Query 040886
Match_columns 475
No_of_seqs 302 out of 969
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 20:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040886.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040886hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcta1 a.7.12.1 (A:9-107) Hyp 35.6 75 0.0055 23.1 8.3 87 331-424 8-94 (99)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.5 1.3E+02 0.0091 26.3 6.1 10 110-119 8-17 (248)
3 d1t72a_ a.7.12.1 (A:) Phosphat 11.8 1.9E+02 0.014 23.5 6.4 89 329-424 16-108 (215)
4 d1m47a_ a.26.1.2 (A:) Interleu 8.2 1.6E+02 0.011 22.7 3.8 35 406-440 12-51 (128)
5 d1sumb_ a.7.12.1 (B:) PhoU hom 8.1 3.3E+02 0.024 22.1 6.6 92 328-425 10-104 (225)
6 d1wrda1 a.7.8.1 (A:215-307) Ta 7.5 3.8E+02 0.027 19.1 6.9 23 399-421 66-88 (93)
7 d1g5za_ a.24.12.1 (A:) Outer s 7.3 1.7E+02 0.012 23.7 3.8 22 403-424 16-37 (164)
8 d1rp3a3 a.177.1.1 (A:0-86) Sig 6.3 4.2E+02 0.03 18.5 9.5 68 334-411 13-83 (87)
9 d2yvxa3 f.57.1.1 (A:276-448) M 6.0 4.8E+02 0.035 20.8 6.3 35 106-140 87-121 (173)
10 d1u5ta1 a.4.5.54 (A:20-164) Va 5.9 4.9E+02 0.036 20.4 6.1 36 301-336 17-52 (145)
No 1
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.55 E-value=75 Score=23.10 Aligned_cols=87 Identities=15% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccCCchhhhhHHHHHHHHHHHHHHH
Q 040886 331 EACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDCDLLTVVPVATVASLLIDVVNCT 410 (475)
Q Consensus 331 ~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~~~~at~asllieiv~~l 410 (475)
+.+.+|+..+.+.|...-.++.+.- + ..-..+....+...++...+...-..... .+.-......++.++..+
T Consensus 8 ~~l~~M~~~~~~ml~~a~~a~~~~D--~--~~A~~v~~~d~~ID~l~~~i~~~l~~~~~---~~~~~~~~~~~~~i~~~l 80 (99)
T d1vcta1 8 EIFIEMKDTVELMVDLAYASLLFGD--K--EIAEEVLELEERIDLLNYQLMMHSVLAAR---NVKEAEQVITILQIANAI 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--H--HHHHHHHHhhHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHH
Confidence 4455677777777777777776533 1 11222444455555555554321111111 112223344567899999
Q ss_pred HHHHHHHHHHHhcC
Q 040886 411 EKVAESAYELASAA 424 (475)
Q Consensus 411 ~~l~~~v~eL~~~a 424 (475)
|++-|...++++.+
T Consensus 81 ERIgDha~nIae~v 94 (99)
T d1vcta1 81 EDISNAAGDLAKMV 94 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888654
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.54 E-value=1.3e+02 Score=26.29 Aligned_cols=10 Identities=0% Similarity=-0.612 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 040886 110 VAGGLGVGAH 119 (475)
Q Consensus 110 iGa~lg~~~~ 119 (475)
+|.+-++.+|
T Consensus 8 l~l~~a~~~~ 17 (248)
T d2r6gf1 8 LGLLGLLVGY 17 (248)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 3
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=11.76 E-value=1.9e+02 Score=23.51 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCcccCCchh-hhh---HHHHHHHHH
Q 040886 329 IQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWEDCDLLT-VVP---VATVASLLI 404 (475)
Q Consensus 329 l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~~~---~at~aslli 404 (475)
++.+..+|+..+...+...-.++.+.. + ..-..+.+..+....+...+...-. ..+. ..| -..+....+
T Consensus 16 l~~~l~~M~~~v~~~l~~~~~al~~~D--~--~~a~~v~~~d~~id~l~~~I~~~~~---~~l~~~~p~a~dlr~~~~~~ 88 (215)
T d1t72a_ 16 TKEQVIKMAKLVQEAIDKATEALNKQN--V--ELAEEVIKGDDTIDLLEVDIERRCI---RMIALYQPEAGDLRMIMGIY 88 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHTHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--H--HHHHHHHHhHHHHHHHHHHHHHHHH---HHHhhcCchhHHHHHHHHHH
Confidence 456667777788888887777777533 1 1111133333445555544432110 0110 011 124566677
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 040886 405 DVVNCTEKVAESAYELASAA 424 (475)
Q Consensus 405 eiv~~l~~l~~~v~eL~~~a 424 (475)
.++.++|++-|....+++.+
T Consensus 89 ~i~~~lERIgD~a~~ia~~~ 108 (215)
T d1t72a_ 89 KIVSDLERMGDEAENIAERA 108 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988888665
No 4
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.21 E-value=1.6e+02 Score=22.72 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-----HHHhcCCCCCCCCccccCCCCC
Q 040886 406 VVNCTEKVAESAY-----ELASAANFESIDSAISTEKPRS 440 (475)
Q Consensus 406 iv~~l~~l~~~v~-----eL~~~a~F~~~~~~~~~~~~~~ 440 (475)
..-||+-+.+.|+ .|.+...||++.|++..|+-|-
T Consensus 12 LLlDLq~LL~gvnNy~n~kLsrMltFKFymPKkaTELkHL 51 (128)
T d1m47a_ 12 LLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHL 51 (128)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHTTSCBCCBSCCCSGGGG
T ss_pred HHHHHHHHHHhcccccCccchhhheeeecCCchhhHhHHH
Confidence 3456777888887 5999999999999988877663
No 5
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=8.13 E-value=3.3e+02 Score=22.07 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHHHHHHHHHHHHHhcCCccc---CCchhhhhHHHHHHHHH
Q 040886 328 KIQEACTEMSLESGRALKELTLAIKKTSQQPITSADTHIKNAKSAAKNLNTLLKSGIWED---CDLLTVVPVATVASLLI 404 (475)
Q Consensus 328 ~l~~~~~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~~~a~~~L~~~l~~~~~~~---~~~~~~~~~at~aslli 404 (475)
.++.+..+|+.-+...+...-.++.+.- + ..-..+.+..+....++..+...-..- ..+.+ .-..+....+
T Consensus 10 ~l~~~i~~M~~~v~~~l~~a~~al~~~D--~--~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a--~dlR~i~~~l 83 (225)
T d1sumb_ 10 EFKKGVLKAGWFIEKMFRNSISSLVERN--E--SLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIG--KPLLTVTAGI 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--H--HHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCch--hHHHHHHHHH
Confidence 4556667777778788877777777543 1 111123334444555554442210000 01111 1123556667
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 040886 405 DVVNCTEKVAESAYELASAAN 425 (475)
Q Consensus 405 eiv~~l~~l~~~v~eL~~~a~ 425 (475)
.++.++|++-|-...+++.+.
T Consensus 84 ~i~~dlERIgD~a~~Ia~~~~ 104 (225)
T d1sumb_ 84 RVAELIENIADKCHDIAKNVL 104 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888886543
No 6
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.53 E-value=3.8e+02 Score=19.06 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040886 399 VASLLIDVVNCTEKVAESAYELA 421 (475)
Q Consensus 399 ~asllieiv~~l~~l~~~v~eL~ 421 (475)
+..-++++.++|..++..++.+.
T Consensus 66 ~l~~lL~~ND~L~~vl~ry~r~~ 88 (93)
T d1wrda1 66 LTEELLIVNDNLNNVFLRHERFE 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999988765
No 7
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=7.35 E-value=1.7e+02 Score=23.73 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 040886 403 LIDVVNCTEKVAESAYELASAA 424 (475)
Q Consensus 403 lieiv~~l~~l~~~v~eL~~~a 424 (475)
...-|.+++.|+.+++||++.|
T Consensus 16 fv~aVKEVetLv~SIDELA~KA 37 (164)
T d1g5za_ 16 VVLAVKEVETLLASIDELATKA 37 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 3456888999999999999654
No 8
>d1rp3a3 a.177.1.1 (A:0-86) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=6.34 E-value=4.2e+02 Score=18.46 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccccHHHH-HHHHHHHHHHHhcCCcccCCchhhhhHHHHHHHHH--HHHHHH
Q 040886 334 TEMSLESGRALKELTLAIKKTSQQPITSADTHIKNA-KSAAKNLNTLLKSGIWEDCDLLTVVPVATVASLLI--DVVNCT 410 (475)
Q Consensus 334 ~~l~~~~~~~L~~La~sl~~~~~~~~~~~~~~~~~~-~~a~~~L~~~l~~~~~~~~~~~~~~~~at~aslli--eiv~~l 410 (475)
+++-.+...+.+.++..++... |+ ..+ ..++ +.+.-.|-+.+.+ .++-...+|.|||..-| .+.+.+
T Consensus 13 e~li~~~~~LV~~ia~~~~~~~--~~-~~e--~eDL~q~G~igL~~A~~~-----yd~~~g~~F~tYA~~~Irgai~d~l 82 (87)
T d1rp3a3 13 EELILKYLPLVKAIATNIKKHL--PE-DVD--IRDLISYGVIGLIKAVDN-----LSTENPKRAEAYIKLRIKGAIYDYL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--CT-TSC--HHHHHHHHHHHHHHHHHT-----CCCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhccC--CC-CCC--HHHHHHHHHHHHHHHHHh-----hCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677777788888887554 32 222 3444 6788889888887 66666678999999877 565554
Q ss_pred H
Q 040886 411 E 411 (475)
Q Consensus 411 ~ 411 (475)
.
T Consensus 83 R 83 (87)
T d1rp3a3 83 R 83 (87)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.03 E-value=4.8e+02 Score=20.83 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 040886 106 LATLVAGGLGVGAHHLASLSGEIGEPILLGFFVFI 140 (475)
Q Consensus 106 lGTliGa~lg~~~~~i~~~~g~~~~p~ll~l~vfl 140 (475)
.|-+.|.++|+++.......++......+++++++
T Consensus 87 vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~ 121 (173)
T d2yvxa3 87 VGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVL 121 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 46667777776554333323332223334444444
No 10
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.95 E-value=4.9e+02 Score=20.37 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHH
Q 040886 301 TRQCAYRIDALNGYLNTEIQAAPEIKSKIQEACTEM 336 (475)
Q Consensus 301 lr~~~~~l~aL~~~l~s~~q~p~~~r~~l~~~~~~l 336 (475)
+......+..+..--.++|..-+++|..|.+-|..+
T Consensus 17 L~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~i 52 (145)
T d1u5ta1 17 LMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSI 52 (145)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHh
Confidence 333333344444434466777777888877776554
Done!