Query 040879
Match_columns 83
No_of_seqs 38 out of 40
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dg8_A Putative TETR-family tr 71.6 0.8 2.7E-05 29.2 0.0 12 72-83 181-192 (193)
2 4ghu_A TNF receptor-associated 54.2 2.8 9.7E-05 28.9 0.2 9 75-83 187-195 (198)
3 1us7_B HSP90 CO-chaperone CDC3 36.8 8.6 0.00029 28.6 0.4 11 71-81 172-182 (265)
4 2fy1_A RNA-binding motif prote 34.7 25 0.00087 21.3 2.3 17 67-83 98-114 (116)
5 1skh_A Major prion protein 2; 30.9 13 0.00044 19.4 0.4 19 1-20 1-19 (30)
6 3nyw_A Putative oxidoreductase 28.2 12 0.00042 25.4 0.0 7 77-83 244-250 (250)
7 2kuc_A Putative disulphide-iso 26.0 17 0.00058 21.5 0.3 11 73-83 120-130 (130)
8 2jju_A Signal regulatory prote 25.3 14 0.00048 22.3 -0.1 14 70-83 111-124 (127)
9 3jtz_A Integrase; four strande 23.9 18 0.00061 22.1 0.2 7 77-83 78-84 (88)
10 2gec_A Nucleocapsid protein; N 21.9 29 0.00099 23.7 0.9 13 68-80 118-130 (139)
11 1fjk_A Cardiac phospholamban; 21.7 48 0.0016 18.9 1.7 8 8-15 35-42 (52)
12 1kn7_A RCK4, voltage-gated pot 20.6 35 0.0012 21.0 1.0 9 74-83 60-68 (78)
No 1
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=71.65 E-value=0.8 Score=29.21 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=0.4
Q ss_pred ccCCCCCCCCCC
Q 040879 72 RVSPGGPDPKHH 83 (83)
Q Consensus 72 RlSPGGPDPqHH 83 (83)
...||+|||+||
T Consensus 181 ~~~~~~~~~~~~ 192 (193)
T 2dg8_A 181 DRPAPLEHHHHH 192 (193)
T ss_dssp C-----------
T ss_pred cCCCcccccccC
Confidence 347899999987
No 2
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=54.21 E-value=2.8 Score=28.87 Aligned_cols=9 Identities=56% Similarity=1.058 Sum_probs=2.5
Q ss_pred CCCCCCCCC
Q 040879 75 PGGPDPKHH 83 (83)
Q Consensus 75 PGGPDPqHH 83 (83)
..=|||+||
T Consensus 187 ~~~~~~~~~ 195 (198)
T 4ghu_A 187 SDLPDPHHH 195 (198)
T ss_dssp TTCC-----
T ss_pred ccCCCCccc
Confidence 456888877
No 3
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=36.82 E-value=8.6 Score=28.65 Aligned_cols=11 Identities=55% Similarity=1.126 Sum_probs=9.4
Q ss_pred cccCCCCCCCC
Q 040879 71 ERVSPGGPDPK 81 (83)
Q Consensus 71 kRlSPGGPDPq 81 (83)
+||.|||+||+
T Consensus 172 ~rL~pgglDP~ 182 (265)
T 1us7_B 172 KRLGPGGLDPV 182 (265)
T ss_dssp TTCCTTSCCHH
T ss_pred hccCCCCCCHH
Confidence 77789999994
No 4
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=34.68 E-value=25 Score=21.30 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=8.1
Q ss_pred CCCCcccCCCCCCCCCC
Q 040879 67 YYDSERVSPGGPDPKHH 83 (83)
Q Consensus 67 ~~~skRlSPGGPDPqHH 83 (83)
.....|.=.+||.|+||
T Consensus 98 ~~~r~R~~~~~~~~~~~ 114 (116)
T 2fy1_A 98 ASSRNRSPSGSLEHHHH 114 (116)
T ss_dssp CCSSCCCSCCC------
T ss_pred CCCCCCccceecccccc
Confidence 44567888899999987
No 5
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=30.87 E-value=13 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=8.9
Q ss_pred CCchHHHHHHHHHHHHHhhc
Q 040879 1 MASLKFWACLALLLMTISRF 20 (83)
Q Consensus 1 MA~l~~~lc~iLlll~~s~~ 20 (83)
|++.. +-|-+|+|++...+
T Consensus 1 M~k~~-~~cwilvLfva~ws 19 (30)
T 1skh_A 1 MVKSK-IGSWILVLFVAMWS 19 (30)
T ss_dssp CCTTT-TTTHHHHHHHHHHH
T ss_pred CCccc-ccHHHHHHHHHHHh
Confidence 55554 34544444444433
No 6
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=28.21 E-value=12 Score=25.42 Aligned_cols=7 Identities=43% Similarity=0.828 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 040879 77 GPDPKHH 83 (83)
Q Consensus 77 GPDPqHH 83 (83)
||+||||
T Consensus 244 ~~~~~~~ 250 (250)
T 3nyw_A 244 GHHHHHH 250 (250)
T ss_dssp -------
T ss_pred cccccCC
Confidence 3444443
No 7
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=26.00 E-value=17 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=3.3
Q ss_pred cCCCCCCCCCC
Q 040879 73 VSPGGPDPKHH 83 (83)
Q Consensus 73 lSPGGPDPqHH 83 (83)
++|-||.|+||
T Consensus 120 ~~~~~~~~~~~ 130 (130)
T 2kuc_A 120 VESEGHHHHHH 130 (130)
T ss_dssp HSCCC------
T ss_pred HHhccccccCC
Confidence 56667777776
No 8
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=25.35 E-value=14 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=3.5
Q ss_pred CcccCCCCCCCCCC
Q 040879 70 SERVSPGGPDPKHH 83 (83)
Q Consensus 70 skRlSPGGPDPqHH 83 (83)
...+.+...||+||
T Consensus 111 ~L~V~~~~~~~~~~ 124 (127)
T 2jju_A 111 ELSVRAKPSTRHHH 124 (127)
T ss_dssp EEEEEC--------
T ss_pred EEEEeecCCCcccc
Confidence 44566778999987
No 9
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=23.91 E-value=18 Score=22.06 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=0.4
Q ss_pred CCCCCCC
Q 040879 77 GPDPKHH 83 (83)
Q Consensus 77 GPDPqHH 83 (83)
|=||+||
T Consensus 78 Gidp~~~ 84 (88)
T 3jtz_A 78 NINLEHH 84 (88)
T ss_dssp C------
T ss_pred CCCchhc
Confidence 4477766
No 10
>2gec_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, viral, viral protein; 1.30A {Infectious bronchitis virus} SCOP: b.148.1.1 PDB: 2bxx_A 2c86_A 2btl_A
Probab=21.87 E-value=29 Score=23.69 Aligned_cols=13 Identities=46% Similarity=0.598 Sum_probs=10.6
Q ss_pred CCCcccCCCCCCC
Q 040879 68 YDSERVSPGGPDP 80 (83)
Q Consensus 68 ~~skRlSPGGPDP 80 (83)
.=+.|+++||||-
T Consensus 118 ~lP~~f~~G~p~~ 130 (139)
T 2gec_A 118 QYPLRFSDGGPDG 130 (139)
T ss_dssp CBCCCCTTCCBCT
T ss_pred ccccccCCCCCCC
Confidence 4578999999983
No 11
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=21.72 E-value=48 Score=18.92 Aligned_cols=8 Identities=38% Similarity=0.999 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 040879 8 ACLALLLM 15 (83)
Q Consensus 8 lc~iLlll 15 (83)
+|+||+++
T Consensus 35 fclilicl 42 (52)
T 1fjk_A 35 FCLILIFL 42 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555444
No 12
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=20.61 E-value=35 Score=20.98 Aligned_cols=9 Identities=67% Similarity=1.217 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q 040879 74 SPGGPDPKHH 83 (83)
Q Consensus 74 SPGGPDPqHH 83 (83)
+-||| ||||
T Consensus 60 ~g~g~-~~~~ 68 (78)
T 1kn7_A 60 SGGGP-HHHH 68 (78)
T ss_dssp CCCCC-CCCS
T ss_pred CCCCC-cccc
Confidence 45778 7776
Done!