Query 040886
Match_columns 475
No_of_seqs 302 out of 969
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 4.8E-90 1E-94 713.3 40.3 381 39-421 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 5E-62 1.1E-66 521.9 22.0 400 28-430 72-597 (625)
3 PF04632 FUSC: Fusaric acid re 100.0 1.6E-26 3.5E-31 255.4 33.9 211 48-284 1-212 (650)
4 PRK10631 p-hydroxybenzoic acid 100.0 5E-26 1.1E-30 248.5 31.5 219 42-284 2-230 (652)
5 TIGR01667 YCCS_YHJK integral m 100.0 6.6E-25 1.4E-29 243.1 39.6 283 32-350 366-649 (701)
6 TIGR01666 YCCS hypothetical me 99.9 7E-25 1.5E-29 242.4 37.1 307 32-382 364-671 (704)
7 PRK11427 multidrug efflux syst 99.9 1.5E-21 3.3E-26 212.5 28.8 221 40-280 342-563 (683)
8 PRK11427 multidrug efflux syst 99.8 3.9E-16 8.5E-21 170.5 31.5 168 44-232 25-202 (683)
9 COG1289 Predicted membrane pro 99.7 1.1E-15 2.3E-20 170.4 27.4 184 39-239 345-530 (674)
10 COG1289 Predicted membrane pro 99.6 1.3E-13 2.8E-18 153.9 30.5 216 45-284 7-225 (674)
11 COG4129 Predicted membrane pro 99.6 2.8E-13 6E-18 138.0 29.8 159 50-231 11-169 (332)
12 PF13515 FUSC_2: Fusaric acid 99.6 4E-14 8.7E-19 124.5 13.3 114 77-203 12-128 (128)
13 PF10334 DUF2421: Protein of u 99.5 2.2E-12 4.8E-17 125.7 22.1 212 207-425 1-229 (229)
14 PF06081 DUF939: Bacterial pro 99.5 1.3E-12 2.9E-17 118.0 15.7 136 51-207 6-141 (141)
15 PF10337 DUF2422: Protein of u 99.4 3.1E-09 6.6E-14 113.8 34.7 268 38-313 5-314 (459)
16 PF04632 FUSC: Fusaric acid re 99.1 8E-08 1.7E-12 106.8 31.1 177 44-231 335-513 (650)
17 PF12805 FUSC-like: FUSC-like 98.8 1.7E-06 3.6E-11 87.1 25.7 176 185-381 70-253 (284)
18 TIGR01666 YCCS hypothetical me 98.7 3.8E-05 8.3E-10 86.2 31.3 170 47-233 6-176 (704)
19 TIGR01667 YCCS_YHJK integral m 98.6 2.9E-05 6.2E-10 87.3 28.5 290 47-380 6-308 (701)
20 PRK10631 p-hydroxybenzoic acid 97.7 0.043 9.4E-07 61.4 28.7 157 48-220 352-514 (652)
21 PF11168 DUF2955: Protein of u 94.3 1.3 2.8E-05 40.0 13.1 137 52-206 2-139 (140)
22 TIGR02865 spore_II_E stage II 93.5 17 0.00037 41.9 23.3 121 102-238 189-330 (764)
23 PF12732 YtxH: YtxH-like prote 81.6 6.6 0.00014 31.3 6.8 44 191-235 3-46 (74)
24 TIGR00796 livcs branched-chain 76.1 1.1E+02 0.0024 32.3 17.7 75 36-119 201-278 (378)
25 PF10011 DUF2254: Predicted me 72.8 64 0.0014 33.8 13.0 125 101-241 46-176 (371)
26 PRK11677 hypothetical protein; 67.8 25 0.00054 31.7 7.4 49 191-239 8-57 (134)
27 COG4129 Predicted membrane pro 63.3 40 0.00087 35.0 9.0 23 98-120 6-28 (332)
28 COG5336 Uncharacterized protei 56.2 65 0.0014 28.0 7.4 22 101-122 49-70 (116)
29 PF07155 ECF-ribofla_trS: ECF- 53.7 1.7E+02 0.0036 26.6 10.6 19 106-124 49-67 (169)
30 PF10225 DUF2215: Uncharacteri 53.5 2.4E+02 0.0052 28.0 12.5 82 147-231 57-141 (249)
31 PF13295 DUF4077: Domain of un 51.9 1.7E+02 0.0037 25.8 9.5 80 133-217 53-144 (175)
32 COG2211 MelB Na+/melibiose sym 50.2 2.2E+02 0.0047 31.1 12.2 84 40-128 78-179 (467)
33 COG4980 GvpP Gas vesicle prote 48.9 70 0.0015 28.1 6.7 45 190-235 8-52 (115)
34 PF06081 DUF939: Bacterial pro 46.9 2.1E+02 0.0046 25.5 10.2 39 80-119 100-138 (141)
35 PF12841 YvrJ: YvrJ protein fa 46.4 51 0.0011 23.1 4.4 29 395-423 9-37 (38)
36 PRK12821 aspartyl/glutamyl-tRN 46.4 3.9E+02 0.0085 29.0 13.0 114 91-205 94-239 (477)
37 PF04286 DUF445: Protein of un 44.5 18 0.00038 37.0 2.8 20 102-121 344-363 (367)
38 PF06295 DUF1043: Protein of u 43.7 1.1E+02 0.0025 27.0 7.5 40 191-230 4-44 (128)
39 COG5547 Small integral membran 38.1 1.4E+02 0.0031 22.9 6.0 24 98-121 4-27 (62)
40 TIGR02135 phoU_full phosphate 36.7 3.3E+02 0.0072 25.0 10.0 93 328-426 113-205 (212)
41 COG4258 Predicted exporter [Ge 35.5 4.1E+02 0.0088 30.1 11.3 112 95-212 662-784 (788)
42 PF12805 FUSC-like: FUSC-like 35.1 4.7E+02 0.01 26.0 24.4 51 180-231 69-123 (284)
43 COG4956 Integral membrane prot 34.8 2.7E+02 0.0058 28.8 9.2 27 100-126 3-30 (356)
44 PRK11412 putative uracil/xanth 34.5 4.3E+02 0.0093 28.5 11.4 42 163-209 174-215 (433)
45 PF13515 FUSC_2: Fusaric acid 32.9 1.1E+02 0.0023 26.0 5.6 42 166-210 18-59 (128)
46 PF11744 ALMT: Aluminium activ 32.7 1.7E+02 0.0038 31.2 8.0 43 163-207 42-84 (406)
47 PF05525 Branch_AA_trans: Bran 32.2 6.7E+02 0.015 27.0 13.4 127 35-185 206-336 (427)
48 PRK11660 putative transporter; 29.5 3.5E+02 0.0075 30.0 10.1 18 191-208 424-441 (568)
49 COG1113 AnsP Gamma-aminobutyra 28.6 8E+02 0.017 26.8 12.1 112 87-212 69-183 (462)
50 PF03904 DUF334: Domain of unk 28.5 5.8E+02 0.013 25.1 10.2 19 44-62 141-159 (230)
51 TIGR03480 HpnN hopanoid biosyn 28.4 3.1E+02 0.0067 32.1 9.9 19 192-210 836-854 (862)
52 PF10112 Halogen_Hydrol: 5-bro 27.9 1.6E+02 0.0035 27.7 6.3 17 103-119 6-22 (199)
53 TIGR02135 phoU_full phosphate 27.5 2E+02 0.0044 26.4 6.9 95 328-428 9-106 (212)
54 PF05478 Prominin: Prominin; 26.3 1.1E+03 0.023 27.5 18.8 39 193-233 153-191 (806)
55 COG1283 NptA Na+/phosphate sym 25.7 3E+02 0.0066 30.5 8.5 91 328-425 335-427 (533)
56 COG2733 Predicted membrane pro 25.4 30 0.00065 36.5 0.8 21 102-122 391-411 (415)
57 PF10779 XhlA: Haemolysin XhlA 25.3 72 0.0016 25.2 2.8 17 104-120 52-68 (71)
58 PF05433 Rick_17kDa_Anti: Glyc 25.1 45 0.00098 23.8 1.4 19 98-116 17-35 (42)
59 KOG1636 DNA polymerase delta p 24.8 76 0.0017 31.2 3.3 28 408-435 10-37 (260)
60 COG0555 CysU ABC-type sulfate 24.6 3.3E+02 0.0072 27.5 7.9 52 180-231 125-176 (274)
61 PF14015 DUF4231: Protein of u 24.3 2.4E+02 0.0052 23.6 6.1 11 106-116 27-37 (112)
62 PF06496 DUF1097: Protein of u 24.3 5.2E+02 0.011 23.1 14.9 63 80-144 22-84 (144)
63 PF06123 CreD: Inner membrane 23.6 2.6E+02 0.0056 30.2 7.4 29 78-106 353-381 (430)
64 PRK11115 transcriptional regul 23.2 2.8E+02 0.0061 26.4 7.1 94 328-425 20-114 (236)
65 PF03419 Peptidase_U4: Sporula 23.2 3.3E+02 0.0072 27.3 7.9 19 101-119 33-51 (293)
66 TIGR00930 2a30 K-Cl cotranspor 23.1 4.4E+02 0.0095 31.5 9.8 27 92-119 140-166 (953)
67 PRK09823 putative inner membra 22.6 5.9E+02 0.013 23.2 9.9 92 101-207 12-104 (160)
68 COG0659 SUL1 Sulfate permease 22.3 5.2E+02 0.011 28.8 9.7 18 191-208 393-410 (554)
69 PF10031 DUF2273: Small integr 22.3 3.3E+02 0.0073 20.2 6.1 18 102-119 8-25 (51)
70 KOG1172 Na+-independent Cl/HCO 22.3 5.7E+02 0.012 30.1 10.0 40 164-203 450-489 (876)
71 PRK09400 secE preprotein trans 21.9 3.8E+02 0.0083 20.7 6.3 46 22-67 5-51 (61)
72 PF03127 GAT: GAT domain; Int 21.7 4.7E+02 0.01 21.7 7.5 83 329-422 9-92 (100)
73 PF08893 DUF1839: Domain of un 21.4 4E+02 0.0086 27.5 7.8 75 300-381 239-317 (319)
74 KOG4514 Uncharacterized conser 21.3 6E+02 0.013 24.2 8.3 35 323-357 124-158 (222)
75 COG4139 BtuC ABC-type cobalami 20.5 2.8E+02 0.0061 27.5 6.2 34 186-220 143-176 (326)
76 PF01895 PhoU: PhoU domain; I 20.2 4.1E+02 0.0088 20.4 6.5 25 398-422 62-86 (88)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=4.8e-90 Score=713.28 Aligned_cols=381 Identities=59% Similarity=0.960 Sum_probs=366.9
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 39 IKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGA 118 (475)
Q Consensus 39 ~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~ 118 (475)
|++|++||||++|++|+|+|++|+++++|.+|.|+.++.|++||++||++|++||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Q 040886 119 HHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGS 198 (475)
Q Consensus 119 ~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ 198 (475)
.+++...|+..+++++++++|+++++++|++++|.+|+||+||+++|++||++|++++|++++.+++|.+|+++|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCCCcchhHHHHHHHHHhcccchHHHHHhHh
Q 040886 199 ACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDG--ESSNKDEKSFMQEYKSALNSKSSEESLANFA 276 (475)
Q Consensus 199 ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~~esL~~~a 276 (475)
+|++||++|||+|++++||+.++++++++++++++|+++|++..+++ +..++++++.+++|+++++|++++|+|+++|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A 240 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFA 240 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhh
Confidence 99999999999999999999999999999999999999999887654 1122357789999999999999999999999
Q ss_pred hhCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040886 277 RWEPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQAAPEIKSKIQEACTEMSLESGRALKELTLAIKKTSQ 356 (475)
Q Consensus 277 ~~Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~p~~~r~~l~~~~~~l~~~~~~~L~~La~sl~~~~~ 356 (475)
+|||+||+|+|+|||++|.|+++.+|||+|+++|||+|+++++|+|+++|++++++|.+++.|++++|++|+.++++|+
T Consensus 241 ~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik~m~- 319 (406)
T PF11744_consen 241 RWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIKTMT- 319 (406)
T ss_pred hhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCC-----------------------cccCCchhhhhHHHHHHHHHHHHHHHHHH
Q 040886 357 QPITSADTHIKNAKSAAKNLNTLLKSGI-----------------------WEDCDLLTVVPVATVASLLIDVVNCTEKV 413 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~a~~~L~~~l~~~~-----------------------~~~~~~~~~~~~at~asllieiv~~l~~l 413 (475)
++++.+.++.++++|+|+||..|++.+ +++.++++++|++||||||||+|+|+|++
T Consensus 320 -~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~i 398 (406)
T PF11744_consen 320 -KSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENI 398 (406)
T ss_pred -cCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 767778899999999999999998887 77889999999999999999999999999
Q ss_pred HHHHHHHH
Q 040886 414 AESAYELA 421 (475)
Q Consensus 414 ~~~v~eL~ 421 (475)
+|+|+||+
T Consensus 399 v~~v~eLa 406 (406)
T PF11744_consen 399 VEAVEELA 406 (406)
T ss_pred HHHHHhhC
Confidence 99999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=5e-62 Score=521.92 Aligned_cols=400 Identities=46% Similarity=0.785 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHH
Q 040886 28 KANVVEVVNKVIKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLA 107 (475)
Q Consensus 28 ~~~~~~~~~~~~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilG 107 (475)
-.|+.++.++.|+++.+|||+++|++|+|+|++|++++++..|+|+.+|.+++||++||++|+++++|+|+.||++|.+|
T Consensus 72 ~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~ 151 (625)
T KOG4711|consen 72 SAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVG 151 (625)
T ss_pred HHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 040886 108 TLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAH 187 (475)
Q Consensus 108 TliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~ 187 (475)
|+.+|.+|+.+.+++..+|...+++.++..+|+.++.++|++|+|.+|+ |+|+++|+++||+++.+++++.+++++.|.
T Consensus 152 tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~ 230 (625)
T KOG4711|consen 152 TLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYFLELAL 230 (625)
T ss_pred HhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHHHHHHH
Confidence 9999999999999999999767899999999999999999999999986 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-------HHHHHhccc--ccCCCC--Cc--chhH
Q 040886 188 KRLSTVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEG-------FGNEYFKTL--EDGESS--NK--DEKS 254 (475)
Q Consensus 188 ~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~-------~~~~y~~~~--~~~~~~--~~--~~~~ 254 (475)
.|+++|.+|..+|.+|++|+||.|++++||+..+.++..++.++++ |.++|+... +-...+ .+ ..++
T Consensus 231 ~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~s~~~~~ 310 (625)
T KOG4711|consen 231 QRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYKSAAWYP 310 (625)
T ss_pred HHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhhhcchhh
Confidence 9999999999999999999999999999999999999999999995 556665442 110001 11 2567
Q ss_pred HHHHHHHHhcccchHHHHHhHhhhCCCCC-CcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHH
Q 040886 255 FMQEYKSALNSKSSEESLANFARWEPGHG-RFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQAAPEIKSKIQEAC 333 (475)
Q Consensus 255 ~~~~~~~~l~s~~~~esL~~~a~~Ep~~g-~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~p~~~r~~l~~~~ 333 (475)
.+++|+++++++..+|+++++|.|||+|| .++|+|||++|.+++..+|+|+++++++|+|+.+++|+|.+++..+.++|
T Consensus 311 ~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~~~~~~l 390 (625)
T KOG4711|consen 311 LYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRNKFRLTL 390 (625)
T ss_pred hhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Confidence 88899999999999999999999999999 66799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC-ccccHHHHHHHHHHHHHHHhcCC--------c-------------------
Q 040886 334 TEMSLESGRALKELTLAIKKTSQQPITS-ADTHIKNAKSAAKNLNTLLKSGI--------W------------------- 385 (475)
Q Consensus 334 ~~l~~~~~~~L~~La~sl~~~~~~~~~~-~~~~~~~~~~a~~~L~~~l~~~~--------~------------------- 385 (475)
.+++.++.+++++++.++++|++ .++ .+.+....+.|.++|+..+.+.| |
T Consensus 391 ~rva~e~~kvl~~~~~~~~~~~~--~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~ 468 (625)
T KOG4711|consen 391 RRVAIEISKVLRPFRAKVELMYK--LSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEVNHEP 468 (625)
T ss_pred HHhhHHHHHHHHHHHHHHHhhhc--cCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhhccch
Confidence 99999999999999999999994 444 38889999999999999876643 1
Q ss_pred --------------------------------------------------------------------------------
Q 040886 386 -------------------------------------------------------------------------------- 385 (475)
Q Consensus 386 -------------------------------------------------------------------------------- 385 (475)
T Consensus 469 ~~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~~~~p~~~~ 548 (625)
T KOG4711|consen 469 NLKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIPRVVPILSR 548 (625)
T ss_pred hhcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCccccccccc
Confidence
Q ss_pred ---ccCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 040886 386 ---EDCDLLTVVPVATVAS-LLIDVVNCTEKVAESAYELASAANFESID 430 (475)
Q Consensus 386 ---~~~~~~~~~~~at~as-llieiv~~l~~l~~~v~eL~~~a~F~~~~ 430 (475)
+..+..+.+++++|+| +|++++++++.++++++||+++++|++.+
T Consensus 549 ~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~ 597 (625)
T KOG4711|consen 549 ATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYD 597 (625)
T ss_pred cccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccc
Confidence 0012345678999999 99999999999999999999999999854
No 3
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.96 E-value=1.6e-26 Score=255.39 Aligned_cols=211 Identities=24% Similarity=0.372 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 040886 48 RITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGE 127 (475)
Q Consensus 48 ~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~ 127 (475)
+++|++|+++|++++.++.+.-.+ ++++||++||+||+||+.|+++.||++|++||++|+++|+++..+ +++
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l-----~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~---~~~ 72 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQL-----PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVAL---FPQ 72 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc
Confidence 478999999999998777653222 467999999999999999999999999999999999999999743 334
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040886 128 IGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRD-DEILELAHKRLSTVIIGGSACIIISIL 206 (475)
Q Consensus 128 ~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~-~~~~~~A~~R~~~I~iGi~ia~lVs~~ 206 (475)
.+..+++++.+|+ +++.|...+ .+.+++|+++++++|.++|.+++..+ +++|+++++|+.+|++|++|+++|+.+
T Consensus 73 ~p~l~~~~lal~i--~~c~~~~~~--~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 73 SPLLFLLALALWI--GLCLYLSLL--DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred CHHHHHHHHHHHH--HHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 233333322 23467999999999999999998765 578999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHhcccchHHHHHhHhhhCCCCCC
Q 040886 207 ICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEYKSALNSKSSEESLANFARWEPGHGR 284 (475)
Q Consensus 207 i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esL~~~a~~Ep~~g~ 284 (475)
+||.++++.|++.+.+.+.++++++.... .+.+. .+. ..+++.++..+.+.+..++.+|.+..+
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l----~~~~~-------~~~---~~~~l~~~~~~l~~~~~~~~~e~~~~~ 212 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALL----DGDPD-------PAA---ERRRLARDIAALESLLSHARYESPRLR 212 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCcc-------cch---HHHHHHHHHHHHHHHHhhccccCchhH
Confidence 99999999999999999999998886543 22111 111 345666667789999999999986544
No 4
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.95 E-value=5e-26 Score=248.52 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=173.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhc---------ccchhHHHHHHHHHHHHHHHHH
Q 040886 42 GKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVF---------EFSVGATLGKGLNRGLATLVAG 112 (475)
Q Consensus 42 ~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~---------qptvGatl~kg~~RilGTliGa 112 (475)
..+++++++|++|+++|+.++.++.+.-.+ ++++||++||+||+ ||..|+++.||++|++||++|+
T Consensus 2 ~~p~~~~~~falk~~lA~~LAL~ia~~l~L-----~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa 76 (652)
T PRK10631 2 FSIANQRLRFAVKLAFAIVLALFVGFHFQL-----ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGC 76 (652)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHH
Confidence 356788999999999999998877653322 46799999999999 9999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 040886 113 GLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRD-DEILELAHKRLS 191 (475)
Q Consensus 113 ~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~-~~~~~~A~~R~~ 191 (475)
+.|+++..+ +++. |+++.+.+.++.++++|...+ .+.+++|++.++++|.++|+++...+ +++|++|+.|+.
T Consensus 77 ~~~l~l~~~---f~~~--p~l~~l~l~lWig~c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~ 149 (652)
T PRK10631 77 IAALVIIIA---TIRA--PLLMILLCCIWAGFCTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCS 149 (652)
T ss_pred HHHHHHHHH---hcCC--hHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 999999743 3343 443333333333333443322 23467999999999999999998775 568999999999
Q ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHhcccchHHH
Q 040886 192 TVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEYKSALNSKSSEES 271 (475)
Q Consensus 192 ~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~es 271 (475)
||++|++|+.+|+.+++|.+.++.+++.+.+.+.+..++++.+.. ..+ .++......++..+...+|.
T Consensus 150 Ei~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~----~~~--------~~~~~~~~~~L~~di~~le~ 217 (652)
T PRK10631 150 EIVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIK----HGD--------KEEVDKAWGDLVRRTTALNG 217 (652)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhc----cCc--------cchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876542 111 11232445677778889999
Q ss_pred HHhHhhhCCCCCC
Q 040886 272 LANFARWEPGHGR 284 (475)
Q Consensus 272 L~~~a~~Ep~~g~ 284 (475)
+..++.||.++.+
T Consensus 218 lr~~~~~e~~~~r 230 (652)
T PRK10631 218 MRSNLMMESSRWQ 230 (652)
T ss_pred HHHhhccCCcchh
Confidence 9999999987655
No 5
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.95 E-value=6.6e-25 Score=243.11 Aligned_cols=283 Identities=17% Similarity=0.225 Sum_probs=194.8
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 040886 32 VEVVNKVIKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVA 111 (475)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliG 111 (475)
.+++..++.....|...++||+|+++|++++..+....+. +||||+++|+++|+||+.|+|..|+.+|++||++|
T Consensus 366 ~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l-----~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G 440 (701)
T TIGR01667 366 KDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTAL-----HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVG 440 (701)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3455666667777888999999999999998877643322 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 040886 112 GGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLS 191 (475)
Q Consensus 112 a~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~ 191 (475)
+++|+++.++.+ .+ . ..+.+.+ ++++ .. ++ ++ +.+|++.++++|..++........+.++++..|+.
T Consensus 441 ~llg~~l~~l~p---~~-~-~~l~l~v-~~~~-~~---~~--~~-~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~ 507 (701)
T TIGR01667 441 LVIGVALHFLIP---SL-E-GQLTLMV-ITGV-AF---FA--FR-SKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLI 507 (701)
T ss_pred HHHHHHHHHHcC---cH-H-HHHHHHH-HHHH-HH---HH--HH-HhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 999998876532 11 1 1111111 1111 11 11 11 34688888889975555433322245788999999
Q ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHhcccchHHH
Q 040886 192 TVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEYKSALNSKSSEES 271 (475)
Q Consensus 192 ~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~es 271 (475)
+|++|+++|++++.++||.|.+.++++.+.+.++..+++++.++++|.+++.+ +.......++..++.+++++
T Consensus 508 DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~-------~~~yr~aRr~a~~a~a~l~~ 580 (701)
T TIGR01667 508 DTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPD-------DLAYRIARRNAHNTDAALST 580 (701)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-------hhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888654221 11122345667778888999
Q ss_pred HHhHhhhCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 272 LANFARWEPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQA-APEIKSKIQEACTEMSLESGRALKELTLA 350 (475)
Q Consensus 272 L~~~a~~Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~-p~~~r~~l~~~~~~l~~~~~~~L~~La~s 350 (475)
..+.+..||++.+ ..++....+....+.....+.+|..+ +.+. .+++.. ...+.++.+.+.|..+...
T Consensus 581 ~~~~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~---r~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 649 (701)
T TIGR01667 581 TLSNMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAH---RERLLNPELAA----ELLQACEIVAKAIQRCQAR 649 (701)
T ss_pred HHHHHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhc---ccccCChhHHH----HHHHHHHHHHHHHHHHHHh
Confidence 9999999997654 22333333333334344444444422 1121 223333 3344455566677766666
No 6
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.95 E-value=7e-25 Score=242.36 Aligned_cols=307 Identities=14% Similarity=0.128 Sum_probs=206.4
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 040886 32 VEVVNKVIKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVA 111 (475)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliG 111 (475)
.+.++.++.-...|...++||+|++++++++.++...-+. +||||+++|+++|+||+.|+|..|+.+|++||++|
T Consensus 364 ~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l-----~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG 438 (704)
T TIGR01666 364 KNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGF-----NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLG 438 (704)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 3455566666677888999999999999998877643332 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 040886 112 GGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLS 191 (475)
Q Consensus 112 a~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~ 191 (475)
+++|+++.++.+ . ....+.+ +.+.+. .|+.+ . +.+|++.++++|..++....... +.++++..|+.
T Consensus 439 ~~lg~~ll~l~p---~--~~~~l~l-iv~~~~--l~~~~---~--~~~Y~~a~~fiT~~vll~~~l~g-~~~~~~~~Rl~ 504 (704)
T TIGR01666 439 VVIGSPLLYFNP---S--LELQLVL-VVLTGV--LFFAF---R--SNNYSFATFFITLLVLLCFNVLG-EGAAVLLPRLL 504 (704)
T ss_pred HHHHHHHHHHhc---c--HHHHHHH-HHHHHH--HHHHH---H--HHhHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 999999876643 1 1111111 111111 11111 1 24677777788876665433322 35788999999
Q ss_pred HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHH-HHHHHHhcccchHH
Q 040886 192 TVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFM-QEYKSALNSKSSEE 270 (475)
Q Consensus 192 ~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~~e 270 (475)
+|+||+++|++++.++||.|++.++++.+++.++..+++++.++++|..++. ++..| ...|+..++.++++
T Consensus 505 dTlIG~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~--------~~~~yr~aRR~a~~~~a~l~ 576 (704)
T TIGR01666 505 DTLIGCAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKS--------DDLKYRIARRNAHNYDAALS 576 (704)
T ss_pred HHHHHHHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------chhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988865432 22222 34677778888999
Q ss_pred HHHhHhhhCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 271 SLANFARWEPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQAAPEIKSKIQEACTEMSLESGRALKELTLA 350 (475)
Q Consensus 271 sL~~~a~~Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~p~~~r~~l~~~~~~l~~~~~~~L~~La~s 350 (475)
+..+.+.-||++.+ ..|+..-++....+.....+-+|..+ +.+.+. ..+....++.+..+...|..++..
T Consensus 577 ~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~---r~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 646 (704)
T TIGR01666 577 TTVSNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAH---RDRLKN---LQQTAQFLDGFYPVAKKLIYTLEH 646 (704)
T ss_pred HHHHHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhC---HhhCCC---hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999997644 23444334433333333333333322 111111 112233344455566666665555
Q ss_pred HHhccCCCCCCccccHHHHHHHHHHHHHHHhc
Q 040886 351 IKKTSQQPITSADTHIKNAKSAAKNLNTLLKS 382 (475)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~ 382 (475)
....- +.-..+.+.+.++|...+..
T Consensus 647 ~~~~~-------~~~~~~~~~~~~~~~~~l~~ 671 (704)
T TIGR01666 647 IEEIP-------EAIFNQQQESIETLELRKQE 671 (704)
T ss_pred ccccc-------cchhhhHHHHHHHHHHHHhh
Confidence 44211 11134566677777777765
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.90 E-value=1.5e-21 Score=212.47 Aligned_cols=221 Identities=18% Similarity=0.127 Sum_probs=157.5
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 40 KLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAH 119 (475)
Q Consensus 40 ~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~ 119 (475)
.-...|+..++|++|+.+|+++++.++..-++ .+++|+++|+++|+||+.|.|.+|+++|++||++|+++|+++.
T Consensus 342 ~dA~tNp~~~R~ALRt~lAa~La~~i~~~l~w-----~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~ 416 (683)
T PRK11427 342 ADAFTNPDYMRYALKTLLACLICYTFYSGVDW-----EGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFT 416 (683)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHcCC-----CccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456888999999999999998877543322 5789999999999999999999999999999999999999987
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHH
Q 040886 120 HLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGF-RDDEILELAHKRLSTVIIGGS 198 (475)
Q Consensus 120 ~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~-~~~~~~~~A~~R~~~I~iGi~ 198 (475)
++.. ++..+...+.+.++.+.+++.++. ....|++|+++.+++|+.++.+... ........+.+|+.+|++|++
T Consensus 417 v~l~--P~l~~~~~Llllllp~~llg~wv~---~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~ 491 (683)
T PRK11427 417 LLVM--PWLDNIVELLFVLAPIFLLGAWIA---TSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTV 491 (683)
T ss_pred HHhc--cccccHHHHHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHH
Confidence 4322 222222222222222211222211 1123678999999999988876432 222123456779999999999
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHhcccchHHHHHhHhhh
Q 040886 199 ACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEYKSALNSKSSEESLANFARW 278 (475)
Q Consensus 199 ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esL~~~a~~ 278 (475)
|+.+++.++||.|.+..+++.+.+.+..+++.++.. .+.+. +.+....+..+.+..+.++.|.+.....+
T Consensus 492 iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~--------~~~~~--~~~~~~~~~R~~l~~a~~~le~~~~rl~~ 561 (683)
T PRK11427 492 VSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIP--------RQQEV--TALRTYLQIRIGLHAAFNACEEMCQRVAL 561 (683)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcc--------cccch--hhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998876541 11100 00111112345566677889999999999
Q ss_pred CC
Q 040886 279 EP 280 (475)
Q Consensus 279 Ep 280 (475)
||
T Consensus 562 Ep 563 (683)
T PRK11427 562 ER 563 (683)
T ss_pred Cc
Confidence 99
No 8
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.77 E-value=3.9e-16 Score=170.46 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=127.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhh--cccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 44 DDPRRITHSIKVGLALTMVSIFYY--YQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHL 121 (475)
Q Consensus 44 ~d~~~~~falK~glA~~La~ll~~--~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i 121 (475)
..|.+.-..+|+.+|.+++..+.+ ..| +.+|++.||++|+||..|.|..|+++|++||++|+++++++.-.
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~~l~~P-------~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~ 97 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISMTFEIP-------FLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKW 97 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666999999888765543 334 45899999999999999999999999999999999999988632
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH--HhcCCCc-hHHHHHHHHHHHH-----H
Q 040886 122 ASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLI--SVSGFRD-DEILELAHKRLST-----V 193 (475)
Q Consensus 122 ~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV--~l~~~~~-~~~~~~A~~R~~~-----I 193 (475)
..+ .|.+..+.+.++.+++.|+ . .-+|.+|.+.++++| .++ .+++..+ ++ +..|..+ |
T Consensus 98 --~v~---~P~l~~l~ialw~~~~lyl---~-r~~rl~yvf~lag~t-aii~~~f~~v~~~~E----~~~R~~e~~w~~i 163 (683)
T PRK11427 98 --SYG---YPLIRLIIAGPILMGCMFL---M-RTHRLGLVFFAVAIV-AIYGQTFPAMLDYPE----VVVRLTLWCIVVG 163 (683)
T ss_pred --hcc---chHHHHHHHHHHHHHHHHH---h-hccchhHHHHHHHHH-HHHHhhcccccchHH----HHHHHHHHHHHHH
Confidence 222 3555444444443333333 2 224579999999999 477 5565554 33 3889999 9
Q ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Q 040886 194 IIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLE 232 (475)
Q Consensus 194 ~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~ 232 (475)
.+|++|+.+||.++||.+.+..++..+.+.+++.++++.
T Consensus 164 ~~gi~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 164 LYPTLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988888776653
No 9
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.73 E-value=1.1e-15 Score=170.44 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=134.9
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 040886 39 IKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFS-VGATLGKGLNRGLATLVAGGLGVG 117 (475)
Q Consensus 39 ~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qpt-vGatl~kg~~RilGTliGa~lg~~ 117 (475)
....++++..++|++|+++|+.+++++.....+ ++|+|+++|+++|++|+ .|+|..++.+|++||++|..+|++
T Consensus 345 ~~~~~~~~~alr~a~R~ala~~~~~~~~~~~~w-----~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~ 419 (674)
T COG1289 345 LAHHRLNSPALRHALRTALALLLGYAFWLALGW-----PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLL 419 (674)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888999999999999998776543221 57999999999999999 999999999999999999999999
Q ss_pred HHHHhhhcCCCch-hHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 040886 118 AHHLASLSGEIGE-PILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIG 196 (475)
Q Consensus 118 ~~~i~~~~g~~~~-p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iG 196 (475)
+.++.. +.... +.++.+..++++ . .... .+|.|+ ..++|+.+....+....+..++...|+.++++|
T Consensus 420 ~l~~~~--p~~~~~l~~l~~~~~l~~---~----~~~~-~~~~~a--~~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG 487 (674)
T COG1289 420 VLLLLL--PLIPGLLLLLLLAALLFA---A----GIRL-AKYRLA--TLGITLLVLFLVGLLGSNGPDYDLPRFLDTLLG 487 (674)
T ss_pred HHHHhc--ccchhHHHHHHHHHHHHH---H----HHHh-cchhHH--HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHH
Confidence 876542 22111 221111111111 1 1111 245554 444444444444433335678899999999999
Q ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 197 GSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYF 239 (475)
Q Consensus 197 i~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~ 239 (475)
++++++++.++||.|....+++...+.++...+.+......+.
T Consensus 488 ~lIa~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~ 530 (674)
T COG1289 488 SLIALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREP 530 (674)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998877665443
No 10
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.64 E-value=1.3e-13 Score=153.91 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=150.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040886 45 DPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASL 124 (475)
Q Consensus 45 d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~ 124 (475)
...+++|++|+.+|+.++.++.+.... ....|+++|+++|++|..|+.+.|+++|++||++|..++.++..+ .
T Consensus 7 ~~~~~~~~lr~~~a~~la~~~~~~~~l-----~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~--~ 79 (674)
T COG1289 7 TNADWRYALRTFLAACLALALAFLLGL-----PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVAL--L 79 (674)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCC-----CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHH--H
Confidence 445789999999999998877664322 345899999999999999999999999999999999999988633 2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcC--CCc-hHHHHHHHHHHHHHHHHHHHHH
Q 040886 125 SGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSG--FRD-DEILELAHKRLSTVIIGGSACI 201 (475)
Q Consensus 125 ~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~--~~~-~~~~~~A~~R~~~I~iGi~ia~ 201 (475)
+++ +.++++++.+|+ +.|......|. ...+|++.+++||+.++. +. ... ...++.+++|+.++++|+.|+-
T Consensus 80 ~~~-p~~f~~~~~~~~-~l~~~~~~~~~---~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~ 153 (674)
T COG1289 80 AQE-PWLFLLLLTLWL-GLCTAIGSLYR---TIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAP 153 (674)
T ss_pred ccC-cHHHHHHHHHHH-HHHHHHHHhhc---cHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233 455554444443 33434443343 346899999999999998 42 222 3479999999999999999999
Q ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHHHHHhcccchHHHHHhHhhhCCC
Q 040886 202 IISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEYKSALNSKSSEESLANFARWEPG 281 (475)
Q Consensus 202 lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~esL~~~a~~Ep~ 281 (475)
.++...+|.+.+..|-+.+......+....+.- ...+. .+.+.........++.....+.+... .+|..
T Consensus 154 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~----~~~~~------~~~~~~~~~~~~~l~~~~~~~~~r~~-~~~~~ 222 (674)
T COG1289 154 VVPLLESPSRLYQALANYLEAKSRLFAQLLLAA----AAGEL------LDTARQNAALVDALAQTLTLRLLRSA-GFEGS 222 (674)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHhccchhhhhh----hcCCc------ccHHHHhHHHHHHHHHHHHHHHHHHh-cccCC
Confidence 999998999888777765554444433332210 01100 11223333456666666667777766 77765
Q ss_pred CCC
Q 040886 282 HGR 284 (475)
Q Consensus 282 ~g~ 284 (475)
.++
T Consensus 223 ~~~ 225 (674)
T COG1289 223 RGR 225 (674)
T ss_pred chh
Confidence 544
No 11
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.64 E-value=2.8e-13 Score=138.02 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 040886 50 THSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIG 129 (475)
Q Consensus 50 ~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~ 129 (475)
...+|+|+|++++.+++..-.+ +.+..|.+|++++++||...|+.++++|++|+++|+++|+++.++ +|+
T Consensus 11 ~RtlKt~ia~~La~~ia~~l~~-----~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l---~g~-- 80 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHLLGL-----PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLL---FGQ-- 80 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---cCc--
Confidence 4689999999998877643211 235799999999999999999999999999999999999999744 464
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040886 130 EPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILICP 209 (475)
Q Consensus 130 ~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P 209 (475)
+|+.+|+.+.++..++..++ ..-|.....++...+.+.. ..+.++... |++++++|+++|++||.+++|
T Consensus 81 ~~~~~~v~~~i~i~~~~~~~--------~~~g~~~~~~~~~~ii~~~-~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~ 149 (332)
T COG4129 81 NPIAFGVVLLIIIPLLVLLK--------LENGVVPITVGVLHILVAA-MIPLFLIFN--RFLLVFVGVGVAFLVNLVMPP 149 (332)
T ss_pred cHHHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHHHHc-ccchhHHHH--HHHHHHHHHHHHHHHhhhcCC
Confidence 57777776666544433322 2333344444433333332 223334333 999999999999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 040886 210 VWAGQDLHNLIATNLEKLGKFL 231 (475)
Q Consensus 210 ~~a~~~L~~~l~~~l~~la~~l 231 (475)
+. .++.....+.....++.+
T Consensus 150 ~~--~~~~~~~~kv~~~~~~il 169 (332)
T COG4129 150 PD--YELKLYRAKVEAILASIL 169 (332)
T ss_pred ch--HHHHHHHHHHHHHHHHHH
Confidence 87 455544444444444444
No 12
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.57 E-value=4e-14 Score=124.46 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=87.1
Q ss_pred CcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 040886 77 VSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKA 156 (475)
Q Consensus 77 ~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~ 156 (475)
+|++|+.+|++++++|+.|++..|+.+|++||++|+++|++++++.+ + + +.+.+.+++..++..+. +
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~---~--~-~~~~~~~~~~~~~~~~~------~- 78 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFP---G--N-YVLILIVFLLMFLIFYF------L- 78 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--H-HHHHHHHHHHHHHHHHH------H-
Confidence 57899999999999999999999999999999999999999986542 2 2 32323333332222111 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 157 RYDYGLLIFILTFSLISVSGFR---DDEILELAHKRLSTVIIGGSACIII 203 (475)
Q Consensus 157 ~~~Y~~~i~~lT~~lV~l~~~~---~~~~~~~A~~R~~~I~iGi~ia~lV 203 (475)
++.|......+|+.++.+.++. +++.++.+..|+.++++|+++++++
T Consensus 79 ~~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 SKNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred hccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 3467778888998888877753 4566889999999999999999864
No 13
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.52 E-value=2.2e-12 Score=125.72 Aligned_cols=212 Identities=17% Similarity=0.203 Sum_probs=143.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC-CcchhHHHHHHHHHhcccchHHHHHhHhhhCCCCCCc
Q 040886 207 ICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESS-NKDEKSFMQEYKSALNSKSSEESLANFARWEPGHGRF 285 (475)
Q Consensus 207 i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~~esL~~~a~~Ep~~g~~ 285 (475)
.+|.+++..+++.+++.+..+++++..++..+....+..+.. ....+.+.+.+.++.....+++.++.+++|||+.++
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G- 79 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKG- 79 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC-
Confidence 479999999999999999999999987776665432111111 112345666677777888899999999999998655
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 040886 286 QFRHPWQRYLKIGNLTRQCAYRIDALNGY--LNTEIQAAPEIKSKI----QEACTEMSLESGRALKELTLAIKKTSQQPI 359 (475)
Q Consensus 286 ~~r~P~~~y~~i~~~lr~~~~~l~aL~~~--l~s~~q~p~~~r~~l----~~~~~~l~~~~~~~L~~La~sl~~~~~~~~ 359 (475)
+||.+.|.++... |..+++.|+.. +..... |.+.++.+ ...-..+.+++-.+|..+++|+++..|+|+
T Consensus 80 --~FP~~~Y~~l~~~---~~~il~~l~~l~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~pLP~ 153 (229)
T PF10334_consen 80 --RFPKETYQRLLEL---CQNILDLLSLLSYVSTRLE-PSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQPLPP 153 (229)
T ss_pred --CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 7899999999554 55556666553 333333 55554444 344456777888999999999999998877
Q ss_pred CCccccHHHHHHHHHHHHHHHhc-------CCcccCCchhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC
Q 040886 360 TSADTHIKNAKSAAKNLNTLLKS-------GIWEDCDLLTVVPVATVASLLI---DVVNCTEKVAESAYELASAAN 425 (475)
Q Consensus 360 ~~~~~~~~~~~~a~~~L~~~l~~-------~~~~~~~~~~~~~~at~aslli---eiv~~l~~l~~~v~eL~~~a~ 425 (475)
....+.+...-.-...+...-+. ...-+.+++....|..|.+.++ .|++++++++..|++|.|+.+
T Consensus 154 ~lp~pl~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~~~~~~~i~~~lD~lv~~vK~lvGE~~ 229 (229)
T PF10334_consen 154 YLPAPLVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVAVSAASSILERLDELVIVVKELVGEQY 229 (229)
T ss_pred cCCcchHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 65544333322222222111110 0011245566666666655444 999999999999999999863
No 14
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.47 E-value=1.3e-12 Score=118.02 Aligned_cols=136 Identities=23% Similarity=0.384 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch
Q 040886 51 HSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIGE 130 (475)
Q Consensus 51 falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~~ 130 (475)
..+|+++|.+++..++..-+. +++++|.+++++++|||...|++.+++|+.|+++|+++|+++..+. |+ +
T Consensus 6 r~iKtaiA~~la~~ia~~l~~-----~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~---g~--~ 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGL-----QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLIL---GY--N 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-----CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Cc--c
Confidence 468999999988766532111 4568999999999999999999999999999999999999987543 43 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040886 131 PILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILI 207 (475)
Q Consensus 131 p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i 207 (475)
|+.+++.+++....+..+ |.+-+...+.+++..+... .+++ +..+..|+.++++|+.++++||.++
T Consensus 76 ~~~~~l~v~i~i~~~~~l--------~~~~~~~~a~v~~~~i~~~--~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWL--------KLGEGIIVAAVTFVHILLS--GSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCCeehHHHHHHHHHHHc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 776666665533222211 2334445555555444433 3334 3449999999999999999999864
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.36 E-value=3.1e-09 Score=113.81 Aligned_cols=268 Identities=17% Similarity=0.182 Sum_probs=173.0
Q ss_pred HHhhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhh-cccchhHHHHHHHHHHHHHHHHHHHHH
Q 040886 38 VIKLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVV-FEFSVGATLGKGLNRGLATLVAGGLGV 116 (475)
Q Consensus 38 ~~~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV-~qptvGatl~kg~~RilGTliGa~lg~ 116 (475)
.|-.-..|.+.++--+|..++.+++.++++..|...++|..+|.+.|..+++ -.-.+|..+...+.=++|+.+|.+.|+
T Consensus 5 ~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~ 84 (459)
T PF10337_consen 5 AWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGL 84 (459)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3554455899999999999999999999998888888998899888877665 345688899999999999999999998
Q ss_pred HHHHHhhhcC-C-----------------Cc-hh-------------------HHHHHHHHHHHHHHHHHHHhhhhcchh
Q 040886 117 GAHHLASLSG-E-----------------IG-EP-------------------ILLGFFVFIQAAASTFIRFFPTIKARY 158 (475)
Q Consensus 117 ~~~~i~~~~g-~-----------------~~-~p-------------------~ll~l~vfl~~~~~~~~~~~~~~k~~~ 158 (475)
+..+++...- + .+ ++ .+.++++|+..++..++|.. .+++
T Consensus 85 l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p~~ 161 (459)
T PF10337_consen 85 LAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NPKL 161 (459)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---Ccch
Confidence 8888765432 1 01 11 33344444433333333321 1223
Q ss_pred hHHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 040886 159 DYGLLIFILTFSLISVSGFRDD--EILELAHKRLSTVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGN 236 (475)
Q Consensus 159 ~Y~~~i~~lT~~lV~l~~~~~~--~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~ 236 (475)
..+.++..+..++.+.++...+ ....++..=+.-.++|+++++++|++|||...+..+.+.+.+.+..+...++. -.
T Consensus 162 ~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~-~~ 240 (459)
T PF10337_consen 162 NFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDA-QR 240 (459)
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3332333333333333332222 23445555556779999999999999999999999999998888888888754 44
Q ss_pred HHhcccccCCCCC-cchhHHHHHHHHHhcccchHHHHHhHhhhCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 040886 237 EYFKTLEDGESSN-KDEKSFMQEYKSALNSKSSEESLANFARWEPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNG 313 (475)
Q Consensus 237 ~y~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~~esL~~~a~~Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~ 313 (475)
+|+...+...... .+-+.+.+.-.++.+.....+.-..+++.|-..|++ +-+.+..+...+|+....+..|..
T Consensus 241 ~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl----~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 241 NFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRL----SPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665543321100 000222222223333345778888999999988775 445677777777776555555544
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.12 E-value=8e-08 Score=106.76 Aligned_cols=177 Identities=16% Similarity=0.090 Sum_probs=127.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 44 DDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVF--EFSVGATLGKGLNRGLATLVAGGLGVGAHHL 121 (475)
Q Consensus 44 ~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~--qptvGatl~kg~~RilGTliGa~lg~~~~~i 121 (475)
|.+..+++++|+++++.+++++.....+ +.|.-+++++.|++ -.+.+....+...++.|+++|+++|+++.++
T Consensus 335 d~~~A~~~alra~la~~~~~l~Wi~t~W-----~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 335 DWPLALRNALRAFLAILIAGLFWIATGW-----PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999988877654321 24566777766665 7788889999999999999999999988743
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040886 122 ASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACI 201 (475)
Q Consensus 122 ~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~ 201 (475)
.. ++......++++++.+.++..+ ..-++++.|.++.+.++|.+.+.+++...--+.....+.+.+++|++++.
T Consensus 410 vl--P~~~~f~~L~l~l~~~l~~~~~----~~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~ 483 (650)
T PF04632_consen 410 VL--PHLDGFPLLALVLAPFLFLGGL----LMARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAA 483 (650)
T ss_pred hh--hccCcHHHHHHHHHHHHHHHHH----HHcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 2222222222333322222222 22356788877888888777776665543336788999999999999999
Q ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHH
Q 040886 202 IISILICPVWAGQDLHNLIATNLEKLGKFL 231 (475)
Q Consensus 202 lVs~~i~P~~a~~~L~~~l~~~l~~la~~l 231 (475)
++..+++|.......++.+.....++++..
T Consensus 484 l~~~li~p~~~~~~~rrl~~~~~~~l~~~~ 513 (650)
T PF04632_consen 484 LVFRLIRPFSPEWRRRRLLRALRRDLARLA 513 (650)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888887665
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.85 E-value=1.7e-06 Score=87.11 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhH---HHHHHHH
Q 040886 185 LAHKRLSTVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKS---FMQEYKS 261 (475)
Q Consensus 185 ~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~ 261 (475)
-++.+...+++|+++.++++.++||.+.....++.+++.+..+|++++. -.++++..+.. +.++. ..+.-.+
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~-ka~~~~p~~~~----~~~~~~~~l~~~q~~ 144 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRA-KARFFDPDQHD----DDEQLRIELAQQQIK 144 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcc----chhHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999999999999975 33333211110 00111 1111112
Q ss_pred HhcccchHHHHHhHhhhCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHH-----HHHHHHHH
Q 040886 262 ALNSKSSEESLANFARWEPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQAAPEIKSK-----IQEACTEM 336 (475)
Q Consensus 262 ~l~s~~~~esL~~~a~~Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~p~~~r~~-----l~~~~~~l 336 (475)
+.+.....++.+...+ .+.++. |....+++....-......+...+ +.. -.+++++. +...++++
T Consensus 145 v~~~~~~~R~~l~~~r-~~~~~~-----~~~~~~~ll~~~~~a~Dl~E~~~a---s~~-~y~~l~~~f~~~~~l~~~~~~ 214 (284)
T PF12805_consen 145 VNEALEQARELLLRRR-RSGRGK-----PSTYGRRLLLLFFEAVDLFERALA---SHY-DYEELREQFKHSDVLFRFQRL 214 (284)
T ss_pred HHHHHHHHHHHHHHhh-cccCCC-----CCcHHHHHHHHHHHHHHHHHHHHh---ccc-cHHHHHHHhcCChHHHHHHHH
Confidence 2222222222222221 132221 111222221112222222222221 111 12233333 34667888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHh
Q 040886 337 SLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLK 381 (475)
Q Consensus 337 ~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~ 381 (475)
..+.+..++.++.++...+ ++. +.++++.++++++..+.
T Consensus 215 l~~~a~~l~~ia~ai~~~~--~~~----~~~~l~~~l~~l~~~l~ 253 (284)
T PF12805_consen 215 LEQLAQALRQIAQAILRGR--PYH----HRNRLKRALEALEESLE 253 (284)
T ss_pred HHHHHHHHHHHHHHHHcCC--CCC----CchHHHHHHHHHHHHHH
Confidence 8889999999999999777 322 24667777888877764
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.66 E-value=3.8e-05 Score=86.21 Aligned_cols=170 Identities=12% Similarity=0.178 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-ccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040886 47 RRITHSIKVGLALTMVSIFYYY-QPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLS 125 (475)
Q Consensus 47 ~~~~falK~glA~~La~ll~~~-~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~ 125 (475)
.++.+++|+.+|+..+.++.+. ... .-++=+.+.++...-.+.-..+..=+.+++-|++..+++.+...+. +
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~~~~-----~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~ 78 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFFDIS-----SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--F 78 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCch-----hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 4678999999999777554322 110 1233345556555555666677777888888888888887776443 2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 126 GEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISI 205 (475)
Q Consensus 126 g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~ 205 (475)
++ |+++.+.+++.+++++++.-+ -+||. .+++.|. +|+++.....+.....+..-+.+++|.++-.+++.
T Consensus 79 ~~---p~lf~~~l~~~tf~~~mlga~---G~Rya---~Iaf~tL-liaiytmlg~~~~~~w~~~pllll~GalwY~llsl 148 (704)
T TIGR01666 79 GK---PWLFAVGLTVSTFGFIMLGAV---GQRYA---TIAFGSL-LVALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTL 148 (704)
T ss_pred cC---cHHHHHHHHHHHHHHHHHHHh---hhhHH---HHHHHHH-HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333333333333322221 12332 2222222 11111111111111234477889999999999999
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHH
Q 040886 206 LICPVWAGQDLHNLIATNLEKLGKFLEG 233 (475)
Q Consensus 206 ~i~P~~a~~~L~~~l~~~l~~la~~l~~ 233 (475)
+.|+.+...-+++.+++.+..+|++++.
T Consensus 149 ~~~~l~p~rp~q~~LA~~y~~La~yL~a 176 (704)
T TIGR01666 149 IVHLFFPNRPVQENLAKAFCQLAEYLET 176 (704)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.61 E-value=2.9e-05 Score=87.31 Aligned_cols=290 Identities=12% Similarity=0.167 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhh-cccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040886 47 RRITHSIKVGLALTMVSIFYY-YQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLS 125 (475)
Q Consensus 47 ~~~~falK~glA~~La~ll~~-~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~ 125 (475)
..+.+++|+.+|+..+.++.+ .... ..++=+.+.++...-.+....+..=+++++-|++..+++.+...+. +
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~~g~~-----~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll--~ 78 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWWFGLL-----FLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL--F 78 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCc-----cHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 467899999999987755432 1110 1233344445545555556666666777777777777776665443 2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhh---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 040886 126 GEIGEPILLGFFVFIQAAASTFIRFFPTIKARYD---YGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACII 202 (475)
Q Consensus 126 g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~---Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~l 202 (475)
++ |+++.+.+++.+++++.+.-+ -+||. +| .+.+..|+++. ..... ..+.--+.+++|.++-.+
T Consensus 79 ~~---p~~~~~~l~~~tf~~~mlga~---G~r~~~I~f~-~L~~aiytml~---~~~~~---~w~~~pllll~GalwY~l 145 (701)
T TIGR01667 79 PK---PWLFPFLLTLLTFGFILLGAL---GQRYATIAFA-SLLAAIYTMLG---AGEVP---VWFIEPLLILAGTLWYGL 145 (701)
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHh---hhhHHhHHHH-HHHHHHHHHcC---ccccc---HHHHHHHHHHHHHHHHHH
Confidence 32 333333333333333332222 22343 22 12222222232 11212 122355668889999999
Q ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcchhHHHHHH---HHHhcccch-HHHHHhHhhh
Q 040886 203 ISILICPVWAGQDLHNLIATNLEKLGKFLEGFGNEYFKTLEDGESSNKDEKSFMQEY---KSALNSKSS-EESLANFARW 278 (475)
Q Consensus 203 Vs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~-~esL~~~a~~ 278 (475)
++.+.+..|...-+++.+++.+..+|++++. -..+++..+.. +.++...+.. .++.+..+. .+++....+
T Consensus 146 ~sll~~~l~p~rp~q~~La~~y~~La~yL~a-Ka~lf~p~~~~----~~~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~- 219 (701)
T TIGR01667 146 LTLIWFLLFPNQPLQESLSRLYRELAEYLEA-KSSLFDPDQHT----DPEKALLPLAVRNGKVVDALNQCKQQLLMRLR- 219 (701)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCC----ChhHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999864 22344322111 1111111111 111111111 123322111
Q ss_pred CCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 040886 279 EPGHGRFQFRHPWQRYLKIGNLTRQCAYRIDALNGYLNTEIQAAPEIKSKIQEA-----CTEMSLESGRALKELTLAIKK 353 (475)
Q Consensus 279 Ep~~g~~~~r~P~~~y~~i~~~lr~~~~~l~aL~~~l~s~~q~p~~~r~~l~~~-----~~~l~~~~~~~L~~La~sl~~ 353 (475)
+.. +.+ ..+++ ++ ..+....+|-.+.+...-.+++++.+.+. ++++-...++.+++++.++..
T Consensus 220 ----~~~--~~~--~~~rl---l~-~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~ 287 (701)
T TIGR01667 220 ----GNR--TDP--LTKRM---LR-YYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILL 287 (701)
T ss_pred ----CCC--CCc--hHHHH---HH-HHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 110 111 11222 11 11222333333333333445677776655 888889999999999999998
Q ss_pred ccCCCCCCccccHHHHHHHHHHHHHHH
Q 040886 354 TSQQPITSADTHIKNAKSAAKNLNTLL 380 (475)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~a~~~L~~~l 380 (475)
.+ |. . |.++.+.+.++++..+
T Consensus 288 ~~--~~-~---~~~~~~~~~~~l~~sl 308 (701)
T TIGR01667 288 RQ--PY-Y---HRLRTERALEKQIAAL 308 (701)
T ss_pred CC--CC-C---CCchHHHHHHHHHHHH
Confidence 66 32 1 2344666666666655
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.67 E-value=0.043 Score=61.39 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhh-----hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 48 RITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMT-----VVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLA 122 (475)
Q Consensus 48 ~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviT-----vvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~ 122 (475)
...-++|+++++.+++++-.... | ..|.-+++. +++...|+--....+. +.||++|..+|.++.++.
T Consensus 352 A~~~glRa~~ai~~~~~fWI~Tg----W-~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~f---l~Gtl~a~~~a~l~~f~v 423 (652)
T PRK10631 352 AMINGWRTTLATALGTLFWLWTG----W-TSGSGAMVMIAVVTSLAMRLPNPRMVAIDF---LYGTLAALPLGALYFMVI 423 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc----C-chHHHHHHHHHHHHHHHhCCCChHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44556788888877766543322 1 123333332 3333456654444443 489999988888776432
Q ss_pred hhcCCCc-hhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Q 040886 123 SLSGEIG-EPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACI 201 (475)
Q Consensus 123 ~~~g~~~-~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~ 201 (475)
+ ++.. ...++++.+..+.++ ....+ ++..++..-+.+.++..+.......--+...+.--+..++|+++|.
T Consensus 424 -L-P~i~~~f~lL~laLap~~~~---~g~~~---~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~ 495 (652)
T PRK10631 424 -I-PNTQQSMLLLCISLGVLGFF---IGIEV---QKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLAL 495 (652)
T ss_pred -H-hcccccHHHHHHHHHHHHHH---HHHHh---cccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 2 2211 222333322222111 11111 1224443333344433333332222225567778889999999999
Q ss_pred HHHhhcccccchhhHHHHH
Q 040886 202 IISILICPVWAGQDLHNLI 220 (475)
Q Consensus 202 lVs~~i~P~~a~~~L~~~l 220 (475)
++..++.|.......++.+
T Consensus 496 l~f~lirp~~~~r~~rrL~ 514 (652)
T PRK10631 496 IVILLVRDNSRDRTGRVLL 514 (652)
T ss_pred HHHHHhCCCCHHHHHHHHH
Confidence 9998888885555444433
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=94.26 E-value=1.3 Score=40.01 Aligned_cols=137 Identities=14% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchh
Q 040886 52 SIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIGEP 131 (475)
Q Consensus 52 alK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~~p 131 (475)
++|.+.+.+++..+.+.-.+ ..++-+.+-.++++.+.---+..+..+=++.+++-+..++.+. ...++ .|
T Consensus 2 ~LRia~g~~l~l~~~~~~~~-----~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~---~ll~~--~P 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGW-----PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLS---GLLQD--YP 71 (140)
T ss_pred eeehhHHHHHHHHHHHHHCC-----CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHhc--CC
Confidence 35565555555444332111 2345666666666554444445555555566666666665554 33333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040886 132 ILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVS-GFRDDEILELAHKRLSTVIIGGSACIIISIL 206 (475)
Q Consensus 132 ~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~-~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~ 206 (475)
....+.+++. -+.+++...+++.+-...+..+...++..- .++. +.+..+......|++++.+++.+
T Consensus 72 ~~~~l~v~l~----~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~~~~----~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLL----FFWSFYRMSRGPKFLFGTMLLVGLSIIPVFASYNT----ADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHH----HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHh
Confidence 4433444442 234445444433332223333333333332 3332 35667777777777777777643
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=93.45 E-value=17 Score=41.88 Aligned_cols=121 Identities=13% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchH
Q 040886 102 LNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDE 181 (475)
Q Consensus 102 ~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~ 181 (475)
+-.+-|.-+|+..|+++..+..+.+ ...++.+++..|. |.++..++-+- |.. ...-++++..++.++.....+
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l~~-~~~~~~~~~~af~-GLlaG~fk~~g----K~g-~~~g~~l~~~il~~y~~~~~~ 261 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGLAN-NANLYQIGVFGFA-GLLGGIFKELG----KIG-TGIGYLVGFLILAFYTQGSVA 261 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHhcC-ccHHHHHHHHHHH-HHHHHhhccCC----cce-eeHHHHHHHHHHHHHhccchh
Confidence 3344566666666666655544432 2356655554433 44444443221 122 123334445555555433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccch---------------------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 182 ILELAHKRLSTVIIGGSACIIISILICPVWAG---------------------QDLHNLIATNLEKLGKFLEGFGNEY 238 (475)
Q Consensus 182 ~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~---------------------~~L~~~l~~~l~~la~~l~~~~~~y 238 (475)
.. .. +.++++++++-++ +|.+.. +++++.+...++..++.++.+.+.+
T Consensus 262 ~~-~~---~~e~~ia~~lFll-----~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 262 FS-LA---LYEALIATLLFLL-----IPNKIYKKLERYLDGERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred HH-HH---HHHHHHHHHHHHH-----hhHHHHHHHHhhCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 5566666655433 342211 2256667777788887777655544
No 23
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=81.63 E-value=6.6 Score=31.27 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 040886 191 STVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFG 235 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~ 235 (475)
..+++|.+++.++.+++-| ..+.++|+.+....+++.+.++...
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~~ 46 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDLY 46 (74)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988887 6788999999888888777665444
No 24
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=76.06 E-value=1.1e+02 Score=32.30 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHhhCCCCc-hhHHHHHHHHH-HHHHHHHHhhcccccccccCcchHhhhhhhhhccc-chhHHHHHHHHHHHHHHHHH
Q 040886 36 NKVIKLGKDDP-RRITHSIKVGL-ALTMVSIFYYYQPLYDNFGVSAMWAVMTVVVVFEF-SVGATLGKGLNRGLATLVAG 112 (475)
Q Consensus 36 ~~~~~~~~~d~-~~~~falK~gl-A~~La~ll~~~~p~~~~~~~~~~WAviTvvvV~qp-tvGatl~kg~~RilGTliGa 112 (475)
..++..+..|+ +....+++.|+ |..+...+|..-- | .++.....+. +. +-+..+....++.+|+..+.
T Consensus 201 ~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~-~-------lGa~~~~~~~-~~~~~~~~l~~~a~~~~G~~G~~ 271 (378)
T TIGR00796 201 NAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLF-Y-------LGATSAAAAG-DAVNGAQILSAYSQHLFGSLGSF 271 (378)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HhcCcHhhhc-ccCCcHHHHHHHHHHHcchhHHH
Confidence 34455555555 56678999998 6555544442111 0 1121111111 11 46777888899999999888
Q ss_pred HHHHHHH
Q 040886 113 GLGVGAH 119 (475)
Q Consensus 113 ~lg~~~~ 119 (475)
++++++.
T Consensus 272 ll~i~v~ 278 (378)
T TIGR00796 272 LLGLIIT 278 (378)
T ss_pred HHHHHHH
Confidence 8888775
No 25
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=72.76 E-value=64 Score=33.83 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHH-HHHhhhh----cchhhHHHHHHHHHHHHHHhc
Q 040886 101 GLNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTF-IRFFPTI----KARYDYGLLIFILTFSLISVS 175 (475)
Q Consensus 101 g~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~-~~~~~~~----k~~~~Y~~~i~~lT~~lV~l~ 175 (475)
+..-+++|+.|+.+++....+. .. + +.+..+...| .|.++.+ ..+...|..++.+.|+++++.
T Consensus 46 ~ar~lLstia~smitv~~~~fS--------i~---~-val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~ 113 (371)
T PF10011_consen 46 GARTLLSTIAGSMITVTGFVFS--------IT---L-VALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLI 113 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HH---H-HHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 5566789999998887664321 01 1 1111111111 1222221 123455777888888999988
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcc
Q 040886 176 GFRDDEILELAHKRLSTVIIGGSACIIISILICPVWAGQDLHN-LIATNLEKLGKFLEGFGNEYFKT 241 (475)
Q Consensus 176 ~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~-~l~~~l~~la~~l~~~~~~y~~~ 241 (475)
..+.+..-+ ..|+. +.++++++++. ++.+-.|-+.-.+. ++.+.++.+.+......+++...
T Consensus 114 ~i~~~~~~~--~p~~~-~~~a~~l~i~~-v~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~~~~~~ 176 (371)
T PF10011_consen 114 AIRSGDYGS--VPRLS-VFIALALAILS-VVLLIYFIHHIARSIQVSNIIARIEEDARKAIDRLYPE 176 (371)
T ss_pred Hcccccccc--CcchH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcC
Confidence 776533111 55565 66666665433 33344444332221 23445556665555555555443
No 26
>PRK11677 hypothetical protein; Provisional
Probab=67.79 E-value=25 Score=31.69 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 191 STVIIGGSACIIISILICPV-WAGQDLHNLIATNLEKLGKFLEGFGNEYF 239 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~-~a~~~L~~~l~~~l~~la~~l~~~~~~y~ 239 (475)
+..+||+++++++..+.-|. ....+|.+.+.+.-..+.++=+.+.++|.
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999987776 35566777776666666655455554444
No 27
>COG4129 Predicted membrane protein [Function unknown]
Probab=63.28 E-value=40 Score=34.95 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040886 98 LGKGLNRGLATLVAGGLGVGAHH 120 (475)
Q Consensus 98 l~kg~~RilGTliGa~lg~~~~~ 120 (475)
..|..+|.+=|.+|+.+++.+..
T Consensus 6 ~~~ig~RtlKt~ia~~La~~ia~ 28 (332)
T COG4129 6 MRKIGARTLKTGLAAGLALLIAH 28 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999987754
No 28
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.17 E-value=65 Score=28.01 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 040886 101 GLNRGLATLVAGGLGVGAHHLA 122 (475)
Q Consensus 101 g~~RilGTliGa~lg~~~~~i~ 122 (475)
+..=+-|+++|+++|+++=.++
T Consensus 49 ssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455689999999999886443
No 29
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=53.72 E-value=1.7e+02 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 040886 106 LATLVAGGLGVGAHHLASL 124 (475)
Q Consensus 106 lGTliGa~lg~~~~~i~~~ 124 (475)
+|+..|++.|.+-..+.+.
T Consensus 49 ~Gp~~G~ivg~ig~~l~dl 67 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDL 67 (169)
T ss_pred HChHHHHHHHHHHHHHHHH
Confidence 5666666666555444444
No 30
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=53.47 E-value=2.4e+02 Score=27.99 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=41.5
Q ss_pred HHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCc--hHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Q 040886 147 FIRFFPTIKARYDYGLLIFILTFSLISVSGFRD--DEI-LELAHKRLSTVIIGGSACIIISILICPVWAGQDLHNLIATN 223 (475)
Q Consensus 147 ~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~--~~~-~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~ 223 (475)
..|++| |++-.|+.++.+.++....+..... ..+ .+....=+..+++.+++.+.|+.-..|.. .++.++-+...
T Consensus 57 ~~k~lP--rk~~~~~~l~gg~~~~~y~l~~~~~nl~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~-~~rs~~~v~W~ 133 (249)
T PF10225_consen 57 LSKLLP--RKSMFYAVLYGGWSFGLYFLQQLWENLQSILEEYRIYVLGYVLVVGLVSFAVCYRYGPPV-DPRSRNFVKWA 133 (249)
T ss_pred HHHHcc--CcchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cHhHHHHHHHH
Confidence 445666 3344466666555544433322111 122 22233334445555556666666555654 35566666666
Q ss_pred HHHHHHHH
Q 040886 224 LEKLGKFL 231 (475)
Q Consensus 224 l~~la~~l 231 (475)
+.-++-.+
T Consensus 134 Lqligl~l 141 (249)
T PF10225_consen 134 LQLIGLVL 141 (249)
T ss_pred HHHHHHHH
Confidence 66666544
No 31
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=51.85 E-value=1.7e+02 Score=25.80 Aligned_cols=80 Identities=21% Similarity=0.533 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCc-hHHHHH-----------HHHHHHHHHHHHHHH
Q 040886 133 LLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRD-DEILEL-----------AHKRLSTVIIGGSAC 200 (475)
Q Consensus 133 ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~-~~~~~~-----------A~~R~~~I~iGi~ia 200 (475)
+.|+++.+++-.. .|+..+.+-|.|-.....+..+.|++-.++. +.+|+. .-.|+.-|+-|+.
T Consensus 53 vcgisvvvfgtll---tfiesmeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggva-- 127 (175)
T PF13295_consen 53 VCGISVVVFGTLL---TFIESMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVA-- 127 (175)
T ss_pred hhchhhhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccch--
Confidence 4555555555443 4444555557776666666666677666654 333322 2346665555543
Q ss_pred HHHHhhcccccchhhHH
Q 040886 201 IIISILICPVWAGQDLH 217 (475)
Q Consensus 201 ~lVs~~i~P~~a~~~L~ 217 (475)
.+.+..++..|..+-..
T Consensus 128 vvltfilcsywpeqffa 144 (175)
T PF13295_consen 128 VVLTFILCSYWPEQFFA 144 (175)
T ss_pred heeehhhhhcChHHHHH
Confidence 34455555666554443
No 32
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=50.24 E-value=2.2e+02 Score=31.08 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=44.4
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHhhcccccccccCcchHhhhhhhh-----------------hcccchhHHHHHHH
Q 040886 40 KLGKDDPRRITHSIKVGLALTMVSIFYYYQPLYDNFGVSAMWAVMTVVV-----------------VFEFSVGATLGKGL 102 (475)
Q Consensus 40 ~~~~~d~~~~~falK~glA~~La~ll~~~~p~~~~~~~~~~WAviTvvv-----------------V~qptvGatl~kg~ 102 (475)
++||..| +-+-.++-.++.+.+.|..|.+ ..+....||.+|.++ +|.++..+-.+-.-
T Consensus 78 r~GrfRP----~lL~g~ip~~i~~~l~F~~p~~-~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s 152 (467)
T COG2211 78 RWGRFRP----WLLWGAIPFAIVAVLLFITPDF-SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTS 152 (467)
T ss_pred ccccccH----HHHHHhHHHHHHHHHHHcCCCc-ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHH
Confidence 4454444 3333344444555445555531 112344566666433 23455666666777
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhcCCC
Q 040886 103 NRGLATLVAGGLGVGAH-HLASLSGEI 128 (475)
Q Consensus 103 ~RilGTliGa~lg~~~~-~i~~~~g~~ 128 (475)
.|..++.+|..+...+. .+...+|..
T Consensus 153 ~R~~~~~~g~~l~~~~~~plv~~~g~~ 179 (467)
T COG2211 153 WRMVFASLGGLLVAVLFPPLVKLFGGG 179 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78888888865554443 555555543
No 33
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=48.94 E-value=70 Score=28.06 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 040886 190 LSTVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEGFG 235 (475)
Q Consensus 190 ~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~~~ 235 (475)
+.-+++|++++.++..++-| ..+.++|+.+....+.+-...+...
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~~~~ae~~~ 52 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDALFELAEDKG 52 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678999999988877666 5677888666665555554444433
No 34
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.92 E-value=2.1e+02 Score=25.54 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=26.8
Q ss_pred hHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 80 MWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAH 119 (475)
Q Consensus 80 ~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~ 119 (475)
..+.++++.++......... ..+|++=|++|...|+++-
T Consensus 100 ~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN 138 (141)
T PF06081_consen 100 IVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVN 138 (141)
T ss_pred hHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 35656665555443333333 9999999999999998774
No 35
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=46.45 E-value=51 Score=23.14 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040886 395 PVATVASLLIDVVNCTEKVAESAYELASA 423 (475)
Q Consensus 395 ~~at~asllieiv~~l~~l~~~v~eL~~~ 423 (475)
|.+.-+.||+.+=.+++.+.+++++|...
T Consensus 9 Pi~va~yLL~R~E~kld~L~~~i~~L~~~ 37 (38)
T PF12841_consen 9 PIAVAIYLLVRIEKKLDELTESINELSEA 37 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566779999999999999999999753
No 36
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=46.44 E-value=3.9e+02 Score=29.00 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=59.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHHHHHHHHHHHHHHhhhh-c-------chhhHH
Q 040886 91 EFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSG-EIGEPILLGFFVFIQAAASTFIRFFPTI-K-------ARYDYG 161 (475)
Q Consensus 91 qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g-~~~~p~ll~l~vfl~~~~~~~~~~~~~~-k-------~~~~Y~ 161 (475)
+-+.|-.-.+-.--+.|++.|++.|.+.=.+...++ ....|- ..+..++.|.+.++.|-.-.- | ....|.
T Consensus 94 KIsFgfIpi~l~G~LFGP~~G~l~g~lsDlLg~if~~G~fFpG-FTLsA~L~GlIyGl~r~~l~~~~~~~~~~~~~~~y~ 172 (477)
T PRK12821 94 RVTLELILVKISGLLFGPIIGIFSAATIDFLTVIFSGGVFNYG-YVLGAILTGMIAGILREVLISTKYLKNRNLSDFAYL 172 (477)
T ss_pred EEehhhHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHH
Confidence 344565666666677899999998887654442222 112222 234555666666666543211 1 023344
Q ss_pred HH---H----HHHHHHHH-HhcC----CC-c----------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 162 LL---I----FILTFSLI-SVSG----FR-D----------DEILELAHKRLSTVIIGGSACIIISI 205 (475)
Q Consensus 162 ~~---i----~~lT~~lV-~l~~----~~-~----------~~~~~~A~~R~~~I~iGi~ia~lVs~ 205 (475)
.. + +++|--.+ .++. .+ + +..+.+...+...|++|..++.++.+
T Consensus 173 ~~s~~~~~a~fl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~is~~~~~~i~~~f~~~~i~~~ 239 (477)
T PRK12821 173 VLSVGMVIASFLLTQFFVISVTTNLPEIRINGGFDLSFNAVSQTFKISLVVYTWIILYFGIGIIIFM 239 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccCCCeEEEeccCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33 2 22221111 2220 00 0 12478888999999888877655543
No 37
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=44.48 E-value=18 Score=36.99 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040886 102 LNRGLATLVAGGLGVGAHHL 121 (475)
Q Consensus 102 ~~RilGTliGa~lg~~~~~i 121 (475)
+=|+.||++||++|++.+.+
T Consensus 344 ~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 45899999999999988644
No 38
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.68 E-value=1.1e+02 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhccccc-chhhHHHHHHHHHHHHHHH
Q 040886 191 STVIIGGSACIIISILICPVW-AGQDLHNLIATNLEKLGKF 230 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~~-a~~~L~~~l~~~l~~la~~ 230 (475)
+..+||+++++++..+..+.. ....|.+.+.+.-..+.++
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y 44 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY 44 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 456788888888888777663 2345666666555555544
No 39
>COG5547 Small integral membrane protein [Function unknown]
Probab=38.09 E-value=1.4e+02 Score=22.91 Aligned_cols=24 Identities=17% Similarity=-0.076 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 98 LGKGLNRGLATLVAGGLGVGAHHL 121 (475)
Q Consensus 98 l~kg~~RilGTliGa~lg~~~~~i 121 (475)
+.|.-+|++|-++|.++|+++..+
T Consensus 4 lk~fkypIIgglvglliAili~t~ 27 (62)
T COG5547 4 LKKFKYPIIGGLVGLLIAILILTF 27 (62)
T ss_pred HHHhccchHHHHHHHHHHHHHHHH
Confidence 567789999999999999888643
No 40
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=36.72 E-value=3.3e+02 Score=24.96 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccCCchhhhhHHHHHHHHHHHH
Q 040886 328 KIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDCDLLTVVPVATVASLLIDVV 407 (475)
Q Consensus 328 ~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~at~asllieiv 407 (475)
....++..|...+.+.+...-.++.+.. + .....+.+..+...++...+...-..... +...-..-...+++++
T Consensus 113 ~~~~el~~m~~~v~~~l~~a~~al~~~d--~--~~~~~i~~~e~~id~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~i~ 186 (212)
T TIGR02135 113 KHLEELEKMGKLALKMLKDALDAFLNKD--A--ELARQVAEMDERVDELYRQIFRELVTYMK--ENPENIEAALDVLLIA 186 (212)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCC--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCcccHHHHHHHHHHH
Confidence 3456677888888888888878877543 1 11112334444445444443321000000 0011112445566888
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 040886 408 NCTEKVAESAYELASAANF 426 (475)
Q Consensus 408 ~~l~~l~~~v~eL~~~a~F 426 (475)
.++|++.|....++....|
T Consensus 187 ~~lERigD~~~nIae~~~~ 205 (212)
T TIGR02135 187 RYLERIGDHATNIAERVIY 205 (212)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877777755443
No 41
>COG4258 Predicted exporter [General function prediction only]
Probab=35.50 E-value=4.1e+02 Score=30.08 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhh-cch---------hhHHHH
Q 040886 95 GATLGKGLNRGLATLVAGGLGVGAHHL-ASLSGEIGEPILLGFFVFIQAAASTFIRFFPTI-KAR---------YDYGLL 163 (475)
Q Consensus 95 Gatl~kg~~RilGTliGa~lg~~~~~i-~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~-k~~---------~~Y~~~ 163 (475)
++...+|+.|.+=.++=.++++++..- ....|.+.|.|=+-..+.+.+....|.-||..- .++ ..-+..
T Consensus 662 la~a~rgwRrglrvllP~v~a~~~~~A~~a~aGvplnLfhllal~LvlgvG~nYalFfs~~~~~~ae~lttl~alala~l 741 (788)
T COG4258 662 LAVARRGWRRGLRVLLPSVLALGCGLAVLAMAGVPLNLFHLLALVLVLGVGINYALFFSNAGDPRAEPLTTLLALALAML 741 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHcccchhhhhhcccCCCCchHHHHHHHHHHHH
Confidence 455566777766666666666555421 123466556542222333445555666665431 000 011233
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 040886 164 IFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILICPVWA 212 (475)
Q Consensus 164 i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a 212 (475)
...+||.+..++....-+.| =+++.-|++++++.+-+.-|...
T Consensus 742 tTlltfgLLa~Sa~pvLssf------G~tlasGiila~vlApL~mp~~g 784 (788)
T COG4258 742 TTLLTFGLLAFSATPVLSSF------GITLASGIILAFVLAPLAMPDKG 784 (788)
T ss_pred HHHHHHHHHHhcccHHHHHh------hHHHHHHHHHHHHHHHhcCCCcc
Confidence 44556666666654432222 24567799999999998888743
No 42
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=35.05 E-value=4.7e+02 Score=26.05 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHH----HHHHHHHHHHHHHH
Q 040886 180 DEILELAHKRLSTVIIGGSACIIISILICPVWAGQDLH----NLIATNLEKLGKFL 231 (475)
Q Consensus 180 ~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~----~~l~~~l~~la~~l 231 (475)
.+.+..+..=+..-+.-.++++++. .++|.+..++.- ..+++-+..-++++
T Consensus 69 ~~~~~~~~l~~~Gglwy~~lsl~~~-~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYLLLSLLWW-PLRPYRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888888888888888887 479988766543 34444444444444
No 43
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=34.83 E-value=2.7e+02 Score=28.83 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhcC
Q 040886 100 KGLNRGLATLVAGGLGVGAH-HLASLSG 126 (475)
Q Consensus 100 kg~~RilGTliGa~lg~~~~-~i~~~~g 126 (475)
+-+-|++=+++|+.+|+... .+....|
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~~ 30 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADLG 30 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhcC
Confidence 44567888999999999887 4433334
No 44
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=34.50 E-value=4.3e+02 Score=28.46 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040886 163 LIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILICP 209 (475)
Q Consensus 163 ~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P 209 (475)
.+++.|..++.+. +.+.-...|...+++|++++.++..+.++
T Consensus 174 ~~a~~~l~~il~~-----~~~~~g~~~~~svLiGiv~G~v~a~~~~g 215 (433)
T PRK11412 174 GLSVAVMCLVLAM-----IIFLPQRIARYSLLVGTIVGWILWAFCFP 215 (433)
T ss_pred HHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555565544432 33556688999999999999998654333
No 45
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=32.89 E-value=1.1e+02 Score=26.04 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040886 166 ILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILICPV 210 (475)
Q Consensus 166 ~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~ 210 (475)
.+|..++. ....++.++.+.+|+.-+++|++++.+... +.|.
T Consensus 18 ~it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 18 PITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 34444444 224467789999999999999999998884 4554
No 46
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=32.73 E-value=1.7e+02 Score=31.19 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040886 163 LIFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILI 207 (475)
Q Consensus 163 ~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i 207 (475)
+-+++|..+|. ++..+..+--.+.|.+.+++|+++|+.++.+-
T Consensus 42 ~WavlTVvvvf--e~tvGatl~KG~nR~lGTl~aG~La~~~~~la 84 (406)
T PF11744_consen 42 MWAVLTVVVVF--EPTVGATLSKGLNRGLGTLLAGILAFGVSWLA 84 (406)
T ss_pred hHHHhhhHhhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554 55566678889999999999999998887543
No 47
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=32.23 E-value=6.7e+02 Score=27.01 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred HHHHHhhCCCCc-hhHHHHHHHHHHHHHH-HHHhhcccccccccCcchHhhhhhh--hhcccchhHHHHHHHHHHHHHHH
Q 040886 35 VNKVIKLGKDDP-RRITHSIKVGLALTMV-SIFYYYQPLYDNFGVSAMWAVMTVV--VVFEFSVGATLGKGLNRGLATLV 110 (475)
Q Consensus 35 ~~~~~~~~~~d~-~~~~falK~glA~~La-~ll~~~~p~~~~~~~~~~WAviTvv--vV~qptvGatl~kg~~RilGTli 110 (475)
...+++.|-.|+ ...+..+|.|+-..+. ++.|..- .|...+.- +--.-+-+.-+....++.+|+.-
T Consensus 206 i~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL----------~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G 275 (427)
T PF05525_consen 206 INAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGL----------AYLGATSSGSFPDDINGAELLSQIANHLFGSAG 275 (427)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHccCCcccccCCCCHHHHHHHHHHHHcChhH
Confidence 345667777655 4566777776544433 3333211 11111111 12234567788888999999988
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCchHHHHH
Q 040886 111 AGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDDEILEL 185 (475)
Q Consensus 111 Ga~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~~~~~~ 185 (475)
..++|+++...+ +..++-+.++++.|+. .+-+|.+|-..+.+.|..-..++...-+++..+
T Consensus 276 ~~ll~iiv~lAC-----------LTTaIGL~~a~a~yf~---~~~~kisY~~~v~i~~i~S~~ian~Gl~~Ii~~ 336 (427)
T PF05525_consen 276 QILLGIIVFLAC-----------LTTAIGLISACAEYFS---ELFPKISYKVWVIIFTIFSFIIANLGLDQIIKI 336 (427)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH---HHhcccChHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 888887775322 1234444444544433 221245665455444433233333333444433
No 48
>PRK11660 putative transporter; Provisional
Probab=29.48 E-value=3.5e+02 Score=30.02 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 040886 191 STVIIGGSACIIISILIC 208 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~ 208 (475)
..+..|++++++++.+.+
T Consensus 424 ~~~~~gi~~Gi~~s~~~~ 441 (568)
T PRK11660 424 FDMVIAISVGIVLASLLF 441 (568)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344556666666665543
No 49
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=28.64 E-value=8e+02 Score=26.76 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=67.3
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhh-hhcchhhHH--HH
Q 040886 87 VVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFP-TIKARYDYG--LL 163 (475)
Q Consensus 87 vvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~-~~k~~~~Y~--~~ 163 (475)
+++-+|+.| ++..-.++.+|...|=+.|..-|.. .++ +.+.=..++..|++++. .+ +.+-.+ ..
T Consensus 69 m~~~~p~~g-SF~~~a~~~lG~~Agf~tgW~YW~~---------wv~--v~~ae~tAi~~y~~~WfP~v-P~Wv~al~~~ 135 (462)
T COG1113 69 MLVANPVSG-SFSDYARKYLGPWAGFLTGWTYWFF---------WVL--VGIAELTAIGIYLQFWFPDV-PQWVFALAAV 135 (462)
T ss_pred HHHhCCCCC-cHHHHHHHHhcchHHHHHHHHHHHH---------HHH--HHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 455678888 6777777788887777777665521 121 12222345667777763 44 444433 33
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 040886 164 IFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIIISILICPVWA 212 (475)
Q Consensus 164 i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a 212 (475)
+.+...+++.+-.+..-+.| +|+-.+..|+.=++++...-..-+|...
T Consensus 136 ~l~~~~NL~sVk~FGE~EfW-fAlIKV~aIi~~Iv~G~~ll~~g~~~~~ 183 (462)
T COG1113 136 VLLLAVNLISVKVFGELEFW-FALIKVAAIIAFIVVGIVLLFGGFGGGG 183 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 34445666666666655544 7888888887766666665555566554
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.54 E-value=5.8e+02 Score=25.11 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=10.0
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 040886 44 DDPRRITHSIKVGLALTMV 62 (475)
Q Consensus 44 ~d~~~~~falK~glA~~La 62 (475)
++.+...-.+.+|+..++.
T Consensus 141 E~y~k~~k~~~~gi~aml~ 159 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLF 159 (230)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3444445556666655543
No 51
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=28.37 E-value=3.1e+02 Score=32.09 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 040886 192 TVIIGGSACIIISILICPV 210 (475)
Q Consensus 192 ~I~iGi~ia~lVs~~i~P~ 210 (475)
.+.+|+++|++++.++.|.
T Consensus 836 ~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 836 LLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777774
No 52
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.87 E-value=1.6e+02 Score=27.74 Aligned_cols=17 Identities=0% Similarity=-0.246 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040886 103 NRGLATLVAGGLGVGAH 119 (475)
Q Consensus 103 ~RilGTliGa~lg~~~~ 119 (475)
..++++++|..++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (199)
T PF10112_consen 6 RFIFRWILGVLIAAITF 22 (199)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 53
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=27.53 E-value=2e+02 Score=26.41 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCccc---CCchhhhhHHHHHHHHH
Q 040886 328 KIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWED---CDLLTVVPVATVASLLI 404 (475)
Q Consensus 328 ~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~---~~~~~~~~~at~aslli 404 (475)
.++.+..+|+..+...|..+-.++.+.. + ..-..+.+..+...++...+...-... ..+.+ .-..-...++
T Consensus 9 ~~~~el~~m~~~~~~ml~~~~~~~~~~d--~--~~~~~i~~~e~~id~l~~~i~~~~l~~i~~~~~~~--~~~~~~~~~~ 82 (212)
T TIGR02135 9 ELREELLEMGGLVEEQLEDAVRALTEKD--R--ELARKVIEDDDQINALEVKIEEKCLRLIALQQPVA--KDLRLIISII 82 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--H--HHHHHHHHChHHHHHHHHHHHHHHHHHHHHhCccH--hhHHHHHHHH
Confidence 3456677777778877777777776433 1 011112333344444444432110000 00100 1123344456
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 040886 405 DVVNCTEKVAESAYELASAANFES 428 (475)
Q Consensus 405 eiv~~l~~l~~~v~eL~~~a~F~~ 428 (475)
.++.++|++.|....++..+.+..
T Consensus 83 ~i~~~lErigD~~~~ia~~~~~~~ 106 (212)
T TIGR02135 83 KISSDLERIGDYAVNIAKRALRLK 106 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998888765
No 54
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.29 E-value=1.1e+03 Score=27.52 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Q 040886 193 VIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFLEG 233 (475)
Q Consensus 193 I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l~~ 233 (475)
+++|++++++.|-.+- ..-++..+.+.++++++..++..
T Consensus 153 il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~ 191 (806)
T PF05478_consen 153 ILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLND 191 (806)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHh
Confidence 4668888877775432 22344556667777777777654
No 55
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=25.66 E-value=3e+02 Score=30.49 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCc--ccCCchhhhhHHHHHHHHHH
Q 040886 328 KIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIW--EDCDLLTVVPVATVASLLID 405 (475)
Q Consensus 328 ~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~--~~~~~~~~~~~at~asllie 405 (475)
....|.-++++.+++.|....+.+++ . +.. ...+.+.++++++++.+++.+.. ....+.|.. .--.-.+++
T Consensus 335 ~A~rEvl~~~d~ie~ml~~~~~~~~~-~--~~~--~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~e--s~r~~~iid 407 (533)
T COG1283 335 NAAREVLRLGDSIEQMLERLYEYIEG-D--AKK--VKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEE--SRRWAEIID 407 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-c--hHH--HHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHH--HHHHHHHHH
Confidence 34567778899999999999999986 5 322 23367788888888888754211 111222222 123456778
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 040886 406 VVNCTEKVAESAYELASAAN 425 (475)
Q Consensus 406 iv~~l~~l~~~v~eL~~~a~ 425 (475)
...++|++-|-+++|....+
T Consensus 408 ~a~~lE~IgDiie~l~~~~~ 427 (533)
T COG1283 408 AAINLEHIGDIIERLLELAD 427 (533)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 88999999888888776544
No 56
>COG2733 Predicted membrane protein [Function unknown]
Probab=25.40 E-value=30 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040886 102 LNRGLATLVAGGLGVGAHHLA 122 (475)
Q Consensus 102 ~~RilGTliGa~lg~~~~~i~ 122 (475)
+-|+=||++||++|++++.|.
T Consensus 391 ~IRiNGtvVGG~~Gllly~I~ 411 (415)
T COG2733 391 FIRINGTVVGGIAGLLLYAIS 411 (415)
T ss_pred EEeEcCchHHHHHHHHHHHHH
Confidence 347889999999999997654
No 57
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.32 E-value=72 Score=25.17 Aligned_cols=17 Identities=6% Similarity=-0.195 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040886 104 RGLATLVAGGLGVGAHH 120 (475)
Q Consensus 104 RilGTliGa~lg~~~~~ 120 (475)
-++||++|++++.++.+
T Consensus 52 W~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677888877766543
No 58
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=25.10 E-value=45 Score=23.84 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040886 98 LGKGLNRGLATLVAGGLGV 116 (475)
Q Consensus 98 l~kg~~RilGTliGa~lg~ 116 (475)
+.++-.|.+||++|++++-
T Consensus 17 ig~~~g~~~g~~~Ga~~Ga 35 (42)
T PF05433_consen 17 IGGGNGRTLGAVAGAVAGA 35 (42)
T ss_pred hcCCCCcHHHHHHHHHHHH
Confidence 3334444445555444443
No 59
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=24.75 E-value=76 Score=31.16 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccc
Q 040886 408 NCTEKVAESAYELASAANFESIDSAIST 435 (475)
Q Consensus 408 ~~l~~l~~~v~eL~~~a~F~~~~~~~~~ 435 (475)
.-+.+++|++++|+..|+|+--+.-.+-
T Consensus 10 sLlKkIlealkdlV~~a~fdcse~Gisl 37 (260)
T KOG1636|consen 10 SLLKKILEALKDLVNDANFDCSETGISL 37 (260)
T ss_pred HHHHHHHHHHHHHHhccCcccccCceEE
Confidence 4578999999999999999974444333
No 60
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=3.3e+02 Score=27.55 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Q 040886 180 DEILELAHKRLSTVIIGGSACIIISILICPVWAGQDLHNLIATNLEKLGKFL 231 (475)
Q Consensus 180 ~~~~~~A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l~~~l~~la~~l 231 (475)
+...+..-..+..+.+|+++|.+.-...|=++.-+.--+++.+..|+.|+.+
T Consensus 125 g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id~~~EeaA~sL 176 (274)
T COG0555 125 GSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSL 176 (274)
T ss_pred hhhhcccCceEeccHHHHHHHHHHHcchhHHHHHHHHHHhccHHHHHHHHhc
Confidence 4444556668888999999998877766666555544445555555555443
No 61
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=24.34 E-value=2.4e+02 Score=23.56 Aligned_cols=11 Identities=9% Similarity=0.274 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 040886 106 LATLVAGGLGV 116 (475)
Q Consensus 106 lGTliGa~lg~ 116 (475)
+|+++|+++++
T Consensus 27 ~~~~~~a~i~~ 37 (112)
T PF14015_consen 27 ILSVLGAVIPV 37 (112)
T ss_pred HHHHHHHHHHH
Confidence 34445555554
No 62
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=24.30 E-value=5.2e+02 Score=23.12 Aligned_cols=63 Identities=19% Similarity=0.026 Sum_probs=39.7
Q ss_pred hHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHH
Q 040886 80 MWAVMTVVVVFEFSVGATLGKGLNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAA 144 (475)
Q Consensus 80 ~WAviTvvvV~qptvGatl~kg~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~ 144 (475)
.|+..-..-..=- .|...+...+=+.+...|.+.|.+..++....+.. .+....+.+++.++.
T Consensus 22 ~W~~Figwa~yfa-~G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~ 84 (144)
T PF06496_consen 22 GWAGFIGWASYFA-AGGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFV 84 (144)
T ss_pred HHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHH
Confidence 5776654443322 27777777777888899999999888777665442 234444444554433
No 63
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.62 E-value=2.6e+02 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=15.8
Q ss_pred cchHhhhhhhhhcccchhHHHHHHHHHHH
Q 040886 78 SAMWAVMTVVVVFEFSVGATLGKGLNRGL 106 (475)
Q Consensus 78 ~~~WAviTvvvV~qptvGatl~kg~~Ril 106 (475)
-+|++.-.+++.+-..+.....|+..|.+
T Consensus 353 ~AYliAa~a~i~Li~~Y~~~vl~~~k~~~ 381 (430)
T PF06123_consen 353 LAYLIAALACIGLISLYLSSVLKSWKRGL 381 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34555555555555555555555555543
No 64
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=23.20 E-value=2.8e+02 Score=26.44 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccCCchh-hhhHHHHHHHHHHH
Q 040886 328 KIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDCDLLT-VVPVATVASLLIDV 406 (475)
Q Consensus 328 ~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~~~~at~aslliei 406 (475)
.++.++..|+..+.+.|.....++++.. . ..-..+....+.+.++...+...-.+-...-+ ...-...+..++.+
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d--~--~~~~~i~~~e~~id~l~~~I~~~l~~~l~~~~~~~~d~~~~~~~~~i 95 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQD--A--ELAKRVIEGDHKVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKT 95 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--H--HHHHHHHHChHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Confidence 3557777888888888888777776533 1 11112344455555555554321100000000 11123456677788
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 040886 407 VNCTEKVAESAYELASAAN 425 (475)
Q Consensus 407 v~~l~~l~~~v~eL~~~a~ 425 (475)
+.++|++-|-..+++..+.
T Consensus 96 ~~~lERIgD~~~nia~~~~ 114 (236)
T PRK11115 96 IADLERIGDVADKIARTAL 114 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876554
No 65
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=23.19 E-value=3.3e+02 Score=27.35 Aligned_cols=19 Identities=5% Similarity=-0.129 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040886 101 GLNRGLATLVAGGLGVGAH 119 (475)
Q Consensus 101 g~~RilGTliGa~lg~~~~ 119 (475)
-..=++|.++|++.+.++.
T Consensus 33 ~~Rll~~A~~Gal~~~~~~ 51 (293)
T PF03419_consen 33 RWRLLLGAAIGALYSLLIF 51 (293)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444678888888887765
No 66
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.12 E-value=4.4e+02 Score=31.47 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=19.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 92 FSVGATLGKGLNRGLATLVAGGLGVGAH 119 (475)
Q Consensus 92 ptvGatl~kg~~RilGTliGa~lg~~~~ 119 (475)
|..|+... -..|.+|+..|+.+|+..+
T Consensus 140 p~aGG~Y~-yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 140 VKGGGAYY-LISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCccHHHH-HHHHHhCcHHHHHHHHHHH
Confidence 34444433 3579999999999998765
No 67
>PRK09823 putative inner membrane protein; Provisional
Probab=22.60 E-value=5.9e+02 Score=23.17 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHhcCCCch
Q 040886 101 GLNRGLATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFIQAAASTFIRFFPTIKARYDYGLLIFILTFSLISVSGFRDD 180 (475)
Q Consensus 101 g~~RilGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl~~~~~~~~~~~~~~k~~~~Y~~~i~~lT~~lV~l~~~~~~ 180 (475)
++.-++|+.+|..+.++...+.+ |.+ ++.++-..+-+. -++.. ..+-|+..-+.+|=..++. ...
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~~--~~~-~~~lll~i~~i~-------plf~~--l~w~~g~~pAlLTGVa~Ac---lP~ 76 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFLP--GAK-EPLLLLVIIQVL-------PLFLL--LSWTTGAIPALLTGVAVAC---LPE 76 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhcC--CCC-CchhhhHHHHhh-------HHHHH--HHHHHhhHHHHHHHHHHHh---CcH
Confidence 45567899999998887765433 332 333221111111 01111 1355677777777544432 246
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 040886 181 EILELAHKRLSTVII-GGSACIIISILI 207 (475)
Q Consensus 181 ~~~~~A~~R~~~I~i-Gi~ia~lVs~~i 207 (475)
++++-.++|.+.-.+ |.+++.+-+..+
T Consensus 77 kiyq~~~~R~lacgi~G~vIttLy~~~~ 104 (160)
T PRK09823 77 KIYQQKIYRCLACGIGGVVITTLYCAVI 104 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 889999999886544 344555554433
No 68
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=22.35 E-value=5.2e+02 Score=28.78 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 040886 191 STVIIGGSACIIISILIC 208 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~ 208 (475)
.++..|+.++++++.+.+
T Consensus 393 ~~l~~GV~vGi~ls~~~~ 410 (554)
T COG0659 393 FDLVIGVVVGILLACLLF 410 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777766665544
No 69
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.33 E-value=3.3e+02 Score=20.23 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040886 102 LNRGLATLVAGGLGVGAH 119 (475)
Q Consensus 102 ~~RilGTliGa~lg~~~~ 119 (475)
..|++|.++|-++|+++.
T Consensus 8 ~~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLIL 25 (51)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 456777777777776664
No 70
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=22.33 E-value=5.7e+02 Score=30.07 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040886 164 IFILTFSLISVSGFRDDEILELAHKRLSTVIIGGSACIII 203 (475)
Q Consensus 164 i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~iGi~ia~lV 203 (475)
+.+-|..+..+....+...+.--..|+.+=+.|.+||++.
T Consensus 450 VglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iF 489 (876)
T KOG1172|consen 450 VGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIF 489 (876)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444344444566778888888888887653
No 71
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.86 E-value=3.8e+02 Score=20.72 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred hhhHhHHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HHHHHHHHHhh
Q 040886 22 SLPEKSKANVVEVVNKVIKLGKDDPRRITHSIKVG-LALTMVSIFYY 67 (475)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~falK~g-lA~~La~ll~~ 67 (475)
.+.+.+++.+.+-.|-+..-.++|...+....|.. +...+..++.|
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777889998888777764 44444444443
No 72
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=21.66 E-value=4.7e+02 Score=21.71 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc-ccHHHHHHHHHHHHHHHhcCCcccCCchhhhhHHHHHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSAD-THIKNAKSAAKNLNTLLKSGIWEDCDLLTVVPVATVASLLIDVV 407 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~at~asllieiv 407 (475)
...++..+.. -..+|.++-....... + ...+ ..+..+...++.++..|.....+..+ - -+..=++++.
T Consensus 9 ~~~~l~~v~~-~~~lL~emL~~~~~~~--~-~~~~~el~~eL~~~ck~~r~~i~~li~~~~d----e---e~l~~lL~~N 77 (100)
T PF03127_consen 9 RRSELEKVKN-NAKLLNEMLDNYDPGE--E-SSSDNELIQELYESCKSMRPRIQRLIEEVED----E---ELLGELLQAN 77 (100)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHTTTTT--S-THHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----C---HHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCCC--C-CccchHHHHHHHHHHHHHHHHHHHHHhhcCc----H---HHHHHHHHHH
Confidence 3344444333 3355555555444332 1 1111 23556677777777766432111111 1 1445567899
Q ss_pred HHHHHHHHHHHHHHh
Q 040886 408 NCTEKVAESAYELAS 422 (475)
Q Consensus 408 ~~l~~l~~~v~eL~~ 422 (475)
++|...++.++.+..
T Consensus 78 D~L~~~l~~Y~~l~~ 92 (100)
T PF03127_consen 78 DELNQALERYDRLVK 92 (100)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999873
No 73
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=21.38 E-value=4e+02 Score=27.49 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhhhh---h-hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHH
Q 040886 300 LTRQCAYRIDALNGYLN---T-EIQAAPEIKSKIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKN 375 (475)
Q Consensus 300 ~lr~~~~~l~aL~~~l~---s-~~q~p~~~r~~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~ 375 (475)
++||+..+.+-+.+|+. . ....|. ...+.|..++++...+--.|+.++...+ +. ..+..+..+..+.+.
T Consensus 239 tlRQlGAnfEL~a~~l~WL~~~g~~~~~----~aa~a~~~ias~Ak~~QFrLARAv~r~r--~~-~~~~~Ld~~~~ay~~ 311 (319)
T PF08893_consen 239 TLRQLGANFELLASYLRWLDAQGFSGPA----EAAEACRTIASEAKVVQFRLARAVARGR--FD-DCEDCLDPMEAAYDR 311 (319)
T ss_pred hHHhccccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHcCC--CC-CchhHHHHHHHHHHH
Confidence 47777777776666543 1 122332 2568899999999888888999987666 32 234447888888888
Q ss_pred HHHHHh
Q 040886 376 LNTLLK 381 (475)
Q Consensus 376 L~~~l~ 381 (475)
+-..|.
T Consensus 312 ~~~~L~ 317 (319)
T PF08893_consen 312 AMDGLA 317 (319)
T ss_pred HHHHHh
Confidence 777664
No 74
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=6e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040886 323 PEIKSKIQEACTEMSLESGRALKELTLAIKKTSQQ 357 (475)
Q Consensus 323 ~~~r~~l~~~~~~l~~~~~~~L~~La~sl~~~~~~ 357 (475)
+++-..+..+.++++..+..+|+.|+.++..+..+
T Consensus 124 p~VL~DlE~~~~el~~~vD~llr~lgg~lh~is~l 158 (222)
T KOG4514|consen 124 PSVLSDLELEAQELASSVDNLLRNLGGLLHSISSL 158 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 45666778888999999999999999999998843
No 75
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=20.46 E-value=2.8e+02 Score=27.45 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Q 040886 186 AHKRLSTVIIGGSACIIISILICPVWAGQDLHNLI 220 (475)
Q Consensus 186 A~~R~~~I~iGi~ia~lVs~~i~P~~a~~~L~~~l 220 (475)
+.-=+..+.+|++|+.+++.-++-. ..-+||+.+
T Consensus 143 arLLLvGVALGIi~~A~mTWA~YFS-~sL~LRQLM 176 (326)
T COG4139 143 SRLLLAGVALGIICSALMTWAIYFS-TSLDLRQLM 176 (326)
T ss_pred HHHHHHHHHHHHHHHHHhHhhheee-ccccHHHHH
Confidence 4444567789999999988766543 233455443
No 76
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=20.22 E-value=4.1e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040886 398 TVASLLIDVVNCTEKVAESAYELAS 422 (475)
Q Consensus 398 t~asllieiv~~l~~l~~~v~eL~~ 422 (475)
.....++.++..+|++.|....+++
T Consensus 62 ~~~~~~~~i~~~lERigD~~~nIae 86 (88)
T PF01895_consen 62 RELVGLLRIARDLERIGDHAVNIAE 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888889988888887765
Done!