Query 040877
Match_columns 281
No_of_seqs 175 out of 1127
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-25 2.6E-30 185.5 14.0 119 3-143 1-121 (121)
2 cd04051 C2_SRC2_like C2 domain 99.9 5.4E-25 1.2E-29 178.9 13.4 123 5-139 1-125 (125)
3 cd08681 C2_fungal_Inn1p-like C 99.9 3.7E-23 8E-28 166.2 12.8 118 4-143 1-118 (118)
4 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.9E-22 4.2E-27 171.6 13.7 124 5-145 1-133 (150)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 3.9E-22 8.5E-27 161.6 14.7 120 5-145 1-121 (121)
6 cd08682 C2_Rab11-FIP_classI C2 99.9 4.7E-22 1E-26 162.4 13.7 122 6-142 1-126 (126)
7 cd04022 C2A_MCTP_PRT_plant C2 99.9 1E-21 2.2E-26 160.7 14.2 123 5-144 1-126 (127)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 2.7E-21 5.9E-26 158.4 14.6 128 5-144 1-133 (133)
9 cd04044 C2A_Tricalbin-like C2 99.9 2.1E-21 4.6E-26 156.3 13.4 122 4-145 2-124 (124)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 3.8E-21 8.2E-26 159.8 14.1 113 5-139 1-125 (126)
11 cd08377 C2C_MCTP_PRT C2 domain 99.9 9.5E-21 2.1E-25 151.9 14.4 117 4-144 1-119 (119)
12 cd04036 C2_cPLA2 C2 domain pre 99.9 7.8E-21 1.7E-25 153.6 13.7 116 6-143 2-117 (119)
13 cd08375 C2_Intersectin C2 doma 99.9 1.4E-20 3.1E-25 157.3 14.8 120 3-143 14-135 (136)
14 cd08395 C2C_Munc13 C2 domain t 99.9 8.7E-21 1.9E-25 156.4 13.3 112 5-128 1-112 (120)
15 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.4E-20 7.4E-25 152.4 14.7 119 3-145 3-124 (126)
16 cd04015 C2_plant_PLD C2 domain 99.8 3.1E-20 6.6E-25 159.1 14.7 119 4-144 7-158 (158)
17 cd08678 C2_C21orf25-like C2 do 99.8 5.2E-20 1.1E-24 150.6 15.1 118 6-145 1-121 (126)
18 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.2E-20 7E-25 151.9 12.9 116 6-144 2-120 (121)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 6.5E-20 1.4E-24 150.1 14.7 118 5-143 1-121 (121)
20 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.3E-20 9.3E-25 149.8 13.1 117 5-142 1-123 (123)
21 cd08381 C2B_PI3K_class_II C2 d 99.8 2.6E-20 5.6E-25 152.7 11.4 109 3-126 12-121 (122)
22 cd04014 C2_PKC_epsilon C2 doma 99.8 1.1E-19 2.3E-24 149.6 14.9 120 1-145 1-130 (132)
23 cd04049 C2_putative_Elicitor-r 99.8 7.1E-20 1.5E-24 148.8 13.2 98 4-115 1-98 (124)
24 cd04024 C2A_Synaptotagmin-like 99.8 7.6E-20 1.6E-24 148.2 13.3 122 4-143 1-128 (128)
25 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.3E-19 2.9E-24 145.1 14.5 115 5-144 1-115 (116)
26 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.3E-19 2.8E-24 147.7 14.1 118 5-142 1-120 (121)
27 cd08392 C2A_SLP-3 C2 domain fi 99.8 6E-20 1.3E-24 152.3 12.2 113 3-126 14-127 (128)
28 cd08373 C2A_Ferlin C2 domain f 99.8 1.5E-19 3.3E-24 147.6 14.3 115 10-145 2-117 (127)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 4.4E-20 9.5E-25 152.3 10.9 97 3-114 13-109 (118)
30 cd08382 C2_Smurf-like C2 domai 99.8 1.6E-19 3.4E-24 147.5 13.7 116 5-141 1-122 (123)
31 cd04046 C2_Calpain C2 domain p 99.8 1.8E-19 3.9E-24 147.7 14.0 118 3-145 2-123 (126)
32 KOG1030 Predicted Ca2+-depende 99.8 5.2E-20 1.1E-24 159.4 10.9 94 3-115 5-98 (168)
33 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.3E-19 4.9E-24 147.7 12.3 110 3-126 14-124 (125)
34 cd04017 C2D_Ferlin C2 domain f 99.8 4.8E-19 1E-23 146.8 13.8 127 5-146 2-134 (135)
35 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.9E-19 4.1E-24 147.8 11.2 110 3-126 14-124 (125)
36 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4E-19 8.6E-24 142.4 12.8 115 4-143 1-121 (121)
37 cd00275 C2_PLC_like C2 domain 99.8 1.6E-18 3.5E-23 140.1 15.8 122 4-143 2-127 (128)
38 cd04039 C2_PSD C2 domain prese 99.8 4E-19 8.6E-24 143.2 11.7 95 4-115 1-99 (108)
39 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.9E-19 1.5E-23 142.7 12.1 108 3-126 15-122 (124)
40 cd04040 C2D_Tricalbin-like C2 99.8 9.6E-19 2.1E-23 139.7 12.7 114 6-139 1-114 (115)
41 cd04030 C2C_KIAA1228 C2 domain 99.8 7.4E-19 1.6E-23 142.7 12.1 110 3-126 15-126 (127)
42 cd08691 C2_NEDL1-like C2 domai 99.8 2.6E-18 5.6E-23 144.7 15.7 128 5-141 2-136 (137)
43 cd04043 C2_Munc13_fungal C2 do 99.8 2.2E-18 4.8E-23 139.9 14.7 121 5-145 2-122 (126)
44 cd08685 C2_RGS-like C2 domain 99.8 6.2E-19 1.3E-23 144.2 11.5 108 3-126 11-119 (119)
45 cd04011 C2B_Ferlin C2 domain s 99.8 6.3E-19 1.4E-23 141.0 11.2 106 5-128 5-110 (111)
46 cd08688 C2_KIAA0528-like C2 do 99.8 5.3E-19 1.1E-23 141.6 10.8 107 6-128 1-109 (110)
47 cd04021 C2_E3_ubiquitin_ligase 99.8 2.3E-18 5.1E-23 141.3 14.8 118 4-141 2-124 (125)
48 cd04050 C2B_Synaptotagmin-like 99.8 9.4E-19 2E-23 138.9 11.9 102 5-128 1-102 (105)
49 cd04041 C2A_fungal C2 domain f 99.8 8E-19 1.7E-23 140.8 11.2 99 4-114 1-100 (111)
50 cd08680 C2_Kibra C2 domain fou 99.8 6.7E-19 1.4E-23 145.7 10.9 101 3-113 13-113 (124)
51 cd04010 C2B_RasA3 C2 domain se 99.8 1E-18 2.2E-23 148.9 12.3 112 5-129 1-123 (148)
52 cd08521 C2A_SLP C2 domain firs 99.8 1.1E-18 2.4E-23 140.7 11.9 110 3-126 13-123 (123)
53 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.2E-18 2.5E-23 141.6 12.1 109 3-127 15-123 (124)
54 cd08388 C2A_Synaptotagmin-4-11 99.8 2.2E-18 4.7E-23 142.3 13.0 110 3-126 15-126 (128)
55 cd08389 C2A_Synaptotagmin-14_1 99.8 1.2E-18 2.6E-23 143.0 11.2 107 3-126 15-122 (124)
56 cd04028 C2B_RIM1alpha C2 domai 99.8 2.6E-18 5.7E-23 146.3 13.1 110 3-129 28-139 (146)
57 cd04045 C2C_Tricalbin-like C2 99.8 2.6E-18 5.6E-23 140.4 12.4 105 4-130 1-105 (120)
58 cd04027 C2B_Munc13 C2 domain s 99.8 5.1E-18 1.1E-22 139.3 13.6 113 5-141 2-127 (127)
59 cd04031 C2A_RIM1alpha C2 domai 99.8 2.7E-18 5.8E-23 138.8 11.2 109 3-126 15-124 (125)
60 cd08386 C2A_Synaptotagmin-7 C2 99.8 4.9E-18 1.1E-22 137.7 11.7 108 3-126 15-123 (125)
61 cd08406 C2B_Synaptotagmin-12 C 99.8 3.4E-18 7.4E-23 143.4 10.9 97 3-110 14-110 (136)
62 cd04009 C2B_Munc13-like C2 dom 99.8 4.8E-18 1E-22 140.5 11.4 106 3-115 15-120 (133)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 1.3E-17 2.8E-22 134.7 12.8 108 3-126 13-121 (123)
64 cd08384 C2B_Rabphilin_Doc2 C2 99.8 8E-18 1.7E-22 138.3 11.1 114 3-132 12-125 (133)
65 cd08407 C2B_Synaptotagmin-13 C 99.7 6.6E-18 1.4E-22 142.4 10.7 97 3-110 14-112 (138)
66 cd04038 C2_ArfGAP C2 domain pr 99.7 3.6E-17 7.7E-22 138.8 14.7 91 4-114 2-92 (145)
67 cd08404 C2B_Synaptotagmin-4 C2 99.7 5E-18 1.1E-22 140.5 8.4 117 3-135 14-130 (136)
68 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.5E-17 3.2E-22 137.3 10.9 98 2-110 12-109 (134)
69 cd00276 C2B_Synaptotagmin C2 d 99.7 4E-18 8.6E-23 138.9 7.3 115 2-132 12-126 (134)
70 cd08394 C2A_Munc13 C2 domain f 99.7 1.7E-17 3.7E-22 138.6 11.3 101 3-128 1-101 (127)
71 cd04018 C2C_Ferlin C2 domain t 99.7 1.4E-17 3E-22 142.4 10.8 94 5-115 1-108 (151)
72 cd08383 C2A_RasGAP C2 domain ( 99.7 3.8E-17 8.3E-22 130.4 12.4 115 5-143 1-117 (117)
73 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.9E-17 4.1E-22 136.9 10.9 98 3-111 14-111 (136)
74 cd08409 C2B_Synaptotagmin-15 C 99.7 2.1E-17 4.5E-22 138.0 11.0 98 3-112 14-111 (137)
75 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.7E-17 3.7E-22 137.2 10.4 98 3-111 14-111 (136)
76 cd08410 C2B_Synaptotagmin-17 C 99.7 2.4E-17 5.3E-22 137.0 11.3 96 3-109 13-108 (135)
77 cd04032 C2_Perforin C2 domain 99.7 2.3E-17 5E-22 137.3 11.1 93 3-113 27-119 (127)
78 PLN03008 Phospholipase D delta 99.7 3.6E-17 7.8E-22 169.5 14.5 123 4-148 14-181 (868)
79 cd08690 C2_Freud-1 C2 domain f 99.7 9.5E-17 2.1E-21 138.1 14.7 129 5-145 3-138 (155)
80 cd04035 C2A_Rabphilin_Doc2 C2 99.7 5.7E-17 1.2E-21 131.5 11.9 101 3-115 14-115 (123)
81 cd08408 C2B_Synaptotagmin-14_1 99.7 4.4E-17 9.6E-22 136.7 11.0 99 3-111 14-112 (138)
82 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.4E-17 9.6E-22 140.2 11.2 100 3-113 26-126 (162)
83 cd08692 C2B_Tac2-N C2 domain s 99.7 4.8E-17 1E-21 137.1 11.1 98 3-111 13-110 (135)
84 cd04052 C2B_Tricalbin-like C2 99.7 5.4E-17 1.2E-21 130.4 10.8 104 20-146 8-111 (111)
85 cd04026 C2_PKC_alpha_gamma C2 99.7 8.7E-17 1.9E-21 131.8 11.7 111 3-129 12-122 (131)
86 cd04013 C2_SynGAP_like C2 doma 99.7 7E-16 1.5E-20 131.6 15.1 118 4-147 11-142 (146)
87 cd04048 C2A_Copine C2 domain f 99.7 3.6E-16 7.8E-21 126.7 12.4 106 9-128 5-114 (120)
88 cd04037 C2E_Ferlin C2 domain f 99.7 2.5E-16 5.4E-21 129.1 10.9 93 5-113 1-93 (124)
89 cd08675 C2B_RasGAP C2 domain s 99.7 2.9E-16 6.3E-21 131.3 10.9 110 6-129 1-121 (137)
90 cd08686 C2_ABR C2 domain in th 99.7 8.4E-16 1.8E-20 126.9 13.4 84 6-109 1-91 (118)
91 PLN03200 cellulose synthase-in 99.7 2.9E-16 6.3E-21 174.6 11.6 119 4-145 1980-2101(2102)
92 PLN02223 phosphoinositide phos 99.6 2.6E-15 5.6E-20 150.1 14.5 121 4-143 409-534 (537)
93 cd08676 C2A_Munc13-like C2 dom 99.6 1.6E-15 3.4E-20 130.1 11.2 103 2-113 26-144 (153)
94 KOG1028 Ca2+-dependent phospho 99.6 1.9E-15 4.1E-20 148.1 13.1 127 3-145 166-295 (421)
95 cd04047 C2B_Copine C2 domain s 99.6 4.7E-15 1E-19 117.9 11.6 98 8-114 4-101 (110)
96 PF00168 C2: C2 domain; Inter 99.6 4E-15 8.6E-20 110.2 10.1 85 6-105 1-85 (85)
97 PLN02952 phosphoinositide phos 99.6 6.4E-15 1.4E-19 149.4 14.3 122 4-144 470-597 (599)
98 PLN02230 phosphoinositide phos 99.5 6.8E-14 1.5E-18 141.9 13.5 111 4-133 469-585 (598)
99 PLN02228 Phosphoinositide phos 99.5 1.9E-13 4.2E-18 138.0 15.3 123 4-145 431-562 (567)
100 PLN02222 phosphoinositide phos 99.5 1.7E-13 3.7E-18 138.8 14.4 111 4-133 452-568 (581)
101 KOG0169 Phosphoinositide-speci 99.5 1.2E-13 2.5E-18 141.4 12.7 121 5-143 617-743 (746)
102 PLN02270 phospholipase D alpha 99.5 2E-13 4.4E-18 141.6 14.0 122 4-146 8-150 (808)
103 smart00239 C2 Protein kinase C 99.5 3.7E-13 7.9E-18 100.9 11.4 96 5-115 1-96 (101)
104 KOG0696 Serine/threonine prote 99.5 4.3E-14 9.3E-19 137.9 6.9 110 3-128 179-288 (683)
105 COG5038 Ca2+-dependent lipid-b 99.4 8.8E-13 1.9E-17 139.6 12.3 132 3-155 435-568 (1227)
106 cd00030 C2 C2 domain. The C2 d 99.4 2.8E-12 6.1E-17 95.0 10.5 90 6-112 1-90 (102)
107 cd08374 C2F_Ferlin C2 domain s 99.4 3.3E-12 7.2E-17 107.5 10.7 100 5-115 1-125 (133)
108 KOG1028 Ca2+-dependent phospho 99.3 4.5E-12 9.7E-17 124.5 10.3 97 3-110 297-393 (421)
109 KOG1011 Neurotransmitter relea 99.3 2.9E-12 6.3E-17 129.5 7.2 116 4-143 295-423 (1283)
110 KOG1264 Phospholipase C [Lipid 99.3 1.4E-11 3E-16 126.8 10.9 106 4-128 1065-1171(1267)
111 cd08689 C2_fungal_Pkc1p C2 dom 99.2 5.3E-11 1.1E-15 96.9 7.8 87 6-115 1-90 (109)
112 COG5038 Ca2+-dependent lipid-b 99.2 5.6E-11 1.2E-15 126.2 10.0 122 3-145 1039-1162(1227)
113 KOG2059 Ras GTPase-activating 99.2 9.9E-11 2.2E-15 119.2 10.0 122 4-145 5-126 (800)
114 PLN02352 phospholipase D epsil 99.1 2.8E-10 6E-15 118.1 12.2 117 4-147 10-133 (758)
115 KOG1031 Predicted Ca2+-depende 99.0 2.7E-09 5.9E-14 107.4 9.8 126 3-144 2-136 (1169)
116 KOG1328 Synaptic vesicle prote 98.6 2.7E-08 5.8E-13 102.2 2.2 103 4-113 947-1049(1103)
117 KOG1013 Synaptic vesicle prote 98.5 1.3E-08 2.9E-13 96.6 -1.1 132 2-145 91-230 (362)
118 KOG0905 Phosphoinositide 3-kin 98.5 1.2E-07 2.6E-12 101.3 5.2 111 3-127 1523-1634(1639)
119 KOG1328 Synaptic vesicle prote 98.4 6.9E-08 1.5E-12 99.3 -0.2 131 6-145 116-302 (1103)
120 KOG1265 Phospholipase C [Lipid 98.3 2.9E-06 6.4E-11 88.9 8.9 109 4-135 703-812 (1189)
121 KOG2059 Ras GTPase-activating 98.2 3.9E-06 8.4E-11 86.3 7.6 123 9-145 136-277 (800)
122 KOG1013 Synaptic vesicle prote 98.0 8.5E-06 1.8E-10 77.8 5.3 94 4-108 233-326 (362)
123 KOG1011 Neurotransmitter relea 98.0 2.6E-05 5.6E-10 80.1 8.8 119 4-135 1125-1245(1283)
124 cd08683 C2_C2cd3 C2 domain fou 97.9 1.6E-05 3.6E-10 67.2 5.6 108 6-125 1-142 (143)
125 KOG3837 Uncharacterized conser 97.9 1E-05 2.3E-10 79.3 4.4 130 4-145 367-504 (523)
126 cd08684 C2A_Tac2-N C2 domain f 97.9 2.5E-05 5.3E-10 62.4 5.0 93 7-114 2-95 (103)
127 PLN02964 phosphatidylserine de 97.8 4.3E-05 9.3E-10 79.1 6.7 87 4-114 54-140 (644)
128 KOG1326 Membrane-associated pr 97.7 2E-05 4.4E-10 83.6 3.0 90 5-110 614-703 (1105)
129 PF10358 NT-C2: N-terminal C2 97.4 0.0084 1.8E-07 49.5 14.7 126 5-146 8-137 (143)
130 cd08693 C2_PI3K_class_I_beta_d 97.4 0.0013 2.7E-08 57.7 9.6 79 4-93 8-86 (173)
131 cd08398 C2_PI3K_class_I_alpha 97.3 0.0021 4.6E-08 55.7 10.0 93 4-109 8-104 (158)
132 cd08380 C2_PI3K_like C2 domain 97.3 0.0029 6.3E-08 53.7 10.7 97 4-110 8-106 (156)
133 PF15627 CEP76-C2: CEP76 C2 do 97.0 0.021 4.5E-07 49.7 12.6 129 4-145 9-151 (156)
134 cd04012 C2A_PI3K_class_II C2 d 96.9 0.0042 9.1E-08 54.0 7.6 114 4-143 8-134 (171)
135 cd08399 C2_PI3K_class_I_gamma 96.9 0.015 3.3E-07 51.4 11.2 128 4-145 10-139 (178)
136 KOG2060 Rab3 effector RIM1 and 96.7 0.0011 2.4E-08 64.5 3.3 110 4-129 269-380 (405)
137 KOG1326 Membrane-associated pr 96.5 0.00062 1.4E-08 72.7 -0.4 117 6-141 208-329 (1105)
138 KOG1327 Copine [Signal transdu 96.2 0.0091 2E-07 60.6 6.4 94 10-113 142-236 (529)
139 cd08397 C2_PI3K_class_III C2 d 96.2 0.034 7.5E-07 48.1 9.1 78 23-109 28-105 (159)
140 PF00792 PI3K_C2: Phosphoinosi 96.2 0.087 1.9E-06 44.1 11.1 78 26-111 3-85 (142)
141 PF14429 DOCK-C2: C2 domain in 96.1 0.37 8.1E-06 42.0 15.3 103 4-110 7-120 (184)
142 PF11618 DUF3250: Protein of u 95.9 0.065 1.4E-06 43.7 8.6 92 49-144 11-105 (107)
143 PF12416 DUF3668: Cep120 prote 95.4 0.15 3.3E-06 49.4 10.7 122 6-145 2-133 (340)
144 KOG1452 Predicted Rho GTPase-a 94.9 0.057 1.2E-06 52.1 6.1 79 3-100 50-130 (442)
145 smart00142 PI3K_C2 Phosphoinos 94.1 0.37 7.9E-06 38.3 8.2 80 5-93 12-91 (100)
146 KOG1329 Phospholipase D1 [Lipi 92.6 0.33 7.1E-06 52.2 7.2 102 25-146 138-242 (887)
147 cd08679 C2_DOCK180_related C2 92.3 0.44 9.6E-06 41.5 6.7 57 51-110 54-115 (178)
148 cd08687 C2_PKN-like C2 domain 92.2 1.5 3.2E-05 35.4 8.8 84 25-143 9-92 (98)
149 cd08695 C2_Dock-B C2 domains f 92.0 0.51 1.1E-05 42.3 6.7 59 49-110 53-113 (189)
150 cd08694 C2_Dock-A C2 domains f 91.0 0.69 1.5E-05 41.7 6.5 58 49-109 53-114 (196)
151 PF14924 DUF4497: Protein of u 88.0 2.2 4.8E-05 34.5 6.8 63 83-145 29-105 (112)
152 PF15625 CC2D2AN-C2: CC2D2A N- 87.7 2.5 5.4E-05 36.7 7.4 74 23-114 35-109 (168)
153 cd08696 C2_Dock-C C2 domains f 86.8 2.1 4.6E-05 38.0 6.5 59 49-110 54-118 (179)
154 PF14186 Aida_C2: Cytoskeletal 84.5 4.1 8.8E-05 35.2 6.9 101 4-114 13-115 (147)
155 cd08697 C2_Dock-D C2 domains f 82.9 4.3 9.4E-05 36.2 6.7 59 49-110 56-123 (185)
156 KOG0904 Phosphatidylinositol 3 76.7 11 0.00025 41.0 8.4 76 4-91 343-420 (1076)
157 PF07162 B9-C2: Ciliary basal 72.1 64 0.0014 27.8 10.7 91 7-108 5-101 (168)
158 KOG1924 RhoA GTPase effector D 66.5 28 0.0006 37.9 8.4 17 58-74 439-455 (1102)
159 PTZ00447 apical membrane antig 65.9 54 0.0012 32.6 9.7 97 24-142 73-171 (508)
160 KOG2419 Phosphatidylserine dec 64.0 0.86 1.9E-05 47.8 -3.0 74 8-110 284-361 (975)
161 KOG1327 Copine [Signal transdu 63.1 17 0.00036 37.5 6.0 95 16-115 2-106 (529)
162 KOG1924 RhoA GTPase effector D 61.5 27 0.00058 38.0 7.2 10 104-113 452-461 (1102)
163 KOG4269 Rac GTPase-activating 61.3 3.8 8.3E-05 44.5 1.1 59 3-75 758-816 (1112)
164 KOG3543 Ca2+-dependent activat 61.2 18 0.00039 38.4 5.8 81 5-107 342-425 (1218)
165 PF14909 SPATA6: Spermatogenes 58.7 89 0.0019 26.9 8.8 91 5-115 3-103 (140)
166 PF06219 DUF1005: Protein of u 47.0 2E+02 0.0044 29.2 10.3 73 83-156 95-183 (460)
167 PF02162 XYPPX: XYPPX repeat ( 41.1 21 0.00046 19.4 1.4 6 221-226 9-14 (15)
168 PF04234 CopC: CopC domain; I 37.2 1.9E+02 0.0041 22.5 7.0 36 103-142 60-97 (97)
169 cd05137 RasGAP_CLA2_BUD2 CLA2/ 36.1 48 0.001 33.0 4.2 43 100-145 1-45 (395)
170 PF12416 DUF3668: Cep120 prote 35.6 1.3E+02 0.0028 29.4 7.0 91 5-114 193-296 (340)
171 KOG0694 Serine/threonine prote 33.7 17 0.00038 38.5 0.7 51 24-93 27-77 (694)
172 KOG0906 Phosphatidylinositol 3 32.7 50 0.0011 35.3 3.8 45 63-108 77-121 (843)
173 KOG2391 Vacuolar sorting prote 26.1 92 0.002 30.7 4.1 11 203-213 146-156 (365)
174 PF14472 DUF4429: Domain of un 24.4 1.3E+02 0.0029 23.5 4.1 35 98-142 21-55 (94)
175 smart00686 DM13 Domain present 23.8 2.8E+02 0.006 22.6 6.0 85 8-107 11-102 (108)
176 PRK10301 hypothetical protein; 23.5 4.2E+02 0.0091 21.8 7.2 36 103-142 87-124 (124)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=1.2e-25 Score=185.47 Aligned_cols=119 Identities=18% Similarity=0.343 Sum_probs=101.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|+|+|+|++|++|++.+ ++++||||+|++++ +++||+++++++.||+|||+|.|.+.+..
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-------------~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----- 61 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-------------AVYETPTAYNGAKNPRWNKTIQCTLPEGV----- 61 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-------------EEEEeEEccCCCCCCccCeEEEEEecCCC-----
Confidence 378999999999999988 89999999999965 57899999888999999999999997532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh-hhcccCCceEEEEEEEEcCCCC-cceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD-LIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKL 143 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d-L~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f 143 (281)
..|.|+|+|++.+++|++||++.|+|.+ +..|. ....||.|...+|+ ..|.|+|+++|
T Consensus 62 ~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~---~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 62 DSIYIEIFDERAFTMDERIAWTHITIPESVFNGE---TLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred cEEEEEEEeCCCCcCCceEEEEEEECchhccCCC---CccccEeCcCccCCCCceEEEEEEeC
Confidence 3799999999999889999999999964 65543 34678888766655 67999999875
No 2
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.93 E-value=5.4e-25 Score=178.87 Aligned_cols=123 Identities=43% Similarity=0.766 Sum_probs=105.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|++|+..+.++++||||+|++.+. ++++|+++++++.||+|||+|.|.+....+..+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~------------~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS------------HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLA 68 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC------------cccccccccCCCCCCCCCCEEEEEcChHhcccCccE
Confidence 58999999999999988899999999999763 578999987789999999999999986421112358
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCC--ceEEEEEEEEcCCCCcceEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG--AVRFVRYQIRTGHGKPNGVLSF 139 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g--~~~~vsy~L~~~~GK~~G~L~L 139 (281)
|.|+|+|.+.+++|++||++.|+|.+++.+... .....+|+|++++||.+|+|+|
T Consensus 69 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred EEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 999999999878899999999999999987642 2568899999999999999986
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.90 E-value=3.7e-23 Score=166.25 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=100.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|+|++|+||++.+.++++||||+|.+.+ .++||+++++++.||+|||+|.|.+.... ..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~ 63 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-------------VTKKTKTDFRGGQHPEWDEELRFEITEDK----KP 63 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-------------CccccccccCCCCCCccCceEEEEecCCC----CC
Confidence 68999999999999999999999999999965 46789887777899999999999998632 24
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.|.|+|+|++.. +|++||++.++|.++..+.. ...||.|.+ +|+..|+|+|+++|
T Consensus 64 ~l~i~v~d~~~~-~~~~iG~~~~~l~~~~~~~~---~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 64 ILKVAVFDDDKR-KPDLIGDTEVDLSPALKEGE---FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred EEEEEEEeCCCC-CCcceEEEEEecHHHhhcCC---CCCcEEecc-CCcEeeEEEEEEEC
Confidence 899999999865 49999999999999987532 356778765 67899999999886
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.89 E-value=1.9e-22 Score=171.61 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=104.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.+|++||||+|.+++ +++||+++++++.||+|||+|.|.+.+... ..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-------------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~----~~ 63 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-------------QVLRTRPSQTRNGNPSWNEELMFVAAEPFE----DH 63 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-------------EEeeeEeccCCCCCCcccCcEEEEecCccC----Ce
Confidence 4899999999999999999999999999975 578999987667999999999999975321 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccC-CceEEEEEEEEcCCC--------CcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN-GAVRFVRYQIRTGHG--------KPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~-g~~~~vsy~L~~~~G--------K~~G~L~Lsl~f~p 145 (281)
|.|+|++.+.+++|++||++.|+|.++..+.. +.....||+|.+..| |.+|.|+|.+.|.+
T Consensus 64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 89999999877789999999999999987532 234578999987654 57799999999986
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.89 E-value=3.9e-22 Score=161.64 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=102.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||++.+.+. ...||++++ ++.||+|||+|.|.+.... ..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~------------~~~kT~~~~-~t~nP~Wne~f~f~v~~~~-----~~ 62 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGK------------TVYKSKTIY-KNLNPVWDEKFTLPIEDVT-----QP 62 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCE------------EEEEeeecc-CCCCCccceeEEEEecCCC-----Ce
Confidence 48999999999999998899999999999652 477999876 5899999999999986421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC-CcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG-KPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G-K~~G~L~Lsl~f~p 145 (281)
|.|+|+|++.+++|++||.+.++|.++..+. ....+++|.+..+ +..|+|+|.++|.|
T Consensus 63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELNK---PTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEeCCCCCCCcceEEEEEEHHHcCCCC---CeEEEEECCCCCCccCceEEEEEEEECC
Confidence 9999999998888999999999999998753 3467889986654 68999999999875
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.88 E-value=4.7e-22 Score=162.44 Aligned_cols=122 Identities=16% Similarity=0.327 Sum_probs=98.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-CCCceE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD-NCNHLF 84 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~-~~~~~~ 84 (281)
|+|+|++|+||+..+..+++||||+|.+.+ ++.||+++++ +.||+|||+|.|.+..... ......
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-------------~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-------------EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-------------eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCE
Confidence 589999999999988889999999999964 5789999875 7999999999999976210 011248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC---CcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG---KPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G---K~~G~L~Lsl~ 142 (281)
|.|+|+|++.+++|++||++.|+|.++.... +.....||+|....+ +.+|+|+|+++
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999998888999999999999998422 223467999875433 46799999863
No 7
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=1e-21 Score=160.71 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||...+..+..||||+|.+.+ +++||++++ ++.||+|||+|.|.+...... ....
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-------------~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~-~~~~ 65 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-------------QKKRTRTKP-KDLNPVWNEKLVFNVSDPSRL-SNLV 65 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-------------EEecceeEc-CCCCCccceEEEEEccCHHHc-cCCe
Confidence 5899999999999988889999999999965 577999976 689999999999999753211 1248
Q ss_pred EEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|.+.++ +|++||++.|+|+++... +.....||+|.+. .++.+|+|.|++.|+
T Consensus 66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EEEEEeeCCCCcCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999998776 799999999999999842 2234678888764 356899999999885
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=2.7e-21 Score=158.42 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=103.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+..++.||||+|.+.+..... ...+.||++.+ ++.||+|||+|.|.+.... ..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~------~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~-----~~ 68 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNG------EIDSVQTKTIK-KTLNPKWNEEFFFRVNPRE-----HR 68 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCC------cccceeeeEEc-CCCCCcEeeEEEEEEcCCC-----CE
Confidence 489999999999999988999999999997641100 11367899876 5999999999999987421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCC---ceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG---AVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g---~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|++.+++|++||++.+++.++..+..+ .....||+|... .|+.+|+|+|++.|.
T Consensus 69 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 69 LLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 899999999888899999999999999976432 245678888754 567899999999884
No 9
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.87 E-value=2.1e-21 Score=156.26 Aligned_cols=122 Identities=19% Similarity=0.301 Sum_probs=99.5
Q ss_pred eEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|.|+|+|++|+||+..+.+ +..||||+|++.++ . .+.||++++ ++.||+|||.|.|.+... .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~----------~~~kT~~~~-~~~~P~Wne~~~~~v~~~---~-- 64 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-R----------ELARTKVKK-DTSNPVWNETKYILVNSL---T-- 64 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-C----------cceEeeeec-CCCCCcceEEEEEEeCCC---C--
Confidence 7899999999999976544 67899999999763 0 477999976 589999999999998731 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|.|+|+|++.+++|++||++.++|.++..+.. ....++.+ ..+||.+|+|+++++|.|
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~-~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 65 EPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE--QENLTKNL-LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc--ccCcchhh-hcCCccceEEEEEEEeCC
Confidence 3899999999988789999999999999998642 22234444 358899999999999975
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=3.8e-21 Score=159.83 Aligned_cols=113 Identities=21% Similarity=0.244 Sum_probs=95.4
Q ss_pred EEEEEEEeecC---CCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 5 TLELKVNSCSD---LKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 5 ~LeVtViSAkd---Lk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.|+|+|++|++ |+..+..|++||||+|.+++ ++.||++++ ++.||+|||+|.|.+.+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-------------~~~rTk~~~-~~~nP~WnE~f~f~v~~~~---- 62 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-------------KWVRTRTVE-DSSNPRWNEQYTWPVYDPC---- 62 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-------------EEeEcCccc-CCCCCcceeEEEEEecCCC----
Confidence 48999999999 88889899999999999954 588999986 5899999999999997532
Q ss_pred ceEEEEEEEECCccC------CCeeeEEEEEechhhhcccCCceEEEEEEEEcCC---CCcceEEEE
Q 040877 82 HLFIAFDLYSEGVIY------GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH---GKPNGVLSF 139 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~------gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~---GK~~G~L~L 139 (281)
..|.|+|||++.++ +|++||++.|+|.++..+. ....+|+|...+ +|..|.|++
T Consensus 63 -~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 63 -TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 37999999998763 8999999999999998753 457899998654 456788875
No 11
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.86 E-value=9.5e-21 Score=151.93 Aligned_cols=117 Identities=24% Similarity=0.346 Sum_probs=99.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|+||+..+.++++||||+|.+.+ .+.||++++ ++.||+|||+|.|.+.+.. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~~T~~~~-~t~nP~W~e~f~~~~~~~~-----~ 61 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-------------ARLQTHTIY-KTLNPEWNKIFTFPIKDIH-----D 61 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-------------Eeeecceec-CCcCCccCcEEEEEecCcC-----C
Confidence 68999999999999999889999999999965 467999976 4899999999999987421 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEEEEe
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCYKLK 144 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl~f~ 144 (281)
.|.|+|+|++.++++++||++.++|.++..+. ..||.|... .++.+|.|.|+++|.
T Consensus 62 ~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 62 VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-----RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred EEEEEEEECCCCCCCceeeEEEEEHHHCCCCC-----ceEEECcccCCCCceeeEEEEEEEeC
Confidence 79999999998788999999999999987653 357888754 456899999999873
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.86 E-value=7.8e-21 Score=153.61 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=96.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|++|+..+.+++.||||+|.+.+... .+.||++++ ++.||+|||+|.|.+.... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~----------~~~kT~vv~-~t~nP~Wne~f~f~i~~~~----~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASD----------EKKRTKTIK-NSINPVWNETFEFRIQSQV----KNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCC----------ccCccceec-CCCCCccceEEEEEeCccc----CCEE
Confidence 799999999999988889999999999965321 477999986 4899999999999997542 1379
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
+|+|+|++.+ +|++||++.++|.++..|. ....+|+|.. +.+|+|++.+.|
T Consensus 67 ~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~---~~~~~~~L~~---~~~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYV-MDDHLGTVLFDVSKLKLGE---KVRVTFSLNP---QGKEELEVEFLL 117 (119)
T ss_pred EEEEEECCCC-CCcccEEEEEEHHHCCCCC---cEEEEEECCC---CCCceEEEEEEe
Confidence 9999999987 9999999999999998763 3567888743 468888888876
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.85 E-value=1.4e-20 Score=157.31 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=98.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.|.|+|+|++|+||+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.+...
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-------------~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~---- 75 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-------------QEHKTKVVS-DTLNPKWNSSMQFFVKDLEQ---- 75 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-------------EeeeccccC-CCCCCccCceEEEEecCccC----
Confidence 378999999999999999899999999999854 578999976 58999999999999975321
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCC--ceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNG--AVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g--~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
..|.|+|||++.+++|++||.+.++|.+|+..... .....+..+ +++.+|+|+|++.|
T Consensus 76 ~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 76 DVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 38999999999888899999999999999974321 111222332 57889999999987
No 14
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=8.7e-21 Score=156.42 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||+..+ .|++||||+|++.+..... ..+++||++. +++.||+|||+|.|.|..... .....
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~------k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~-~~~~~ 71 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSD------KKRKFATKSK-NNNWSPKYNETFQFILGNEDD-PESYE 71 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcc------cccEeeeEEe-cCCCCCccCcEEEEEeeCcCC-CceeE
Confidence 5899999999999877 4999999999996521110 0156799997 579999999999999984321 12468
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|+|+|+|++.+++|++||++.|+|+++..+. ....|++|..
T Consensus 72 L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 72 LHICVKDYCFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred EEEEEEEecccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 9999999986667999999999999999764 2466777754
No 15
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.84 E-value=3.4e-20 Score=152.41 Aligned_cols=119 Identities=20% Similarity=0.191 Sum_probs=96.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+.. +..||||+|.+++. ++.||++. ++.||+|||+|.|.+.....
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~------------~~~kT~v~--~~~nP~WnE~f~f~~~~~~~---- 61 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV------------KVARTKVR--EGPNPVWSEEFVFDDLPPDV---- 61 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE------------eEEEeecC--CCCCCccCCEEEEecCCCCc----
Confidence 36899999999999874 46899999999652 45789973 47999999999998754321
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC---CCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH---GKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~---GK~~G~L~Lsl~f~p 145 (281)
..|.|+|+|.+.+++|++||++.|+|.++..+. ....||.|...+ ++..|.|+|+++|.+
T Consensus 62 ~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 62 NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQ---ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCC---cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 268899999998888999999999999988753 346788887543 346799999999976
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.84 E-value=3.1e-20 Score=159.10 Aligned_cols=119 Identities=18% Similarity=0.338 Sum_probs=98.2
Q ss_pred eEEEEEEEeecCCCCCC------------------------------CCCCCCeEEEEEEecCccchhhhhccccceEEe
Q 040877 4 STLELKVNSCSDLKAFN------------------------------LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKT 53 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~------------------------------~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KT 53 (281)
|+|+|+|++|++|.+.| ..|++||||+|.+.+. +..||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~------------~~~rT 74 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA------------RVART 74 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe------------EeeEE
Confidence 89999999999999876 3467899999999763 35699
Q ss_pred eecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-
Q 040877 54 PTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK- 132 (281)
Q Consensus 54 kV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK- 132 (281)
++++ ++.||+|||+|.|.+.... ..|.|+|+|++.+ ++++||++.|+|+++..+. ....||+|.+.+|+
T Consensus 75 ~v~~-~~~nP~WnE~F~~~~~~~~-----~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~ 144 (158)
T cd04015 75 RVIE-NSENPVWNESFHIYCAHYA-----SHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGE---PVEGWLPILDSNGKP 144 (158)
T ss_pred EEeC-CCCCCccceEEEEEccCCC-----CEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCC---CcceEEECcCCCCCC
Confidence 9986 4799999999999987432 2789999999865 6789999999999998753 34678999877665
Q ss_pred --cceEEEEEEEEe
Q 040877 133 --PNGVLSFCYKLK 144 (281)
Q Consensus 133 --~~G~L~Lsl~f~ 144 (281)
..|.|+|+++|.
T Consensus 145 ~~~~~~l~v~~~f~ 158 (158)
T cd04015 145 PKPGAKIRVSLQFT 158 (158)
T ss_pred CCCCCEEEEEEEEC
Confidence 357999999984
No 17
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.84 E-value=5.2e-20 Score=150.60 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=97.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|.|+|++|+||.. .+++.||||++.+.... ++.||++++ ++.||+|||+|.|.+... ...|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~-----------~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l 61 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPP-----------QKYQSSTQK-NTSNPFWDEHFLFELSPN-----SKEL 61 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCC-----------cEEEeEEEe-cCCCCccCceEEEEeCCC-----CCEE
Confidence 6799999999987 67899999999996321 578999986 579999999999999642 1379
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC---CCCcceEEEEEEEEee
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~---~GK~~G~L~Lsl~f~p 145 (281)
.|+|+|.+.+++|++||++.++|.++..+... ..+|+|... +++.+|+|++.+.|.+
T Consensus 62 ~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 62 LFEVYDNGKKSDSKFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEECCCCCCCceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999888899999999999999976532 456777644 3568999999999987
No 18
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3.2e-20 Score=151.90 Aligned_cols=116 Identities=17% Similarity=0.231 Sum_probs=96.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||+.. +.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.... ...|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-------------~~~kT~v~~-~t~nP~Wne~F~f~~~~~~----~~~L 59 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-------------YKGSTKAIE-RTSNPEWNQVFAFSKDRLQ----GSTL 59 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-------------ccccccccC-CCCCCccceEEEEEcCCCc----CCEE
Confidence 89999999999877 689999999964 477999976 5899999999999987532 1489
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccC--CceEEEEEEEEcCC-CCcceEEEEEEEEe
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFN--GAVRFVRYQIRTGH-GKPNGVLSFCYKLK 144 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~--g~~~~vsy~L~~~~-GK~~G~L~Lsl~f~ 144 (281)
.|+|+|++.+ +|++||.+.++|+++..+.. +.....||.|.... .+..|+|+|+++|+
T Consensus 60 ~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 60 EVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred EEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999975 89999999999999976432 22346789987654 47889999999996
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.84 E-value=6.5e-20 Score=150.08 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 5 TLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
.|.|+|++|+||+..+ ..+..||||+|.+.+. .+.||++.+ ++.||+|||+|.|.+.+.. .
T Consensus 1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~------------~~~kT~v~~-kt~~P~WnE~F~f~v~~~~-----~ 62 (121)
T cd08401 1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE------------EVFRTKTVE-KSLCPFFGEDFYFEIPRTF-----R 62 (121)
T ss_pred CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCc------------cEEEeeEEE-CCCCCccCCeEEEEcCCCC-----C
Confidence 3789999999999864 3478899999999542 467899976 5999999999999998531 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc--CCCCcceEEEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT--GHGKPNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~--~~GK~~G~L~Lsl~f 143 (281)
.|.|+|+|.+.+++|++||.+.++|.++..+. ....||.|.. .+++.+|.|+|+++|
T Consensus 63 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 63 HLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEECCCCCCCceEEEEEEEHHHccCCC---CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 89999999998888999999999999998753 2467888764 356679999999886
No 20
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.84 E-value=4.3e-20 Score=149.85 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=97.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
+|+|+|++|+||+..+..+..||||+|.+.+ .+.||++++ ++.||+|||+|.|.+.... ...
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~ 62 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-------------QTLETSVVK-KSCYPRWNEVFEFELMEGA----DSP 62 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-------------EEEeceeec-CCCCCccCcEEEEEcCCCC----CCE
Confidence 4899999999999988888999999999854 467899976 5899999999999998642 147
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc------CCCCcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT------GHGKPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~------~~GK~~G~L~Lsl~ 142 (281)
|.|+|+|++.++++++||.+.++|.++..+.. ...||.|.. .+++..|.|+|.|+
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEEEEECCCCCCCcEeEEEEEEHHHcccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 99999999988889999999999999976432 245777764 25677899999764
No 21
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.83 E-value=2.6e-20 Score=152.66 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=88.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEe-ccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDI-KAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V-~~~~~~~~ 81 (281)
.++|+|+|++|+||...+ .+..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+ +.....
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~--------~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~-- 79 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQK--------TTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQ-- 79 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCcc--------CCceeCCccC-CCCCCCcccEEEEecCChHHhC--
Confidence 368999999999999988 889999999999875322 2688999986 589999999999998 432222
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|++.+.+|++||++.|+|+++..+. ....||.|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 2489999999998888999999999999988642 23566664
No 22
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.83 E-value=1.1e-19 Score=149.61 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=98.2
Q ss_pred CCceEEEEEEEeecCCCCCCCC----------CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEE
Q 040877 1 MEWSTLELKVNSCSDLKAFNLF----------NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMK 70 (281)
Q Consensus 1 Me~g~LeVtViSAkdLk~~~~~----------gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~ 70 (281)
|-.|.|+|+|++|+||+..+.. +..||||+|.+++. +..||++.+ ++.||+|||+|.
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~------------~~~kT~~~~-~t~~P~Wne~f~ 67 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT------------HIGKTSTKP-KTNSPVWNEEFT 67 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE------------EEeEEeEcC-CCCCCCcceeEE
Confidence 6779999999999999987752 57899999999652 356899866 589999999999
Q ss_pred EEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 71 FDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 71 F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
|.+.+. ..|.|+|++.+.++.|++||++.++|.++..+. +.....||.|. ++|.|++.+++..
T Consensus 68 ~~v~~~------~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 68 TEVHNG------RNLELTVFHDAAIGPDDFVANCTISFEDLIQRG-SGSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred EEcCCC------CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccC-CCcccEEEEcc-----CCcEEEEEEEEec
Confidence 999631 379999999888778999999999999999841 12346777773 6799999998864
No 23
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.83 E-value=7.1e-20 Score=148.79 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=84.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|+|++|+||+..+.++++||||+|++.+ ++++|++.++++.||+|||+|.|.+...... ...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~-~~~ 66 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-------------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWG-GDT 66 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-------------EeeeeeEcCCCCCCCcccceEEEEecCcccC-CCC
Confidence 68999999999999999889999999999954 4678888876789999999999999865211 124
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.|.|+|+|.+.+.+|++||++.++|++++.+.
T Consensus 67 ~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~ 98 (124)
T cd04049 67 KLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98 (124)
T ss_pred EEEEEEEECccCCCCCeEEEEEEEhHHhhhCC
Confidence 89999999998888999999999999998754
No 24
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=7.6e-20 Score=148.19 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=98.9
Q ss_pred eEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
|.|+|+|++|+||...+. .+..||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.+..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-------------~~~kT~~~~-~t~~P~Wne~f~~~~~~~~---- 62 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-------------QRFKTQTIP-NTLNPKWNYWCEFPIFSAQ---- 62 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-------------EEEecceec-CCcCCccCCcEEEEecCCC----
Confidence 679999999999998887 88999999999853 578999976 5899999999999998522
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC----CCcceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH----GKPNGVLSFCYKL 143 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~----GK~~G~L~Lsl~f 143 (281)
...|.|+|+|.+.+++|++||.+.|+|.++...........||.|.... ++.+|+|+|.+.|
T Consensus 63 ~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 1389999999998778999999999999998532112345677776442 3478999998864
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=1.3e-19 Score=145.10 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=96.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.++..||||++.+.+ ++.||++.+ ++.||+|||+|.|.+.+.. ...
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~ 62 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-------------EKYKSKVCS-KTLNPQWLEQFDLHLFDDQ----SQI 62 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-------------EeEeccccc-CCCCCceeEEEEEEecCCC----CCE
Confidence 3799999999999998889999999999954 578999976 5999999999999997542 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
|.|+|+|.+.+++|++||.+.++|+++..+. ....||+|... +|.|+|.+.+.
T Consensus 63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 63 LEIEVWDKDTGKKDEFIGRCEIDLSALPREQ---THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEECCCCCCCCeEEEEEEeHHHCCCCC---ceEEEEEccCC----CcEEEEEEEec
Confidence 9999999998888999999999999988653 45788888542 58898887764
No 26
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.83 E-value=1.3e-19 Score=147.68 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=96.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|.|+|++|++|+..+..++.||||+|.+.+. ...||+++++ +.||+|||+|.|.+.... ..
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~------------~~~kT~v~~~-t~nP~Wne~f~~~~~~~~-----~~ 62 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNE------------VIIRTATVWK-TLNPFWGEEYTVHLPPGF-----HT 62 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCE------------eeeeeeeEcC-CCCCcccceEEEeeCCCC-----CE
Confidence 48999999999999999999999999999652 3569999864 899999999999986421 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc--CCCCcceEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT--GHGKPNGVLSFCYK 142 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~--~~GK~~G~L~Lsl~ 142 (281)
|.|+|+|++.++.|++||++.+++.++..+.. ....|+.|+. .+++..|+|+|.++
T Consensus 63 l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~--~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 63 VSFYVLDEDTLSRDDVIGKVSLTREVISAHPR--GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEECCCCCCCCEEEEEEEcHHHhccCCC--CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999988889999999999988875321 2345777753 45668899999876
No 27
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.83 E-value=6e-20 Score=152.27 Aligned_cols=113 Identities=21% Similarity=0.329 Sum_probs=91.6
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|.|+|++|+||...+.. +..||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.|....+.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~--------~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~-- 82 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH--------NSKRKTAVKK-GTVNPVFNETLKYVVEADLLS-- 82 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc--------cceeeccccc-CCCCCccceEEEEEcCHHHhC--
Confidence 47899999999999988764 89999999999876322 1588999976 599999999999999764432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|.|++.+.+.++++||++.|+|+++.-.........||.|
T Consensus 83 ~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 83 SRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 258999999999888899999999999998544323345667765
No 28
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=1.5e-19 Score=147.64 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=97.5
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEE
Q 040877 10 VNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDL 89 (281)
Q Consensus 10 ViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV 89 (281)
||+|+||++ .+++.||||+|.+.+ .++||++.+ ++.||+|||+|.|.+....+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-------------~~~kT~v~~-~~~nP~Wne~f~f~~~~~~~~--~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-------------VKKKTRVLE-NELNPVWNETFEWPLAGSPDP--DESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-------------EeeecceeC-CCcCCcccceEEEEeCCCcCC--CCEEEEEE
Confidence 899999998 679999999999965 467999986 579999999999999754222 24899999
Q ss_pred EECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEEee
Q 040877 90 YSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKLKG 145 (281)
Q Consensus 90 ~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f~p 145 (281)
++++.+++|++||++.++|.++..+. ....+++|.+.+++ .+|+|++++.|.+
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~---~~~~~~~L~~~~~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEG---LLEVTEPLLDSNGRPTGATISLEVSYQP 117 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCC---ceEEEEeCcCCCCCcccEEEEEEEEEeC
Confidence 99998888999999999999998753 35678999877666 4899999999998
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=4.4e-20 Score=152.34 Aligned_cols=97 Identities=10% Similarity=0.126 Sum_probs=81.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+||+|+||+ ..+.+||||+|.+..+..+ .|+||+|.+ ++.||+|||+|.|+|+...+. .
T Consensus 13 ~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~---------~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l~--~ 77 (118)
T cd08677 13 KAELHVNILEAENIS---VDAGCECYISGCVSVSEGQ---------KEAQTALKK-LALHTQWEEELVFPLPEEESL--D 77 (118)
T ss_pred CCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCc---------cEEEcceec-CCCCCccccEEEEeCCHHHhC--C
Confidence 478999999999999 2467999999999754211 577999976 599999999999999865443 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.+|.|.|+|+|++++|++||++.+++.++..+
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~ 109 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMM 109 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCC
Confidence 58999999999999999999999999987443
No 30
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.82 E-value=1.6e-19 Score=147.52 Aligned_cols=116 Identities=16% Similarity=0.291 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||+|.+.+. +++||++++ ++.||+|||+|.|.+.. . ..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~------------~~~kT~v~~-~t~nP~Wne~f~~~~~~----~--~~ 61 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGG------------QTHSTDVAK-KTLDPKWNEHFDLTVGP----S--SI 61 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCc------------cceEccEEc-CCCCCcccceEEEEeCC----C--CE
Confidence 48999999999999998999999999999653 578999976 58999999999999974 1 38
Q ss_pred EEEEEEECCccCC--CeeeEEEEEechhhhcccCCceEEEEEEEEcC----CCCcceEEEEEE
Q 040877 85 IAFDLYSEGVIYG--YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG----HGKPNGVLSFCY 141 (281)
Q Consensus 85 L~~eV~d~~~~~g--Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~----~GK~~G~L~Lsl 141 (281)
|.|+|+|++.++. |++||++.+++++|+....+ ...+|+|+.. .|+..|.|.+.+
T Consensus 62 l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 62 ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT--GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEEEECCCCCCCCCceEeEEEEEHHHccccCCC--ccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999997754 58999999999999875432 2346777543 456789988875
No 31
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.82 E-value=1.8e-19 Score=147.74 Aligned_cols=118 Identities=13% Similarity=0.176 Sum_probs=96.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|+|+|++|++|+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||.|.|.+... .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~ 62 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-------------ESVRSPVQK-DTLSPEFDTQAIFYRKKP-----R 62 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-------------EEEEeCccC-CCCCCcccceEEEEecCC-----C
Confidence 468999999999999999899999999999865 578999976 689999999999988642 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE----cCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR----TGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~----~~~GK~~G~L~Lsl~f~p 145 (281)
..|.|+|||++.+ +|++||++.+++.++..+. ..+|+|. +.+|+..|+|.|.+.+.+
T Consensus 63 ~~l~i~V~d~~~~-~d~~lG~~~~~l~~~~~~~-----~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 63 SPIKIQVWNSNLL-CDEFLGQATLSADPNDSQT-----LRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CEEEEEEEECCCC-CCCceEEEEEecccCCCcC-----ceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999865 6999999999998864321 2334442 357889999999988765
No 32
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=5.2e-20 Score=159.43 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=86.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
-|.|+|+|++|.||...|+.+++||||++.+++ ++.||++.. ++.||+|||+|+|.|.+..
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-------------q~lkT~~v~-~n~NPeWNe~ltf~v~d~~----- 65 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-------------QKLKTRVVY-KNLNPEWNEELTFTVKDPN----- 65 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC-------------eeeeeeeec-CCCCCcccceEEEEecCCC-----
Confidence 489999999999999999889999999999976 699999865 6999999999999999653
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
..|.++|||+|.|..|+++|+|.|+|+.++...
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 489999999999999999999999999999864
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=2.3e-19 Score=147.67 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred ceEEEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.++|.|+|++|+||...+. .++.||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.|....+..
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~--------~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~- 83 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSR--------QSKRKTSIKR-NTTNPVYNETLKYSISHSQLET- 83 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcc--------ccceEeeeee-CCCCCcccceEEEECCHHHhCC-
Confidence 5789999999999987754 588999999999765321 1578999876 5899999999999997543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|++.++++++||++.|+|.++.... ....||+|
T Consensus 84 -~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l 124 (125)
T cd04029 84 -RTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS---QHEECLPL 124 (125)
T ss_pred -CEEEEEEEECCCCCCCcEEEEEEEeCCcccccC---CcccEEEC
Confidence 489999999998889999999999999987653 23566665
No 34
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.81 E-value=4.8e-19 Score=146.83 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=99.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc-----cC
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV-----DN 79 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~-----~~ 79 (281)
.|+|+|++|++|...+.+++.||||+|.+.+ +++||++++ ++.||+|||+|.|.+.... ..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~ 67 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-------------QSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIA 67 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-------------eeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhh
Confidence 5899999999999999899999999999964 578999986 5899999999999864211 00
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEE-echhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHV-PLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~V-pL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
.+...|.|+|+|++.++.|++||++.+ ++..+.....+.....||.|. ..|+.+|+|.|++.+.++
T Consensus 68 ~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 68 QNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQSAGELLAAFELIEV 134 (135)
T ss_pred cCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence 112478999999998888999999987 555444322233456788886 467799999999999874
No 35
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.81 E-value=1.9e-19 Score=147.83 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=88.9
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||...+.. +..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+....+..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~--------~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~- 83 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSN--------RGKRKTSVKK-KTLNPVFNETLRYKVEREELPT- 83 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCc--------cccccCccCc-CCCCCccCceEEEECCHHHhCC-
Confidence 36899999999999998865 78999999999865321 1467999986 5899999999999997543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.++++++||++.|+|+++.... ....||.|
T Consensus 84 -~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~---~~~~W~~L 124 (125)
T cd08393 84 -RVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN---TQPTWYPL 124 (125)
T ss_pred -CEEEEEEEeCCCCCCCcEeEEEEEecCccccCC---CCcceEEC
Confidence 489999999998888999999999999986542 23456665
No 36
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=4e-19 Score=142.42 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=94.7
Q ss_pred eEEEEEEEeecCCCCCCC------CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLKAFNL------FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~------~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
|.|+|+|++|+||+..+. .++.||||+|.+.+ ++.||++.+ ++.||+|||+|.|.+.+..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-------------~~~kT~~~~-~t~~P~W~e~f~~~v~~~~ 66 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-------------QTFKSKVIK-ENLNPKWNEVYEAVVDEVP 66 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-------------EeEEccccC-CCCCCcccceEEEEeCCCC
Confidence 579999999999998764 26899999999965 478999976 5899999999999997532
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
...|.|+|+|++.+ +|++||.+.++|.++..+. ....||.|.+ ..+|.|+|.++|
T Consensus 67 ----~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 67 ----GQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKG---FIDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred ----CCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccC---ccceEEECcC---CCCceEEEEEeC
Confidence 13899999999976 8999999999999998743 2457888754 378999998875
No 37
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.80 E-value=1.6e-18 Score=140.14 Aligned_cols=122 Identities=22% Similarity=0.285 Sum_probs=98.4
Q ss_pred eEEEEEEEeecCCCCCC--CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKAFN--LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~--~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
..|+|+|++|+||+..+ ..+..||||+|++.+...+. ..+.||+++++++.||+|||+|.|.+....
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~-------~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---- 70 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADD-------SAKFKTKVVKNNGFNPVWNETFEFDVTVPE---- 70 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCC-------CCcEeeeeecCCCcCCccCCcEEEEEeCCC----
Confidence 37999999999999877 57889999999997653200 157899998766679999999999998432
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC--cceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKL 143 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK--~~G~L~Lsl~f 143 (281)
...|.|+|+|.+.. +|++||++.++|++|..++ .+++|++.+|+ ..|.|.+.+++
T Consensus 71 ~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g~------~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 71 LAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQGY------RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCce------EEEEecCCCCCCCcceeEEEEEEE
Confidence 24899999999977 8999999999999996642 46788887775 56888887765
No 38
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.80 E-value=4e-19 Score=143.19 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=81.1
Q ss_pred eEEEEEEEeecCCCCCCCC----CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC
Q 040877 4 STLELKVNSCSDLKAFNLF----NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN 79 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~----gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~ 79 (281)
|.|.|+|++|+||+..+.. +..||||+|.+.+ +++||++++ ++.||+|||+|.|.+.....
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-------------~~~kT~v~~-~t~nPvWne~f~f~v~~~~~- 65 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-------------RVFRTSWRR-HTLNPVFNERLAFEVYPHEK- 65 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-------------EeEeeeeec-CCCCCcccceEEEEEeCccC-
Confidence 6799999999999987643 3589999999853 577999987 48999999999999875332
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
...|.|+|||.+.++.|++||++.++|.+|+.++
T Consensus 66 --~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 66 --NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 2489999999998888999999999999999876
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.80 E-value=6.9e-19 Score=142.74 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||...+..++.||||+|.+.++.. +++||++++ ++.||+|||+|.|.+...... .
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~--~ 81 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK----------KKFETKVHR-KTLNPVFNETFTFKVPYSELG--N 81 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC----------CceecccCc-CCCCCceeeeEEEeCCHHHhC--C
Confidence 478999999999999988889999999999976421 477999976 589999999999999753222 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.+++|++||++.++|.++..+. ....|+.|
T Consensus 82 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~---~~~~W~~l 122 (124)
T cd08385 82 KTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH---VTEEWRDL 122 (124)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEEecCcccCCC---CcceEEEc
Confidence 489999999998888999999999999986643 23456654
No 40
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=9.6e-19 Score=139.72 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=95.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|++|...+..+++||||+|.+.+. ...+|++.+ ++.||+|||+|.|.+.... ...|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~------------~~~~T~v~~-~~~~P~Wne~f~~~~~~~~----~~~l 63 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE------------KVFKTKTIK-KTLNPVWNESFEVPVPSRV----RAVL 63 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC------------cceeeceec-CCCCCcccccEEEEeccCC----CCEE
Confidence 6899999999999888899999999999653 467999975 6999999999999997532 2489
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSF 139 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~L 139 (281)
.|+|+|.+.++++++||++.+++.++..+. ....+++|...+|...|+|-|
T Consensus 64 ~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~---~~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 64 KVEVYDWDRGGKDDLLGSAYIDLSDLEPEE---TTELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred EEEEEeCCCCCCCCceEEEEEEHHHcCCCC---cEEEEEECcCCCCccCceEEc
Confidence 999999998888999999999999998753 356788887767778888754
No 41
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.80 E-value=7.4e-19 Score=142.69 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=88.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.++..||||+|.+.++..+ ..++||++++ ++.||+|||+|.|.+.......
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~-- 83 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSK--------STRRKTSVKK-DNLNPVFDETFEFPVSLEELKR-- 83 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCC--------CceEeccccc-CCCCCEECeEEEEecCHHHhcC--
Confidence 4789999999999999998899999999999764321 1688999986 5899999999999997543322
Q ss_pred eEEEEEEEECCcc--CCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVI--YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~--~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|.|++.+.+ ++|++||++.|+|++|..+. ....||.|
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L 126 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK---GFTQWYDL 126 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccC---CccceEEC
Confidence 4899999999875 57999999999999986542 23567765
No 42
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=2.6e-18 Score=144.65 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=96.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhc-cccceEEeeecCCCCCCCee-ceEEEEEeccCccCCCc
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQ-TCLQRQKTPTDREGGGNPEW-NHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~-~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~~~~~~~ 82 (281)
.+.|++++|+||+ .+.+|+.||||++.+.++..... ..+ --.+++||++++ ++.||+| ||+|.|.+...
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~-~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~------ 72 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIF-PALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT------ 72 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccc-cccccccceeeeeeEc-CCCCCceEceEEEEEcCCC------
Confidence 4689999999998 67889999999999976421100 000 001478999986 5899999 99999999631
Q ss_pred eEEEEEEEECCccC---CCeeeEEEEEechhhhcccCCceEEEEEEEEcC--CCCcceEEEEEE
Q 040877 83 LFIAFDLYSEGVIY---GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG--HGKPNGVLSFCY 141 (281)
Q Consensus 83 ~~L~~eV~d~~~~~---gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~--~GK~~G~L~Lsl 141 (281)
..|.|+|+|++..+ +|++||++.|+|.+|+.+........+|++.+. .++.+|+|.|.+
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 27999999976322 279999999999999988655556778887754 355789998865
No 43
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.79 E-value=2.2e-18 Score=139.91 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=95.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+..++.||||+|.+.+... ...||++++ ++.||+|||+|.|.+.... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~----------~~~kT~~~~-~t~~P~Wne~f~f~i~~~~----~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKR----------RIAKTRTIY-DTLNPRWDEEFELEVPAGE----PLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCe----------eeecccEec-CCCCCcccceEEEEcCCCC----CCE
Confidence 5899999999999998889999999998754311 467999976 4799999999999998632 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
|.|+|+|.+.++++++||++.++|.++..+.++.....|+.|. .+|.|++.+.+..
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-----~~g~i~l~~~~~~ 122 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-----TQGRLLLRVSMEG 122 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-----CCCeEEEEEEEee
Confidence 9999999998778999999999999876543233456788773 2678888776643
No 44
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.79 E-value=6.2e-19 Score=144.21 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=86.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||...+ .+..||||+|.+.++..+. .++||++.+ ++.||+|||+|.|.+..... +
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~--------~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~-~-- 77 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVR--------FRQKTSTVP-DSANPLFHETFSFDVNERDY-Q-- 77 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCc--------ceEeCcccc-CCCCCccccEEEEEcChHHh-C--
Confidence 478999999999999888 7889999999998764321 577999976 58999999999999975433 1
Q ss_pred eEEEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 83 LFIAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 83 ~~L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+||+.+... ++++||++.|+|.++..+. ....||.|
T Consensus 78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~---~~~~Wy~l 119 (119)
T cd08685 78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK---EISGWYYL 119 (119)
T ss_pred CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc---cccceEeC
Confidence 26889999988764 4789999999999998542 23566654
No 45
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=6.3e-19 Score=141.03 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+ .+..||||+|++.+ +++||++++ ++.||+|||+|.|.+......-....
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~-------------~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~ 66 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGG-------------QKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKI 66 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECC-------------EeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCe
Confidence 6899999999999 47799999999975 577899865 58999999999999864221101248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|.|+|+|.+.+++|++||++.++|.++..+.....-..||+|.+
T Consensus 67 l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 67 IKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 99999999988889999999999999988754445567888865
No 46
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.79 E-value=5.3e-19 Score=141.64 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=88.0
Q ss_pred EEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee-ceEEEEEeccCccCCCce
Q 040877 6 LELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW-NHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 6 LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~~~~~~~~ 83 (281)
|+|+|++|++|+..+. .+..||||+|.+.+ ++.||++++ ++.||+| ||+|.|.+....+.. .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-------------~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~--~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-------------TTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQD--E 64 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-------------eeEecceec-CCCCCcccCcEEEEEcChHHcCC--C
Confidence 6899999999998874 68899999999964 478999986 5899999 999999998543222 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
.|.|+|+|.+.+++|++||++.++|.+|.....+.....||.|.+
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999988889999999999999998422233567887754
No 47
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.79 E-value=2.3e-18 Score=141.31 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=96.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|+|+|++|+ |...+.++++||||+|.+.+. .+.||++++ ++.||+|||+|.|.+... .
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~------------~~~kT~v~~-~t~~P~Wne~f~~~~~~~------~ 61 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ------------PPKKTEVSK-KTSNPKWNEHFTVLVTPQ------S 61 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc------------ccEEeeeeC-CCCCCccccEEEEEeCCC------C
Confidence 36999999999 554555889999999999652 377999976 689999999999998632 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCce--EEEEEEEEcCC---CCcceEEEEEE
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAV--RFVRYQIRTGH---GKPNGVLSFCY 141 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~--~~vsy~L~~~~---GK~~G~L~Lsl 141 (281)
.|.|+|+|++.+++|++||++.++|.+++....+.. ..+++++.+.+ |+.+|.|++.+
T Consensus 62 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 62 TLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 799999999988889999999999999998765433 34688887543 57899999865
No 48
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.79 E-value=9.4e-19 Score=138.92 Aligned_cols=102 Identities=17% Similarity=0.265 Sum_probs=86.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|.|+|++|+||+..+..+.+||||+|.+.+ +++||++++ ++.||+|||+|.|.+..... ..
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~----~~ 62 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-------------TTQKSKVKE-RTNNPVWEEGFTFLVRNPEN----QE 62 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-------------EEEeCcccc-CCCCCcccceEEEEeCCCCC----CE
Confidence 3899999999999988889999999999975 578899976 68999999999999986321 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|.|+|+|++. |++||.+.|+|.+|.... +.....||+|..
T Consensus 63 l~v~v~d~~~---~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~~ 102 (105)
T cd04050 63 LEIEVKDDKT---GKSLGSLTLPLSELLKEP-DLTLDQPFPLDN 102 (105)
T ss_pred EEEEEEECCC---CCccEEEEEEHHHhhccc-cceeeeeEecCC
Confidence 9999999884 899999999999999764 334567888853
No 49
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=8e-19 Score=140.81 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=83.1
Q ss_pred eEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|.|+|+|++|++|...+.+ ++.||||+|.+.+... .+.||++++ ++.||+|||+|.|.+....+. ..
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~----------~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~-~~ 68 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGK----------PLYSTRIIR-KDLNPVWEETWFVLVTPDEVK-AG 68 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCC----------ccEeeeeEC-CCCCCccceeEEEEeCchhcc-CC
Confidence 6899999999999998887 8999999999965421 467999987 589999999999988643211 12
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
..|.|+|+|++.+++|++||++.++|.+|++.
T Consensus 69 ~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 69 ERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence 48999999999888899999999999999853
No 50
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.79 E-value=6.7e-19 Score=145.71 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=85.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+..+..||||+|.+.++..+. ..++||++.+ ++.||+|||+|.|+|....+.+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~-------~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L~~-- 82 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSST-------SCLFRTKALE-DQDKPVFNEVFRVPISSTKLYQ-- 82 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCC-------CceEEcCccC-CCCCCccccEEEEECCHHHhhc--
Confidence 47899999999999988777889999999998864321 1478999976 5999999999999998655433
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|+|.|++.+.++++++||++.|+|+++-.
T Consensus 83 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 83 KTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred CEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 5999999999988889999999999999844
No 51
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=1e-18 Score=148.89 Aligned_cols=112 Identities=22% Similarity=0.377 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc---------
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA--------- 75 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~--------- 75 (281)
+|.|+|++|+||.. ..|..||||+|.+.+...+. +++||++++ ++.||+|||+|.|.+..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~--------~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~ 69 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQ--------DTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQF 69 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccC--------cccCCccEe-CCCCCccceEEEEEEecccccccccc
Confidence 58999999999998 45889999999998753221 577999976 59999999999999951
Q ss_pred --CccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 76 --FVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 76 --~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.....+...|.|+||+++.+.+|++||++.|+|.++..+. .....||+|...
T Consensus 70 ~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~~ 123 (148)
T cd04010 70 EMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQPR 123 (148)
T ss_pred cCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccC--CcCcceeecCCc
Confidence 1111123589999999998778999999999999988752 123678888654
No 52
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.79 E-value=1.1e-18 Score=140.71 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=88.7
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+ ..+..||||+|.+.++... ..+.||++.+ ++.||+|||+|.|.+....+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l~~- 82 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSK--------QSKRKTSVKK-NTTNPVFNETLKYHISKSQLET- 82 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCc--------CceeeccccC-CCCCCcccceEEEeCCHHHhCC-
Confidence 478999999999999888 6789999999999754321 1478999965 6999999999999998543322
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|.+.++++++||++.++|.++..+. ....||.|
T Consensus 83 -~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 83 -RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred -CEEEEEEEeCCCCcCCceeeEEEEecccccccC---CCccEEEC
Confidence 489999999998888999999999999996442 23567764
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=1.2e-18 Score=141.63 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=89.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||...+..+..||||+|.+..+.. +++||++.+ ++.||+|||+|.|.+....+. .
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~--~ 81 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS----------NTKQSKIHK-KTLNPEFDESFVFEVPPQELP--K 81 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC----------CcEeCceEc-CCCCCCcccEEEEeCCHHHhC--C
Confidence 468999999999999988889999999999964321 467999976 589999999999999854332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
..|.|+|+|.+.+++|++||++.|+|+++..+. ....||.|.
T Consensus 82 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 82 RTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CEEEEEEEECCCCCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 489999999998888999999999999998653 235677764
No 54
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=2.2e-18 Score=142.34 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=86.2
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEE-EeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKF-DIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F-~V~~~~~~~ 80 (281)
.++|+|+|++|+||+..+.. +..||||+|.+.++.. ++.||++++ ++.||+|||+|.| .+......
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~----------~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~~- 82 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE----------HKVKTRVLR-KTRNPVYDETFTFYGIPYNQLQ- 82 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC----------ceeeccEEc-CCCCCceeeEEEEcccCHHHhC-
Confidence 46899999999999988876 8899999999975421 577999976 5899999999999 45532222
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|++.+++|++||++.|+|+++.-..++ ...+|.++
T Consensus 83 -~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~ 126 (128)
T cd08388 83 -DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG-ELLVSREI 126 (128)
T ss_pred -CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc-eEEEEEec
Confidence 247999999999888899999999999998654322 23455543
No 55
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.78 E-value=1.2e-18 Score=143.03 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=87.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|+|+||+|+||...+..+..|+||++.+.++.. +++||++++ + .||+|||+|.|. +....+.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~----------~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~-- 80 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK----------QRAKTKVQR-G-PNPVFNETFTFSRVEPEELN-- 80 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc----------ceeeccccc-C-CCCcccCEEEECCCCHHHhc--
Confidence 468999999999999988778899999998876521 578999975 4 899999999998 6644332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|+|+|++.+.++++++||++.|+|+++..+. ....||.|
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~---~~~~w~~L 122 (124)
T cd08389 81 NMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG---ETTVWLTL 122 (124)
T ss_pred cCEEEEEEEECCCcccCceEEEEEEeccccCCCC---CceEEEeC
Confidence 3589999999998888999999999999996542 34567765
No 56
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=2.6e-18 Score=146.30 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||...+ ..+..||||++.+.++..+ ..++||++++ ++.||+|||+|.|.+. +.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~--------~~k~KT~v~k-ktlnPvfNE~F~f~v~---l~-- 93 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKC--------IAKKKTKIAR-KTLDPLYQQQLVFDVS---PT-- 93 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCcc--------ccceeceecC-CCCCCccCCeEEEEEc---CC--
Confidence 478999999999998764 4678999999999876321 2588999986 6999999999999998 22
Q ss_pred ceEEEEEEE-ECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 82 HLFIAFDLY-SEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 82 ~~~L~~eV~-d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
...|.|+|| +.+.+.++++||++.|+|+++..+. ....||.|...
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN---LVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC---CceeEEecCCc
Confidence 248999999 5666778999999999999985432 24678888753
No 57
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=2.6e-18 Score=140.44 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=89.3
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|+||++.+.++++||||+|++.+. .+.+|++.+ ++.||+|||+|.|.+.... .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~------------~~~kT~~~~-~t~~P~Wne~f~~~v~~~~-----~ 62 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI------------VKGRTVTIS-NTLNPVWDEVLYVPVTSPN-----Q 62 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCE------------EeeceeEEC-CCcCCccCceEEEEecCCC-----C
Confidence 579999999999999998899999999999652 467888865 6899999999999987532 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH 130 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~ 130 (281)
.|.|+|+|++.++.|++||++.++|.+++.+. ...||.+.+.+
T Consensus 63 ~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~----~~~~~~~~~~~ 105 (120)
T cd04045 63 KITLEVMDYEKVGKDRSLGSVEINVSDLIKKN----EDGKYVEYDDE 105 (120)
T ss_pred EEEEEEEECCCCCCCCeeeEEEEeHHHhhCCC----CCceEEecCCC
Confidence 79999999998888999999999999999862 35678877643
No 58
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.77 E-value=5.1e-18 Score=139.32 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=91.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|+..+.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+.... ..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~~v~-~t~~P~Wne~f~f~~~~~~-----~~ 62 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-------------TKKRTKTIP-QNLNPVWNEKFHFECHNSS-----DR 62 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-------------Eeeecceec-CCCCCccceEEEEEecCCC-----CE
Confidence 6999999999999999889999999999853 467899876 5899999999999986431 27
Q ss_pred EEEEEEECCcc-----------CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEE
Q 040877 85 IAFDLYSEGVI-----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCY 141 (281)
Q Consensus 85 L~~eV~d~~~~-----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl 141 (281)
|.|+|+|++.. ++|++||.+.++|.++... ...||.|...+ ++.+|.|.|++
T Consensus 63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccCC-----CCeEEECccCCCCCcEeEEEEEEC
Confidence 99999998742 3689999999999987533 24678877543 45899999864
No 59
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=2.7e-18 Score=138.79 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=86.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.+.|.|+|++|+||+..+..+..||||+|.+.++..+. .++||++++ ++.||+|||+|.|.+... .+.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~-- 83 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEK--------SKRRTKTVK-KTLNPEWNQTFEYSNVRRETLK-- 83 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcc--------ccccccccC-CCCCCccccEEEEcccCHHHhC--
Confidence 47899999999999998888999999999997643211 577999976 589999999999996432 222
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|+|.+.+.+|++||++.++|++.... + ...||.|
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~--~--~~~W~~L 124 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADALLD--D--EPHWYPL 124 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEeccccccc--C--CcceEEC
Confidence 248999999999888899999999999983322 1 2356665
No 60
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.76 E-value=4.9e-18 Score=137.70 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=86.5
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.++|+|+|++|+||+..+..++.||||+|.+.++.. ++.||++.+ ++.||+|||+|.|.+... ....
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~----------~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~- 82 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK----------HKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQ- 82 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC----------cceeeeeec-CCCCCccceeEEEcccCHHHhCC-
Confidence 468999999999999988889999999999954321 567999976 589999999999985322 1212
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
..|.|+|+|++.++++++||++.++|+++..+. ....||.|
T Consensus 83 -~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~l 123 (125)
T cd08386 83 -RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE---EQTFWKDL 123 (125)
T ss_pred -CEEEEEEEeCCCCcCCcEeeEEEEecccccCCC---CcceEEec
Confidence 379999999998888999999999999987643 23556655
No 61
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.76 E-value=3.4e-18 Score=143.45 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=82.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||...+..+..||||+|.+.++..+ ..++||+|.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~--------~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~--~ 82 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK--------ISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQ--D 82 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc--------ccccCCcccc-CCCCCeeceeEEEECCHHHhC--C
Confidence 3689999999999998887889999999999875332 2577899976 589999999999999864442 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
..|+|+|+|.+.++++++||++.|....
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 6999999999988899999999998764
No 62
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=4.8e-18 Score=140.50 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=85.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|++|+..+.+++.||||+|.+.+....+ ...++||++++ ++.||+|||+|.|.+.........
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~------~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~ 87 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFP------DVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEG 87 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCc------cccccccccCc-CCCCCccCCEEEEEechhhcccCC
Confidence 36899999999999998888999999999997542100 01578999976 589999999999999753211112
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
..|.|+|||.+.+++|++||++.++|++|....
T Consensus 88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred CEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 589999999998878999999999999998644
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.75 E-value=1.3e-17 Score=134.66 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=87.4
Q ss_pred ceEEEEEEEeecCCCCCC-CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFN-LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~-~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
.+.|+|+|++|+||+..+ .++..||||+|.+.++.. ++.||++.+ ++.||+|||+|.|.+....+.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~----------~~~~T~v~~-~~~~P~wne~f~f~i~~~~l~-- 79 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER----------RSLQSKVKR-KTQNPNFDETFVFQVSFKELQ-- 79 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC----------CceEeeeEc-CCCCCccceEEEEEcCHHHhc--
Confidence 468999999999999988 678999999999965421 467898875 599999999999999754332
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQI 126 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L 126 (281)
...|.|+|++.+.++++++||++.++|.++..... ...|++|
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~---~~~w~~L 121 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG---GVVWRDL 121 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCC---ceEEEeC
Confidence 24899999999987789999999999999887532 2466655
No 64
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.75 E-value=8e-18 Score=138.25 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=89.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||...+..+..||||+|.+.++..+. .+.||++++ ++.||+|||+|.|.+...... .
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~--------~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~--~ 80 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKK--------SKHKTQVKK-KTLNPEFNEEFFYDIKHSDLA--K 80 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCcc--------CCceeeeEe-ccCCCCcccEEEEECCHHHhC--C
Confidence 47899999999999999888999999999998653221 577999976 699999999999999754332 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK 132 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK 132 (281)
..|.|+|+|.+.+++|++||++.|++.+. + .....||.+++..++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~---~~~~~W~~~l~~~~~ 125 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAK--G---ERLRHWLDCLKNPDK 125 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCC--C---chHHHHHHHHhCCCC
Confidence 48999999999877899999999999752 2 123446666544344
No 65
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.75 E-value=6.6e-18 Score=142.40 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=81.4
Q ss_pred ceEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.++|.|+|++|+||+..+. .+..||||+|.+..+..+ +.|+||++.+ ++.||+|||+|.|+|+...+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k--------~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~- 83 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK--------LKKKQTKRAK-HKINPVWNEMIMFELPSELLA- 83 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc--------cceeccceee-CCCCCccccEEEEECCHHHhC-
Confidence 4789999999999998873 345899999999875322 3688999975 699999999999999865442
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
...|.|+|+|.+.+++|++||++.+++..
T Consensus 84 -~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 84 -ASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred -ccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 35899999999998899999999999964
No 66
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.75 E-value=3.6e-17 Score=138.84 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=81.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|+|+|++|++|+..+. ++.||||+|.+.+ ++.||++.+ ++.||+|||+|.|.+.+.. .
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-------------~~~kT~vvk-~t~nP~WnE~f~f~i~~~~-----~ 61 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-------------QKVKTRVIK-KNLNPVWNEELTLSVPNPM-----A 61 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-------------EEEEeeeEc-CCCCCeecccEEEEecCCC-----C
Confidence 789999999999998886 8899999999954 588999986 5899999999999998542 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.|.|+|||++.+++|++||++.++|.+|+..
T Consensus 62 ~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 7999999999988899999999999998864
No 67
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.74 E-value=5e-18 Score=140.53 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=90.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|+||+..+.++..||||+|.+.++..+ ..+.||++.+ ++.||+|||+|.|.+..... ..
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~--------~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~--~~ 82 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKR--------ISKKKTHVKK-CTLNPVFNESFVFDIPSEEL--ED 82 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCce--------eeeEcCcccc-CCCCCccCceEEEECCHHHh--CC
Confidence 4689999999999999998899999999999764221 2477899875 68999999999999975433 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G 135 (281)
..|.|+|+|.+.++++++||++.+++.+. +.. ...|+.+.+..|++.+
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~---~~~w~~l~~~~~~~i~ 130 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSG---GHHWKEVCNPPRRQIA 130 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcCC--Cch---HHHHHHHHhCCCCeee
Confidence 58999999999888899999999999982 211 2345555554566544
No 68
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.74 E-value=1.5e-17 Score=137.26 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=81.0
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
..++|+|+|++|++|++.+.+++.||||+|.+.+++.+ ..++||++.+ ++.||+|||+|.|.+......
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~-- 80 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRR--------LKKKKTSVKK-NTLNPTYNEALVFDVPPENVD-- 80 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcc--------cceecCCccc-CCCCCcccceEEEECCHHHhC--
Confidence 35789999999999999999999999999999754221 1477899864 699999999999998743221
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
...|.|+|+|++.+++|++||++.|++..
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 24799999999988889999999999873
No 69
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.74 E-value=4e-18 Score=138.90 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.++|+|+|++|+||+..+..+..||||+|.+.+...+ ..++||++.+ ++.||.|||+|.|.+....+.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~-- 80 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKK--------LKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLE-- 80 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeE--------eeeecCccee-cCCCCeeeeeEEEECCHHHhC--
Confidence 45799999999999999888899999999999865321 1467999876 689999999999999854321
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK 132 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK 132 (281)
...|.|+|+|.+.++++++||.+.++|.+ .+. ....|+.|.+..++
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~---~~~~W~~l~~~~~~ 126 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE---ELEHWNEMLASPRK 126 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCC--CCc---HHHHHHHHHhCCCC
Confidence 24899999999987889999999999999 222 12346666655454
No 70
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.7e-17 Score=138.57 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=82.0
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
++.|.|+|++||+|.+.+. .||||+|.+++ +|.||++.+ +.||+|||+|.|.+....
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~-------------~k~kT~v~~--~~nP~WnE~F~F~~~~~~----- 57 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDK---FNTYVTLKVQN-------------VKSTTIAVR--GSQPCWEQDFMFEINRLD----- 57 (127)
T ss_pred CceEEEEEEEeeCCCCCCC---CCCeEEEEECC-------------EEeEeeECC--CCCCceeeEEEEEEcCCC-----
Confidence 3589999999999987653 48999999955 588999975 369999999999997532
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
..|.|+|+|++. ..|++||.+.|+|.++..+.. .....||+|.-
T Consensus 58 ~~L~v~V~dkd~-~~DD~lG~v~i~L~~v~~~~~-~~~~~Wy~L~~ 101 (127)
T cd08394 58 LGLVIELWNKGL-IWDTLVGTVWIPLSTIRQSNE-EGPGEWLTLDS 101 (127)
T ss_pred CEEEEEEEeCCC-cCCCceEEEEEEhHHcccCCC-CCCCccEecCh
Confidence 259999999985 599999999999999997632 23356888763
No 71
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.4e-17 Score=142.43 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred EEEEEEEeecCCCCCCCCC--------------CCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEE
Q 040877 5 TLELKVNSCSDLKAFNLFN--------------RLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMK 70 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~g--------------k~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~ 70 (281)
+|+|+|++|+||+..+..+ .+||||+|.+.+ ++.||++++ ++.||+|||+|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-------------~~~kT~v~~-~t~nPvWNE~f~ 66 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-------------QKVKTSVKK-NSYNPEWNEQIV 66 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-------------EeeecceEc-CCCCCCcceEEE
Confidence 4899999999999877443 689999999976 467999986 589999999999
Q ss_pred EEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 71 FDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 71 F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
|.+..... . ..|.|+|+|++.+++|++||.+.++|.++....
T Consensus 67 f~v~~p~~-~--~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 67 FPEMFPPL-C--ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEeeCCCc-C--CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 99764322 1 379999999998889999999999999998753
No 72
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.73 E-value=3.8e-17 Score=130.39 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+.. +.+||||+|.+.+. .+.||++.+ + .||+|||+|.|.+..... ....
T Consensus 1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~------------~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~--~~~~ 61 (117)
T cd08383 1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQV------------EVARTKTVE-K-LNPFWGEEFVFDDPPPDV--TFFT 61 (117)
T ss_pred CeEEEEEEecCCCcC---CCCCceEEEEECCE------------EeEecceEE-C-CCCcccceEEEecCCccc--cEEE
Confidence 389999999999976 78999999999652 357899875 4 999999999999985432 2257
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEE
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKL 143 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f 143 (281)
|.|.+++.+...++..+|. ++|.++..+. ....||+|...+ ++..|+|+|.++|
T Consensus 62 l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 62 LSFYNKDKRSKDRDIVIGK--VALSKLDLGQ---GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecccCCCeeEEEE--EEecCcCCCC---cceeEEECccCCCCCCcCceEEEEEEC
Confidence 8888888875544555555 5555544432 245788886433 4578999999876
No 73
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.73 E-value=1.9e-17 Score=136.91 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=81.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||+..+..++.||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.+....+. .
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~--------~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~--~ 82 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKR--------LKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQ--K 82 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcc--------cceeecccee-CCCCCcccceEEEECCHHHhC--C
Confidence 3789999999999999988899999999999754221 2467898864 699999999999999753321 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+.+++|++||++.|++...
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 48999999999888899999999999764
No 74
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.73 E-value=2.1e-17 Score=137.98 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=81.3
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||...+ ++..||||+|.+.++..+ ..++||++.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~--------~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~--~ 81 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV--------VKTKKTEVVD-GAASPSFNESFSFKVTSRQLD--T 81 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE--------eeeeecccEe-CCCCCcccceEEEECCHHHhC--c
Confidence 368999999999999888 888999999999875321 2477999865 699999999999999854443 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
..|.|+|++.+.++++++||++.|+...+.
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 589999999998888999999999965443
No 75
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.73 E-value=1.7e-17 Score=137.19 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=81.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|+||+..+.+++.||||+|.+.....+ ..+.||++.+ ++.||+|||+|.|.+...... .
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~--------~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~--~ 82 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKR--------VEKKKTVIKK-RTLNPVFNESFIFNIPLERLR--E 82 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCc--------cccccCccee-CCCCCcccceEEEeCCHHHhC--C
Confidence 4789999999999999888899999999999643211 1467899976 689999999999998743221 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+.+++|++||++.|++.+.
T Consensus 83 ~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 83 TTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 48999999999888899999999999886
No 76
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.73 E-value=2.4e-17 Score=136.95 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=78.7
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|+|++|+||+..+.+++.||||+|.+.++.. ...++||++.+ ++.||+|||+|.|.+...... .
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~--------~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~--~ 81 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK--------LIKTKKTSCMR-GTIDPFYNESFSFKVPQEELE--N 81 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc--------ccceEcCcccc-CCCCCccceeEEEeCCHHHhC--C
Confidence 478999999999999999889999999999865321 12468899975 699999999999999643322 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEech
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLK 109 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~ 109 (281)
..|.|+|+|.+..++|++||++.|...
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCc
Confidence 479999999998888999999987653
No 77
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.73 E-value=2.3e-17 Score=137.29 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=78.1
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|+|+|++|++|+. +.+++.||||+|.+.+ ++.||++++ ++.||+|||+|.|.+..... .
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-------------~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~---~ 88 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-------------QEKRTEVIW-NNNNPRWNATFDFGSVELSP---G 88 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-------------ccccCceec-CCCCCcCCCEEEEecccCCC---C
Confidence 3789999999999984 6678999999999965 478999986 58999999999998543221 2
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
..|.|+|||++.+++|++||++.++|.....
T Consensus 89 ~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 89 GKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence 4899999999988899999999999986553
No 78
>PLN03008 Phospholipase D delta
Probab=99.73 E-value=3.6e-17 Score=169.55 Aligned_cols=123 Identities=17% Similarity=0.328 Sum_probs=101.6
Q ss_pred eEEEEEEEeecCCCCCCC------------------------------------------CCCCCeEEEEEEecCccchh
Q 040877 4 STLELKVNSCSDLKAFNL------------------------------------------FNRLSVYSVVSIINGELKKK 41 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~------------------------------------------~gk~DPYVvV~i~g~~~~~~ 41 (281)
|+|+|||.+|++|++.++ ++++||||+|.+.+.
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~----- 88 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA----- 88 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc-----
Confidence 789999999999986221 246799999999542
Q ss_pred hhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEE
Q 040877 42 EQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRF 121 (281)
Q Consensus 42 ~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~ 121 (281)
++.||+|++ ++.||+|||+|+|.+.... ..|.|+|+|++.+ ++++||++.|||.+|..|. ...
T Consensus 89 -------rv~RTrVi~-n~~NPvWNE~F~f~vah~~-----s~L~f~VkD~D~~-gaD~IG~a~IPL~~L~~Ge---~vd 151 (868)
T PLN03008 89 -------TLARTRVLK-NSQEPLWDEKFNISIAHPF-----AYLEFQVKDDDVF-GAQIIGTAKIPVRDIASGE---RIS 151 (868)
T ss_pred -------ceeeEEeCC-CCCCCCcceeEEEEecCCC-----ceEEEEEEcCCcc-CCceeEEEEEEHHHcCCCC---ceE
Confidence 466999985 5889999999999998642 3899999999976 6799999999999999874 357
Q ss_pred EEEEEEcCCCCc---ceEEEEEEEEeeeEE
Q 040877 122 VRYQIRTGHGKP---NGVLSFCYKLKGMTI 148 (281)
Q Consensus 122 vsy~L~~~~GK~---~G~L~Lsl~f~p~~~ 148 (281)
.|+.|.+.+||+ .|.|+|+++|.|++-
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 899999888763 479999999999643
No 79
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.73 E-value=9.5e-17 Score=138.12 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=96.8
Q ss_pred EEEEEEEeecCC--CCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc----
Q 040877 5 TLELKVNSCSDL--KAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD---- 78 (281)
Q Consensus 5 ~LeVtViSAkdL--k~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~---- 78 (281)
.++|+|+.|+++ ......+..||||++++.-...+ .++.||++++ ++.||+|||+|.|.|.....
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~--------~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R 73 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEE--------PQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQR 73 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCC--------CceeecCccc-CCCCCcccceEEEEeccccchhhh
Confidence 568888888885 45555578999999997322111 1689999986 59999999999999964310
Q ss_pred CCCceEEEEEEEECCccC-CCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 79 NCNHLFIAFDLYSEGVIY-GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~-gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
...+..|.|+||+++.|+ +|++||++.|+|..|..+.. ...+++|.+......|.|++.+++..
T Consensus 74 ~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~---~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 74 VFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE---IHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred hccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc---ceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 011247999999999764 69999999999999977542 24488887744456789999999864
No 80
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.72 E-value=5.7e-17 Score=131.51 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=82.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|+|+|++|++|...+.+++.||||+|.+.++..+. .+.||++++ ++.||+|||+|.|. +......
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~--------~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~-- 82 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKA--------TKLRTKTVH-KTRNPEFNETLTYYGITEEDIQ-- 82 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCC--------Cceeeeeec-CCCCCCccceEEEcCCCHHHhC--
Confidence 47899999999999998888999999999997653221 578999986 58999999999996 4322111
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
...|.|+|+|.+.+ ++++||++.++|++|..+.
T Consensus 83 ~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 83 RKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred CCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCc
Confidence 24899999999987 8999999999999998753
No 81
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=4.4e-17 Score=136.70 Aligned_cols=99 Identities=19% Similarity=0.342 Sum_probs=82.6
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|.|+|++|+||+..+..+..||||+|.+.++..+ ++.++||++.+ ++.||+|||+|.|.|....+. .
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~-------~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~--~ 83 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQ-------EISKSKTSIRR-GQPDPEFKETFVFQVALFQLS--E 83 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCc-------ceeeccceeec-CCCCCcEeeeEEEECCHHHhC--c
Confidence 4789999999999999888889999999999764211 12467999976 689999999999999864432 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|++.+.+.++++||++.+++...
T Consensus 84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred cEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 58999999999888999999999998754
No 82
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=4.4e-17 Score=140.22 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-ccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-VDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-~~~~~ 81 (281)
.+.|+|+|++|+||+..+..+..||||+|.+..+..+ ..++||++++ ++.||+|||+|.|.+... ...
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~--------~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~-- 94 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSK--------KSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLS-- 94 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCC--------CcceeCCccC-CCCCCCCCCEEEEecCCHHHhC--
Confidence 4789999999999999988899999999999754321 1578999986 489999999999986422 221
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
...|.|+|||.+.+++|++||++.+.+.++..
T Consensus 95 ~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 95 QACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 24899999999988889999999999999864
No 83
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.72 E-value=4.8e-17 Score=137.15 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=81.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.++|.|+|++|+||+.....+..||||+|++.+++.+ +.|+||++.++...||+|||+|.|+|.... . .
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~--------~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~-~ 81 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL--------LYKKKTRLVKSSNGQVKWGETMIFPVTQQE--H-G 81 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc--------ceeecCccEECCCCCceecceEEEeCCchh--h-e
Confidence 4789999999999998654566799999999987543 368999997753357999999999998642 2 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDL 111 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL 111 (281)
..|.|+|+|.+..++|++||.+.++..+.
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 78999999999888999999999999763
No 84
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=5.4e-17 Score=130.36 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCe
Q 040877 20 NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYR 99 (281)
Q Consensus 20 ~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk 99 (281)
.+.|++||||+|.+.+. ...||++++ ++.||+|||+|.|.+.+.. ...|.|+|+|.+.+ +|+
T Consensus 8 ~~~G~~dPYv~v~v~~~------------~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~-~d~ 69 (111)
T cd04052 8 SKTGLLSPYAELYLNGK------------LVYTTRVKK-KTNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDR-HDP 69 (111)
T ss_pred ccCCCCCceEEEEECCE------------EEEEEeeec-cCCCCccCCceEEEecCcC----CCEEEEEEEECCCC-CCC
Confidence 45689999999999652 367899875 5899999999999997542 24799999999988 999
Q ss_pred eeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 100 SIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 100 ~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
+||++.|+|.+++.... ....||.|.. +.+|.|+|++.|.|+
T Consensus 70 ~iG~~~v~L~~l~~~~~--~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 70 VLGSVSISLNDLIDATS--VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred eEEEEEecHHHHHhhhh--ccceeEECCC---CCCCEEEEEEEEecC
Confidence 99999999999986432 2356787743 678999999999883
No 85
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.71 E-value=8.7e-17 Score=131.76 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=91.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|.|+|++|++|+..+..+..||||+|.+.+.+.+. .++||++.+ ++.||.|||+|.|.+..... .
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~--------~~~rT~v~~-~~~~P~wne~f~~~~~~~~~---~ 79 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNE--------TKQKTKTIK-KTLNPVWNETFTFDLKPADK---D 79 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCC--------ceecceeec-CCCCCCccceEEEeCCchhc---C
Confidence 37899999999999988878899999999997643221 578999976 58999999999999875422 1
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
..|.|+|+|.+.++++++||.+.++|+++... ....||.|.+.
T Consensus 80 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~ 122 (131)
T cd04026 80 RRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQ 122 (131)
T ss_pred CEEEEEEEECCCCCCcceeEEEEEeHHHhCcC----ccCceEECcCc
Confidence 37999999999877899999999999999854 24678888763
No 86
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.69 E-value=7e-16 Score=131.57 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=93.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|.|++|++|...+ ++||.|.+++. ...||++.. ++.||.|||.|.|...... .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~------------~vaRT~v~~-~~~nP~W~E~F~f~~~~~~-----~ 67 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKT------------LYARTTSKL-KTDTLFWGEHFEFSNLPPV-----S 67 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCE------------EEEEEEEEc-CCCCCcceeeEEecCCCcc-----c
Confidence 57999999999998653 89999999873 357999975 5889999999999865432 3
Q ss_pred EEEEEEEECCc-c---CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc----------ceEEEEEEEEeeeE
Q 040877 84 FIAFDLYSEGV-I---YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP----------NGVLSFCYKLKGMT 147 (281)
Q Consensus 84 ~L~~eV~d~~~-~---~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~----------~G~L~Lsl~f~p~~ 147 (281)
.|.|.|+.++. . .++.+||.+.||+.++..+. ....||+|...++++ .+.|++.++|.++.
T Consensus 68 ~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~---~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 68 VITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQ---FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred EEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCC---cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 68888865442 2 26789999999999999653 457899999876553 26999999999853
No 87
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.69 E-value=3.6e-16 Score=126.66 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=83.5
Q ss_pred EEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEE
Q 040877 9 KVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFD 88 (281)
Q Consensus 9 tViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~e 88 (281)
-.|+|++|.+.+.+++.||||+|.+.+....+ ...+.||++++ ++.||+|||+|.|.+.... ...|.|+
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~------~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~----~~~l~~~ 73 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQ------WVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE----VQKLRFE 73 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCc------eEEeccEeEeC-CCCCCCceEEEEEEEEeEe----eeEEEEE
Confidence 35999999999999999999999998753000 01368999986 5899999999999875321 2379999
Q ss_pred EEECCc----cCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 89 LYSEGV----IYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 89 V~d~~~----~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
|||.+. +++|++||++.+++.+|+.+.. ...++.|..
T Consensus 74 V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~---~~~~~~l~~ 114 (120)
T cd04048 74 VYDVDSKSKDLSDHDFLGEAECTLGEIVSSPG---QKLTLPLKG 114 (120)
T ss_pred EEEecCCcCCCCCCcEEEEEEEEHHHHhcCCC---cEEEEEccC
Confidence 999986 7789999999999999997642 356777743
No 88
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.5e-16 Score=129.13 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=78.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|+||+..+.+++.||||+|.+.+.. .+.||++++ ++.||+|||+|.|.+.... ...
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-----------~~~kT~~v~-~t~nP~Wne~f~f~~~~~~----~~~ 64 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-----------INDRDNYIP-NTLNPVFGKMFELEATLPG----NSI 64 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCee-----------ccceeeEEE-CCCCCccceEEEEEecCCC----CCE
Confidence 389999999999999989999999999996531 245777766 4999999999999986432 138
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
|.|+|+|.+.+++|++||++.++|++...
T Consensus 65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 65 LKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 99999999988889999999999998774
No 89
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.68 E-value=2.9e-16 Score=131.34 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=87.5
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-------
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD------- 78 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~------- 78 (281)
|+|+|++|+||+.. ..++.||||+|.+.+. .+ ..++||++++ ++.||+|||+|.|.+.....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~--------~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~ 69 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SK--------TDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFK 69 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-Cc--------CCeeccceee-CCCCCCcceEEEEEccccccccccccc
Confidence 68999999999988 7789999999999853 11 1578999986 48999999999999976411
Q ss_pred ----CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 79 ----NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 79 ----~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.-....|.|+|+|.+.++++++||++.|+|.++.... ....||.|...
T Consensus 70 ~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~---~~~~W~~L~~~ 121 (137)
T cd08675 70 VEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAG---SHQAWYFLQPR 121 (137)
T ss_pred cccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCC---cccceEecCCc
Confidence 0023589999999998778999999999999998542 24677877653
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.68 E-value=8.4e-16 Score=126.94 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=68.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||+ +..||||++.+++...+. .+.||++++ ++.||+|||+|.|.+.. ...|
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~--------~~~KTk~i~-~TlnPvWnE~F~i~l~~------s~~L 60 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFV--------KKAKTRVCR-DTTEPNWNEEFEIELEG------SQTL 60 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccc--------eeeeeeeec-CCCCCccceEEEEEeCC------CCEE
Confidence 689999999996 348999999997642211 478999986 59999999999999973 1389
Q ss_pred EEEEEEC-------CccCCCeeeEEEEEech
Q 040877 86 AFDLYSE-------GVIYGYRSIGKVHVPLK 109 (281)
Q Consensus 86 ~~eV~d~-------~~~~gDk~IG~v~VpL~ 109 (281)
+|.|||. +..+.|++||.+.|.|.
T Consensus 61 ~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 61 RILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 9999997 34567999988888884
No 91
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.66 E-value=2.9e-16 Score=174.65 Aligned_cols=119 Identities=16% Similarity=0.310 Sum_probs=99.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.|.|+|++|+||+ +.++++||||+|.+++. .++||+|++ ++.||+|||+|+|.+.++.. ..
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~------------~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~---~~ 2041 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG------------PPRQTKVVS-HSSSPEWKEGFTWAFDSPPK---GQ 2041 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCC------------CcccccccC-CCCCCCcccceeeeecCCCC---CC
Confidence 89999999999998 55899999999999753 467999987 58999999999999886543 23
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceE---EEEEEEEee
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGV---LSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~---L~Lsl~f~p 145 (281)
.|+|+|||+|.| +++.+|.+.|+|.++..+. ....+|.|.+ +|++.|. |++.++|.+
T Consensus 2042 ~l~iev~d~d~f-~kd~~G~~~i~l~~vv~~~---~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2042 KLHISCKSKNTF-GKSSLGKVTIQIDRVVMEG---TYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ceEEEEEecCcc-CCCCCceEEEEHHHHhcCc---eeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 799999999987 6669999999999999753 3467888864 6777887 999998864
No 92
>PLN02223 phosphoinositide phospholipase C
Probab=99.64 E-value=2.6e-15 Score=150.12 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=96.2
Q ss_pred eEEEEEEEeecCCC-C----CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc
Q 040877 4 STLELKVNSCSDLK-A----FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD 78 (281)
Q Consensus 4 g~LeVtViSAkdLk-~----~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~ 78 (281)
++|.|+||+|++|. + .+.....||||+|.|.|.+.|. .++||+| .+||.||+|||+|.|.|....
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~--------~~~kT~v-~nNg~nPvWne~F~F~i~~PE- 478 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDE--------KIMKTTV-KNNEWKPTWGEEFTFPLTYPD- 478 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCc--------ceeEEEe-CCCCcCceecceeEEEEEccC-
Confidence 57999999999874 1 1334568999999999987764 4667865 578999999999999997654
Q ss_pred CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 79 NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.+.|+|+|+|+|...+|++||++++||.+|..|+ ...+|++.+|++---..|-++|
T Consensus 479 ---LAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy------R~VpL~~~~g~~l~~~~Ll~~f 534 (537)
T PLN02223 479 ---LALISFEVYDYEVSTADAFCGQTCLPVSELIEGI------RAVPLYDERGKACSSTMLLTRF 534 (537)
T ss_pred ---ceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc------eeEeccCCCcCCCCCceEEEEE
Confidence 3699999999997778999999999999999986 2458888888753334444444
No 93
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=1.6e-15 Score=130.14 Aligned_cols=103 Identities=19% Similarity=0.335 Sum_probs=78.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhh---------ccc-------cceEEeeecCCCCCCCee
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQR---------QTC-------LQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~---------~~~-------~~k~KTkV~~~gg~NPvW 65 (281)
....|+|+|++|+||...+..|++||||+|.+.+.....+.++ ..+ ....||++++ ++.||+|
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPVW 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCcc
Confidence 3478999999999999999899999999999964311000000 000 0247899875 5899999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
||+|.|.+.... ...|.|+|+|.+ |++||++.++|.++..
T Consensus 105 nE~F~f~v~~~~----~~~L~i~V~D~d----d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 105 NETFRFEVEDVS----NDQLHLDIWDHD----DDFLGCVNIPLKDLPS 144 (153)
T ss_pred ccEEEEEeccCC----CCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence 999999997532 148999999987 8999999999999983
No 94
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.9e-15 Score=148.12 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=103.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|.|+|+.|+||...+..|..||||++++..+.. .|.||+|.+ ++.||+|||+|.|.|....+..
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~----------~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~-- 232 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKK----------GKFKTRVHR-KTLNPVFNETFRFEVPYEELSN-- 232 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCC----------Ccceeeeee-cCcCCccccceEeecCHHHhcc--
Confidence 467999999999999988667899999999998731 689999976 6999999999999987544433
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC---CCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG---HGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~---~GK~~G~L~Lsl~f~p 145 (281)
..|.|.|+|.|+|.++++||++.++|.++..... ...|+.+... ..+..|+|-|++.+.+
T Consensus 233 ~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~---~~~w~~l~~~~~~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 233 RVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST---TLFWKDLQPSSTDSEELAGELLLSLCYLP 295 (421)
T ss_pred CEEEEEEEecCCcccccEEEEEEecCcccccccc---ceeeeccccccCCcccccceEEEEEEeec
Confidence 4999999999999999999999999888766532 3456665543 2223389999999988
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.62 E-value=4.7e-15 Score=117.85 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred EEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEE
Q 040877 8 LKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAF 87 (281)
Q Consensus 8 VtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~ 87 (281)
+-.++|++|+..+.+++.||||+|.+.+.... ...+.||++++ ++.||+|| +|.|.+.......-...|.|
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~-------~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~ 74 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGT-------WVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKI 74 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCC-------EEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEE
Confidence 44689999999999999999999999764200 01468999987 58999999 78887654221111248999
Q ss_pred EEEECCccCCCeeeEEEEEechhhhcc
Q 040877 88 DLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 88 eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
+|+|++.+++|++||++.++|.+|...
T Consensus 75 ~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 75 EVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 999999888899999999999999854
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.62 E-value=4e-15 Score=110.16 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=72.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|+|+|++|+||...+..++.||||++.+.+... .+.+|++.+ ++.||.|||+|.|.+..... ..|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~----------~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~----~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES----------TKYKTKVKK-NTSNPVWNEEFEFPLDDPDL----DSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC----------EEEEECCBS-SBSSEEEEEEEEEEESHGCG----TEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee----------eeeeeeeee-ccccceeeeeeeeeeecccc----cce
Confidence 799999999999988788999999999987531 368999986 47999999999999875432 259
Q ss_pred EEEEEECCccCCCeeeEEEE
Q 040877 86 AFDLYSEGVIYGYRSIGKVH 105 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~ 105 (281)
.|+|++.+.++.|++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999887799999985
No 97
>PLN02952 phosphoinositide phospholipase C
Probab=99.61 E-value=6.4e-15 Score=149.44 Aligned_cols=122 Identities=14% Similarity=0.222 Sum_probs=100.5
Q ss_pred eEEEEEEEeecCCCC------CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLKA------FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk~------~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
++|.|+||+|++|+. .+.+...||||+|.|.|.+.|. .++||+++++ +.||+|||+|.|.+....
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~--------~~~kTkvi~n-N~nPvWnE~F~F~i~~PE 540 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADN--------AKKKTKIIED-NWYPAWNEEFSFPLTVPE 540 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCC--------cceeeeeccC-CCCcccCCeeEEEEEcCC
Confidence 579999999999842 1223456999999999977664 6779999876 599999999999988543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
.+.|+|+|+|+|...+|++||++++||.+|..|+ .+.+|++.+|+..+.++|-++|.
T Consensus 541 ----LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 541 ----LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ----ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 3689999999998778999999999999999986 25688888999888777777764
No 98
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.53 E-value=6.8e-14 Score=141.90 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=90.8
Q ss_pred eEEEEEEEeecCCC----C--CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLK----A--FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk----~--~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
.+|.|+|++++++. . .+.+...||||+|.|.|.+.|. .++||++. ++|.||+|||+|.|.+....
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~--------~~~kT~v~-~n~~nP~Wneef~F~l~vPE 539 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE--------VMEKTKIE-YDTWTPIWNKEFIFPLAVPE 539 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC--------cccceecc-CCCCCCccCCeeEEEEEcCc
Confidence 57999999999873 1 1334557999999999977664 56789975 56899999999999987543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~ 133 (281)
.+.|+|+|+|++...+|++||+.++||.+|..|+ ...+|++.+|..
T Consensus 540 ----LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy------R~V~L~~~~G~~ 585 (598)
T PLN02230 540 ----LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI------HAVPLFNRKGVK 585 (598)
T ss_pred ----eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc------ceEeccCCCcCC
Confidence 4799999999997778999999999999999986 234788887764
No 99
>PLN02228 Phosphoinositide phospholipase C
Probab=99.52 E-value=1.9e-13 Score=138.02 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=97.1
Q ss_pred eEEEEEEEeecCCCC---C---CCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee-ceEEEEEeccC
Q 040877 4 STLELKVNSCSDLKA---F---NLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW-NHMMKFDIKAF 76 (281)
Q Consensus 4 g~LeVtViSAkdLk~---~---~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW-NEtf~F~V~~~ 76 (281)
.+|+|+||+|++|.. . +.+...|+||+|.|.|.+.+. .+.||+++++ |.||+| ||+|.|.+...
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~--------~~~rTk~~~n-~~nP~W~~e~f~F~~~~p 501 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDT--------VSYRTETAVD-QWFPIWGNDEFLFQLRVP 501 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCC--------CcceeeccCC-CCCceECCCeEEEEEEcC
Confidence 369999999999731 1 223458999999999977664 5779999865 689999 99999998754
Q ss_pred ccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEEee
Q 040877 77 VDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKLKG 145 (281)
Q Consensus 77 ~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f~p 145 (281)
. .++|+|+|+|++...+|++||+++|||.+|..|+ ...+|++.+|+. ...|-+.++|.+
T Consensus 502 E----LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY------R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 502 E----LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV------RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred c----eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe------eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 3 4799999999987778999999999999999886 244888888874 345666666554
No 100
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.51 E-value=1.7e-13 Score=138.76 Aligned_cols=111 Identities=14% Similarity=0.235 Sum_probs=90.4
Q ss_pred eEEEEEEEeecCCC----C--CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc
Q 040877 4 STLELKVNSCSDLK----A--FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV 77 (281)
Q Consensus 4 g~LeVtViSAkdLk----~--~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~ 77 (281)
++|.|+|++++++. . .+.+...||||+|.|.|.+.|. .++||+++++| .||+|||+|.|.+....
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~--------~~~rTk~v~nn-~nP~W~e~f~F~i~~Pe 522 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDT--------VMKKTKTLEDN-WIPAWDEVFEFPLTVPE 522 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCc--------ceeeeEecCCC-CCcccCCeeEEEEEcCc
Confidence 57999999999852 2 2234567999999999876664 57799998865 79999999999987543
Q ss_pred cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc
Q 040877 78 DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP 133 (281)
Q Consensus 78 ~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~ 133 (281)
.+.|+|+|+|+|...+|++||++.+||.+|..|+ ...+|++.+|..
T Consensus 523 ----LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy------R~V~L~~~~g~~ 568 (581)
T PLN02222 523 ----LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI------RAFPLHSRKGEK 568 (581)
T ss_pred ----eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc------ceEEccCCCcCC
Confidence 4799999999987778999999999999999986 244788887764
No 101
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.51 E-value=1.2e-13 Score=141.41 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=97.8
Q ss_pred EEEEEEEeecCCC-CCCC--C-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 5 TLELKVNSCSDLK-AFNL--F-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 5 ~LeVtViSAkdLk-~~~~--~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
+|.|+|++++++. ..+. + ...||||.|+|.|-+.|+ .++||+++++||.||.|+|+|+|.|..++
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~--------~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE--- 685 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADC--------AEQKTKVVKNNGFNPIWDEEFEFQLSVPE--- 685 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccch--------hhhhceeeccCCcCcccCCeEEEEEeccc---
Confidence 6999999999664 3322 2 457999999999988876 67899988999999999999999998664
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKL 143 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f 143 (281)
.+.|+|+|.|+|..++|+|+|+.++||.+|.+|+- ..+|.+..|+. .-.|-+.+++
T Consensus 686 -LAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR------hVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 686 -LALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR------HVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred -eeEEEEEEEecCCCCcccccceeeccHHHhhCcee------eeeecCCCCccccceeEEEEEEE
Confidence 36999999999988889999999999999999862 34777777763 3444444444
No 102
>PLN02270 phospholipase D alpha
Probab=99.50 E-value=2e-13 Score=141.61 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=102.3
Q ss_pred eEEEEEEEeecCCCCCC------------------CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee
Q 040877 4 STLELKVNSCSDLKAFN------------------LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~------------------~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW 65 (281)
|+|+|||++|++|++.+ ..++.|+||.|.+.+. ...||+++.+...||+|
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a------------~v~rtr~~~~~~~~p~w 75 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA------------RVGRTRKIENEPKNPRW 75 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc------------EEEEEeecCCCCCCCcc
Confidence 89999999999998631 0135699999999874 57799999765679999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcc--e-EEEEEEE
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPN--G-VLSFCYK 142 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~--G-~L~Lsl~ 142 (281)
||+|.+.+.... ..|.|.|+|.+. .|..+||.+.||+.+|+.|. .-..||++.+.+||+. | .|+|+++
T Consensus 76 ~e~f~i~~ah~~-----~~v~f~vkd~~~-~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~~~~ 146 (808)
T PLN02270 76 YESFHIYCAHMA-----SNIIFTVKDDNP-IGATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHVKLQ 146 (808)
T ss_pred ccceEEeeccCc-----ceEEEEEecCCc-cCceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEEEEE
Confidence 999999999765 378999999995 58889999999999999874 2456899999999853 3 9999999
Q ss_pred Eeee
Q 040877 143 LKGM 146 (281)
Q Consensus 143 f~p~ 146 (281)
|.++
T Consensus 147 f~~~ 150 (808)
T PLN02270 147 YFEV 150 (808)
T ss_pred EEEc
Confidence 9995
No 103
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.49 E-value=3.7e-13 Score=100.93 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|+|++|++|......+..+|||++.+.+.. ....+|++.++ +.||.|||+|.|.+.... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~----------~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~----~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP----------KEKKKTKVVKN-TLNPVWNETFEFEVPPPE----LAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc----------cceEeeeEecC-CCCCcccceEEEEecCcc----cCE
Confidence 478999999999988766789999999998642 14788998764 569999999999998642 248
Q ss_pred EEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
|.|+|++.+..+++.+||.+.++|.++..+.
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence 9999999987667999999999999998764
No 104
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=4.3e-14 Score=137.88 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=92.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
...|+|+|.+|+||...+..|-.||||++.+..++... .|+||++++ .++||+|||+|+|.+..... ++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~--------sKqKTkTik-~~LNP~wNEtftf~Lkp~Dk-dr- 247 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNE--------SKQKTKTIK-ATLNPVWNETFTFKLKPSDK-DR- 247 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcch--------hhhhhhhhh-hhcCccccceeEEecccccc-cc-
Confidence 45799999999999999999999999999999875432 688999987 49999999999999986432 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
.|.|||||.|+..+|+++|...+.+++|+.... ..||.|++
T Consensus 248 -RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~----~GWyKlLs 288 (683)
T KOG0696|consen 248 -RLSIEVWDWDRTSRNDFMGSLSFGISELQKAPV----DGWYKLLS 288 (683)
T ss_pred -eeEEEEecccccccccccceecccHHHHhhcch----hhHHHHhh
Confidence 689999999988899999999999999998642 34665554
No 105
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.42 E-value=8.8e-13 Score=139.62 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=106.7
Q ss_pred ceEEEEEEEeecCCCCCC--CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFN--LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~--~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
-|.|+|+|.+|++|+..+ ..+..|||+++...+. ...||++.+ +..||+|||+|.+.|....+
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r------------~~gkT~v~~-nt~nPvwNEt~Yi~lns~~d-- 499 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR------------VIGKTRVKK-NTLNPVWNETFYILLNSFTD-- 499 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccc------------cCCccceee-ccCCccccceEEEEecccCC--
Confidence 378999999999999887 4588999999997653 456999965 69999999999999986542
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeeeEEeecCCCC
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGMTIKKGEIPS 155 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~~~~~~~~~~ 155 (281)
.|.++|||.+.+..|+.+|.+.++|..|.+... ....-|++++ +.|..|+|+++++|.|..-.+++-.+
T Consensus 500 ---~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~--~~ne~~e~~~-~~k~vGrL~yDl~ffp~~e~k~~~~~ 568 (1227)
T COG5038 500 ---PLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPV--KKNELYEFLR-NTKNVGRLTYDLRFFPVIEDKKELKG 568 (1227)
T ss_pred ---ceeEEEEeccccCCcceeeeEEechHHhhhccc--cccceeeeec-cCccceEEEEeeeeecccCCcccccc
Confidence 689999998888899999999999999998642 3344566654 78999999999999994333444333
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.40 E-value=2.8e-12 Score=94.99 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=77.0
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
|.|.|++|++|.........++||++.+.+. ...+|++.. ++.||.|||.|.|.+.... ...|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~------------~~~~T~~~~-~~~~P~w~~~~~~~~~~~~----~~~l 63 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK------------QKFKTKVVK-NTLNPVWNETFEFPVLDPE----SDTL 63 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC------------ceEecceeC-CCCCCcccceEEEEccCCC----CCEE
Confidence 5799999999988766788999999999762 477898875 4789999999999998631 2479
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhh
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLI 112 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~ 112 (281)
.|+|++.+...++++||.+.+++.++.
T Consensus 64 ~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 64 TVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 999999987767999999999999998
No 107
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.38 E-value=3.3e-12 Score=107.53 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=80.3
Q ss_pred EEEEEEEeecCCCC--CCCCCC--CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCC--CeeceEEEEEeccCc-
Q 040877 5 TLELKVNSCSDLKA--FNLFNR--LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGN--PEWNHMMKFDIKAFV- 77 (281)
Q Consensus 5 ~LeVtViSAkdLk~--~~~~gk--~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~N--PvWNEtf~F~V~~~~- 77 (281)
.|+|+|.+|+|+.. .+..|+ .|+||++++.+... .+++|.|+. +.+| |+||++|.|.+.-..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~----------~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~ 69 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEE----------DKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPA 69 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcc----------cccccceEE-ecCCCCcEEeEEEEEeeecCCc
Confidence 38999999999654 334565 89999999998521 588999987 4778 999999999887411
Q ss_pred ------------------cCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 78 ------------------DNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 78 ------------------~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.......|.|+|||.|.+..|++||++.++|..|.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 70 EKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 11123689999999999989999999999999998865
No 108
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.5e-12 Score=124.48 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=83.4
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
.+.|+|.|++|++|+..+..+-.|+||++++..+.. ++.|+||.+.+ ++.||+|||+|.|.|+...+. .
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~--------~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l~--~ 365 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDK--------RLSKKKTSVKK-KTLNPVFNETFVFDVPPEQLA--E 365 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCc--------eeeeeeeeccc-CCCCCcccccEEEeCCHHHhh--e
Confidence 478999999999999998888899999999987642 24788999865 699999999999999865442 3
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechh
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
+.|.|+|+|++.++.+++||.+.+....
T Consensus 366 ~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 366 VSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eEEEEEEEEcccccccceeeEEEecCCC
Confidence 7999999999999999999998888765
No 109
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.9e-12 Score=129.49 Aligned_cols=116 Identities=19% Similarity=0.279 Sum_probs=92.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..+++||+.|++|..++.-|+.||||.+.++. .|+||+++. +..||+|||+|+|.+.+..+
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~k-------------tkrrtrti~-~~lnpvw~ekfhfechnstd----- 355 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-------------TKRRTRTIH-QELNPVWNEKFHFECHNSTD----- 355 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecc-------------cchhhHhhh-hccchhhhhheeeeecCCCc-----
Confidence 46899999999999999999999999999965 577899875 68999999999999986543
Q ss_pred EEEEEEEECCcc-----------CCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC--cceEEEEEEEE
Q 040877 84 FIAFDLYSEGVI-----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK--PNGVLSFCYKL 143 (281)
Q Consensus 84 ~L~~eV~d~~~~-----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK--~~G~L~Lsl~f 143 (281)
.|.+.|||+|.- ..|+++|...|-+..|..+- .+||.|-....| ..|.|+|.|.+
T Consensus 356 rikvrvwded~dlksklrqkl~resddflgqtvievrtlsgem-----dvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 356 RIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM-----DVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred eeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecccch-----hhhcchhhccchhhccceEEEEEEE
Confidence 678889998732 25889999999998875432 578888654444 56877666654
No 110
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.29 E-value=1.4e-11 Score=126.84 Aligned_cols=106 Identities=24% Similarity=0.370 Sum_probs=89.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeec-eEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWN-HMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWN-Etf~F~V~~~~~~~~~ 82 (281)
-+|.|.||.||.|.+.+ .+-..|||.|+|.|.+.|. .+++|.++.+||.||+|| |+|+|.|.++. .
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt--------~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe----~ 1131 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDT--------NKFKTTVVNDNGLNPIWNPEKFTFEIYNPE----F 1131 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCC--------CceEEEEeccCCCCCCCCCcceEEEeeCCc----e
Confidence 47899999999999654 3556899999999987775 678888888899999999 99999998764 4
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRT 128 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~ 128 (281)
++|+|+|+++|.|+...+||.++.|++.+..|+ .+.+|++
T Consensus 1132 A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf------RsVpLkN 1171 (1267)
T KOG1264|consen 1132 AFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF------RSVPLKN 1171 (1267)
T ss_pred EEEEEEEecccccCCcceeeeeecchhhhhccc------eeeeccc
Confidence 799999999998777789999999999999886 3446655
No 111
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.20 E-value=5.3e-11 Score=96.86 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=71.2
Q ss_pred EEEEEEeecCCCCCC---CCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 6 LELKVNSCSDLKAFN---LFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 6 LeVtViSAkdLk~~~---~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
|+|+|.+|+||.... +++++|+||+|.+++. .+.||++. +||+|||+|.|+|.. .+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~------------~kaRTr~s----rnd~WnE~F~i~Vdk----~n- 59 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDV------------ERARTKPS----RNDRWNEDFEIPVEK----NN- 59 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCE------------EEEeccCC----CCCcccceEEEEecC----Cc-
Confidence 789999999999877 6788999999999764 58899874 799999999999952 22
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
.+.|.|||+.. ...-.||..=|.|+|+.+.-
T Consensus 60 -Eiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 60 -EEEVIVYDKGG-DQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred -EEEEEEEeCCC-CeecceeeehhhHHHHHHHH
Confidence 78899998752 23346999999999998753
No 112
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.19 E-value=5.6e-11 Score=126.21 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=97.9
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
+|.|+|.+++|+||+..+..+..||||++.+.+. ..+||+++++ ++||+|||.|.+.|.+...
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k------------~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~---- 1101 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK------------SVYKTKVVKK-TLNPVWNEEFTIEVLNRVK---- 1101 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecce------------ecccccchhc-cCCCCccccceEeeecccc----
Confidence 4789999999999999999999999999999874 4789999875 9999999999999986432
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCC--CCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGH--GKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~--GK~~G~L~Lsl~f~p 145 (281)
-.|.|.|+|.+.-.+|++||.+.++|..|..+.. ..+.-+++.. +...|.++....|.+
T Consensus 1102 D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~----~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1102 DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT----TNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ceEEEEEeecccCCCccccccccccHhhcCcCCc----cceeeeccCcceEecccEeecceecch
Confidence 3788999999877789999999999999998752 1122222322 345677777777766
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.17 E-value=9.9e-11 Score=119.23 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=104.0
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|+|.+||||...+..|..|+||.|.++.. ...||.++. .+..|-|.|+|.|.|+-.. -
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E------------~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-----~ 66 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE------------EVCRTATVE-KSLCPFFGEEFYFEIPRTF-----R 66 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecch------------hhhhhhhhh-hhcCCccccceEEecCcce-----e
Confidence 579999999999999988899999999999875 467899986 4999999999999998654 3
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
.|.|-|||+| +.+|+.||.+.|.=.+|..- .|...|.+++-.+.+...+|+|||+++|.+
T Consensus 67 ~l~fYv~D~d-~~~D~~IGKvai~re~l~~~-~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 67 YLSFYVWDRD-LKRDDIIGKVAIKREDLHMY-PGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred eEEEEEeccc-cccccccceeeeeHHHHhhC-CCCccceeccccCCChhhceeEEEEEEecc
Confidence 8999999999 88999999999998888653 343445555555778889999999999998
No 114
>PLN02352 phospholipase D epsilon
Probab=99.15 E-value=2.8e-10 Score=118.14 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=91.4
Q ss_pred eEEEEEEEeecCCCCC----CCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc
Q 040877 4 STLELKVNSCSDLKAF----NLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD 78 (281)
Q Consensus 4 g~LeVtViSAkdLk~~----~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~ 78 (281)
|+|++||.+|+-+... +.. ...|+||.|.+.+. ...|| ++..||+|||+|.+.+....+
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~------------~v~rt----~~~~~p~w~e~f~i~~ah~~~ 73 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNK------------KVAKT----SHEYDRVWNQTFQILCAHPLD 73 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCc------------EEecC----CCCCCCccccceeEEeeeecC
Confidence 7899999999855432 111 12299999999874 45677 345699999999999986542
Q ss_pred CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCc-ce-EEEEEEEEeeeE
Q 040877 79 NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP-NG-VLSFCYKLKGMT 147 (281)
Q Consensus 79 ~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~-~G-~L~Lsl~f~p~~ 147 (281)
..|.|.|+| +-.+||.+.||+.+|+.|.. ....||++.+.+||+ .| .|+|+++|.++.
T Consensus 74 ----~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 74 ----STITITLKT-----KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ----CcEEEEEec-----CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 268899987 57899999999999998742 257899999999985 45 999999999963
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.95 E-value=2.7e-09 Score=107.39 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=103.5
Q ss_pred ceEEEEEEEeecCCCCCCCC-CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceE-EEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNLF-NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHM-MKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~-gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEt-f~F~V~~~~~~~ 80 (281)
.|+|-|+|..||+|+-.+.. ...|.||.|.+.+ ..+||.|..+ ..||.||.. |.|.|++..+.+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-------------~t~ktdvf~k-slnp~wnsdwfkfevddadlqd 67 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-------------TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQD 67 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-------------cceehhhhhh-hcCCcccccceEEecChhhhcc
Confidence 37899999999999988765 4569999999976 5889999875 899999965 999999765544
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhccc-------CCceEEEEEEEEcCCCCcceEEEEEEEEe
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF-------NGAVRFVRYQIRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~-------~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~ 144 (281)
..|+|.+.|+|.+..|+.||.+.|.+.-|+-.. .|..-..|+++.+.---.+|+||+.+++.
T Consensus 68 --eplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 68 --EPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred --CCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 389999999999999999999999999887533 13456789999876444889999988764
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=2.7e-08 Score=102.24 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=82.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
.+|.|.|+-|+|+-..|..|-.||||+|++.+.- +--.+..+||+|++ .+.||+++|+|+|.|+...-..+.+
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~------~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~A 1019 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKF------RFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETA 1019 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEecccc------ccccchhhhhhhhh-ccccchhhhheeeecCccccccccc
Confidence 4688899999999999988999999999997631 10112456999976 5999999999999998433222357
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
+|.|+|+|.|-+..|+|-|++.+-|.++-.
T Consensus 1020 m~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1020 MLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eEEEEeeccceecccccchHHHHhhCCCCC
Confidence 999999999977789999999999988754
No 117
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.3e-08 Score=96.64 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=97.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE--eccCccC
Q 040877 2 EWSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD--IKAFVDN 79 (281)
Q Consensus 2 e~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~--V~~~~~~ 79 (281)
|.++++.||..|++|+..++.+..|||++..+.....+ +.+.+|++.+ |+.||.|||+.... ..+.. .
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~k--------l~slr~~t~~-n~lN~~w~etev~~~i~~~~~-~ 160 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGK--------LNSLRTKTTR-NTLNPEWNETEVYEGITDDDT-H 160 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhh--------hhhhhHHhhc-cCcCcceeccceecccccchh-h
Confidence 45789999999999999999999999999999875432 3567888865 79999999986654 33332 1
Q ss_pred CCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCce-EEEEEEEE--cC--CC-CcceEEEEEEEEee
Q 040877 80 CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAV-RFVRYQIR--TG--HG-KPNGVLSFCYKLKG 145 (281)
Q Consensus 80 ~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~-~~vsy~L~--~~--~G-K~~G~L~Lsl~f~p 145 (281)
...+++.|+|++.+..++++|+.+|+|+.|........ .++...+- +. .. ..+|.|.+++.|..
T Consensus 161 --~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 161 --LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS 230 (362)
T ss_pred --hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence 34788999999989899999999999999887542111 22233332 11 12 46789988888764
No 118
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.49 E-value=1.2e-07 Score=101.30 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=87.8
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE-eccCccCCC
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD-IKAFVDNCN 81 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~-V~~~~~~~~ 81 (281)
.++|.|-|.-||+|.-..-....||||+..+..++.+. .|+||+|.+ ++.||++||++..+ .+-..+.++
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~--------sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qR 1593 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKT--------SKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQR 1593 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHh--------hhhhhcccc-ccCCCchhhheeecCCchhhhhhh
Confidence 57899999999999765555678999999999986543 688999998 59999999999988 332223333
Q ss_pred ceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE
Q 040877 82 HLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR 127 (281)
Q Consensus 82 ~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~ 127 (281)
.|++.|+..+.+..+.++|.+.|+|.++--.. ....||+|-
T Consensus 1594 --eLQ~sVls~~~~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1594 --ELQVSVLSNGGLLENVFLGGVNIPLLKVDLLK---ESVGWYNLG 1634 (1639)
T ss_pred --eeeeeeecccceeeeeeeeeeecchhhcchhh---hhcceeecc
Confidence 78999999998888999999999999875432 123677763
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.36 E-value=6.9e-08 Score=99.29 Aligned_cols=131 Identities=18% Similarity=0.326 Sum_probs=92.1
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchh------hhh--------------ccccceEEeeecCCCCCCCee
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKK------EQR--------------QTCLQRQKTPTDREGGGNPEW 65 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~------~~~--------------~~~~~k~KTkV~~~gg~NPvW 65 (281)
|.|.+..|+||-+++..|..|||+...+.....+.+ +|| -+|+ +-|.|. ..+.||.|
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlI--katsvk-~~TLnPkW 192 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLI--KATSVK-KKTLNPKW 192 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHh--hhcccc-cccCCcch
Confidence 556778999999998889999999988875422211 111 1111 246664 46999999
Q ss_pred ceEEEEEeccCccCCCceEEEEEEEECCcc---------------------------------CC---CeeeEEEEEech
Q 040877 66 NHMMKFDIKAFVDNCNHLFIAFDLYSEGVI---------------------------------YG---YRSIGKVHVPLK 109 (281)
Q Consensus 66 NEtf~F~V~~~~~~~~~~~L~~eV~d~~~~---------------------------------~g---Dk~IG~v~VpL~ 109 (281)
||+|.|+|.+-. .+ .+++.+||.|.- +. |+|+|-+.|||.
T Consensus 193 ~EkF~F~IeDv~--tD--qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQ--TD--QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hhheeeehhccc--cc--eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999998643 23 788899976521 11 789999999999
Q ss_pred hhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 110 DLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 110 dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
++-... -.+|..++-|....|.+|.++|.+++..
T Consensus 269 EiP~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 269 EIPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred cCCcch--HHHHhccCcccccccccceEEEEEEEee
Confidence 987642 2234444444445678999999999875
No 120
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.26 E-value=2.9e-06 Score=88.95 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=84.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceE-EEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHM-MKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEt-f~F~V~~~~~~~~~ 82 (281)
.+|+|+|||++=|.+.+ ...||.|.+.|-+-+-. | +.+||++..+|+.||+|||. |.|.---.. +.
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~--R----k~~rtrt~~~n~~npvy~eepfvF~KVvLp---eL 769 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTI--R----KEFRTRTVQGNSFNPVYEEEPFVFRKVVLP---EL 769 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhh--h----hhhhhccccCCCCCcccccCCcccceeccc---ch
Confidence 57999999999998754 56999999998766542 2 57899999999999999985 888633211 24
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G 135 (281)
++|+|-|+++ ++++||.--+|+..|..|+ +++ -||+..+.+-+
T Consensus 770 A~lRiavyeE----ggK~ig~RIlpvd~l~~GY----rhv--~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 770 ASLRIAVYEE----GGKFIGQRILPVDGLNAGY----RHV--CLRSESNQPLT 812 (1189)
T ss_pred hheeeeeecc----CCceeeeeccchhcccCcc----eeE--EecCCCCCccc
Confidence 6899999975 4799999999999998886 344 45677676554
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.18 E-value=3.9e-06 Score=86.34 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=83.5
Q ss_pred EEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-----------c
Q 040877 9 KVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-----------V 77 (281)
Q Consensus 9 tViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-----------~ 77 (281)
.+++++++-... .+.+||||+|...+... . +..+|++.+ .+.||.|||.|.|.+... .
T Consensus 136 ~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~-~--------~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 136 HVLKTRQGLPII-NGQCDPFARVTLCGPSK-L--------KEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred hhhhhcccCcee-CCCCCcceEEeecccch-h--------hccccceee-eccCcchhhheeeeeccccccccchhcCcc
Confidence 344444443322 35599999999876422 1 346888876 489999999999999744 0
Q ss_pred cCCCceEEEEEEEE-CCccCCCeeeEEEEEechhhhcccCCceEEEEEEEE-cCCCC------cceEEEEEEEEee
Q 040877 78 DNCNHLFIAFDLYS-EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIR-TGHGK------PNGVLSFCYKLKG 145 (281)
Q Consensus 78 ~~~~~~~L~~eV~d-~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~-~~~GK------~~G~L~Lsl~f~p 145 (281)
...+.+.|++++|+ .+.+.+|.++|+++|++..+.+.. ....||.|+ +.+|. -.|.+++.+.+..
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s---~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKS---SPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhcc---CccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 11135789999998 555566999999999999988543 234577666 22332 3477777777765
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=8.5e-06 Score=77.83 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=75.8
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..|.|++|.|.+|...+..+-.||||.+++..+-.++ .|+||.+.+ ++.||++|+.|.|++....+.. .
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~--------fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa~--~ 301 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKK--------FKKKTQQKK-KTLNPEFDEEFFYDIGPGDLAY--K 301 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchh--------hcccCcchh-ccCCccccccccccCCccchhc--c
Confidence 4589999999999999988999999999998553332 688999865 5999999999999998765522 4
Q ss_pred EEEEEEEECCccCCCeeeEEEEEec
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPL 108 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL 108 (281)
.|.|.|+|++...+++++|-...-+
T Consensus 302 kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 302 KVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred eEEEeecccCCCcCccCCCcccccc
Confidence 7888999998655788888655433
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=2.6e-05 Score=80.10 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=86.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCcc-chhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGEL-KKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~-~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
..++|+|+.|.||+= ...|--.|||.|.|-|... ||| .|+.|++ +.|+-.|.+||+|.|.+...... ++
T Consensus 1125 hkvtvkvvaandlkw-qtsgmFrPFVEV~ivGP~lsDKK-------RK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~P-e~ 1194 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKW-QTSGMFRPFVEVHIVGPHLSDKK-------RKFSTKT-KSNNWAPKYNETFHFFLGNEGGP-EH 1194 (1283)
T ss_pred ceEEEEEEecccccc-hhccccccceEEEEecCcccchh-------hhccccc-cCCCcCcccCceeEEEeccCCCC-ce
Confidence 468999999999983 2345558999999986432 221 4677776 45789999999999999854332 35
Q ss_pred eEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC-CCCcce
Q 040877 83 LFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG-HGKPNG 135 (281)
Q Consensus 83 ~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~-~GK~~G 135 (281)
..|.|.|+|+=--..|+.||.+.++|.++.+.. .-..|++|-+. .....|
T Consensus 1195 YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kG---S~a~W~pLgrrihmDeTG 1245 (1283)
T KOG1011|consen 1195 YELQFCVKDYCFAREDRVVGLAVLQLRSVADKG---SCACWVPLGRRIHMDETG 1245 (1283)
T ss_pred EEEEEeehhheeecccceeeeeeeehhhHhhcC---ceeEeeeccccccccccc
Confidence 789999988764346899999999999998853 23567777542 333445
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.93 E-value=1.6e-05 Score=67.23 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=74.7
Q ss_pred EEEEEEeecCCCCC---------CC--C--CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEE
Q 040877 6 LELKVNSCSDLKAF---------NL--F--NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFD 72 (281)
Q Consensus 6 LeVtViSAkdLk~~---------~~--~--gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~ 72 (281)
|.|.|+.|-+|+.- ++ . --.+.||++.+.--+.+ .+.+|++.. ++..|.||+.++|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~---------e~r~TrtVA-rSFcPeF~Hh~Efp 70 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK---------ELRRTRTVA-RSFCPEFNHHVEFP 70 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC---------ceeeccchh-hhcCCCccceEEEe
Confidence 57889999999741 11 1 12699999997542211 577899886 49999999999999
Q ss_pred ec--------c---CccCCCceEEEEEEEECCcc----------CCCeeeEEEEEechhhhcccCCceEEEEEE
Q 040877 73 IK--------A---FVDNCNHLFIAFDLYSEGVI----------YGYRSIGKVHVPLKDLIDEFNGAVRFVRYQ 125 (281)
Q Consensus 73 V~--------~---~~~~~~~~~L~~eV~d~~~~----------~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~ 125 (281)
++ + .++--....|.|+||+++.- .+|=+||.+.||+.+|+....|- ..||+
T Consensus 71 c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGi--tGW~p 142 (143)
T cd08683 71 CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGI--TGWYP 142 (143)
T ss_pred cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCc--ccccc
Confidence 87 1 11111345899999986631 24557999999999999865442 34554
No 125
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.90 E-value=1e-05 Score=79.26 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=93.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCcc-CC--
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVD-NC-- 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~-~~-- 80 (281)
..|+++|++++++.-..--...|-||++++.-.. | ++ ++.||.|++ ++..|.++|.|.+.+..... +.
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D---~~----qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~f 437 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-D---SR----QKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREF 437 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccc-c---cc----ccCccceee-CCCCCCcccceeeeccCCCcccHHH
Confidence 3578889999888654423346889998875322 2 12 688999987 59999999999999985221 11
Q ss_pred ----CceEEEEEEEECCccCC-CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 81 ----NHLFIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 81 ----~~~~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
.+.-+.|+++++..|.+ |+++|++.|.|.-|...- .-+..|.|.+......|.|.+.+++..
T Consensus 438 qR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~c---ei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 438 QRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMC---EICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred HHHHHhcCeeEEEeeccccccccceeceeeeeehhhhccc---chhhceeccccccccCCeeEEEEEEec
Confidence 23578999999998765 999999999998887643 224567776633335689988888754
No 126
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.86 E-value=2.5e-05 Score=62.35 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=68.1
Q ss_pred EEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEE
Q 040877 7 ELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFI 85 (281)
Q Consensus 7 eVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L 85 (281)
=|||+.|+||.=... ...+..|++=-+.=..+ ...||.+ ++|..||+++|||.|.+....+. ...|
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kp----------v~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~--~V~L 68 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKP----------VHFKSSA-KEGSNDIEFMETFVFAIKLQNLQ--TVRL 68 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCC----------ccccchh-hcCCCChhHHHHHHHHHHHhhcc--ceEE
Confidence 489999999974332 23467777644432211 5788987 56899999999999999855443 3688
Q ss_pred EEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 86 AFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 86 ~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.|.|+.. .-+.+.||++.+.|+++-..
T Consensus 69 ~fsv~~~--~~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 69 VFKIQTQ--TPRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred EEEeecc--CCccceeeEEEeecccCCHH
Confidence 8888873 34789999999999987653
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.78 E-value=4.3e-05 Score=79.11 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=70.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
|.+.|||++|+ .++ .|+|..+-..|. +.+||.+.+ ++.||+|||.-.|.|..... +
T Consensus 54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~------------~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~---~- 109 (644)
T PLN02964 54 GIALLTLVGAE----MKF---KDKWLACVSFGE------------QTFRTETSD-STDKPVWNSEKKLLLEKNGP---H- 109 (644)
T ss_pred CeEEEEeehhh----hcc---CCcEEEEEEecc------------eeeeecccc-ccCCcccchhhceEeccCCc---c-
Confidence 67889999997 332 377777666664 799999964 69999999999999986432 2
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
+.+|.|+|.+.+..|+++|.+.+.|.++...
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence 5699999999998999999999999888764
No 128
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.70 E-value=2e-05 Score=83.58 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=74.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.++|.|++|-+|...|..|+.||||.|.+++.. ..-++.-+. ++.||++++.|.+...-..+ ..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~-----------~~d~~~yip-~tlnPVfgkmfel~~~lp~e----k~ 677 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR-----------TLDRAHYIP-NTLNPVFGKMFELECLLPFE----KD 677 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccch-----------hhhhhhcCc-CCCCcHHHHHHHhhcccchh----hc
Confidence 478999999999999999999999999997631 223455444 69999999999988764432 37
Q ss_pred EEEEEEECCccCCCeeeEEEEEechh
Q 040877 85 IAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 85 L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
|.++||+.|.+.+|+.||+..+.|..
T Consensus 678 l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 678 LIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred ceeEEEEeecccccchhhceehhhhh
Confidence 89999999998889999999999976
No 129
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.44 E-value=0.0084 Score=49.55 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCc---cC-C
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFV---DN-C 80 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~---~~-~ 80 (281)
.+.|+|.+..+++.. ...+.+.|-.++... ...+|.........=.|||+|.|.+.-.. .. -
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~---------~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~ 73 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSK---------GSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEF 73 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCc---------cceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcE
Confidence 578899999988872 233333333343110 13455555556678899999999876211 00 0
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEEeee
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKLKGM 146 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f~p~ 146 (281)
..-.|.|.|+....-+....||++.|.|+++..... ......+.|... -+.+..|++++.+..+
T Consensus 74 ~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~-~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 74 QPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC-KKSNATLSISISLSEL 137 (143)
T ss_pred eeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC-CCCCcEEEEEEEEEEC
Confidence 124788888876421223589999999999998531 234566666553 3567789999888773
No 130
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.39 E-value=0.0013 Score=57.68 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=54.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.+.|+|+++.+|.-. ....+.||.+.|..+... .+....|+... ...++.|||.++|+|.=..+.. .+
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~-------L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr-~A 76 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGES-------LCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPR-MA 76 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEE-------ccCceEccccC-CCCccccceeEEcccchhcCCh-hH
Confidence 5799999999999851 245788999888764211 22344565533 3578999999999886322322 26
Q ss_pred EEEEEEEECC
Q 040877 84 FIAFDLYSEG 93 (281)
Q Consensus 84 ~L~~eV~d~~ 93 (281)
.|.|.||+..
T Consensus 77 rLciti~~~~ 86 (173)
T cd08693 77 RLCFAIYEVS 86 (173)
T ss_pred eEEEEEEEec
Confidence 8899999754
No 131
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.31 E-value=0.0021 Score=55.69 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=59.1
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.++|+|++|+++.-. ...|-||.+.|..+... ++....|+-.. ..++.|||.++|+|.=..+.. .+
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~-------L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr-~A 74 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEP-------LCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPR-SA 74 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEE-------ccCeeEecccC--CCCCccceeEEcccchhcCCh-hh
Confidence 5799999999988753 23689999988765211 11233444322 368999999999886322322 36
Q ss_pred EEEEEEEECCccCC----CeeeEEEEEech
Q 040877 84 FIAFDLYSEGVIYG----YRSIGKVHVPLK 109 (281)
Q Consensus 84 ~L~~eV~d~~~~~g----Dk~IG~v~VpL~ 109 (281)
.|.|.|++...-.+ ...||.+.++|=
T Consensus 75 rL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 75 RLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred eEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 89999998552111 134666666553
No 132
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.31 E-value=0.0029 Score=53.74 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=62.7
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
..++|+|....++... .....+.||.+.|..+... .+....|+... ...++.|||.++|++.-..+.. .+
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~-------l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~-~a 77 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEP-------LCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPR-EA 77 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEE-------ccCceeccCCc-CCCCCcccceeEccchhhcCCh-hh
Confidence 4678888888887641 1245789999988765311 12344554432 3478999999999976322322 26
Q ss_pred EEEEEEEECCccC--CCeeeEEEEEechh
Q 040877 84 FIAFDLYSEGVIY--GYRSIGKVHVPLKD 110 (281)
Q Consensus 84 ~L~~eV~d~~~~~--gDk~IG~v~VpL~d 110 (281)
.|.|.|++.+... .+..||.+.++|=+
T Consensus 78 rL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 78 RLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred eEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 8899999865322 34678888877744
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.96 E-value=0.021 Score=49.70 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=88.3
Q ss_pred eEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC-
Q 040877 4 STLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC- 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~- 80 (281)
+.|.|+|+.+|-.-+.-. -+..+.-.++.+.=.. ||++|+.+. ..-+|.++|.|.|++.......
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-----------QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~ 76 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-----------QRFRSKPVP-CACEPDFNEEFLFELPRDSFGAG 76 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-----------ceEecCCcc-cccCCCCCCcEEEEecccccccc
Confidence 578999998875433211 1445555555554321 799999987 5899999999999998432100
Q ss_pred --------CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCC--C-cceEEEEEEEEee
Q 040877 81 --------NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHG--K-PNGVLSFCYKLKG 145 (281)
Q Consensus 81 --------~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~G--K-~~G~L~Lsl~f~p 145 (281)
-..-|++.|...+..+..+++|+-.+.+..++....+ ......+|..... | +.|+|+|.+.+.|
T Consensus 77 ~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~-~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 77 STATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG-STSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred cchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCC-ccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 1125677777666655668999999999999886533 1245566664432 3 8899999999988
No 134
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.86 E-value=0.0042 Score=54.01 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=69.6
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecC---CCCCCCeeceEEEEEeccCccCC
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDR---EGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~---~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
..+.|+|.++.++...-.....|-||.+.|..+... .+....|+... .-...+.|||.++|++.-..+..
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~-------L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPr 80 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRL-------LCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPR 80 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEE-------CcCceeccccccccCccccccccceEECccchhcCCh
Confidence 468999999999986543345789999988765321 12333454321 11236779999999986322322
Q ss_pred CceEEEEEEEECCccC---------CCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIY---------GYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKL 143 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~---------gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f 143 (281)
.+.|.|.|++..... .+..||.+.++ |.+.+|+ .+|...|.+.-
T Consensus 81 -earL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~------------------LFd~~~~L~~G~~~L~lW~ 134 (171)
T cd04012 81 -ESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLP------------------LFDFRGVLRQGSLLLGLWP 134 (171)
T ss_pred -hHEEEEEEEEEecCCccccccccccceEEEEEeEe------------------eEcchhhhccCCEEEEecc
Confidence 368999999755322 12345555544 4444444 56777776653
No 135
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.86 E-value=0.015 Score=51.41 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+.++|+|++++.+ +.+.......||.+.|..+.. .+...+|.-.. -+.++.|||-++|+|.=..+.. .+
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~--------~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~-~a 78 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQ--------VLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPK-GA 78 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCe--------ecccceeeccC-CCCCccccccEECccccccCCh-hh
Confidence 5689999998743 333334467888887775421 12233455433 4678999999999987332322 26
Q ss_pred EEEEEEEECCccCC-CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCC-cceEEEEEEEEee
Q 040877 84 FIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYKLKG 145 (281)
Q Consensus 84 ~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~f~p 145 (281)
.|.|.|++...-.. .+.+|.. +.+.-.+ ...-..++...|.+.+|. .+|...|.+.-.+
T Consensus 79 rLc~ti~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 79 LLNLQIYCGKAPALSSKKSAES--PSSESKG-KHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred EEEEEEEEEecCcccccccccc--ccccccc-ccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 89999998532111 1222321 1111100 011234667777777666 7788888877655
No 136
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.0011 Score=64.54 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=81.6
Q ss_pred eEEEEEEEeecCCCCCCC-CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNL-FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~-~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
+.|+|-||.|++|..+-- ..-.+|||+|.+..... |+.+.||+..++ +..|.+-..+.|+-... .
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~--------c~ak~ktk~A~k-T~~plyqq~l~f~~sp~-----~ 334 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGF--------CIAKKKTKSARK-TLDPLYQQQLSFDQSPP-----G 334 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCc--------eecccccccccc-cCchhhhhhhhhccCCC-----c
Confidence 789999999999975422 23579999999987643 668999999874 66666666788876643 2
Q ss_pred eEEEEEEEE-CCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcC
Q 040877 83 LFIAFDLYS-EGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTG 129 (281)
Q Consensus 83 ~~L~~eV~d-~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~ 129 (281)
.+|.+.||. +...-.+.|+|.+.|-|.||.-.. .....||.+.-.
T Consensus 335 k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgs 380 (405)
T KOG2060|consen 335 KYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGS 380 (405)
T ss_pred cEEEEEEeccccccchHHHhhHHHHHhhhhcccc--ccceeeeeccCC
Confidence 489999984 445556789999999999987643 245678887643
No 137
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.47 E-value=0.00062 Score=72.68 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=83.4
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccC-----ccCC
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAF-----VDNC 80 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~-----~~~~ 80 (281)
|++.|-.|+.|-..+..+..|||+.|...+ +.+.|-+.. ++.||+||+++.|+-.+. ....
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-------------qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCG-------------QSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhccc-------------ccceeEeec-CcCCCCccceeeccceeecCccchhhc
Confidence 455667889998888888899999999876 577888875 799999999999974321 0111
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEE
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCY 141 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl 141 (281)
+--.+.|||++.++.+.|+++|.......-..+- + .-.|+++.+ ++...|.++++.
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~--p--~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQC--P--ALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEecC--C--ccceEEeec-ccccccchhHHH
Confidence 2347889999999888899999876655444431 1 245666655 445666666554
No 138
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.24 E-value=0.0091 Score=60.62 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=67.6
Q ss_pred EEeecCCCCCCCCCCCCeEEEEEEec-CccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEE
Q 040877 10 VNSCSDLKAFNLFNRLSVYSVVSIIN-GELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFD 88 (281)
Q Consensus 10 ViSAkdLk~~~~~gk~DPYVvV~i~g-~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~e 88 (281)
.+.|++|-++++|++.|||..+.=.. ++.. ..-.+|.+.+ +++||.|-+ |.+.+...-.......+.++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~--------~~~~~tEv~~-n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~ 211 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGST--------QMLYRTEVVK-NTLNPQWAP-FSISLQSLCSKDGNRPIQIE 211 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCce--------eeccccceec-cCCCCcccc-cccchhhhcccCCCCceEEE
Confidence 34578888889999999999887543 3211 2567898876 599999976 33333322111123578899
Q ss_pred EEECCccCCCeeeEEEEEechhhhc
Q 040877 89 LYSEGVIYGYRSIGKVHVPLKDLID 113 (281)
Q Consensus 89 V~d~~~~~gDk~IG~v~VpL~dL~~ 113 (281)
++|.+..+++++||++...+.++..
T Consensus 212 ~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 212 CYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EeccCCCCCcCceeEecccHHHhcc
Confidence 9999977667999999999999974
No 139
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.22 E-value=0.034 Score=48.11 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeE
Q 040877 23 NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIG 102 (281)
Q Consensus 23 gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG 102 (281)
...|.||.+.|..+... .+....|+.. .-+....|||-+.|+|.=..+..+ +.|.|.||+...-+....||
T Consensus 28 ~~~~l~V~~~l~~~~~~-------L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~-a~L~iti~~~~~~~~~~~vg 98 (159)
T cd08397 28 PNSDLFVTCQVFDDGKP-------LTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRN-SQLAITIWDVSGTGKAVPFG 98 (159)
T ss_pred CCCCEEEEEEEEECCEe-------ccCcEEcccc-CCCCCcccceeEEcccchhcCChh-heEEEEEEEecCCCCceEEE
Confidence 45799999998865311 1123345443 245678899999999873323333 68999999876433456788
Q ss_pred EEEEech
Q 040877 103 KVHVPLK 109 (281)
Q Consensus 103 ~v~VpL~ 109 (281)
.+.++|=
T Consensus 99 ~~~~~lF 105 (159)
T cd08397 99 GTTLSLF 105 (159)
T ss_pred EEEEeeE
Confidence 8777763
No 140
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.18 E-value=0.087 Score=44.12 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred CeEEEEEEecCccchhhhhcccc-ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCC----ee
Q 040877 26 SVYSVVSIINGELKKKEQRQTCL-QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGY----RS 100 (281)
Q Consensus 26 DPYVvV~i~g~~~~~~~~~~~~~-~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gD----k~ 100 (281)
+.||.+.|..+... .+ ..+.|+...-+..++.|||.+.|+|.=..+..+ +.|.|.|++.+...++ ..
T Consensus 3 ~~~V~~~ly~g~~~-------L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~-a~L~~~l~~~~~~~~~~~~~~~ 74 (142)
T PF00792_consen 3 KLYVECQLYHGGEP-------LCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPRE-ARLCFTLYGVDSKKKSKKKKVP 74 (142)
T ss_dssp EEEEEEEEEETTEE-------SS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TT-EEEEEEEEEEECSTTT--EEEE
T ss_pred eEEEEEEEEECCEE-------eecCeeeccccccccccceEeeEEEeecChHHCChh-HeEEEEEEEecCCCccccceeE
Confidence 46788887754321 11 123666544223699999999999863223333 7899999986643344 68
Q ss_pred eEEEEEechhh
Q 040877 101 IGKVHVPLKDL 111 (281)
Q Consensus 101 IG~v~VpL~dL 111 (281)
||++.++|=+.
T Consensus 75 lgw~n~~lFd~ 85 (142)
T PF00792_consen 75 LGWVNLPLFDY 85 (142)
T ss_dssp EEEEEEESB-T
T ss_pred EEEEEEEeECC
Confidence 89888887543
No 141
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.12 E-value=0.37 Score=42.01 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=52.9
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccch-hhh------hc-cccceEEeeecCCCCCCCeeceEEEEEecc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKK-KEQ------RQ-TCLQRQKTPTDREGGGNPEWNHMMKFDIKA 75 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~-~~~------~~-~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~ 75 (281)
..|-|++.+++==+.. .....+..|+|.+..++... ... .. .......|.|.- ...+|.|||+|.+.|+.
T Consensus 7 N~LYv~~~s~~f~k~~-k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~y-h~k~P~f~deiKi~LP~ 84 (184)
T PF14429_consen 7 NDLYVYPKSGNFSKSK-KSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYY-HNKNPQFNDEIKIQLPP 84 (184)
T ss_dssp EEEEEEEEEEE-SSSS-SSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----T-T-SS-EEEEEEEEEE-C
T ss_pred eeEEEEeCEEEECCCC-CCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEe-cCCCCCccEEEEEEcCc
Confidence 4577888887421211 12345788888887553220 000 01 223455666654 57899999999999996
Q ss_pred CccCCCceEEEEEEEECCccC-C--CeeeEEEEEechh
Q 040877 76 FVDNCNHLFIAFDLYSEGVIY-G--YRSIGKVHVPLKD 110 (281)
Q Consensus 76 ~~~~~~~~~L~~eV~d~~~~~-g--Dk~IG~v~VpL~d 110 (281)
.... ..-|.|++++-..-. + ++.+|.+.+||-+
T Consensus 85 ~l~~--~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 85 DLFP--KHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp CCCT--TEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred hhcc--cEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5432 357888888644211 2 2689999999988
No 142
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=95.86 E-value=0.065 Score=43.69 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=51.5
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCcc---CCCceEEEEEEEECCccCCCeeeEEEEEechhhhcccCCceEEEEEE
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVD---NCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEFNGAVRFVRYQ 125 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~---~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~~g~~~~vsy~ 125 (281)
..+.|.+.+ |.||.+|-+..|.|....+ .-....|.||+..... ..-+.||.++|+|.++++... .....+..
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~-~~i~~~~~ 86 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG-ERIHGSAT 86 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S---EEEEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-ceEEEEEE
Confidence 467899875 8999999999988874321 1112378899886541 235789999999999997643 23455667
Q ss_pred EEcCCCCcceEEEEEEEEe
Q 040877 126 IRTGHGKPNGVLSFCYKLK 144 (281)
Q Consensus 126 L~~~~GK~~G~L~Lsl~f~ 144 (281)
+...+|..-|.|++.+++.
T Consensus 87 l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 87 LVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp E-BSSS-TSEEEEEEEEEE
T ss_pred EeccCCCeEEEEEEEEEec
Confidence 7777888999999999875
No 143
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.40 E-value=0.15 Score=49.39 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=88.8
Q ss_pred EEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccC---CCc
Q 040877 6 LELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDN---CNH 82 (281)
Q Consensus 6 LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~---~~~ 82 (281)
+-|.|++|++.... .+..-.+..++++. ...|-.. .++..|.||..+.+.++-..+. -.+
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~-------------~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~ 64 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNGE-------------SLETDPV-PHTESPQFNTELAWECDRKALKQHRLQR 64 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCCc-------------eeeecCC-CCCCCceeecceeeeccHHHHHHhhccC
Confidence 56889999988765 35688888999873 5667654 4688999999999999732221 135
Q ss_pred eEEEEEEEECC-ccCCCeeeEEEEEechhh---hcccCCceEEEEEEEEcCCCCc---ceEEEEEEEEee
Q 040877 83 LFIAFDLYSEG-VIYGYRSIGKVHVPLKDL---IDEFNGAVRFVRYQIRTGHGKP---NGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~-~~~gDk~IG~v~VpL~dL---~~g~~g~~~~vsy~L~~~~GK~---~G~L~Lsl~f~p 145 (281)
.-|++++|.-+ .-...+.||.+-++|..+ ..+. ......||.|...+.+. +=+|.+++.+..
T Consensus 65 tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~-~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 65 TPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKN-QKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred CceEEEEEEecCCCCcceeccEEEEEccccccccccc-cccCCCeeEccccccccccCCccEEEEEEEec
Confidence 68999999876 334578899999999998 3331 13567899998764343 348888877766
No 144
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.93 E-value=0.057 Score=52.13 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred ceEEEEEEEeecCCCCCCC--CCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCC
Q 040877 3 WSTLELKVNSCSDLKAFNL--FNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~--~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.|.|-|++..+++|+.... .-..+-||+++++.. .+.||.| +.++.-=.|.|+|+.+|-..
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drq------------h~aRt~v-rs~~~~f~w~e~F~~Dvv~~---- 112 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQ------------HPARTRV-RSSGPGFAWAEDFKHDVVNI---- 112 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeeccc------------Ccccccc-ccCCCCccchhhceeecccc----
Confidence 4788999999999986533 345699999998753 6888988 55788889999999998742
Q ss_pred CceEEEEEEEECCccCCCee
Q 040877 81 NHLFIAFDLYSEGVIYGYRS 100 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~ 100 (281)
..|.+-|+..+.-.+.|+
T Consensus 113 --~vl~~lvySW~pq~RHKL 130 (442)
T KOG1452|consen 113 --EVLHYLVYSWPPQRRHKL 130 (442)
T ss_pred --eeeeEEEeecCchhhccc
Confidence 378888998775445554
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.14 E-value=0.37 Score=38.27 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=48.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.+.+++...+++.-.......|-||.+.|..+... .+....|+.. .....+.|||-++|++.=..+.. .+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~-------l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr-~a~ 82 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKL-------LCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPR-EAR 82 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEE-------ccCcEEeccc-CCCCCcccceeEEccCchhcCCh-hhE
Confidence 35667777776654322222489999988765311 1123345432 34556999999999876322222 368
Q ss_pred EEEEEEECC
Q 040877 85 IAFDLYSEG 93 (281)
Q Consensus 85 L~~eV~d~~ 93 (281)
|.|.+++..
T Consensus 83 L~~~i~~~~ 91 (100)
T smart00142 83 LCITIYEVK 91 (100)
T ss_pred EEEEEEEee
Confidence 999998743
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=92.63 E-value=0.33 Score=52.16 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEE
Q 040877 25 LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKV 104 (281)
Q Consensus 25 ~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v 104 (281)
++.|+.+.+... .-.+|....+.-.+|.|++.|.......+ ..+.|.+.+.+.++..+.+|.+
T Consensus 138 ~e~Ylt~~l~~~------------~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~~~~G~s~~w~~v 200 (887)
T KOG1329|consen 138 LENYLTVVLHKA------------RYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGARVPGWSKRWGRV 200 (887)
T ss_pred ccchheeeechh------------hhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCCccccceeEEEEe
Confidence 488999888653 34567766654589999999988777543 3889999888865448999999
Q ss_pred EEechhhhcccCCceEEEEEEEEcCCCCcc--e-EEEEEEEEeee
Q 040877 105 HVPLKDLIDEFNGAVRFVRYQIRTGHGKPN--G-VLSFCYKLKGM 146 (281)
Q Consensus 105 ~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~--G-~L~Lsl~f~p~ 146 (281)
++++..++.+. ....++.+.+.++++. | .+.+.+.|.++
T Consensus 201 ~~s~~~~~~~~---~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 201 KISFLQYCSGH---RIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccchhhhhccc---cccceeeeeccCCccccCCcccceEEeeEee
Confidence 99999999863 3356778877777743 2 55565666664
No 147
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.35 E-value=0.44 Score=41.51 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=39.2
Q ss_pred EEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-----CCCeeeEEEEEechh
Q 040877 51 QKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-----YGYRSIGKVHVPLKD 110 (281)
Q Consensus 51 ~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-----~gDk~IG~v~VpL~d 110 (281)
.-|.+...+ .+|.|||+|.+.|+..... ..-|.|++++-..- ...+.+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~--~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTP--QHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCC--CeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 334444444 8999999999999754322 35788888864421 125679999999976
No 148
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.19 E-value=1.5 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=54.2
Q ss_pred CCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEE
Q 040877 25 LSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKV 104 (281)
Q Consensus 25 ~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v 104 (281)
.+..+++.+++. ...+|.-.. -.+-.|+++|.|++.-. -.|.|.|+-.| . ..+-|..
T Consensus 9 ~eV~avLklDn~------------~VgqT~Wk~--~s~q~WDQ~Fti~LdRs------RELEI~VywrD-~--RslCav~ 65 (98)
T cd08687 9 SEVSAVLKLDNT------------VVGQTQWKP--KSNQAWDQSFTLELERS------RELEIAVYWRD-W--RSLCAVK 65 (98)
T ss_pred cceEEEEEEcCe------------EEeeccccc--cccccccceeEEEeecc------cEEEEEEEEec-c--hhhhhhe
Confidence 688899999764 345565532 46899999999999742 26788887554 2 3455677
Q ss_pred EEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEEE
Q 040877 105 HVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYKL 143 (281)
Q Consensus 105 ~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~f 143 (281)
.+-|.|...+. .. .--++|.|-..++|
T Consensus 66 ~lrLEd~~~~~-------~~-----~lepqg~l~~ev~f 92 (98)
T cd08687 66 FLKLEDERHEV-------QL-----DMEPQLCLVAELTF 92 (98)
T ss_pred eeEhhhhcccc-------ee-----ccccccEEEEEEEe
Confidence 77777743321 11 22466666666665
No 149
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.99 E-value=0.51 Score=42.29 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-CC-CeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-YG-YRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-~g-Dk~IG~v~VpL~d 110 (281)
...+|-|.. ...+|.|||+|.+.|+..... ..-|+|++++-..- .+ .+.+|.+-+||-+
T Consensus 53 se~~S~V~y-H~~~P~W~EtiKi~lP~~~~~--~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLY-HNNSPRWNETIKLPIPIDKFR--GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEE-cCCCCCCceeEEEecChhhCC--CeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 466888765 478999999999999854332 35788877753211 12 2679999999854
No 150
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.01 E-value=0.69 Score=41.72 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=40.5
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc-CC---CeeeEEEEEech
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI-YG---YRSIGKVHVPLK 109 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~-~g---Dk~IG~v~VpL~ 109 (281)
...+|-|.. ...+|.|||+|.+.|+..... ..-|+|++++-..- .+ .+.+|.+-+||-
T Consensus 53 se~~S~V~Y-h~~~P~W~EtIKl~lP~~~~~--~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYY-QVDKPKWFETFKVAIPIEDFK--SSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEe-ecCCCCCceeEEEecChhhCC--CeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 567888744 367999999999999854332 35788888753211 12 367999889885
No 151
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=88.03 E-value=2.2 Score=34.55 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.0
Q ss_pred eEEEEEEEECCc---cCCCeeeEEEEEechhhhccc----------CC-ceEEEEEEEEcCCCCcceEEEEEEEEee
Q 040877 83 LFIAFDLYSEGV---IYGYRSIGKVHVPLKDLIDEF----------NG-AVRFVRYQIRTGHGKPNGVLSFCYKLKG 145 (281)
Q Consensus 83 ~~L~~eV~d~~~---~~gDk~IG~v~VpL~dL~~g~----------~g-~~~~vsy~L~~~~GK~~G~L~Lsl~f~p 145 (281)
..|.+.++..-. .....+||++.|+|.+++..- .. ......|.|++..|...|+|.+.+|+.-
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc 105 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC 105 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence 356665554321 234678999999999987422 00 1234578999999999999999999864
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=87.67 E-value=2.5 Score=36.69 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCCeEEEEEEecCccchhhhhccccceEEeeecC-CCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeee
Q 040877 23 NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDR-EGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSI 101 (281)
Q Consensus 23 gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~-~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~I 101 (281)
.+..-|++|.+++. ...+|+... .....=.+||.|.+.|.... ..|.++||.... .++..|
T Consensus 35 ~~~~~~ikl~~N~k------------~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~~~-~~~~~l 96 (168)
T PF15625_consen 35 QKTRYYIKLFFNDK------------EVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEKSG-LSDRLL 96 (168)
T ss_pred hheeEEEEEEECCE------------EEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEccC-ccceEE
Confidence 45788999999763 345555543 24567788999999997643 279999998886 689999
Q ss_pred EEEEEechhhhcc
Q 040877 102 GKVHVPLKDLIDE 114 (281)
Q Consensus 102 G~v~VpL~dL~~g 114 (281)
+++.||+-.....
T Consensus 97 a~v~vpvP~~~~~ 109 (168)
T PF15625_consen 97 AEVFVPVPGSTVH 109 (168)
T ss_pred EEEEeeCCCCccc
Confidence 9999999776654
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=86.79 E-value=2.1 Score=37.96 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=40.6
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCccC---C---CeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIY---G---YRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~---g---Dk~IG~v~VpL~d 110 (281)
....|.|.- .+.+|.|+|+|.+.|+..... ..-|.|++++-..-. + .+.||-+-+||-+
T Consensus 54 ~~~~S~V~y-Hnk~P~f~DEiKi~LP~~l~~--~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTY-HNKSPDFYDEIKIKLPADLTD--NHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEE-eCCCCcccceEEEEcCCCCCC--CeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 466777765 578999999999999964332 246778877632111 1 3568988888854
No 154
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=84.47 E-value=4.1 Score=35.24 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCC-CCCCCeeceEEEEEeccCccCCCc
Q 040877 4 STLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDRE-GGGNPEWNHMMKFDIKAFVDNCNH 82 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~-gg~NPvWNEtf~F~V~~~~~~~~~ 82 (281)
..|.|.|-+.. |++...+ .|||+.|++.... +.-....+.|.+... .+.-=.||.+.++...-..+.. .
T Consensus 13 t~l~v~Iekig-lkda~~~--~~P~~tVSV~D~~------G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~-G 82 (147)
T PF14186_consen 13 TYLSVFIEKIG-LKDASQY--IDPYFTVSVKDGN------GKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPK-G 82 (147)
T ss_dssp -EEEEEEEEEE--TTGGG---EEEEEEEEEE-TT------S-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-T-T
T ss_pred ceEEEEEEEEE-ECChHHc--cCCeEEEEEECCC------CCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCC-c
Confidence 35777766665 8775432 5999999997431 111235667887632 3445567766666544222222 4
Q ss_pred eEEEEEEEECCccCC-CeeeEEEEEechhhhcc
Q 040877 83 LFIAFDLYSEGVIYG-YRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 83 ~~L~~eV~d~~~~~g-Dk~IG~v~VpL~dL~~g 114 (281)
+.|.||++++..-.+ -...+++.+.+.++..|
T Consensus 83 aai~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 83 AAIFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp -EEEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred eEEEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 789999999764222 23478999999988876
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=82.90 E-value=4.3 Score=36.22 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred ceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECCcc---------CCCeeeEEEEEechh
Q 040877 49 QRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVI---------YGYRSIGKVHVPLKD 110 (281)
Q Consensus 49 ~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~---------~gDk~IG~v~VpL~d 110 (281)
....|.|.-. +.+|.|+|+|.+.|+..... .--|.|++++-..- ...+.+|-+-+||-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~--~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHE--KHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCC--CeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 4567777654 69999999999999854332 24677887764311 113569999999865
No 156
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=76.70 E-value=11 Score=41.01 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=41.5
Q ss_pred eEEEEEEEeecCCCCCCCCCCCC--eEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCC
Q 040877 4 STLELKVNSCSDLKAFNLFNRLS--VYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCN 81 (281)
Q Consensus 4 g~LeVtViSAkdLk~~~~~gk~D--PYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~ 81 (281)
+.++|+++++..+ ++..+.| +||.+.|..+.. ..++...|.- .++..+|.||+.+.|+|.--.+. +
T Consensus 343 ~~frI~l~~is~~---n~~~t~~~kV~V~~~lyhG~e-------~Lc~~~sTs~-v~~~~~~~Wn~~leFDI~i~DLP-r 410 (1076)
T KOG0904|consen 343 RPFRIKLVGISKV---NLPETVDLKVFVEAGLYHGTE-------VLCKTRSTSE-VPGCSFPLWNEWLEFDIYIKDLP-R 410 (1076)
T ss_pred CceEEEEeecccc---CCCcccceEEEEEEEEEECCe-------ehhcccccCC-CCCccchhccceeEeeeecCCCC-h
Confidence 5678888877654 3334444 444444443311 1122223322 24688999999999998622221 1
Q ss_pred ceEEEEEEEE
Q 040877 82 HLFIAFDLYS 91 (281)
Q Consensus 82 ~~~L~~eV~d 91 (281)
-+.|.|.|++
T Consensus 411 ~ArLc~~i~~ 420 (1076)
T KOG0904|consen 411 MARLCLAIYA 420 (1076)
T ss_pred hhhheeeeeE
Confidence 2456666665
No 157
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=72.06 E-value=64 Score=27.79 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred EEEEEeecCCCCCCCCCCCCeEEEEEEecC-ccchhhhhccccc-eEEeeecCC----CCCCCeeceEEEEEeccCccCC
Q 040877 7 ELKVNSCSDLKAFNLFNRLSVYSVVSIING-ELKKKEQRQTCLQ-RQKTPTDRE----GGGNPEWNHMMKFDIKAFVDNC 80 (281)
Q Consensus 7 eVtViSAkdLk~~~~~gk~DPYVvV~i~g~-~~~~~~~~~~~~~-k~KTkV~~~----gg~NPvWNEtf~F~V~~~~~~~ 80 (281)
.=.|.+|++.. ..+-||+-.+.-. ..+..+. .. ...|.+++. ++..=.||.-|.+.+.......
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g----~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISG----LSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCC----CcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 33677887443 3477888777632 2211000 02 345555532 2456789999888887433222
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEec
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVPL 108 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~VpL 108 (281)
--.|.|+|+..|.++++.+.|-..+.|
T Consensus 75 -wP~L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 75 -WPQLVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred -CceEEEEEEEEcccCCeEEeEEeEEEe
Confidence 237899999999888888887554444
No 158
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.52 E-value=28 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.8
Q ss_pred CCCCCCeeceEEEEEec
Q 040877 58 EGGGNPEWNHMMKFDIK 74 (281)
Q Consensus 58 ~gg~NPvWNEtf~F~V~ 74 (281)
++|-+|-+...++|+|+
T Consensus 439 r~~~DPdf~yr~~l~id 455 (1102)
T KOG1924|consen 439 RTGMDPDFKYRFRLDID 455 (1102)
T ss_pred cCCCCCCcchhhcccCc
Confidence 46789999988888876
No 159
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=65.90 E-value=54 Score=32.61 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCC-eeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeE
Q 040877 24 RLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNP-EWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIG 102 (281)
Q Consensus 24 k~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NP-vWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG 102 (281)
.-.-|+.++.+. ...+|..+..+-.+- .-.+...+.+..- + .+|++.|+... +.+..-||
T Consensus 73 ~khiyIef~~Gr-------------~d~TT~~IpTsKK~RI~IqqRV~IkIRQc----D-nTLkI~lfKKk-Lvkk~hIg 133 (508)
T PTZ00447 73 YKHIYIIFSTDK-------------YDFTTDEIPTNKKNRIHIDQRVDIKIRQC----D-ETLRVDLFTTK-LTKKVHIG 133 (508)
T ss_pred ceeEEEEEEcCc-------------eEEEccccccCcCceEEEeeeeeeeeeec----C-ceEEEEEEecc-ccceeEEE
Confidence 346788887754 344553333222222 3334555555532 2 38999999877 66889999
Q ss_pred EEEEechh-hhcccCCceEEEEEEEEcCCCCcceEEEEEEE
Q 040877 103 KVHVPLKD-LIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYK 142 (281)
Q Consensus 103 ~v~VpL~d-L~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~ 142 (281)
.+.+.+++ ++++. -.+..||-+ ..+|+..+.|.||+.
T Consensus 134 dI~InIn~dIIdk~--FPKnkWy~c-~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 134 QIKIDINASVISKS--FPKNEWFVC-FKDGQEICKVQMSFY 171 (508)
T ss_pred EEEecccHHHHhcc--CCccceEEE-ecCCceeeeEEEEeh
Confidence 99999975 44432 235678877 559999999999875
No 160
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=63.96 E-value=0.86 Score=47.82 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=48.7
Q ss_pred EEEEeecCCCC----CCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCce
Q 040877 8 LKVNSCSDLKA----FNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHL 83 (281)
Q Consensus 8 VtViSAkdLk~----~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~ 83 (281)
+++|+|.++.+ +...-++++++.++++. +..+|+.-+ .+.+|+|||. .|.+.+...
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~-------------~~frt~~~~-~~e~piyNe~-~~E~~~Fqs----- 343 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE-------------QTFRTEISD-DTEKPIYNED-EREDSDFQS----- 343 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecch-------------hhhhhhhhc-cccccccccc-ccccccchh-----
Confidence 46778887743 22335689999999864 578888865 5899999998 666654321
Q ss_pred EEEEEEEECCccCCCeeeEEEEEechh
Q 040877 84 FIAFDLYSEGVIYGYRSIGKVHVPLKD 110 (281)
Q Consensus 84 ~L~~eV~d~~~~~gDk~IG~v~VpL~d 110 (281)
+...+++++|.++..|.+
T Consensus 344 ---------n~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 344 ---------NRYLGNKIVGYCELDLND 361 (975)
T ss_pred ---------hHHHhhhccccccccccc
Confidence 112355566666665555
No 161
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=63.10 E-value=17 Score=37.52 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCeEEEEEEecCccc-hhh-----hhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEE
Q 040877 16 LKAFNLFNRLSVYSVVSIINGELK-KKE-----QRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDL 89 (281)
Q Consensus 16 Lk~~~~~gk~DPYVvV~i~g~~~~-~~~-----~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV 89 (281)
|.+.+.+.+.|+-|.+........ ... +-.+.....+|.+++ +.+||.|-++|.+...-.. -..|+|++
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~-~~~~p~f~~~~~l~y~fE~----vQ~l~~~~ 76 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIR-NVLNPFFTKKFLLQYRFEK----VQLLRFEV 76 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeee-ccCCccceeeechhheeee----eeeEEEEE
Confidence 344456677787777655321100 000 000011344788877 5899999999887665221 13788999
Q ss_pred EECCc----cCCCeeeEEEEEechhhhccc
Q 040877 90 YSEGV----IYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 90 ~d~~~----~~gDk~IG~v~VpL~dL~~g~ 115 (281)
++-+. +...+++|++..-|+.+....
T Consensus 77 ~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 77 YDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred eecCCccCCcchhcccceeeeehhhhhhhh
Confidence 88653 234688999999999888643
No 162
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=61.48 E-value=27 Score=37.99 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=5.1
Q ss_pred EEEechhhhc
Q 040877 104 VHVPLKDLID 113 (281)
Q Consensus 104 v~VpL~dL~~ 113 (281)
..|++..|++
T Consensus 452 l~id~~~liD 461 (1102)
T KOG1924|consen 452 LDIDLTELID 461 (1102)
T ss_pred ccCcHHHHHH
Confidence 3455555554
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=61.29 E-value=3.8 Score=44.49 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=46.2
Q ss_pred ceEEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEecc
Q 040877 3 WSTLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKA 75 (281)
Q Consensus 3 ~g~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~ 75 (281)
+|.+.+.+.+|..|+.. ..-||...++.-+... .+.+|+++++ +..|-||++|++.+.+
T Consensus 758 ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~--------s~~st~~iad-T~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFV--------SKASTRVIAD-TAEPQWNPEKHVPVIE 816 (1112)
T ss_pred ccceeeeeccccccccc-----cceeeehhhhhhcccc--------ccccceeeec-ccCCCCChhcccchhh
Confidence 47899999999999863 4778887776432221 5789999885 8999999999999874
No 164
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=61.25 E-value=18 Score=38.40 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=59.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceE
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLF 84 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~ 84 (281)
.|+|.|++-++||.+.. ..=+||..++.|. |.+|.- ....-|.|...=.|...... -.
T Consensus 342 smevvvmevqglksvap--nrivyctmevege-------------klqtdq--aeaskp~wgtqgdfstthpl-----pv 399 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEGE-------------KLQTDQ--AEASKPKWGTQGDFSTTHPL-----PV 399 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEeccc-------------ccccch--hhhcCCCCCcCCCcccCCCC-----ce
Confidence 58999999999998753 2368999999883 566654 34689999998777766432 36
Q ss_pred EEEEEEECCcc---CCCeeeEEEEEe
Q 040877 85 IAFDLYSEGVI---YGYRSIGKVHVP 107 (281)
Q Consensus 85 L~~eV~d~~~~---~gDk~IG~v~Vp 107 (281)
+.|.++.+.+- ..|+.+|.+-+-
T Consensus 400 vkvklftestgvlaledkelgrvil~ 425 (1218)
T KOG3543|consen 400 VKVKLFTESTGVLALEDKELGRVILQ 425 (1218)
T ss_pred eEEEEEeecceeEEeechhhCeEEEe
Confidence 78888876531 358888887654
No 165
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=58.74 E-value=89 Score=26.88 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=61.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEec-----c----
Q 040877 5 TLELKVNSCSDLKAFNLFNRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIK-----A---- 75 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~~~gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~-----~---- 75 (281)
.|+|+-++|=+.- +..+.|.|..|.+.| +-++|+... --.==.+||+|+|+=. +
T Consensus 3 eL~i~aVTCPGv~---L~~~~~vyL~v~~lg-------------~~~~T~~~p-pvFPllfhek~~FeK~F~~~~dp~~l 65 (140)
T PF14909_consen 3 ELEIHAVTCPGVW---LCDKGDVYLSVCILG-------------QYKRTRCLP-PVFPLLFHEKFRFEKVFPNAVDPAQL 65 (140)
T ss_pred EEEEEEEecCCeE---eCCCCCEEEEEEEcc-------------cEeecccCC-CcCCeeEeeEEEeEEEecCCCCHHHH
Confidence 4777778875543 335789999999998 577887653 2333357999999732 1
Q ss_pred -CccCCCceEEEEEEEECCccCCCeeeEEEEEechhhhccc
Q 040877 76 -FVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDEF 115 (281)
Q Consensus 76 -~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g~ 115 (281)
..++ ...+.||+.....- .++.|+...-.++|++.-.
T Consensus 66 ~~~Le--~e~~~iELiQl~~~-~g~iLA~ye~n~rDfLfP~ 103 (140)
T PF14909_consen 66 ADLLE--DETVYIELIQLVPP-AGEILAYYEENTRDFLFPE 103 (140)
T ss_pred HHHhh--cCcEEEEEEEEeCC-CCcEEEEEeccccceEcCC
Confidence 1122 23788888764432 3788999999999888643
No 166
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=47.04 E-value=2e+02 Score=29.17 Aligned_cols=73 Identities=21% Similarity=0.288 Sum_probs=44.2
Q ss_pred eEEEEEEEECCc-----c-CCCeeeEEEEEechhhhcccCC--ceEEEEEEEEcCC---CC-cceEEEEEEEEee---eE
Q 040877 83 LFIAFDLYSEGV-----I-YGYRSIGKVHVPLKDLIDEFNG--AVRFVRYQIRTGH---GK-PNGVLSFCYKLKG---MT 147 (281)
Q Consensus 83 ~~L~~eV~d~~~-----~-~gDk~IG~v~VpL~dL~~g~~g--~~~~vsy~L~~~~---GK-~~G~L~Lsl~f~p---~~ 147 (281)
..|.|.||.-+. + .+.++||.++|+|. |...... .+...|..+-+.. ++ ...+|||.++..| .+
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRfV 173 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRFV 173 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCeeE
Confidence 579999997442 1 34689999999997 2221111 2344555554321 22 3569999999887 34
Q ss_pred Ee-ecCCCCC
Q 040877 148 IK-KGEIPSP 156 (281)
Q Consensus 148 ~~-~~~~~~p 156 (281)
++ .+++.+.
T Consensus 174 FQFdgepecS 183 (460)
T PF06219_consen 174 FQFDGEPECS 183 (460)
T ss_pred EEcCCccccC
Confidence 44 4555554
No 167
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=41.09 E-value=21 Score=19.40 Aligned_cols=6 Identities=33% Similarity=0.384 Sum_probs=2.5
Q ss_pred CCCCCC
Q 040877 221 PPLSPV 226 (281)
Q Consensus 221 p~~~p~ 226 (281)
|+++||
T Consensus 9 PQ~~Pp 14 (15)
T PF02162_consen 9 PQGYPP 14 (15)
T ss_pred CCCCCC
Confidence 344443
No 168
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=37.18 E-value=1.9e+02 Score=22.45 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=24.6
Q ss_pred EEEEechh-hhcccCCceEEEEEEEEcCCCC-cceEEEEEEE
Q 040877 103 KVHVPLKD-LIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYK 142 (281)
Q Consensus 103 ~v~VpL~d-L~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~ 142 (281)
++.++|.. |..| .-.+.|++...+|. ..|.+.|+++
T Consensus 60 ~~~~~l~~~l~~G----~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 60 TLTVPLPPPLPPG----TYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp EEEEEESS---SE----EEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred EEEEECCCCCCCc----eEEEEEEEEecCCCCcCCEEEEEEC
Confidence 66777776 4443 34677788888998 6799999874
No 169
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=36.14 E-value=48 Score=32.97 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred eeEEEEEechhhhcccCCceEEEEEEEEcCCCCc--ceEEEEEEEEee
Q 040877 100 SIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKP--NGVLSFCYKLKG 145 (281)
Q Consensus 100 ~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~--~G~L~Lsl~f~p 145 (281)
+||.+.|++..+++.. .....||++.+.+.+. .|.| |.+++..
T Consensus 1 ~~G~v~i~~~~~~~~~--~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRG--LDKETWLPIFDVDNKSVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCC--CCceeeeccccCCCCCcCcceE-EEEEeee
Confidence 4899999999966642 2456899999865553 3555 5666665
No 170
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=35.60 E-value=1.3e+02 Score=29.43 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=57.3
Q ss_pred EEEEEEEeecCCCCCC---CC---CCCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCee--ceEEEEEeccC
Q 040877 5 TLELKVNSCSDLKAFN---LF---NRLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEW--NHMMKFDIKAF 76 (281)
Q Consensus 5 ~LeVtViSAkdLk~~~---~~---gk~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvW--NEtf~F~V~~~ 76 (281)
.|.|+|..|++|...- .. +...-|...++.|+. ..|..- ....+|.+ ++...|.|...
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~-------------Vt~~~F-~~l~~~~f~~er~s~vRirSS 258 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND-------------VTTEPF-KSLSSPSFPPERASGVRIRSS 258 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE-------------eEeeec-cccCCCCcCeeeeeEEeeccc
Confidence 5889999999997541 11 235788888888863 222222 23455544 34444666532
Q ss_pred cc--C---CCceEEEEEEEECCccCCCeeeEEEEEechhhhcc
Q 040877 77 VD--N---CNHLFIAFDLYSEGVIYGYRSIGKVHVPLKDLIDE 114 (281)
Q Consensus 77 ~~--~---~~~~~L~~eV~d~~~~~gDk~IG~v~VpL~dL~~g 114 (281)
.. . +....|.|-+++ +|..||.+.|+|..|+..
T Consensus 259 ~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 259 LRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred HHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 11 0 112467788776 578899999999999864
No 171
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.66 E-value=17 Score=38.49 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=33.0
Q ss_pred CCCeEEEEEEecCccchhhhhccccceEEeeecCCCCCCCeeceEEEEEeccCccCCCceEEEEEEEECC
Q 040877 24 RLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGGGNPEWNHMMKFDIKAFVDNCNHLFIAFDLYSEG 93 (281)
Q Consensus 24 k~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg~NPvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~ 93 (281)
-.|+|+.|.+.-. +-..+.+ +....+|+|||+|.++|... + .+.|.|+...
T Consensus 27 al~~y~~v~vk~~------------~~~~~~~-~~~~~~~~~~~~F~~~v~~~----~--~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKVK------------QGAENMT-KVELRIPELRETFHVEVVAG----G--AKNIIVLLKS 77 (694)
T ss_pred hhhhhheecccee------------ecccccC-CCCCCCchhhhheeeeeecC----C--ceEEEEEecC
Confidence 3689998888542 1112222 34578999999999997642 2 4666666543
No 172
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=50 Score=35.30 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeeceEEEEEeccCccCCCceEEEEEEEECCccCCCeeeEEEEEec
Q 040877 63 PEWNHMMKFDIKAFVDNCNHLFIAFDLYSEGVIYGYRSIGKVHVPL 108 (281)
Q Consensus 63 PvWNEtf~F~V~~~~~~~~~~~L~~eV~d~~~~~gDk~IG~v~VpL 108 (281)
=.|||=++|.+.=..+.. .+.|.|.+|+.+.-..-.++|-.++.|
T Consensus 77 ~~wnewLtlpvky~dLt~-~a~l~itiW~~n~~~~~~~vg~~t~~l 121 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTR-NAQLAITIWDVNGPKKAVFVGGTTVSL 121 (843)
T ss_pred cchhhhhccccccccccc-cceEEEEEEecCCCceeeeccceEEEe
Confidence 349999998887433333 379999999977544456788776665
No 173
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.07 E-value=92 Score=30.67 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=4.5
Q ss_pred CCCCCCCccCC
Q 040877 203 SPPPNYQYEAT 213 (281)
Q Consensus 203 ~~~~~~~~p~~ 213 (281)
.+++|+.||+.
T Consensus 146 ~~~~p~p~p~~ 156 (365)
T KOG2391|consen 146 LPSPPPPYPQT 156 (365)
T ss_pred CCCCCCCCCcc
Confidence 33344444443
No 174
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=24.38 E-value=1.3e+02 Score=23.49 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=23.6
Q ss_pred CeeeEEEEEechhhhcccCCceEEEEEEEEcCCCCcceEEEEEEE
Q 040877 98 YRSIGKVHVPLKDLIDEFNGAVRFVRYQIRTGHGKPNGVLSFCYK 142 (281)
Q Consensus 98 Dk~IG~v~VpL~dL~~g~~g~~~~vsy~L~~~~GK~~G~L~Lsl~ 142 (281)
....|+.+|||++|.. + +++.+.++..|.|+|.++
T Consensus 21 ~~~~G~~~ipl~~i~g--------V--~~~~pg~~~~G~Lrf~~~ 55 (94)
T PF14472_consen 21 KRALGEKTIPLSAISG--------V--EWKPPGGLTNGYLRFVLR 55 (94)
T ss_pred hccCCCEEEEHHHcce--------E--EEEcCCceeEEEEEEEEC
Confidence 3559999999999854 1 222334456888888654
No 175
>smart00686 DM13 Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9.
Probab=23.82 E-value=2.8e+02 Score=22.59 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=44.8
Q ss_pred EEEEeecCCCCCCC--CC-CCCeEEEEEEecCccchhhhhccccceEEeeecCCCC---CCCee-ceEEEEEeccCccCC
Q 040877 8 LKVNSCSDLKAFNL--FN-RLSVYSVVSIINGELKKKEQRQTCLQRQKTPTDREGG---GNPEW-NHMMKFDIKAFVDNC 80 (281)
Q Consensus 8 VtViSAkdLk~~~~--~g-k~DPYVvV~i~g~~~~~~~~~~~~~~k~KTkV~~~gg---~NPvW-NEtf~F~V~~~~~~~ 80 (281)
|.|+.++-|.-.++ .| -.|.|--+-..+.... ..=+++-.+.| .+-.+ ||++.+.|+....-.
T Consensus 11 V~i~d~~Tl~I~~FsydG~~pD~yF~~g~~~~p~~----------~~G~~v~de~g~~~~l~~y~~e~ivl~LP~~~ti~ 80 (108)
T smart00686 11 VEIVDAKTLRIPNFSYDGSGPDAYFWVGAGSRPDN----------EGGKKVPDEYGYCNPLRRYHNEDIVLRLPESLTID 80 (108)
T ss_pred EEEEeCCEEEEcceeccCCCCcEEEEeccCCCCCC----------cCCeEcCCccCCcccccceeCCEEEEECCCCCeEe
Confidence 67777777764443 33 3577765554433221 10011111112 23333 899999998542111
Q ss_pred CceEEEEEEEECCccCCCeeeEEEEEe
Q 040877 81 NHLFIAFDLYSEGVIYGYRSIGKVHVP 107 (281)
Q Consensus 81 ~~~~L~~eV~d~~~~~gDk~IG~v~Vp 107 (281)
+ .=.|.|||... ....|.+.+|
T Consensus 81 d--i~w~SV~~~~~---~~nFG~V~ip 102 (108)
T smart00686 81 D--IKWFSVWCLKT---AHNFGHVLFP 102 (108)
T ss_pred c--CCEEEEEcccc---CCcceeEEcc
Confidence 1 22678888762 3457777776
No 176
>PRK10301 hypothetical protein; Provisional
Probab=23.47 E-value=4.2e+02 Score=21.80 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=25.1
Q ss_pred EEEEechh-hhcccCCceEEEEEEEEcCCCC-cceEEEEEEE
Q 040877 103 KVHVPLKD-LIDEFNGAVRFVRYQIRTGHGK-PNGVLSFCYK 142 (281)
Q Consensus 103 ~v~VpL~d-L~~g~~g~~~~vsy~L~~~~GK-~~G~L~Lsl~ 142 (281)
.+.++|.+ |..| .-.+.|++...||. ..|.+.|+++
T Consensus 87 ~~~v~l~~~L~~G----~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 87 QLIVPLADSLKPG----TYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred EEEEECCCCCCCc----cEEEEEEEEecCCCccCCeEEEEEC
Confidence 36778864 4443 24577788888997 6799999864
Done!