BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040877
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9B4U5|Y3030_HERA2 Probable transcriptional regulatory protein Haur_3030
OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=Haur_3030 PE=3 SV=1
Length = 252
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 39 KKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDN--CNHLFIAFDLYS---- 91
+++ QR T + R T REGGG+P+ N ++ I KA DN +++ A D +
Sbjct: 19 QRRGQRWTKIARDITIAAREGGGSPDMNFRLRLAIEKAKADNMPADNIQRAIDRGTGVSG 78
Query: 92 ----EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVL------SFCY 141
E V Y G + V + D N V +IRT K G L + +
Sbjct: 79 EAALEEVTYEGYGPGGIAVIVDAATDNRNRTV----SEIRTAFNKNGGTLGEGGSVGWMF 134
Query: 142 KLKGM-TIKKGEIPSPEVCLSPGIHSSKEKV 171
+KG+ +I + E P+ I + + V
Sbjct: 135 DIKGLISIDRTEKTDPDEVTLLAIDADADDV 165
>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2
Length = 2048
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 62 NPEWNHMMKFDIKAF-VDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVR 120
NP WN +++FD++ +D+ + L I + I + IG V LKDLI + N ++
Sbjct: 43 NPVWNEILEFDLRGIPLDSSSSLVIVVKDFE--TIGQNKLIGTATVSLKDLIGDQNRSLP 100
Query: 121 FVRYQIRTGHGKPNGV 136
+ + + G+ G
Sbjct: 101 YKQTSLLNEKGQDTGA 116
>sp|Q5QYV3|Y1088_IDILO Probable transcriptional regulatory protein IL1088 OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=IL1088 PE=3 SV=1
Length = 249
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 46 TCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNCNHLFI-------AFDLYSEGV--- 94
T L R+ T + REGGG+PE N ++ I KA +N I + DL + V
Sbjct: 26 TKLIREITVSAREGGGDPETNPRLRAAIDKALSNNMKRDTIDTAVKRGSGDLEGDNVDEL 85
Query: 95 -IYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT--GHGKPNGVLSFCYKLKGMTIKKG 151
GY G V V L+ + D N V VR+ G+ +G +++ + KG+ I
Sbjct: 86 TYEGYGPSG-VAVLLECMTDNRNRTVSDVRHAFSKLGGNLGTDGSVAYLFNKKGV-ISYS 143
Query: 152 EIPSPEVCLSPGIHSSKEKV-NYPCIEVDDLSSP---GICYPPLD 192
+ + E + P + + E + Y +D ++SP G LD
Sbjct: 144 DGVTEEQVMEPALEAGAEDILAYDEGSIDVITSPENFGAVKDALD 188
>sp|C0QT62|Y079_PERMH Probable transcriptional regulatory protein PERMA_0079
OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=PERMA_0079 PE=3 SV=1
Length = 250
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 40 KKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF------VDNCNHLFIAFDLYSEG 93
K+ Q T + R+ T R+GGG+PE+N ++ I+ V+N EG
Sbjct: 20 KRGQMFTKIIREITVAARQGGGDPEFNPRLRIAIEKAKKANMPVENIERAIKRGTGELEG 79
Query: 94 VIY------GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG---KPNGVLSFCYKLK 144
V Y GY G V + ++ L D N VR+ I T HG +G +SF ++ K
Sbjct: 80 VSYEEVVYEGYGPEG-VAIIVECLTDNRNRTTGEVRH-IFTKHGGNLGSSGCVSFLFEEK 137
Query: 145 GMTIKKGEIPSPEVCLSPGIHSSKEKV 171
G+ + + E I + E V
Sbjct: 138 GVILVPKDKYDEETVFEKAIEAGAEDV 164
>sp|B4U3E1|PYRF_STREM Orotidine 5'-phosphate decarboxylase OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=pyrF PE=3 SV=1
Length = 230
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 124 YQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIH 165
Y RT K +GV+ +++K + K E+P+ VCL+PGI
Sbjct: 141 YAKRTAQAKLDGVVCSAHEVKAI---KSEVPAGFVCLTPGIR 179
>sp|C0M7X0|PYRF_STRE4 Orotidine 5'-phosphate decarboxylase OS=Streptococcus equi subsp.
equi (strain 4047) GN=pyrF PE=3 SV=1
Length = 230
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 124 YQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIH 165
Y RT K +GV+ +++K + K E+P+ VCL+PGI
Sbjct: 141 YAKRTAQAKLDGVVCSAHEVKAI---KSEVPAGFVCLTPGIR 179
>sp|Q03362|YD476_YEAST Uncharacterized protein YDR476C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDR476C PE=1 SV=1
Length = 224
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 169 EKVNYPCIEVDDLSSPGICYPPLDYVYSP-LPGFYSPPPN 207
+ V YPC VD L G+ PPL Y+Y P L + PN
Sbjct: 105 DTVEYPCTLVDLLILVGVALPPLCYLYRPALHAIFFLVPN 144
>sp|P28784|CPG1_PORGN Gingipain R1 OS=Porphyromonas gingivalis GN=rgpA PE=1 SV=2
Length = 991
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 88 DLYSEGVI------YGYRSIGKVHVP---LKDLIDEFNGAVRFVRYQIRTGHG 131
D+ E VI YGY I K + P K++ID FNG + V Y TGHG
Sbjct: 390 DIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNY---TGHG 439
>sp|Q189Y9|Y795_CLOD6 Probable transcriptional regulatory protein CD630_07950
OS=Clostridium difficile (strain 630) GN=CD630_07950
PE=3 SV=1
Length = 239
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 17/155 (10%)
Query: 32 SIINGELKKKEQRQTCL---QRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNCNHLFIAF 87
+IIN + K+ QR R +EGG +PE+N +K I KA DN + I
Sbjct: 6 NIINRKGKQDAQRAKIFTKHARAIAVAAKEGGADPEYNAALKTAIEKAKADNMPNDNIDR 65
Query: 88 DLYS----------EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNG 135
+ E ++Y G V V ++ L D N VRY G +G
Sbjct: 66 AIAKGAGAGAGEDYETIVYEGYGPGGVAVIVETLTDNKNRTAGNVRYYFDKNGGNLGTSG 125
Query: 136 VLSFCYKLKG-MTIKKGEIPSPEVCLSPGIHSSKE 169
+SF + KG + + G+ S E + + + E
Sbjct: 126 CVSFMFDKKGQILVGLGDGVSEEELMDVALEAGAE 160
>sp|Q1AWE6|Y1318_RUBXD Probable transcriptional regulatory protein Rxyl_1318
OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129) GN=Rxyl_1318 PE=3 SV=1
Length = 250
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 38/161 (23%)
Query: 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGG 61
+WST++ K D K LF +LS R T REGGG
Sbjct: 6 KWSTIKRK-KGAMDAKRGALFAKLS-----------------------RAITVAAREGGG 41
Query: 62 NPEWNHMMKFDIKAFVDN---CNHLFIAFDLYS---------EGVIYGYRSIGKVHVPLK 109
+PE N + ++ D +++ A D + E + Y + G V V ++
Sbjct: 42 DPEANPALALAVQKAKDANMPNDNIQRAIDRGTGAGSEAGDYEHITYEGYAPGGVAVMVE 101
Query: 110 DLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKLKGMTI 148
L D N A +RY GK +G +++ ++ KG+ +
Sbjct: 102 VLTDNRNRAASDIRYIFSKHGGKLGTSGSVAYLFERKGVVL 142
>sp|Q04018|YM79_YEAST Uncharacterized protein YMR244W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR244W PE=3 SV=1
Length = 355
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 132 KPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSKEKVNYPCIEVDDLSSPGICYPPL 191
KPN +CY KG I K S +V + E + P + V S + P
Sbjct: 125 KPNSDKDYCYDGKGTVIAKNNANSGDVAFCQTVLPGNEAMLIPTL-VGSGSKQTLAVPGT 183
Query: 192 DYVYSPLPGFYSPPPNYQYEATRGYGTTLPPLSPVQVSSLMVASGSHYHPCPSPYVKSPW 251
DY S +Y P E +G++ P Q + +GS+ + +VK W
Sbjct: 184 DYWASSASHYYVNAPGVSVEDACQWGSSANP----QGNWAPFVAGSNMDDNQNTFVKIGW 239
>sp|Q5BAZ5|INO80_EMENI Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ino80
PE=3 SV=1
Length = 1612
Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 189 PPLDYVYSPLPGFYSP------------PPNYQYEATRGYGTTLPPLSPVQVSSLMVASG 236
P + SPLPG P P+ QY+A GT PL SL+ ASG
Sbjct: 57 PHYSHAPSPLPGALPPLNGGAPTPAHPSDPSPQYQAHSAAGTPQYPLPRPYSGSLLPASG 116
Query: 237 SHYHPCPSPYVKSPWPWQHVQSTGYANAHDLSVHPVSDGSEH 278
+ SPY S H S ++AH V P + H
Sbjct: 117 T------SPYGPSTPSHAHPSSRPDSHAH---VSPKKEPESH 149
>sp|A8MHN6|Y1778_ALKOO Probable transcriptional regulatory protein Clos_1778
OS=Alkaliphilus oremlandii (strain OhILAs) GN=Clos_1778
PE=3 SV=1
Length = 240
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 40 KKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNC--NHLFIAF--------- 87
KK + T L R + REGGG+ E+N +K I KA + N +++ A
Sbjct: 17 KKAKIYTKLARVISVAAREGGGDVEYNAALKNAIDKAKLQNMPNDNIDRAIKKGTGEGGS 76
Query: 88 DLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKLKG 145
D Y E V GY G V V ++ L D N VR+ G G +SF + KG
Sbjct: 77 DQYEEIVYEGYGPSG-VAVIVEVLTDNRNRTAGDVRHAFDKNGGNLGSTGCVSFMFDKKG 135
Query: 146 MTIKKGEIPSPEVCL 160
I + E E L
Sbjct: 136 QIIIEKEDHIDEETL 150
>sp|Q3B8H2|TOIPA_XENLA Toll-interacting protein A OS=Xenopus laevis GN=tollip-a PE=2 SV=1
Length = 269
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 39/197 (19%)
Query: 52 KTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111
+TPT G NP WN +++ I VD+ +++ E I H+ + +
Sbjct: 87 ETPTAHNGAKNPRWNKVIQCTIPPGVDS-----FYLEIFDERAFSMDDRIAWTHITIPET 141
Query: 112 IDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSK 168
+ E + R G G N V+S+ T +P+ V L P ++
Sbjct: 142 LKEGKHVDEWFSLSGRQGDDKEGMINLVMSY-------TSVPAMMPAQPVVLMPTVYQQ- 193
Query: 169 EKVNYPCIEVDDLSSPGICYPPLDY-VYSP-LPGFYSPP---PNYQYEAT--RGYGTTLP 221
G+ Y P+ VY+P +P SPP P +Q + + P
Sbjct: 194 ----------------GVGYVPIAGPVYNPGMPMIASPPAVNPQHQTQEVDIQSIKDMFP 237
Query: 222 PLSPVQVSSLMVASGSH 238
+ P + S++ A G +
Sbjct: 238 TIDPEVIRSVLEAQGGN 254
>sp|Q5ZK05|TOLIP_CHICK Toll-interacting protein OS=Gallus gallus GN=TOLLIP PE=2 SV=1
Length = 274
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 52 KTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111
+TPT G NP WN +++ + VD+ +++ E I H+ + +
Sbjct: 87 ETPTAHNGAKNPRWNKVIQCTVPPGVDS-----FYLEIFDERAFSMDDRIAWTHITIPES 141
Query: 112 IDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKGMTIKKGEIPSPEVCLSPGIHSSK 168
+ + N + R G G N V+S+ M ++ P P V L P ++ +
Sbjct: 142 LKQGNVEDEWYSLSGRQGDDKEGMINLVMSYTSLPAAMMMQ----PQP-VVLMPTVY--Q 194
Query: 169 EKVNYPCIEVDDLSSPGICYPPLDYVYSPLPGF 201
+ V Y I P +C P + V P P
Sbjct: 195 QGVGYVPIA----GMPAVCNPDMVPVAIPPPAV 223
>sp|Q6NXH2|MANEA_MOUSE Glycoprotein endo-alpha-1,2-mannosidase OS=Mus musculus GN=Manea
PE=2 SV=1
Length = 462
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 96 YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133
Y R +H +K +ID++ F RY+ RTGH P
Sbjct: 226 YSNRDDQNMHQNIKYIIDKYGNHPAFYRYKTRTGHSLP 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,357,568
Number of Sequences: 539616
Number of extensions: 5520446
Number of successful extensions: 11366
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 11024
Number of HSP's gapped (non-prelim): 289
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)