 L~ls~N~l~ 341 (343)
+++++|.++
T Consensus 302 l~l~~n~i~ 310 (329)
T 3sb4_A 302 VLATGDKIT 310 (329)
T ss_dssp EEECSSCCC
T ss_pred EEeCCCccC
Confidence 887777654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=5.9e-11 Score=107.91 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=66.2
Q ss_pred CCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCC-eEeCcCCcccCcc
Q 040876 218 LSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLW-YLRLHSNNFSGPL 295 (343)
Q Consensus 218 l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~-~L~Ls~N~l~~~~ 295 (343)
+++|+.+++++|+++ .+|...|.++++|+.+++. +| ++...+..+..+ +|+ .+++.+ .++...
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~------------~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLP------------HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECC------------TT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECC------------cc-cceehHHHhhCChhccEEEEEcc-cceEEc
Confidence 445555556555555 5555455555555555554 44 444445566666 899 999998 666544
Q ss_pred ccc---CCCCcEEEccCCccccccCchhhccCCccccCceEec
Q 040876 296 SLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSL 335 (343)
Q Consensus 296 ~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~l 335 (343)
+.. +++|+.+++++|.++...+ ..|.++++|+.++.
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~----~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGD----ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECT----TTTCTTCCCCEEEC
T ss_pred hhhhhCCccCCEEEeCCCccCccch----hhhcCCcchhhhcc
Confidence 443 7899999999999986543 56788999998864
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.4e-11 Score=110.18 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=83.0
Q ss_pred cchhhhhhcCCCCCccEEEeec-CccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccCh
Q 040876 159 SDIFDIFSGCVSKGLEILVLRS-SSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSE 237 (343)
Q Consensus 159 ~~ip~~l~~l~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~ 237 (343)
..+|. +..+ ++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|+ .+|.
T Consensus 22 ~~ip~-l~~~--~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 97 (347)
T 2ifg_A 22 DSLHH-LPGA--ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSW 97 (347)
T ss_dssp TTTTT-SCSC--SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred CccCC-CCCC--CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCH
Confidence 47888 9888 9999999996 9999877788999999999999999999988889999999999999999998 6666
Q ss_pred HhhhcCCCCCeEEecCceee
Q 040876 238 IHFVNLTKLSVFSVNENNLT 257 (343)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~l~ 257 (343)
..+..++ |+.|++.+|.+.
T Consensus 98 ~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCC-CCEEECCSSCCC
T ss_pred HHcccCC-ceEEEeeCCCcc
Confidence 4565555 999999988875
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.8e-10 Score=106.02 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=112.2
Q ss_pred chhhhhhcCCCCCccEEEeecCccc---------cccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCcc
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSIS---------GHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNK 230 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 230 (343)
.+.+++..+ ++|+.|.+...... +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.
T Consensus 130 ~L~~s~~~l--~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 130 GIVENKEKF--AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHTTHHHH--TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB
T ss_pred HHHHhhhhc--chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC
Confidence 445556677 89999998665321 235556678899999999887311 3343 4 37899999999888
Q ss_pred CccccChHhhh--cCCCCCeEEecCc--eeeEeEEeccCCcccccCCCcc---cccCCCeEeCcCCcccCccc------c
Q 040876 231 LNGTLSEIHFV--NLTKLSVFSVNEN--NLTLKFLDLGENQIHGEMTNLT---NATQLWYLRLHSNNFSGPLS------L 297 (343)
Q Consensus 231 l~g~~p~~~~~--~l~~L~~L~l~~n--~l~l~~L~ls~n~l~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~------~ 297 (343)
+...... .+. .+++|+.|+|+.+ ... ....+.+ +...+ ..++|++|+|++|.+.+..+ .
T Consensus 205 l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~------~~~~~~~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~ 276 (362)
T 2ra8_A 205 LPDSVVE-DILGSDLPNLEKLVLYVGVEDYG------FDGDMNV-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276 (362)
T ss_dssp CCHHHHH-HHHHSBCTTCCEEEEECBCGGGT------CCSCGGG-TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS
T ss_pred CChHHHH-HHHHccCCCCcEEEEeccccccc------cchhHHH-HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc
Confidence 7643222 333 6899999987531 100 0000111 11111 12389999999998875322 1
Q ss_pred cCCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcccc
Q 040876 298 ISSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYLQG 342 (343)
Q Consensus 298 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l~g 342 (343)
.+++|++|+|+.|.+++..+..++..+..+++|+.|++++|.|+.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 267899999999999887666666666678899999999998864
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.92 E-value=9.4e-10 Score=96.47 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=64.8
Q ss_pred hcCCCCCccEEEeecCcccc--ccchhccCCCCCCEEECcCCcccccCCccccCCC--CCcEEEccCccCccccCh----
Q 040876 166 SGCVSKGLEILVLRSSSISG--HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS--KLRILHLSDNKLNGTLSE---- 237 (343)
Q Consensus 166 ~~l~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~l~~N~l~g~~p~---- 237 (343)
.++ ++|++|+|++|++++ .+|..+..+++|++|+|++|++++. ..+..++ +|++|++++|.+.+.+|.
T Consensus 167 ~~l--~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENI--PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHC--TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhC--CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 567 899999999999997 5567778899999999999999854 3455555 899999999999876662
Q ss_pred --HhhhcCCCCCeEE
Q 040876 238 --IHFVNLTKLSVFS 250 (343)
Q Consensus 238 --~~~~~l~~L~~L~ 250 (343)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 2467788888876
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.3e-07 Score=88.08 Aligned_cols=164 Identities=12% Similarity=0.122 Sum_probs=76.9
Q ss_pred hhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhc
Q 040876 163 DIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVN 242 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~ 242 (343)
..|.++ ++|+.+++..|.++. ++.......+|+.+.+..+ ++..-...|.++++|+.+.+..+ ++ .++...|.+
T Consensus 174 ~aF~~c--~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~ 247 (401)
T 4fdw_A 174 DIFYYC--YNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE 247 (401)
T ss_dssp STTTTC--TTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT
T ss_pred HHhhCc--ccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc
Confidence 355666 677777777666663 3332222466666666533 44333345556666666666543 32 333333433
Q ss_pred CCCCCeEEecCcee-----------eEeEEeccCCccc-----ccCCCccccc-CCCeEeCcCCcccCccccc---CCCC
Q 040876 243 LTKLSVFSVNENNL-----------TLKFLDLGENQIH-----GEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNL 302 (343)
Q Consensus 243 l~~L~~L~l~~n~l-----------~l~~L~ls~n~l~-----~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L 302 (343)
.+|+.+.+..+-- .++.+++.+|.+. ...+..+..+ +|+.+++.. .++...... +.+|
T Consensus 248 -~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 -SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp -CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred -CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 4444444432210 0333444333332 1222334444 666666653 233222222 4556
Q ss_pred cEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 303 VYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 303 ~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
+.+.+..| ++... ...|..+ +|+.+++++|.+
T Consensus 326 ~~l~lp~~-l~~I~----~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 326 TQLTIPAN-VTQIN----FSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEEEECTT-CCEEC----TTSSSSS-CCCEEEECCSSC
T ss_pred cEEEECcc-ccEEc----HHhCCCC-CCCEEEEcCCCC
Confidence 66666433 33211 2344555 666666666543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2.4e-09 Score=98.40 Aligned_cols=188 Identities=13% Similarity=0.106 Sum_probs=115.7
Q ss_pred CccccCCCCCCEecCCCCCCCCCCcccccchhhcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccc
Q 040876 109 PSWLYRLTHLEQLSVADRPSLASREDQDLLSNIRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLT 188 (343)
Q Consensus 109 p~~l~~l~~L~~L~Ls~n~~l~~L~~L~l~~nl~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p 188 (343)
...+.++++|+.|.+.... .+...++.. . .+.+...+..+ ++|+.|++++|.-. .++
T Consensus 132 ~~s~~~l~~L~~L~l~~~~----~e~~~is~~-~---------------~~~L~~ll~~~--P~L~~L~L~g~~~l-~l~ 188 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDID----FEEQEISWI-E---------------QVDLSPVLDAM--PLLNNLKIKGTNNL-SIG 188 (362)
T ss_dssp HTTHHHHTTCSEEEECCCC----TTTCCGGGC-B---------------CCBCHHHHHTC--TTCCEEEEECCBTC-BCC
T ss_pred HHhhhhcchhhheeecCcc----hhhcccccc-c---------------ccCHHHHHhcC--CCCcEEEEeCCCCc-eec
Confidence 4446678899999886542 011111100 0 02456667777 99999999887311 233
Q ss_pred hhccCCCCCCEEECcCCcccccCCcccc--CCCCCcEEEccC--ccCccc-----cChHhh--hcCCCCCeEEecCceee
Q 040876 189 EQIGHFKNLDTLDLGNNSIVGLVPLSLN--ELSKLRILHLSD--NKLNGT-----LSEIHF--VNLTKLSVFSVNENNLT 257 (343)
Q Consensus 189 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~l~~--N~l~g~-----~p~~~~--~~l~~L~~L~l~~n~l~ 257 (343)
. + .+++|++|++..+.++......+. .+++|++|+|+. |...+. +.. .+ ..+++|++|++.+|.+
T Consensus 189 ~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i- 264 (362)
T 2ra8_A 189 K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEE- 264 (362)
T ss_dssp S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTT-
T ss_pred c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCC-
Confidence 3 4 388999999999888755444454 789999999853 222111 111 12 2467888888776544
Q ss_pred EeEEeccCCcccccCC----CcccccCCCeEeCcCCcccCc----cccc---CCCCcEEEccCCccccccCchhhccCCc
Q 040876 258 LKFLDLGENQIHGEMT----NLTNATQLWYLRLHSNNFSGP----LSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNE 326 (343)
Q Consensus 258 l~~L~ls~n~l~~~~~----~~~~~~~L~~L~Ls~N~l~~~----~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 326 (343)
.+..+ ....+.+|++|+|+.|.+++. ++.. +++|+.|++++|.+++.....+...+
T Consensus 265 -----------~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 265 -----------QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp -----------HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred -----------chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 22111 111223899999999998863 2222 68899999999998876543443322
Q ss_pred cccCceEecCCCc
Q 040876 327 TKRLRALSLGDNY 339 (343)
Q Consensus 327 l~~L~~L~ls~N~ 339 (343)
...++++.|+
T Consensus 332 ---g~~~~~~~~~ 341 (362)
T 2ra8_A 332 ---PMKIDVSDSQ 341 (362)
T ss_dssp ---CSEEECCSBC
T ss_pred ---CCEEEecCCc
Confidence 3567887765
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=1.7e-07 Score=87.43 Aligned_cols=167 Identities=10% Similarity=0.081 Sum_probs=86.6
Q ss_pred chhhhhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHh
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIH 239 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~ 239 (343)
.++.....+ .+|+.+.+..+ ++..-...|.++++|+.+++..+ ++..-...|.+ .+|+.+.+. +.++ .++...
T Consensus 194 ~I~~~aF~~--~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~a 266 (401)
T 4fdw_A 194 KLPASTFVY--AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRA 266 (401)
T ss_dssp EECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTT
T ss_pred EechhhEee--cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhH
Confidence 344433334 55566555532 44333344555555666655543 22122223333 445555552 2333 344434
Q ss_pred hhcCCCCCeEEecCceee-----------------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---
Q 040876 240 FVNLTKLSVFSVNENNLT-----------------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI--- 298 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~-----------------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~--- 298 (343)
|.++++|+.+.+.+|.+. ++.+++. +.++......+..+ +|+.+++..| ++......
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 555555555555444321 3334444 23443334556655 8999999665 54333322
Q ss_pred CCCCcEEEccCCccccccCchhhccCCccc-cCceEecCCCcc
Q 040876 299 SSNLVYLDLFNNSFLGSISHFWCYRSNETK-RLRALSLGDNYL 340 (343)
Q Consensus 299 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~-~L~~L~ls~N~l 340 (343)
+ +|+.+++++|.+.... ...+..++ .++.|.+..+.+
T Consensus 345 ~-~L~~l~l~~n~~~~l~----~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQVF----EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp S-CCCEEEECCSSCCBCC----CSSCCCSCTTCCEEEECGGGH
T ss_pred C-CCCEEEEcCCCCcccc----cccccCCCCCccEEEeCHHHH
Confidence 5 8999999999765432 23455553 678888876643
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=3.1e-09 Score=88.31 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=19.7
Q ss_pred CCCeEeC--cCCcccCcccc----c---CCCCcEEEccCCcccc
Q 040876 280 QLWYLRL--HSNNFSGPLSL----I---SSNLVYLDLFNNSFLG 314 (343)
Q Consensus 280 ~L~~L~L--s~N~l~~~~~~----~---~~~L~~L~Ls~N~l~~ 314 (343)
+|++|+| ++|.++..... . .++|++|+|++|.+..
T Consensus 122 ~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 6677777 66666542211 1 3556666666666643
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=1.9e-08 Score=83.45 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=50.4
Q ss_pred chhhhhhcCCCCCccEEEeecCccccc----cchhccCCCCCCEEECcCCccccc----CCccccCCCCCcEEEc--cCc
Q 040876 160 DIFDIFSGCVSKGLEILVLRSSSISGH----LTEQIGHFKNLDTLDLGNNSIVGL----VPLSLNELSKLRILHL--SDN 229 (343)
Q Consensus 160 ~ip~~l~~l~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l--~~N 229 (343)
.+.+.+... ++|++|+|++|.+... +...+...+.|++|+|++|.|+.. +...+...++|++|++ ++|
T Consensus 56 ~l~~~L~~~--~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 56 ACAEALKTN--TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHTTC--CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHhC--CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 344455555 6677777777766532 233344456677777777766543 2344555566666666 566
Q ss_pred cCccc----cChHhhhcCCCCCeEEecCce
Q 040876 230 KLNGT----LSEIHFVNLTKLSVFSVNENN 255 (343)
Q Consensus 230 ~l~g~----~p~~~~~~l~~L~~L~l~~n~ 255 (343)
.++.. +.. .+...++|++|++++|.
T Consensus 134 ~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 134 PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred CCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 66522 112 33334555555555443
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.6e-07 Score=80.88 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=91.3
Q ss_pred CccccceEeCCCCCcEEEEecCCCccccccccceeCCC------------CCCCCCCCCCc-cccCCCCCCE--ecCCCC
Q 040876 62 CCTWAGIVCDNVTGHIIELNLRNPFTYYRRSRYKANPR------------SMLVGKGPIPS-WLYRLTHLEQ--LSVADR 126 (343)
Q Consensus 62 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~g~~~~~------------~n~~~~~~ip~-~l~~l~~L~~--L~Ls~n 126 (343)
.|.|.|+.|+....+|+.+-..+..+ ....|.+.+. +|..++. ++- .+...+.|+. ++++.|
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~--~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~-LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPP--HTILNELKPEQVEQLKLIMSKRYDGSQQA-LDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCC--HHHHTSCCHHHHHHHHHHHHHTEETTTTE-EECTTGGGCHHHHHTTCCCCTT
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCc--ccccccCCHHHHHHHHHHHHhccchhccc-cCHHHcCCCcchhhcCccccCC
Confidence 57899999986545664443322100 0112222211 2222221 111 1333444544 566666
Q ss_pred C-------------CCCCCcccccchh-hcccccccCCCccccCcccchhhhhhcCCCCCccEEEeecCccccccchhcc
Q 040876 127 P-------------SLASREDQDLLSN-IRQRLSKCRTGAKSSQEISDIFDIFSGCVSKGLEILVLRSSSISGHLTEQIG 192 (343)
Q Consensus 127 ~-------------~l~~L~~L~l~~n-l~~~l~~~~~~~~~~~~~~~ip~~l~~l~~~~L~~L~L~~n~l~~~~p~~l~ 192 (343)
. .+++|+.|+|++| +.+ +..+|..+..+ ++|++|+|++|.+++. ..+.
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~--------------l~~l~~~~~~l--~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYR--------------LDDMSSIVQKA--PNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCC--------------CGGGTTHHHHS--TTCCEEECTTSCCCSG--GGGG
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCC--------------CccchhHHhhC--CCCCEEECCCCccCCc--hhhh
Confidence 4 4778888888888 762 13667788889 9999999999999964 3344
Q ss_pred CCC--CCCEEECcCCcccccCCc-------cccCCCCCcEEE
Q 040876 193 HFK--NLDTLDLGNNSIVGLVPL-------SLNELSKLRILH 225 (343)
Q Consensus 193 ~l~--~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ 225 (343)
.+. +|++|+|++|.+.+.+|. .+..+++|+.||
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 444 999999999999987763 367899999986
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.3e-06 Score=68.85 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=58.6
Q ss_pred CCccEEEeecCccccccchhccCCCCCCEEECcCCc-ccccCCccccCC----CCCcEEEccCcc-CccccChHhhhcCC
Q 040876 171 KGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNS-IVGLVPLSLNEL----SKLRILHLSDNK-LNGTLSEIHFVNLT 244 (343)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~l~~N~-l~g~~p~~~~~~l~ 244 (343)
.+|++||++++.++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|++++|. ++..--. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 478999999988886656667888889999998884 665444445554 368888888874 6632112 456677
Q ss_pred CCCeEEecCc
Q 040876 245 KLSVFSVNEN 254 (343)
Q Consensus 245 ~L~~L~l~~n 254 (343)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 8888777765
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.87 E-value=0.00026 Score=65.39 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=96.4
Q ss_pred cccCCCCCCEecCCCCC---------CCCCCcccccchhhcc----cccccCC-Ccc-ccCcccchhhhhhcCCCCCccE
Q 040876 111 WLYRLTHLEQLSVADRP---------SLASREDQDLLSNIRQ----RLSKCRT-GAK-SSQEISDIFDIFSGCVSKGLEI 175 (343)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~nl~~----~l~~~~~-~~~-~~~~~~~ip~~l~~l~~~~L~~ 175 (343)
.+.++++|+.+.+.++. .+.+|+.+++..++.. .+..|.. ..+ ++.....+.+..... ..|+.
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~--~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSK--TGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT--CCCCE
T ss_pred hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhccc--CCCce
Confidence 35666777777776543 3455666666555211 0111110 000 111111222222333 45555
Q ss_pred EEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCce
Q 040876 176 LVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENN 255 (343)
Q Consensus 176 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~ 255 (343)
+.+... ++..-...+..+..|+.+.+..+... .....+..+..++.+....+. ++...|..+.+|+.+.+..+
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-
T ss_pred EEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-
Confidence 555432 22122234555566666666555332 333445556666666554432 33335556666666665432
Q ss_pred eeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCc
Q 040876 256 LTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLR 331 (343)
Q Consensus 256 l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~ 331 (343)
++..-...+..+ +|+.+++..+ ++...... +.+|+.+++..+ ++... ...|..+.+|+
T Consensus 308 ------------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~ 369 (394)
T 4fs7_A 308 ------------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG----ANAFQGCINLK 369 (394)
T ss_dssp ------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC----TTTBTTCTTCC
T ss_pred ------------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh----HHHhhCCCCCC
Confidence 221222334444 7777777543 33222222 567777777655 43221 24566777777
Q ss_pred eEecCCC
Q 040876 332 ALSLGDN 338 (343)
Q Consensus 332 ~L~ls~N 338 (343)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 7777554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=1.3e-05 Score=65.39 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=54.0
Q ss_pred hhhhcCCCCCccEEEeecCc-cccccchhccCC----CCCCEEECcCCc-ccccCCccccCCCCCcEEEccCcc-Cc
Q 040876 163 DIFSGCVSKGLEILVLRSSS-ISGHLTEQIGHF----KNLDTLDLGNNS-IVGLVPLSLNELSKLRILHLSDNK-LN 232 (343)
Q Consensus 163 ~~l~~l~~~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~-l~ 232 (343)
..+.++ ++|++|+|++|. ++..--..++.+ ++|++|++++|. +|..--..+.++++|++|+++++. ++
T Consensus 79 ~~L~~~--~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 79 DHMEGL--QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGTTC--SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCC--CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 446778 999999999995 776555566665 479999999984 876655678889999999999985 44
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.65 E-value=0.0022 Score=59.13 Aligned_cols=215 Identities=16% Similarity=0.132 Sum_probs=111.6
Q ss_pred cccCCCCCCEecCCCCC---------CCCCCcccccchhhcc----cccccCCCcc-ccCcccch-hhhhhcCCCCCccE
Q 040876 111 WLYRLTHLEQLSVADRP---------SLASREDQDLLSNIRQ----RLSKCRTGAK-SSQEISDI-FDIFSGCVSKGLEI 175 (343)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~---------~l~~L~~L~l~~nl~~----~l~~~~~~~~-~~~~~~~i-p~~l~~l~~~~L~~ 175 (343)
.+.++++|+.+++..+- .+.+|+.+.+..++.. .+..|..... .......+ ...|.++ ++|+.
T Consensus 89 aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c--~~L~~ 166 (394)
T 4fs7_A 89 AFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATC--ESLEY 166 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTC--TTCCE
T ss_pred HhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhccc--CCCcE
Confidence 47788889988886543 3445666665554211 1222222111 11111222 2457778 88888
Q ss_pred EEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCc-c-------------------cc
Q 040876 176 LVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLN-G-------------------TL 235 (343)
Q Consensus 176 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-g-------------------~~ 235 (343)
+.+..+. ...-...|.++.+|+.+.+..+ ++..-...+.++..|+.+.+..+... + .+
T Consensus 167 i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i 244 (394)
T 4fs7_A 167 VSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTEL 244 (394)
T ss_dssp EECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEE
T ss_pred EecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceec
Confidence 8887654 3234456778888888888766 44233445667777777766554321 0 11
Q ss_pred ChHhhhcCCCCCeEEecCceee-----------EeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CC
Q 040876 236 SEIHFVNLTKLSVFSVNENNLT-----------LKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SS 300 (343)
Q Consensus 236 p~~~~~~l~~L~~L~l~~n~l~-----------l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~ 300 (343)
....+..+..++.+.+..+..+ ++.+....+.+ ....+... +|+.+.+..+ ++...... +.
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCC
Confidence 1112333344444444333221 11111111111 01122233 6777777654 33222222 57
Q ss_pred CCcEEEccCCccccccCchhhccCCccccCceEecCCC
Q 040876 301 NLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 301 ~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
+|+.+++.++ ++... ...|.++.+|+.+++..|
T Consensus 321 ~L~~i~lp~~-v~~I~----~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIG----KRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCCEECCCTT-CCEEC----TTTTTTCTTCCEECCCTT
T ss_pred CCCEEEeCCc-ccEEh----HHhccCCCCCCEEEECcc
Confidence 8888888644 44322 246778889999988765
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=1.5e-05 Score=66.20 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=75.0
Q ss_pred cccCCCCCcEEEccCc-cCccc----cChHhhhcCCCCCeEEecCceeeEeEEeccCCcccc----cCCCccccc-CCCe
Q 040876 214 SLNELSKLRILHLSDN-KLNGT----LSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIHG----EMTNLTNAT-QLWY 283 (343)
Q Consensus 214 ~l~~l~~L~~L~l~~N-~l~g~----~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~----~~~~~~~~~-~L~~ 283 (343)
.+.+-+.|++|+|++| .+... +.. .+..-+.|+.|+|++|. |.. .+...+... .|++
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~------------igd~ga~alA~aL~~N~tL~~ 102 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTA------------ISDSEARGLIELIETSPSLRV 102 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSC------------CBHHHHTTHHHHHHHCSSCCE
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCC------------CChHHHHHHHHHHhcCCccCe
Confidence 3455678999999985 77522 222 44555677776666654 433 223333334 8999
Q ss_pred EeCcCCcccCccccc-------CCCCcEEEccCC---ccccccCchhhccCCccccCceEecCCCcc
Q 040876 284 LRLHSNNFSGPLSLI-------SSNLVYLDLFNN---SFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 284 L~Ls~N~l~~~~~~~-------~~~L~~L~Ls~N---~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
|+|++|.|+...... -+.|++|+|++| .+.......+.+.+...+.|+.|+++.|.+
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 999999997532211 356999999865 455554456677777888999999988764
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.53 E-value=0.0014 Score=60.36 Aligned_cols=127 Identities=12% Similarity=0.134 Sum_probs=63.0
Q ss_pred hccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcCCCCCeEEecCceeeEeEEeccCCccc
Q 040876 190 QIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNLTKLSVFSVNENNLTLKFLDLGENQIH 269 (343)
Q Consensus 190 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~ 269 (343)
.|..+..|+.+.+..+..+ .-...+.++++|+.+.+. +.++ .++...|.++.+|+.+.+..+ ++
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-------------v~ 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-------------IT 323 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-------------CC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-------------cc
Confidence 3455566666666544332 223345566666666664 3343 555556666666666666532 22
Q ss_pred ccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccccccCchhhccCCccccCceEecCCCcc
Q 040876 270 GEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFLGSISHFWCYRSNETKRLRALSLGDNYL 340 (343)
Q Consensus 270 ~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N~l 340 (343)
..-...+..+ +|+.+.+..+ ++...... +.+|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC----------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCCCCE
Confidence 1223344444 7788877644 43322222 6778888877765321 3345566777777766644
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.0002 Score=59.37 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=63.8
Q ss_pred hhcCCCCCeEEecCceeeEeEEeccCCcccc----cCCCccccc-CCCeEeCcCCcccCccccc-------CCCCcEEEc
Q 040876 240 FVNLTKLSVFSVNENNLTLKFLDLGENQIHG----EMTNLTNAT-QLWYLRLHSNNFSGPLSLI-------SSNLVYLDL 307 (343)
Q Consensus 240 ~~~l~~L~~L~l~~n~l~l~~L~ls~n~l~~----~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~-------~~~L~~L~L 307 (343)
+.+-+.|++|++++| |+|.. .+...+... .|+.|+|++|++....... -+.|+.|+|
T Consensus 37 l~~n~~L~~L~L~~n-----------n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 37 REDDTDLKEVNINNM-----------KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HTTCSSCCEEECTTC-----------CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HhcCCCccEEECCCC-----------CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 344566777666543 14432 122333333 8999999999998533322 478999999
Q ss_pred cCCccccccCchhhccCCccccCceEecCCC
Q 040876 308 FNNSFLGSISHFWCYRSNETKRLRALSLGDN 338 (343)
Q Consensus 308 s~N~l~~~~~~~l~~~l~~l~~L~~L~ls~N 338 (343)
++|.|++.....+.+.+...+.|+.|+|++|
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 9999999887888889999999999999865
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.85 E-value=0.0041 Score=57.27 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=84.1
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.|.++ ..|+.+.+..+... .....+.+++.|+.+.+.. .++..-...|.++.+|+.+.+..+ ++ .+....|.++
T Consensus 260 aF~~c--~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSC--AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC 333 (394)
T ss_dssp TTTTC--SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred eeeec--ccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence 56677 88999988765443 4456688899999999964 455344457888999999999865 55 6777789999
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCcccccCCCCcEEEccCCcc
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLISSNLVYLDLFNNSF 312 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~L~~L~Ls~N~l 312 (343)
.+|+.+.+..+ ++..-...+..+ +|+.+++.++......-....+|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-------------v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-------------VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-------------CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCEEEECcc-------------cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 99999888643 222223445555 899999988765422112256777777765543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0023 Score=49.34 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=29.7
Q ss_pred EEeccCCccc-ccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCCccc
Q 040876 260 FLDLGENQIH-GEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNNSFL 313 (343)
Q Consensus 260 ~L~ls~n~l~-~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N~l~ 313 (343)
.++.+++.++ ..+|.. .. +|++|+|++|+|+...+.. +++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555566665 233422 22 5677777777776544433 556677777777654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.72 E-value=0.0062 Score=55.60 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+.++ ..|+.+.+..+ ++..-...+.++..|+.+.+..+ +...-...+..+++|+.+.+.++.++ .++...|.++
T Consensus 235 ~f~~~--~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c 309 (379)
T 4h09_A 235 AFYGM--KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDC 309 (379)
T ss_dssp TTTTC--SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTC
T ss_pred cccCC--ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCC
Confidence 44556 67777777554 44333445666777777777543 33233345666777777777776665 5666567777
Q ss_pred CCCCeEEecC
Q 040876 244 TKLSVFSVNE 253 (343)
Q Consensus 244 ~~L~~L~l~~ 253 (343)
.+|+.+.+..
T Consensus 310 ~~L~~i~lp~ 319 (379)
T 4h09_A 310 VKLSSVTLPT 319 (379)
T ss_dssp TTCCEEECCT
T ss_pred CCCCEEEcCc
Confidence 7777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0075 Score=46.37 Aligned_cols=36 Identities=33% Similarity=0.429 Sum_probs=16.8
Q ss_pred CCCEEECcCCcccccCCccccCCCCCcEEEccCccC
Q 040876 196 NLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKL 231 (343)
Q Consensus 196 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 231 (343)
+|++|+|++|+|+..-+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555432233344445555555555444
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.28 E-value=0.028 Score=51.21 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=80.5
Q ss_pred hhhcCCCCCccEEEeecCccccccchhccCCCCCCEEECcCCcccccCCccccCCCCCcEEEccCccCccccChHhhhcC
Q 040876 164 IFSGCVSKGLEILVLRSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLSDNKLNGTLSEIHFVNL 243 (343)
Q Consensus 164 ~l~~l~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~l 243 (343)
.+..+ ..++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ ++ .++...|.++
T Consensus 212 ~f~~~--~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c 285 (379)
T 4h09_A 212 GFSYG--KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGC 285 (379)
T ss_dssp TTTTC--SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTC
T ss_pred ccccc--cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccc
Confidence 44555 77888877654 33344456778888998888765 44344456777888888888654 44 5666678888
Q ss_pred CCCCeEEecCceeeEeEEeccCCcccccCCCccccc-CCCeEeCcCCcccCccccc---CCCCcEEEccCC
Q 040876 244 TKLSVFSVNENNLTLKFLDLGENQIHGEMTNLTNAT-QLWYLRLHSNNFSGPLSLI---SSNLVYLDLFNN 310 (343)
Q Consensus 244 ~~L~~L~l~~n~l~l~~L~ls~n~l~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~---~~~L~~L~Ls~N 310 (343)
++|+.+.+.++.+ +..-...+..+ +|+.+++..+ ++...... +.+|+.+.+..+
T Consensus 286 ~~L~~i~l~~~~i------------~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 286 SNLTKVVMDNSAI------------ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEEECCTTC------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccc------------ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8888887765433 22223345454 7888888654 33222222 566777766543
Done!