Query 040886
Match_columns 475
No_of_seqs 302 out of 969
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olt_A Hypothetical protein; s 35.7 2.5E+02 0.0085 25.4 20.0 21 402-422 198-218 (227)
2 3ne5_A Cation efflux system pr 26.6 3.3E+02 0.011 30.8 11.6 20 191-210 1021-1040(1054)
3 4dx5_A Acriflavine resistance 23.8 8.2E+02 0.028 27.5 14.7 20 191-210 472-491 (1057)
4 1xwm_A PHOU, phosphate uptake 22.0 2.1E+02 0.0073 25.4 7.3 94 329-428 12-108 (217)
5 1wrd_A TOM1, target of MYB pro 20.9 3.3E+02 0.011 21.9 7.7 84 329-422 11-94 (103)
6 2i0m_A Phosphate transport sys 19.6 3.7E+02 0.013 23.7 8.4 94 329-428 12-108 (216)
7 3ne5_A Cation efflux system pr 17.6 9.5E+02 0.033 27.0 13.0 23 190-212 486-508 (1054)
8 1t72_A Phosphate transport sys 17.3 3.3E+02 0.011 24.2 7.5 94 329-428 16-112 (227)
9 4dx5_A Acriflavine resistance 17.0 1.1E+03 0.038 26.4 14.2 20 191-210 1005-1024(1057)
10 3mp7_B Preprotein translocase 15.1 1.8E+02 0.006 21.5 3.9 45 23-67 4-49 (61)
No 1
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=35.75 E-value=2.5e+02 Score=25.36 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040886 402 LLIDVVNCTEKVAESAYELAS 422 (475)
Q Consensus 402 llieiv~~l~~l~~~v~eL~~ 422 (475)
.+.+++..++++.|..+..|.
T Consensus 198 ~~~ei~~~lE~i~D~~e~vA~ 218 (227)
T 2olt_A 198 FLYKTIEWVGGLADLAERVGS 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777776664
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=26.65 E-value=3.3e+02 Score=30.79 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040886 191 STVIIGGSACIIISILICPV 210 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~ 210 (475)
..+++|++++++++.++.|.
T Consensus 1021 ~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1021 APMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 45678888999999999886
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=23.77 E-value=8.2e+02 Score=27.54 Aligned_cols=20 Identities=10% Similarity=0.464 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040886 191 STVIIGGSACIIISILICPV 210 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~ 210 (475)
..+++|++++++++.++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888885
No 4
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=21.97 E-value=2.1e+02 Score=25.42 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcc---cCCchhhhhHHHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWE---DCDLLTVVPVATVASLLID 405 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~---~~~~~~~~~~at~asllie 405 (475)
+..+..+|+..+.+.+...-.++.+.. . ..--.+........+|...+...-.+ .-.+. ..-.....-++.
T Consensus 12 ~~~~l~~M~~~v~~ml~~a~~al~~~d--~--~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~p~--~~d~~~~~~~l~ 85 (217)
T 1xwm_A 12 LHNKLIEMGRLTEVALQQAIEAFQTQN--A--NLAMAVIDGDGSIDALEEEVNDFALWLIAAQQPV--ATDLRRIVAAIK 85 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--H--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--H--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH
Confidence 345566677777777776666666433 1 00111222233444444443220000 00111 112356777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 040886 406 VVNCTEKVAESAYELASAANFES 428 (475)
Q Consensus 406 iv~~l~~l~~~v~eL~~~a~F~~ 428 (475)
++.++|++-|....+++.+.+..
T Consensus 86 i~~~lERIgD~a~nIa~~~~~~~ 108 (217)
T 1xwm_A 86 IASDIERIADFAVNIAKACIRIG 108 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998887665
No 5
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=20.94 E-value=3.3e+02 Score=21.92 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccCCchhhhhHHHHHHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDCDLLTVVPVATVASLLIDVVN 408 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~at~asllieiv~ 408 (475)
...+++.+ ..-.++|.++-++..... +....+-.+..+...++..+..+....-. .+ .. -...=++++.+
T Consensus 11 ~~~el~~v-~~n~~lL~EML~~~~p~~--~~~~~~el~~eL~~~c~~~qp~i~~li~~-~~---de---e~l~~lL~~ND 80 (103)
T 1wrd_A 11 LRSELEMV-SGNVRVMSEMLTELVPTQ--AEPADLELLQELNRTCRAMQQRVLELIPQ-IA---NE---QLTEELLIVND 80 (103)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHSCTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC---CH---HHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCCC--CCcccHHHHHHHHHHHHHHHHHHHHHHhc-cC---CH---HHHHHHHHhhH
Confidence 33455443 334455555544443222 11112233556666666666665421111 11 11 23455678999
Q ss_pred HHHHHHHHHHHHHh
Q 040886 409 CTEKVAESAYELAS 422 (475)
Q Consensus 409 ~l~~l~~~v~eL~~ 422 (475)
+|.++++.++.+..
T Consensus 81 ~L~~vl~ry~~~~~ 94 (103)
T 1wrd_A 81 NLNNVFLRHERFER 94 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
No 6
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=19.60 E-value=3.7e+02 Score=23.71 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCccc---CCchhhhhHHHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWED---CDLLTVVPVATVASLLID 405 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~---~~~~~~~~~at~asllie 405 (475)
++.+..+|+..+.+.+...-.++.+.. . ..--.+....+...+|...+...-..- ..+.. .-..+...++.
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d--~--~~a~~v~~~d~~iD~l~~~I~~~~~~lla~~~p~a--~dlr~i~~~l~ 85 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKD--K--EMAELIINKDHAINQGQSAIELTCARLLALQQPQV--SDLRFVISIMS 85 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC--H--HHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcH--HHHHHHHHHHH
Confidence 456677778888888877777776433 1 011123344445555555553211100 01111 22346777889
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 040886 406 VVNCTEKVAESAYELASAANFES 428 (475)
Q Consensus 406 iv~~l~~l~~~v~eL~~~a~F~~ 428 (475)
++.++|++-|....+++.+....
T Consensus 86 i~~dlERIgD~a~~Ia~~~~~~~ 108 (216)
T 2i0m_A 86 SCSDLERMGDHMAGIAKAVLQLK 108 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998776543
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=17.63 E-value=9.5e+02 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 040886 190 LSTVIIGGSACIIISILICPVWA 212 (475)
Q Consensus 190 ~~~I~iGi~ia~lVs~~i~P~~a 212 (475)
-..+++|++++++++.++.|.-.
T Consensus 486 ~~~~~~gl~~s~~~~l~~~P~l~ 508 (1054)
T 3ne5_A 486 AFTKTYAMAGAALLAIVVIPILM 508 (1054)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999643
No 8
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=17.35 E-value=3.3e+02 Score=24.21 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccC---CchhhhhHHHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDC---DLLTVVPVATVASLLID 405 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~---~~~~~~~~at~asllie 405 (475)
+..++.+|+..+.+.+...-.++.+.. . ..--.+....+...+|...+...-.+-. .+. ..-......++.
T Consensus 16 ~~~~l~~M~~~v~~~l~~a~~al~~~d--~--~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~--~~d~~~~~~~l~ 89 (227)
T 1t72_A 16 TKEQVIKMAKLVQEAIDKATEALNKQN--V--ELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPE--AGDLRMIMGIYK 89 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--H--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHH
Confidence 345666777777777777777776433 1 0111133334455555554432100000 000 112346667778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 040886 406 VVNCTEKVAESAYELASAANFES 428 (475)
Q Consensus 406 iv~~l~~l~~~v~eL~~~a~F~~ 428 (475)
++.++|++-|....+++.+.+..
T Consensus 90 i~~~lERIgD~a~nIa~~~~~~~ 112 (227)
T 1t72_A 90 IVSDLERMGDEAENIAERAILLA 112 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888887766543
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=17.01 E-value=1.1e+03 Score=26.41 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 040886 191 STVIIGGSACIIISILICPV 210 (475)
Q Consensus 191 ~~I~iGi~ia~lVs~~i~P~ 210 (475)
..+++|++++++++.++.|.
T Consensus 1005 ~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1005 TGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667888889999888886
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=15.08 E-value=1.8e+02 Score=21.51 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=26.4
Q ss_pred hhHhHHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HHHHHHHHHhh
Q 040886 23 LPEKSKANVVEVVNKVIKLGKDDPRRITHSIKVG-LALTMVSIFYY 67 (475)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~falK~g-lA~~La~ll~~ 67 (475)
+.+.+++.+.+-.|-+..-.++|...+.-..|.. +...+..++.|
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGM 49 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666777888998888887774 34444444433
Done!