Query 040879
Match_columns 83
No_of_seqs 38 out of 40
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 20:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040879.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040879hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1us7b_ a.205.1.1 (B:) Hsp90 c 28.8 6.6 0.00048 26.4 0.4 12 70-81 137-148 (201)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 20.7 28 0.002 16.2 1.7 12 2-13 3-14 (26)
3 d1kona_ e.39.1.1 (A:) Hypothet 20.3 11 0.00079 25.3 0.2 6 76-81 37-42 (244)
4 d1j6ra_ d.173.1.2 (A:) Hypothe 19.0 22 0.0016 23.0 1.6 14 66-79 143-156 (197)
5 d1lfpa_ e.39.1.1 (A:) Hypothet 16.5 12 0.00087 24.9 -0.4 6 76-81 35-40 (243)
6 d3b2ua2 g.3.9.1 (A:481-502) EG 12.7 17 0.0013 16.9 -0.3 6 77-82 13-18 (26)
7 d1k62b_ a.127.1.1 (B:) Arginin 10.0 26 0.0019 24.9 -0.3 11 71-81 431-441 (459)
8 d1m1la_ d.260.1.1 (A:) Suppres 9.8 38 0.0028 22.7 0.6 14 67-80 28-41 (236)
9 d1tjva_ a.127.1.1 (A:) Arginin 9.5 28 0.002 24.5 -0.3 11 71-81 420-430 (449)
10 d2geca1 b.148.1.1 (A:23-160) N 9.5 53 0.0038 20.7 1.2 13 67-79 116-128 (138)
No 1
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.84 E-value=6.6 Score=26.35 Aligned_cols=12 Identities=50% Similarity=1.035 Sum_probs=9.8
Q ss_pred CcccCCCCCCCC
Q 040879 70 SERVSPGGPDPK 81 (83)
Q Consensus 70 skRlSPGGPDPq 81 (83)
..|+-|||.||.
T Consensus 137 ~~r~gPggldp~ 148 (201)
T d1us7b_ 137 KKRLGPGGLDPV 148 (201)
T ss_dssp HTTCCTTSCCHH
T ss_pred hhcCCCCCCCHH
Confidence 458889999984
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.74 E-value=28 Score=16.17 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=7.1
Q ss_pred CchHHHHHHHHH
Q 040879 2 ASLKFWACLALL 13 (83)
Q Consensus 2 A~l~~~lc~iLl 13 (83)
|++.+|+|-+.+
T Consensus 3 aslaiw~fw~ff 14 (26)
T d1rzhh2 3 ASLAIYSFWIFL 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567666664443
No 3
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}
Probab=20.33 E-value=11 Score=25.31 Aligned_cols=6 Identities=67% Similarity=1.354 Sum_probs=0.5
Q ss_pred CCCCCC
Q 040879 76 GGPDPK 81 (83)
Q Consensus 76 GGPDPq 81 (83)
|||||.
T Consensus 37 GG~DP~ 42 (244)
T d1kona_ 37 GGGDPD 42 (244)
T ss_dssp -----C
T ss_pred CCCCCc
Confidence 788885
No 4
>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga maritima [TaxId: 2336]}
Probab=18.99 E-value=22 Score=22.99 Aligned_cols=14 Identities=43% Similarity=0.387 Sum_probs=11.4
Q ss_pred CCCCCcccCCCCCC
Q 040879 66 IYYDSERVSPGGPD 79 (83)
Q Consensus 66 ~~~~skRlSPGGPD 79 (83)
+.+.+.|.|||=||
T Consensus 143 ~~~~~~R~SPGY~d 156 (197)
T d1j6ra_ 143 NLEGSFRISPGYGD 156 (197)
T ss_dssp TSCBCCCBCTTSTT
T ss_pred hhcCCcccCCCCCC
Confidence 46778999999776
No 5
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}
Probab=16.46 E-value=12 Score=24.91 Aligned_cols=6 Identities=67% Similarity=1.763 Sum_probs=4.5
Q ss_pred CCCCCC
Q 040879 76 GGPDPK 81 (83)
Q Consensus 76 GGPDPq 81 (83)
|||||.
T Consensus 35 GG~DP~ 40 (243)
T d1lfpa_ 35 GGPNPE 40 (243)
T ss_dssp HCSCGG
T ss_pred CCCCCc
Confidence 678885
No 6
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.70 E-value=17 Score=16.87 Aligned_cols=6 Identities=50% Similarity=1.531 Sum_probs=3.9
Q ss_pred CCCCCC
Q 040879 77 GPDPKH 82 (83)
Q Consensus 77 GPDPqH 82 (83)
||.|+|
T Consensus 13 gpeprd 18 (26)
T d3b2ua2 13 GPEPRD 18 (26)
T ss_dssp SSSGGG
T ss_pred CCCCCc
Confidence 677765
No 7
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.01 E-value=26 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=8.6
Q ss_pred cccCCCCCCCC
Q 040879 71 ERVSPGGPDPK 81 (83)
Q Consensus 71 kRlSPGGPDPq 81 (83)
.|-|+|||-|+
T Consensus 431 ~r~~~GG~ap~ 441 (459)
T d1k62b_ 431 QYGALGGTARS 441 (459)
T ss_dssp TCCSTTSSSHH
T ss_pred hccCCCCCCHH
Confidence 57789999874
No 8
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.77 E-value=38 Score=22.70 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=10.5
Q ss_pred CCCCcccCCCCCCC
Q 040879 67 YYDSERVSPGGPDP 80 (83)
Q Consensus 67 ~~~skRlSPGGPDP 80 (83)
+.--.+.-.|||||
T Consensus 28 ~~~~~~~~lGG~dp 41 (236)
T d1m1la_ 28 VTAIVKYWLGGPDP 41 (236)
T ss_dssp EECSSCGGGTCSCS
T ss_pred ecceeeeccCCCCC
Confidence 44455778899998
No 9
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
Probab=9.50 E-value=28 Score=24.52 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=8.8
Q ss_pred cccCCCCCCCC
Q 040879 71 ERVSPGGPDPK 81 (83)
Q Consensus 71 kRlSPGGPDPq 81 (83)
.|-|+|||-|+
T Consensus 420 ~r~~~Gg~ap~ 430 (449)
T d1tjva_ 420 QYTALAGTAKS 430 (449)
T ss_dssp TCCSTTSSSHH
T ss_pred hccCCCCCCHH
Confidence 47799999874
No 10
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=9.48 E-value=53 Score=20.71 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=10.3
Q ss_pred CCCCcccCCCCCC
Q 040879 67 YYDSERVSPGGPD 79 (83)
Q Consensus 67 ~~~skRlSPGGPD 79 (83)
.....|+++|+||
T Consensus 116 ~~~PlrF~~glP~ 128 (138)
T d2geca1 116 DQYPLRFSDGGPD 128 (138)
T ss_dssp CCBCCCCTTCCBC
T ss_pred cccceecCCCCCC
Confidence 3446799999998
Done!