BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040887
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 150/346 (43%), Gaps = 51/346 (14%)
Query: 46 LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPST 105
LH+AA++GH E+ + Q +N TPLHCAAR G N
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNM-------------- 95
Query: 106 SQAPVDLLRMENA---MGNTALHEALFMLGRVNVWRTSIA-----GSSLTMAHSYFLSNP 157
V LL NA + TA H L + R T +A S M F
Sbjct: 96 ----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151
Query: 158 TLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCC-KNIEDKSPLSLAIEMGNTDVLEYILR 216
A ++ +A L+ D + KN +PL +A+ N D+++ +L
Sbjct: 152 VAAKYGKVR---------VAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLLP 200
Query: 217 --SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN 274
P +W+ G +PL +A K+ + V L G SA ++ + + P+HLA + GHA
Sbjct: 201 RGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 275 VMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334
MV LL + +G LH A+ GH + +I+ + M + +M G
Sbjct: 260 -MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRM---G 311
Query: 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380
TPLH+A+ +G+ ++V LL++ +++ + K K G + A ++ +
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGH 356
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 197 SPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL +A MG+ +++ +L R +S ++PL +A + + V L N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
K K+ P+H A + GH N MV+LL E T G LH AA+ GH + V A++E
Sbjct: 76 KAKDDQTPLHCAARIGHTN-MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
+ M + G TPLH+AA +G +V LL ++P+ K G+T +A
Sbjct: 135 KEASQAC-------MTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVA 186
Query: 376 L 376
+
Sbjct: 187 V 187
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 138/345 (40%), Gaps = 31/345 (8%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
D + LH AA+ GH + K+ N G TPLH AAR G + T AL++
Sbjct: 79 DDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 101 HIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160
++ L + G + E L + + + LT H +A
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLH--------VA 186
Query: 161 IDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS 220
+ N+L + L S N +PL +A + +V +L+ S
Sbjct: 187 VHH-------NNLDIVKLLLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 221 GISWS-SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVEL 279
+ S G +PL +A ++ + + LL + NK L P+HL + GH V L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 280 LKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
+K T G LH A+ G+ +VK +++ VN + G +PLH
Sbjct: 298 IKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQ-------HQADVNAKTKLGYSPLH 349
Query: 340 LAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384
AA GH+ +V LL+ G S P+ + G T +A R Y+ +
Sbjct: 350 QAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVT 393
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSL 288
+PL VA+ +L + L G S N + P+H+A + GH V LL+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
D+ LH AA+ GH +MVK ++E + N G+TPLH+AA GH +
Sbjct: 76 KAKDDQTP-LHCAARIGHTNMVKLLLE-------NNANPNLATTAGHTPLHIAAREGHVE 127
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387
V ALL S + K+G T +A + Y + +AE
Sbjct: 128 TVLALLEKEASQACM-TKKGFTPLHVAAK--YGKVRVAE 163
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 134/318 (42%), Gaps = 36/318 (11%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
T G + LH+AA+ GH E + + T +G TPLH AA+ GK+ A L++
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERD 169
Query: 100 KHIPSTSQAPVDLLRMENAMGN---TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN 156
H NA G T LH V V ++ L + +
Sbjct: 170 AH--------------PNAAGKNGLTPLH--------VAVHHNNLDIVKLLLPRGGSPHS 207
Query: 157 PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR 216
P + + V +A L+ + ++++ +PL LA + G+ +++ +L
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 217 SLPSG-ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV 275
+G + SG +PL + ++ ++ V +L +G + P+H+A G+
Sbjct: 267 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK- 325
Query: 276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335
+V+ L + + T G + LH AA+ GH D+V +++ + N++ DG
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------NEVSSDGT 378
Query: 336 TPLHLAALHGHSQVVYAL 353
TPL +A G+ V L
Sbjct: 379 TPLAIAKRLGYISVTDVL 396
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 192 NIEDKS---PLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGVCYLLE 247
N+ +KS PL L + G+ V + +++ + + G +PL VA+ N+ + L
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH- 306
+ K K P+H A + GH +++ LLK P+ V+ +G L A + G+
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLGYI 390
Query: 307 --ADMVKAIIE 315
D++K + +
Sbjct: 391 SVTDVLKVVTD 401
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 78.6 bits (192), Expect = 5e-15, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
+G++PL +A + +L V LL G K+K P+HLA +NGH V V+LL E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGA 59
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
NG LH AA+NGH ++VK ++E VN D++G TPLHLAA +G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNG 112
Query: 346 HSQVVYALLRYG 357
H +VV LL G
Sbjct: 113 HLEVVKLLLEAG 124
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH+AA++GH E+ K+ +N + G TPLH AAR G L L++
Sbjct: 1 NGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH+AA++GH E+ K+ +N + G TPLH AAR G L L++
Sbjct: 34 NGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH+AA++GH E+ K+ +N + G TPLH AAR G L L++
Sbjct: 67 NGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
A E GN D ++ +L + S S GK+PL +A + + V LL G K+ +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
P+HLA +NGH V+ LL + P+ +D G LH AA+NGH ++VK +
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAENGHKEVVKLL------- 122
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
++ N D DG TPL LA HG+ +VV L + G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 196 KSPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL 254
K+PL LA E G+ +V++ +L + S GK+PL +A + + V LL G
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVK 311
K+ + P+HLA +NGH V+ LL + P+ +D G L A ++G+ ++VK
Sbjct: 98 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD-GRTPLDLAREHGNEEVVK 153
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+NG+ D VK ++E VN D DG TPLHLAA +GH +VV LL G ++
Sbjct: 11 AAENGNKDRVKDLLENGAD-------VNASDSDGKTPLHLAAENGHKEVVKLLLSQG-AD 62
Query: 361 PDLKNKQGMTAYKMALREYYMQ 382
P+ K+ G T +A + +
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKE 84
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
+DG + LH+AA++GH E+ K+ N ++ G TPLH AA G L+
Sbjct: 68 SDGKTPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 100 KHIPSTSQA----PVDLLR 114
P+TS + P+DL R
Sbjct: 127 AD-PNTSDSDGRTPLDLAR 144
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 15/83 (18%)
Query: 10 FEAAIRGNID---DFL--FSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQY 64
EAA GN D D L +D+ D +DG + LH+AA++GH E+ K+
Sbjct: 9 IEAAENGNKDRVKDLLENGADVNASD---------SDGKTPLHLAAENGHKEVV-KLLLS 58
Query: 65 YPFLINKTNNQGDTPLHCAARAG 87
N ++ G TPLH AA G
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENG 81
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG K+K+ P+HLA + GH ++ LLK
Sbjct: 3 GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ D G LH AA+ GH ++V+ +++ G + VN D+DG TPLHLAA GH
Sbjct: 62 NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKS 392
++V LL+ G ++ + ++K G T + +A+RE + IAE +K+
Sbjct: 114 LEIVEVLLKAG-ADVNAQDKFGKTPFDLAIREGH--EDIAEVLQKA 156
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
DG + LH+AA+ GH EI + + +N + G TPLH AAR G L L+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTDVLEYILRS-LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
A E GN D ++ +L + S S G++PL A + + + LL G K+ +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
P+H A +NGH ++ LL + P+ +D G LH+AA+NGH ++VK +
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSD-GRTPLHYAAENGHKEIVKLL------- 122
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
++ N D DG TPL LA HG+ ++V L + G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK ++ A V LLE NG + + P+H A +NGH ++ LL + P
Sbjct: 5 GKRLIEAAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP 63
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ +D G LH+AA+NGH ++VK + ++ N D DG TPLH AA +GH
Sbjct: 64 NAKDSD-GRTPLHYAAENGHKEIVKLL-------LSKGADPNAKDSDGRTPLHYAAENGH 115
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ--TSIAEKQ 389
++V LL G ++P+ + G T +A RE+ + + EKQ
Sbjct: 116 KEIVKLLLSKG-ADPNTSDSDGRTPLDLA-REHGNEEIVKLLEKQ 158
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 196 KSPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL 254
++PL A E G+ ++++ +L + S G++PL A + + + LL G
Sbjct: 38 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVK 311
K+ + P+H A +NGH ++ LL + P+ +D G L A ++G+ ++VK
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD-GRTPLDLAREHGNEEIVK 153
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
+DG + LH AA++GH EI K+ N ++ G TPLH AA G L+
Sbjct: 68 SDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 100 KHIPSTS----QAPVDLLR 114
P+TS + P+DL R
Sbjct: 127 AD-PNTSDSDGRTPLDLAR 144
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
+DG + LH AA++GH EI K+ N ++ G TPLH AA G
Sbjct: 35 SDGRTPLHYAAENGHKEIV-KLLLSKGADPNAKDSDGRTPLHYAAENG 81
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG K+K+ P+HLA + GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ D G LH AA+ GH ++V+ +++ G + VN D+DG TPLHLAA GH
Sbjct: 74 NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL+ G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKAG-ADVNAQDKFGKTAFDISI 154
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
+G LH AA+ GH ++V+ +++ G + VN D+DG TPLHLAA GH ++V
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
LL+ G ++ + K+K G T +A RE +++
Sbjct: 99 LLKAG-ADVNAKDKDGYTPLHLAAREGHLE 127
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
+D G +L AA+ G D V+ I+ G + VN D+DG TPLHLAA GH ++V
Sbjct: 12 SDLGKKLLE-AARAGQDDEVR-ILMANGAD------VNAKDKDGYTPLHLAAREGHLEIV 63
Query: 351 YALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
LL+ G ++ + K+K G T +A RE +++
Sbjct: 64 EVLLKAG-ADVNAKDKDGYTPLHLAAREGHLE 94
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
G +PL +A ++ +L + +L G K+K+ P+HLA + GH ++ LLK
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ D G LH AA+ GH ++V+ +++ G + VN D+ G T ++ +G
Sbjct: 106 VNAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAQDKFGKTAFDISIDNG 157
Query: 346 HSQVVYAL 353
+ + L
Sbjct: 158 NEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
DG + LH+AA+ GH EI + + +N + G TPLH AAR G L L+
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 100
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG K+K+ P+HLA + GH ++ LLK
Sbjct: 3 GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ D G LH AA+ GH ++V+ +++ G + VN D+DG TPLHLAA GH
Sbjct: 62 NAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL+ G ++ + ++K G T + +A+
Sbjct: 114 LEIVEVLLKAG-ADVNAQDKFGKTPFDLAI 142
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
+G LH AA+ GH ++V+ +++ G + VN D+DG TPLHLAA GH ++V
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLK-AGAD------VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
LL+ G ++ + K+K G T +A RE +++
Sbjct: 87 LLKAG-ADVNAKDKDGYTPLHLAAREGHLE 115
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
G +PL +A ++ +L + +L G K+K+ P+HLA + GH ++ LLK
Sbjct: 33 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
+ D G LH AA+ GH ++V+ +++ G + VN D+ G TP LA +
Sbjct: 93 DVNAKDKD-GYTPLHLAAREGHLEIVEVLLK-AGAD------VNAQDKFGKTPFDLAIDN 144
Query: 345 GHSQVVYALLR 355
G+ + L +
Sbjct: 145 GNEDIAEVLQK 155
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+ G D V+ I+ G + VN D+DG TPLHLAA GH ++V LL+ G ++
Sbjct: 9 AARAGQDDEVR-ILMANGAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-AD 60
Query: 361 PDLKNKQGMTAYKMALREYYMQ 382
+ K+K G T +A RE +++
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLE 82
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
DG + LH+AA+ GH EI + + +N + G TPLH AAR G L L+
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLL 88
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTD-VLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
A E GN D V + I S S G++PL A K+ + + LL G K+ +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
P+H A K GH ++ L+ + + +D G LH+AAK GH ++VK +I G +
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSD-GRTPLHYAAKEGHKEIVKLLIS-KGAD 128
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN D DG TPL LA HG+ ++V L + G
Sbjct: 129 ------VNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK ++ A V L+E NG + + P+H A K GH ++ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ +D G LH+AAK GH ++VK +I G + VN D DG TPLH AA GH
Sbjct: 64 NAKDSD-GRTPLHYAAKEGHKEIVKLLIS-KGAD------VNAKDSDGRTPLHYAAKEGH 115
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379
++V L+ G ++ + + G T +A RE+
Sbjct: 116 KEIVKLLISKG-ADVNTSDSDGRTPLDLA-REH 146
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
+DG + LH AAK GH EI K+ +N ++ G TPLH AA+ G
Sbjct: 35 SDGRTPLHYAAKEGHKEIV-KLLISKGADVNAKDSDGRTPLHYAAKEG 81
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
+DG + LH AAK GH EI K+ +N +++ G TPL A G
Sbjct: 101 SDGRTPLHYAAKEGHKEIV-KLLISKGADVNTSDSDGRTPLDLAREHG 147
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + + P+HLA NGH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK--NGA 71
Query: 287 SLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ +D G LH AA GH ++V+ +++ G + VN D DG+TPLHLAA +G
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLK-HGAD------VNAYDNDGHTPLHLAAKYG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
H ++V LL++G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
+ G +PL +A +L + +L NG + + P+HLA GH ++ LLK
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
+ + D G LH AAK GH ++V+ +++
Sbjct: 105 DVNAYDND-GHTPLHLAAKYGHLEIVEVLLK 134
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AA +GH EI + ++ +N +N G TPLH AA+ G L L+
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
DG + LH+AA +GH EI + + +N ++ G TPLH AA G L L+
Sbjct: 46 DGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLL 100
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
+N T+N G TPLH AA G L L+ + ++ + L + A G+ + E L
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 129 FMLG-RVNVW 137
G VN +
Sbjct: 100 LKHGADVNAY 109
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 202 AIEMGNTD-VLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET 260
A E GN D V + I S S G++PL A + + V LL G K+ +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 261 LYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320
P+H A +NGH V+ L+ + + +D G LH AA+NGH ++VK +I G +
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKEVVKLLIS-KGAD 128
Query: 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN D DG TPL LA HG+ +VV L + G
Sbjct: 129 ------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK ++ A V L+E NG + + P+H A +NGH V+ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ +D G LH AA+NGH ++VK +I G + VN D DG TPLH AA +GH
Sbjct: 64 NAKDSD-GRTPLHHAAENGHKEVVKLLIS-KGAD------VNAKDSDGRTPLHHAAENGH 115
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIA--EKQ 389
+VV L+ G ++ + + G T +A RE+ + + EKQ
Sbjct: 116 KEVVKLLISKG-ADVNTSDSDGRTPLDLA-REHGNEEVVKLLEKQ 158
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
+DG + LH AA++GH E+ K+ +N ++ G TPLH AA G
Sbjct: 35 SDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENG 81
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
+DG + LH AA++GH E+ K+ +N +++ G TPL A G
Sbjct: 101 SDGRTPLHHAAENGHKEVV-KLLISKGADVNTSDSDGRTPLDLAREHG 147
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + + P+HL NGH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK--YAA 71
Query: 287 SLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ +D +G LH AA GH ++V+ +++ VN MD G TPLHLAA G
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-------VNAMDYQGYTPLHLAAEDG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
H ++V LL+YG ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL L + G+ +++E +L+ + S SG +PL +A + +L + +L G
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
+ + P+HLA ++GH ++ LLK
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA GH EI + +Y +N + QG TPLH AA G L L+ +
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGAD-VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEAL 128
+ + + + GN L E L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G +PL + +L + +L +K P+HLA GH + VE+L ++
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEI-VEVLLKYGAD 105
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ G LH AA++GH ++V+ +++ VN D+ G T ++ +G+
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-------VNAQDKFGKTAFDISIDNGN 158
Query: 347 SQVVYALLR 355
+ L +
Sbjct: 159 EDLAEILQK 167
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+ +GH EI + +Y +N ++ G TPLH AA G L L+ +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ + L + G+ + E L G
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNM 321
P+HLA K GH ++ LLK + DN G LH AA NGH ++V+ +++ G +
Sbjct: 50 PLHLAAKTGHLEIVEVLLK--YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGAD- 105
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
VN D +G TPLHLAA GH ++V LL+YG ++ + ++K G TA+ +++
Sbjct: 106 -----VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSS-GKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA + G+ +++E +L+ +W + G +PL +A +L + +L +G
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
K+ E P+HLA +GH ++ LLK
Sbjct: 109 KDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AAK+GH EI + +Y +N +N G TPLH AA G L L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLL 100
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
AA+ G D V+ + M VN D G+TPLHLAA GH ++V LL+YG
Sbjct: 21 AARAGQDDEVRIL-------MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G++ LH+AA +GH EI + ++ +N + +G TPLH AA G L L+ +
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 102 IPSTSQ 107
+ + +
Sbjct: 139 VNAQDK 144
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG ++ P+HLA + GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ +G LH AAK GH ++V+ +++ G ++ D+ + G+TPLHLAA GH
Sbjct: 74 NALDF-SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTI------GSTPLHLAADTGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL+YG ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G LL AA++G + +I +N + GDTPLH AAR G L L+
Sbjct: 15 GKKLLE-AARAGQDD-EVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 65.5 bits (158), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+HLA +NGH V V+LL E NG LH AA+NGH ++VK ++E
Sbjct: 5 PLHLAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN D++G TPLHLAA +GH +VV LL G
Sbjct: 61 ----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
Query: 293 NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352
NG LH AA+NGH ++VK ++E VN D++G TPLHLAA +GH +VV
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKL 53
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
LL G ++ + K+K G T +A R +++
Sbjct: 54 LLEAG-ADVNAKDKNGRTPLHLAARNGHLE 82
Score = 55.1 bits (131), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
+G++PL +A + +L V LL G K+K P+HLA +NGH V V+LL E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGA 59
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
NG LH AA+NGH ++VK ++E
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH+AA++GH E+ K+ +N + G TPLH AAR G L L++
Sbjct: 1 NGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH+AA++GH E+ K+ +N + G TPLH AAR G L L++
Sbjct: 34 NGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 14/162 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + L P+HLA NG ++ LLK
Sbjct: 7 GKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK--NGA 63
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ +D+ G LH AA +GH ++V+ +++ G + VN D G TPLHLAAL G
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGAD------VNAYDRAGWTPLHLAALSG 116
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387
++V LL++G ++ + ++ G+TA+ +++ + Q +AE
Sbjct: 117 QLEIVEVLLKHG-ADVNAQDALGLTAFDISINQG--QEDLAE 155
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA G +++E +L++ S S+G +PL +A +L + +L +G
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA 100
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
++ P+HLA +G ++ LLK
Sbjct: 101 YDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G LL AA E+ +A +N T++ G TPLH AA G+L L+
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGAD--VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ ++ A + L + G+ + E L G
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
+G + LH+AA +G EI + + +N +++ G TPLH AA G L L+
Sbjct: 38 NGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 101 HIPSTSQA 108
+ + +A
Sbjct: 97 DVNAYDRA 104
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK---EW 283
GK L+ A ++ V L+ NG + L P+HLA +GH ++ LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
++ G LH AA GH ++V+ +++ VN D G+TPLHLAA
Sbjct: 74 DAADVY----GFTPLHLAAMTGHLEIVEVLLKYGAD-------VNAFDMTGSTPLHLAAD 122
Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
GH ++V LL+YG ++ + ++K G TA+ +++
Sbjct: 123 EGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
++G +PL +A +L + +L +G + P+HLA GH ++ LLK
Sbjct: 45 NTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
+ F G LH AA GH ++V+ +++ VN D+ G T ++ +
Sbjct: 105 DVNAFDM-TGSTPLHLAADEGHLEIVEVLLKYGAD-------VNAQDKFGKTAFDISIDN 156
Query: 345 GHSQV 349
G+ +
Sbjct: 157 GNEDL 161
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA +GH EI + +Y +N + G TPLH AA G L L+ +
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 102 IPSTSQ 107
+ + +
Sbjct: 139 VNAQDK 144
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA SGH EI + ++ ++ + G TPLH AA G L L+ +
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 102 IPS---TSQAPVDL 112
+ + T P+ L
Sbjct: 106 VNAFDMTGSTPLHL 119
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G LL A E+ IA +N +N G TPLH AA +G L L+ KH
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGAD--VNAVDNTGLTPLHLAAVSGHLEIVEVLL---KH 69
Query: 102 IPSTSQAPV 110
A V
Sbjct: 70 GADVDAADV 78
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + + P+HLA GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ TD G LH AA NGH ++V+ +++ VN D G TPLHLAA GH
Sbjct: 74 NARDTD-GWTPLHLAADNGHLEIVEVLLKYGAD-------VNAQDAYGLTPLHLAADRGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+ G D V+ + M VN D+ G+TPLHLAA GH ++V LL++G ++
Sbjct: 21 AARAGQDDEVRIL-------MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-AD 72
Query: 361 PDLKNKQGMTAYKMALREYYMQ 382
+ ++ G T +A +++
Sbjct: 73 VNARDTDGWTPLHLAADNGHLE 94
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA +G+ +++E +L+ + G +PL +A +L + +L G
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
++ L P+HLA GH ++ LLK
Sbjct: 109 QDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
TDG + LH+AA +GH EI + +Y +N + G TPLH AA G L L+
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
GS+ LH+AA GH EI + ++ +N + G TPLH AA G L L+ +
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ + + L + G+ + E L G
Sbjct: 106 VNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + L P+HLA GH + VE+L +
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEI-VEVLLKHGAD 72
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ G LH AA GH ++V+ +++ G + VN +D G+TPLHLAA+ GH
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGAD------VNAVDTWGDTPLHLAAIMGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
GS+ LH+AA GH EI + ++ +N + GDTPLH AA G L L+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 40 TDGSSL--LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
TD S L LH+AA GH EI + ++ +N + G TPLH AA G L L+
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Query: 98 FAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130
+ + + G+T LH A M
Sbjct: 102 HGADVNAV-----------DTWGDTPLHLAAIM 123
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + L P+HLA GH + VE+L +
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEI-VEVLLKHGAD 72
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ G LH AA GH ++V+ +++ G + VN +D G+TPLHLAA+ GH
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGAD------VNAVDTWGDTPLHLAAIMGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL++G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 40 TDGSSL--LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
TD S L LH+AA GH EI + ++ +N + G TPLH AA G L L+
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Query: 98 FAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ + L + MG+ + E L G
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A R+ V L+ NG + P+HLA GH ++ LLK
Sbjct: 15 GKKLLEAARAGRDDEVRILM-ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ + T G LH AA GH ++V+ +++ G + VN D++G TPLHLAA GH
Sbjct: 74 NAYDT-LGSTPLHLAAHFGHLEIVEVLLK-NGAD------VNAKDDNGITPLHLAANRGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL+YG ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
T GS+ LH+AA GH EI + + +N ++ G TPLH AA G L L+ +
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 100 KHIPSTSQ 107
+ + +
Sbjct: 137 ADVNAQDK 144
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA GH EI + + +N + G TPLH AA G L L+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ + + L + G+ + E L G
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A R+ V L+ NG ++ P+HLA NGH ++ LLK
Sbjct: 15 GKKLLEAARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
+ V G L AA GH ++V+ +++ G + VN D +G+TPLHLAA+ GH
Sbjct: 74 NA-VDHAGMTPLRLAALFGHLEIVEVLLK-NGAD------VNANDMEGHTPLHLAAMFGH 125
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL+ G ++ + ++K G TA+ +++
Sbjct: 126 LEIVEVLLKNG-ADVNAQDKFGKTAFDISI 154
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 192 NIEDKS---PLSLAIEMGNTDVLEYILRSLPSGISWS-SGKSPLQVATKKRNLGVCYLLE 247
N ED S PL LA G+ +++E +L++ + +G +PL++A +L + +L
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL 100
Query: 248 VNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
NG + E P+HLA GH ++ LLK
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK---EW 283
G+ L+ A ++ V L+ NG + P+HLA +GH ++ LLK +
Sbjct: 15 GRKLLEAARAGQDDEVRILM-ANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
+F G LH AA GH ++V+ +++ G + VN MD DG TPLHLAA
Sbjct: 74 DASDVF----GYTPLHLAAYWGHLEIVEVLLK-NGAD------VNAMDSDGMTPLHLAAK 122
Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
G+ ++V LL++G ++ + ++K G TA+ +++
Sbjct: 123 WGYLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA G+ +++E +L+ S G +PL +A +L + +L NG
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
+ + + P+HLA K G+ ++ LLK
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G++ LH+AA SGH EI + ++ ++ ++ G TPLH AA G L L+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLL 100
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AA GH EI + + +N ++ G TPLH AA+ G L L+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTS 106
+N +N G TPLH AA +G L L+ + ++
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG ++ P+HLA GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK--NGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ D+ G LH AA+ GH ++V+ +++ G + VN D G TPLHLAA G
Sbjct: 72 DVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGAD------VNASDSHGFTPLHLAAKRG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
H ++V LL+ G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKNG-ADVNAQDKFGKTAFDISI 154
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSS-GKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA G+ +++E +L++ + S G +PL +A ++ +L + +L NG
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
+ P+HLA K GH ++ LLK
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
+G +PL +A +L + +L NG K+ + P+HLA + GH ++ LLK
Sbjct: 46 TGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK--NG 103
Query: 286 PSLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
+ +D+ G LH AAK GH ++V+ +++ G + VN D+ G T ++ +
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGAD------VNAQDKFGKTAFDISIDN 156
Query: 345 GHSQVVYAL 353
G+ + L
Sbjct: 157 GNEDLAEIL 165
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AA GH EI + + +N ++ G TPLH AAR G L L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLL 100
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG A + P+H+A GH + VE+L
Sbjct: 3 GKKLLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEI-VEVLLRNGAD 60
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
V NG LH AA GH ++V+ +++ VN D G TPL+LAA GH
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-------VNAKDATGITPLYLAAYWGH 113
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++V LL++G ++ + ++K G TA+ +++
Sbjct: 114 LEIVEVLLKHG-ADVNAQDKFGKTAFDISI 142
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL 254
++PL +A +G+ +++E +LR+ ++G +PL +A +L + +L G
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 255 KKNKETLYPIHLACKNGHANVMVELLK 281
K+ + P++LA GH ++ LLK
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA GH EI + + +N + G TPLH AA G L L+ +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ + + L + G+ + E L G
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
V T+G++ LH+AA GH EI + +Y +N + G TPL+ AA G L L+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 98 FAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
+ + + + +GN L E L
Sbjct: 123 HGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 258 KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP 317
K+ P+H A KNGHA + +LL + + D G LH AAKNGHA++VK +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLL---- 61
Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+ VN +DGNTP HLA +GH ++V L G
Sbjct: 62 ---LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 8/95 (8%)
Query: 288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
++ + +G LH AAKNGHA+ VK + ++ VN +DGNTPLHLAA +GH+
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKL-------LSKGADVNARSKDGNTPLHLAAKNGHA 55
Query: 348 QVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
++V LL G ++ + ++K G T +A + + +
Sbjct: 56 EIVKLLLAKG-ADVNARSKDGNTPEHLAKKNGHHE 89
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 221 GISWSS--GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVE 278
G W S G +PL A K + L G ++K+ P+HLA KNGHA ++
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 279 LLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
LL + + D G H A KNGH ++VK +++ G ++
Sbjct: 61 LLAKGADVNARSKD-GNTPEHLAKKNGHHEIVK-LLDAKGADVN 102
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
DG++ LH AAK+GH E K+ +N + G+TPLH AA+ G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNG 53
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAG 87
DG++ LH+AAK+GH EI K+ +N + G+TP H A + G
Sbjct: 41 DGNTPLHLAAKNGHAEIV-KLLLAKGADVNARSKDGNTPEHLAKKNG 86
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG ++ P+HLA GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK--HGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ D G LH AA GH ++V+ +++ G + VN D G TPLHLAA G
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLK-NGAD------VNATDTYGFTPLHLAADAG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
H ++V LL+YG ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKYG-ADVNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
SGK+PL +A K +L + +L +G +K P+HLA GH ++ LLK
Sbjct: 45 DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK--N 102
Query: 285 CPSLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
+ TD G LH AA GH ++V+ +++ VN D+ G T ++
Sbjct: 103 GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD-------VNAQDKFGKTAFDISID 155
Query: 344 HGHSQVVYALLR 355
+G+ + L +
Sbjct: 156 NGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA GH EI + ++ +N + GDTPLH AA G L L+
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD 105
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLG 132
+ +T L + G+ + E L G
Sbjct: 106 VNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AA GH EI + + +N T+ G TPLH AA AG L L+ +
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 102 IPSTSQ 107
+ + +
Sbjct: 139 VNAQDK 144
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 29/154 (18%)
Query: 69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEAL 128
+N ++ G TPLH AA G L L+ KH + A + MG+T LH A
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAA--------DKMGDTPLHLA- 87
Query: 129 FMLGRVNVWRTSIA-GSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL 187
+ G + + + G+ + +Y + LA D A +V + K
Sbjct: 88 ALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAAD------------AGHLEIVEVLLKY 135
Query: 188 SCCKNIED---KSPLSLAIEMGNTDVLEYILRSL 218
N +D K+ ++I+ GN D+ E IL+ L
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAE-ILQKL 168
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG + P+HLA GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK--NGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ D+ G LH AA GH ++V+ +++ G + VN D +G TPLHLAA G
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGAD------VNANDHNGFTPLHLAANIG 124
Query: 346 HSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
H ++V LL++G ++ + ++K G TA+ +++
Sbjct: 125 HLEIVEVLLKHG-ADVNAQDKFGKTAFDISI 154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK 255
+PL LA G+ +++E +L++ S G +PL +A + +L V +L NG
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 256 KNKETLYPIHLACKNGHANVMVELLK 281
+ P+HLA GH ++ LLK
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AA GH EI + + +N ++ G TPLH AA G L L+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLL 100
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKA 312
A + ++++ +H AC GH + VE L + P D G + LH AA G ++VKA
Sbjct: 33 ATRTDQDSRTALHWACSAGHTEI-VEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKA 91
Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY 372
++ + G + VN ++++G TPLH AA ++ LL G +NPD K+ TA
Sbjct: 92 LL-VKGAH------VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAM 143
Query: 373 KMA 375
A
Sbjct: 144 HRA 146
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
D L+ + + ++ L A G+T+++E++L+ +P +G SPL +A +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
L V G N+ P+H A + V LL+ P D+ +H A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
A G+ MV ++ + N D +GNTPLHLA + L+ G S
Sbjct: 147 AAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-I 198
Query: 362 DLKNKQGMTAYKMALREY-YMQTSIAEKQEKSM 393
++NK+ T ++A + +AE +E SM
Sbjct: 199 YIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 33/201 (16%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
D + LH A +GH EI + Q +N ++ G +PLH AA AG+ AL+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 101 HIPSTSQ---APVDLLRMENAMGNTALHEALFML--GRVN----------VWRTSIAGSS 145
H+ + +Q P+ +N HE ML G N + A +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNR------HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 146 LTMAHSYFLSNPTLAIDDTIKTNIIN-----SLVAIAYFLVSLDPKLSCCKNIEDKSPLS 200
L M H + I DT ++ V A FLV+ + +N E+K+PL
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQ 210
Query: 201 LAIEMGNTDVLEYILRSLPSG 221
+A L IL+ L G
Sbjct: 211 VA-----KGGLGLILKRLAEG 226
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKA 312
A + ++++ +H AC GH + VE L + P D G + LH AA G ++VKA
Sbjct: 33 ATRTDQDSRTALHWACSAGHTEI-VEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91
Query: 313 IIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY 372
++ + G + VN ++++G TPLH AA ++ LL G +NPD K+ TA
Sbjct: 92 LL-VKGAH------VNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDATAM 143
Query: 373 KMA 375
A
Sbjct: 144 HRA 146
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 13/213 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
D L+ + + ++ L A G+T+++E++L+ +P +G SPL +A +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
L V G N+ P+H A + V LL+ P D+ +H A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
A G+ MV ++ + N D +GNTPLHLA + L+ G S
Sbjct: 147 AAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-I 198
Query: 362 DLKNKQGMTAYKMALREY-YMQTSIAEKQEKSM 393
++NK+ T ++A + +AE +E SM
Sbjct: 199 YIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 78/201 (38%), Gaps = 33/201 (16%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
D + LH A +GH EI + Q +N ++ G +PLH AA AG AL+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 101 HIPSTSQ---APVDLLRMENAMGNTALHEALFML--GRVN----------VWRTSIAGSS 145
H+ + +Q P+ +N HE ML G N + A +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNR------HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 146 LTMAHSYFLSNPTLAIDDTIKTNIIN-----SLVAIAYFLVSLDPKLSCCKNIEDKSPLS 200
L M H + I DT ++ V A FLV+ + +N E+K+PL
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY-IENKEEKTPLQ 210
Query: 201 LAIEMGNTDVLEYILRSLPSG 221
+A L IL+ L G
Sbjct: 211 VA-----KGGLGLILKRLAEG 226
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+H A + GH +++V+L+K PSL + GC+ +H AA+ GH +V +I G ++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIA-KGQDVD 136
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHS 347
M MD++G TPL AA HS
Sbjct: 137 M------MDQNGMTPLMWAAYRTHS 155
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 244 YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK 303
++ ++ YS K T Y I+ C+ +VE + R P +LH+AA
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRE-----LVEAGYDVRQPD----KENVTLLHWAAI 51
Query: 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLAALHGHSQVVYALLRYGRSNPD 362
N D+VK I + +V+++ D N TPLH A GH +V L++YG ++P
Sbjct: 52 NNRIDLVKYYI-------SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPS 103
Query: 363 LKNKQGMTAYKMALREYYMQTSI 385
L + +G + +A + + TSI
Sbjct: 104 LIDGEGCSCIHLAAQ--FGHTSI 124
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI----L 298
C L GY + +KE + +H A N ++L+K + V G ++ L
Sbjct: 25 CRELVEAGYDVRQPDKENVTLLHWAAINNR----IDLVKYYISKGAIVDQLGGDLNSTPL 80
Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR 358
H+A + GH MV +++ G + ++ +D +G + +HLAA GH+ +V L+ G+
Sbjct: 81 HWATRQGHLSMVVQLMKY-GADPSL------IDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 359 SNPDLKNKQGMT 370
+ D+ ++ GMT
Sbjct: 134 -DVDMMDQNGMT 144
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSL 288
+PL AT++ +L + L G + E IHLA + GH +++ L+ + + +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLAALHGHS 347
+ NG L +AA H+ ++ +T + VN D+ NT LH A L G++
Sbjct: 138 -MDQNGMTPLMWAAYRTHS------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 348 QVVYALLRYGRSNPDLKNKQGMTAYKMA 375
V+ LL G +N D +N +G +A +A
Sbjct: 191 TVISLLLEAG-ANVDAQNIKGESALDLA 217
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
++ G SPL VA + LL +G +A +N + P+HLAC+ GH V+ LL
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341
P+ +G L +A GH ++V +++ + +N + GNT LH A
Sbjct: 141 SNAKPNKKDL-SGNTPLIYACSGGHHELVALLLQHGAS-------INASNNKGNTALHEA 192
Query: 342 ALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
+ H VV LL +G S L NK+ TA A
Sbjct: 193 VIEKHVFVVELLLLHGASVQVL-NKRQRTAVDCA 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+H+A +G A+++ LLK D LH A + GH +VK +++
Sbjct: 89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVP-LHLACQQGHFQVVKCLLD------- 140
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM 381
+ NK D GNTPL A GH ++V LL++G S + N +G TA A+ E ++
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHV 198
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 311 KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
K + ++P + + VN +DG++PLH+AALHG + ++ LL++G +N +N
Sbjct: 67 KRLAKVPASGLG----VNVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAV 121
Query: 371 AYKMALREYYMQT 383
+A ++ + Q
Sbjct: 122 PLHLACQQGHFQV 134
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 35/117 (29%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGD------TPLHCAARAGKLNTATA 94
DGSS LHVAA G ++ P L+ N G PLH A + G
Sbjct: 85 DGSSPLHVAALHGRADL-------IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 95 LVD---------FAKHIP---STSQAPVDLLRM----------ENAMGNTALHEALF 129
L+D + + P + S +L+ + N GNTALHEA+
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D G LH AAK GH ++V+ +++ G + VN D G TPLHLAA GH ++V
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNASDSWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
LL YG ++ + ++K G TA+ +++
Sbjct: 98 VLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN MD+ G TPLHLAA GH ++V LL++G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AAK GH EI + ++ +N +++ G TPLH AA G L L+++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 102 IPSTSQ 107
+ + +
Sbjct: 106 VNAQDK 111
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ AT+ +L NG + + P+HLA K GH ++ LLK
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ +D+ G LH AA GH ++V+ ++E VN D+ G T ++ +G
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD-------VNAQDKFGKTAFDISIDNG 124
Query: 346 HSQVVYALLR 355
+ + L +
Sbjct: 125 NEDLAEILQK 134
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
+G +PL +A K+ +L + +L +G + P+HLA GH + VE+L E+
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEI-VEVLLEYG 103
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVK 311
G + NG+ D+ +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAE 130
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D G LH AAK GH ++V+ +++ G + VN D G TPLHLAA GH ++V
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNARDIWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
LL YG ++ + ++K G TA+ +++
Sbjct: 98 VLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN MD+ G TPLHLAA GH ++V LL++G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AAK GH EI + ++ +N + G TPLH AA G L L+++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 102 IPSTSQ 107
+ + +
Sbjct: 106 VNAQDK 111
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK---EW 283
GK L+ AT+ +L NG + + P+HLA K GH ++ LLK +
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 284 RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343
++ G LH AA GH ++V+ ++E VN D+ G T ++
Sbjct: 74 NARDIW----GRTPLHLAATVGHLEIVEVLLEYGAD-------VNAQDKFGKTAFDISID 122
Query: 344 HGHSQVVYAL 353
+G+ + L
Sbjct: 123 NGNEDLAEIL 132
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
+G +PL +A K+ +L + +L +G ++ P+HLA GH + VE+L E+
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEI-VEVLLEYG 103
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVK 311
G + NG+ D+ +
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAE 130
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D G LH AAK GH ++V+ +++ G + VN D G TPLHLAA GH ++V
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLK-HGAD------VNASDIWGRTPLHLAATVGHLEIVE 97
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMAL 376
LL YG ++ + ++K G TA+ +++
Sbjct: 98 VLLEYG-ADVNAQDKFGKTAFDISI 121
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
VN MD+ G TPLHLAA GH ++V LL++G
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G + LH+AAK GH EI + ++ +N ++ G TPLH AA G L L+++
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 102 IPSTSQ 107
+ + +
Sbjct: 106 VNAQDK 111
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ AT+ +L NG + + P+HLA K GH ++ LLK
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ +D G LH AA GH ++V+ ++E VN D+ G T ++ +G
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD-------VNAQDKFGKTAFDISIDNG 124
Query: 346 HSQVVYALLR 355
+ + L +
Sbjct: 125 NEDLAEILQK 134
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
P+H AC+ G + V+ L+ R + V + G + LH AA +GH D+V+ +++
Sbjct: 42 PLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 97
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+N ++E GN PLH A G QV L+ G
Sbjct: 98 -----INAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D+G + LH+A + G + +V+ +I + G +N M+ +TPLHLAA HGH +V
Sbjct: 37 DHGFSPLHWACREGRSAVVEMLI-MRGAR------INVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387
LL+Y +++ + N+ G A ++ Q +AE
Sbjct: 90 KLLQY-KADINAVNEHGNVPLHYAC--FWGQDQVAE 122
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G S LH A + G + + IN N DTPLH AA G + L+ +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALF 129
I + N GN LH A F
Sbjct: 98 INAV-----------NEHGNVPLHYACF 114
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
+ ++G LH AA+ GH ++V+ +++ VN D G TPLHLAA+ GH ++
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGAD-------VNAEDNFGITPLHLAAIRGHLEI 95
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMAL 376
V LL++G ++ + ++K G TA+ +++
Sbjct: 96 VEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+ G D V+ I+ G + VN +DEDG TPLHLAA GH ++V LL+YG ++
Sbjct: 21 AARAGQDDEVR-ILMANGAD------VNALDEDGLTPLHLAAQLGHLEIVEVLLKYG-AD 72
Query: 361 PDLKNKQGMTAYKMA 375
+ ++ G+T +A
Sbjct: 73 VNAEDNFGITPLHLA 87
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG +++ L P+HLA + GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK--YGA 71
Query: 287 SLFVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ DN G LH AA GH ++V+ +++ G + VN D+ G T ++ +G
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGAD------VNAQDKFGKTAFDISIDNG 124
Query: 346 HSQVVYAL 353
+ + L
Sbjct: 125 NEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
P+H AC+ G + V+ L+ R + V + G + LH AA +GH D+V+ +++
Sbjct: 37 PLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-- 92
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+N ++E GN PLH A G QV L+ G
Sbjct: 93 -----INAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D+G + LH+A + G + +V+ +I + G +N M+ +TPLHLAA HGH +V
Sbjct: 32 DHGFSPLHWACREGRSAVVEMLI-MRGAR------INVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387
LL+Y +++ + N+ G A ++ Q +AE
Sbjct: 85 KLLQY-KADINAVNEHGNVPLHYAC--FWGQDQVAE 117
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G S LH A + G + + IN N DTPLH AA G + L+ +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT 147
I + N GN LH A F G+ V +A +L
Sbjct: 93 INAV-----------NEHGNVPLHYACF-WGQDQVAEDLVANGALV 126
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA H ++V+ +++ G + VN D DG+TPLHLAAL GH ++V L
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLK-HGAD------VNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
L++G ++ + ++K G TA+ +++
Sbjct: 100 LKHG-ADVNAQDKFGKTAFDISI 121
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
AA+ G D V+ + M VN D GNTPLHLAA + H ++V LL++G
Sbjct: 21 AARAGQDDEVRIL-------MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G++ LH+AA H EI + ++ +N +N G TPLH AA G L L+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG +++ P+HLA H ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIE 315
+ D G LH AA GH ++V+ +++
Sbjct: 74 NAHDND-GSTPLHLAALFGHLEIVEVLLK 101
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G ++H AA+ G D ++ ++E VN D +GN PLHLAA GH +VV L
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
+++ SN +N +G TA +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G++ LQV K N + L + G + K++ IH A + G + + LL E++
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLL-EFQA- 94
Query: 287 SLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ + DN N+ LH AAK GH +V+ +++ +N V + G+T LA L+G
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYG 148
Query: 346 HSQVV 350
++VV
Sbjct: 149 RNEVV 153
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G +++H AA++G + + ++ +N +N+G+ PLH AA+ G L LV KH
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KH 125
Query: 102 IPS 104
S
Sbjct: 126 TAS 128
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA N H ++V+ +++ G + VN +D G TPLHL A++GH ++V L
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLK-NGAD------VNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
L++G ++ + ++K G TA+ +++
Sbjct: 100 LKHG-ADVNAQDKFGKTAFDISI 121
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
AA+ G D V+ I+ G + VN D+ G TPLHLAA++ H ++V LL+ G
Sbjct: 21 AARAGQDDEVR-ILMANGAD------VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G ++H AA+ G D ++ ++E VN D +GN PLHLAA GH +VV L
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
+++ SN +N +G TA +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G++ LQV K N + L + G + K++ IH A + G + + LL E++
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQA- 94
Query: 287 SLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ + DN N+ LH AAK GH +V+ +++ +N V + G+T LA L+G
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYG 148
Query: 346 HSQVV 350
++VV
Sbjct: 149 RNEVV 153
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G +++H AA++G + + ++ +N +N+G+ PLH AA+ G L LV KH
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KH 125
Query: 102 IPS 104
S
Sbjct: 126 TAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G ++H AA+ G D ++ ++E VN D +GN PLHLAA GH +VV L
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
+++ SN +N +G TA +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G++ LQV K N + L + G + K++ IH A + G + + LL E++
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQA- 94
Query: 287 SLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ + DN N+ LH AAK GH +V+ +++ +N V + G+T LA L+G
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYG 148
Query: 346 HSQVV 350
++VV
Sbjct: 149 RNEVV 153
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G +++H AA++G + + ++ +N +N+G+ PLH AA+ G L LV KH
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KH 125
Query: 102 IPS 104
S
Sbjct: 126 TAS 128
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G ++H AA+ G D ++ ++E VN D +GN PLHLAA GH +VV L
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
+++ SN +N +G TA +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G++ LQV K N + L + G + K++ IH A + G + + LL E++
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLL-EFQA- 94
Query: 287 SLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ + DN N+ LH AAK GH +V+ +++ +N V + G+T LA L+G
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYG 148
Query: 346 HSQVV 350
++VV
Sbjct: 149 RNEVV 153
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G++++H AA++G + + ++ +N +N+G+ PLH AA+ G L LV KH
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KH 125
Query: 102 IPS 104
S
Sbjct: 126 TAS 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G ++H AA+ G D ++ ++E VN D +GN PLHLAA GH +VV L
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 354 LRYGRSNPDLKNKQGMTAYKMA 375
+++ SN +N +G TA +A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
G++ LQV K N + L + G + K++ IH A + G + + LL+
Sbjct: 38 GRTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQ--A 94
Query: 287 SLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
+ + DN N+ LH AAK GH +V+ +++ +N V + G+T LA L+G
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYG 148
Query: 346 HSQVV 350
++VV
Sbjct: 149 RNEVV 153
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101
G +++H AA++G + + + +N +N+G+ PLH AA+ G L LV KH
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV---KH 125
Query: 102 IPS 104
S
Sbjct: 126 TAS 128
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+H A K G+ + + E L R + G L++A GH D+V+ + P +
Sbjct: 76 PLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL- 133
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
N+ ++ G+T LH AA G++ +V LL G + DL+N + A+ A
Sbjct: 134 -----NQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDXA 180
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 3 EVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIA 62
E +D EAA RGN+ +L + + + +K GS+ L+ A GH +I +
Sbjct: 71 ESIDNPLHEAAKRGNLS-WLRECLDNRVGVNGLDKA---GSTALYWACHGGHKDIVEXLF 126
Query: 63 QYYPFLINKTNNQGDTPLHCAARAG 87
+N+ N GDT LH AA G
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKG 151
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 286 PSLFVTDNGCNI---LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA 342
PS +V + +I LH AAK G+ ++ ++ N VN +D+ G+T L+ A
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD----NRVG---VNGLDKAGSTALYWAC 114
Query: 343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380
GH +V L + +NK G TA A + Y
Sbjct: 115 HGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGY 152
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
LH AA+ H D+++ ++ G M N +D G T LH AAL GH Q LL YG
Sbjct: 251 LHVAAERAHNDVME-VLHKHGAKM------NALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 358 RSNPDLKNKQGMTAYKMA 375
S+P + + QG TA +M
Sbjct: 304 -SDPSIISLQGFTAAQMG 320
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 69/189 (36%), Gaps = 48/189 (25%)
Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGK--SPLQVATKKRNLGVCYLLEVNGYSA 253
K L A GN + L +L L S G+ +PL +A + + LL +G
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
K+K L P+H AC GH V LLK C
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---------------------------- 116
Query: 314 IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
VN MD TPLH AA +V LL +G ++P L N G +A
Sbjct: 117 -------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVD 162
Query: 374 MA----LRE 378
MA LRE
Sbjct: 163 MAPTPELRE 171
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 46 LHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
LHVAA+ H ++ ++ + +N ++ G T LH AA AG L T L+ +
Sbjct: 251 LHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383
VN+ ++D TPLH+AA H+ V+ L ++G L + G TA A ++QT
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL-DSLGQTALHRAALAGHLQT 295
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+ G D V+ + M VN D+DG TPLHLAA GH ++V LL+ G ++
Sbjct: 9 AARAGQDDEVRIL-------MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-AD 60
Query: 361 PDLKNKQGMTAYKMAL 376
+ ++K G TA+ +++
Sbjct: 61 VNAQDKFGKTAFDISI 76
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
GK L+ A ++ V +L NG K+K+ P+HLA + GH ++ LLK
Sbjct: 3 GKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSG-KSPLQVATKKRNL-GVCYLLEVNGYSA 253
+SPL A E G+ D+ ++++ + + S ++PL A + +L V YL++ G
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALV 70
Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
K+ E +HLA K GH V+ LL + D G + +A + H D+VK +
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 314 IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373
+ G++ +N D + N LH AA G + LL + + N G +
Sbjct: 131 LS-KGSD------INIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLH 182
Query: 374 MALRE 378
+A RE
Sbjct: 183 IAARE 187
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 171 NSLVAIAYFLVS---LDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSS- 226
N L A+ Y + + +DPK + E + L LA + G+ +V++Y+L + ++
Sbjct: 55 NHLEAVKYLIKAGALVDPK-----DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
Query: 227 -GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
G +P+ AT+ +++ + LL G ++ E +H A +G ++ E+L +C
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI-AEILLAAKC 168
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345
V +G + LH AA+ D V ++ D V +++G TPL A+L
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLF-------LSRDSDVTLKNKEGETPLQCASL-- 219
Query: 346 HSQVVYAL 353
+SQV AL
Sbjct: 220 NSQVWSAL 227
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE 315
+NK + P+H A + GH ++ L++ D ++ AA+N H + VK +I+
Sbjct: 9 QNKRS--PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME-AAENNHLEAVKYLIK 65
Query: 316 IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
+V+ D +G+T LHLAA GH +VV LL G+ + + ++ G T
Sbjct: 66 AGA-------LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 40 TDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPL 80
+GS+ LH+AAK GH E+ + +N ++ G TP+
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
G + +ELLK+ P++ T +G + +H AA+ G D +K ++E G + VN
Sbjct: 52 GSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVE-HGAD------VNVP 103
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
D G P+HLA GH+ VV L S+ ++ +G+T ++AL+
Sbjct: 104 DGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQR 149
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 206 GNTDV-LEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPI 264
G+T + LE + + + +SG SP+ A + L +L +G + PI
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 265 HLACKNGHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMV 310
HLA + GH V+ L E L D G L A + G D+V
Sbjct: 112 HLAVQEGHTAVVSFLAAES---DLHRRDARGLTPLELALQRGAQDLV 155
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
G + +ELLK+ P++ T +G + +H AA+ G D +K ++E G + VN
Sbjct: 46 GSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVE-HGAD------VNVP 97
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
D G P+HLA GH+ VV L S+ ++ +G+T ++AL+
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQR 143
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 205 MGNTDV-LEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYP 263
G+T + LE + + + +SG SP+ A + L +L +G + P
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 264 IHLACKNGHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMV 310
IHLA + GH V+ L E L D G L A + G D+V
Sbjct: 105 IHLAVQEGHTAVVSFLAAES---DLHRRDARGLTPLELALQRGAQDLV 149
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 271 GHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329
G V +ELLK+ P+ V D +G + +H AA+ G D +K ++E G + VN
Sbjct: 52 GSPAVALELLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVE-HGAD------VNA 102
Query: 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
+D G+ P+HLA GHS VV L S+ ++ G+T ++A
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELA 146
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 211 LEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270
LE + + + +SG SP+ A + L +L +G + PIHLA +
Sbjct: 58 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 271 GHANVMVELLKE 282
GH++V+ L E
Sbjct: 118 GHSSVVSFLAPE 129
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 12/106 (11%)
Query: 271 GHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329
G V +ELLK+ P+ V D +G + +H AA+ G D +K ++E G + VN
Sbjct: 54 GSPAVALELLKQGASPN--VQDASGTSPVHDAARTGFLDTLKVLVE-HGAD------VNA 104
Query: 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
+D G+ P+HLA GHS VV L S+ ++ G+T ++A
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTPLELA 148
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 211 LEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270
LE + + + +SG SP+ A + L +L +G + PIHLA +
Sbjct: 60 LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 119
Query: 271 GHANVMVELLKE 282
GH++V+ L E
Sbjct: 120 GHSSVVSFLAPE 131
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 227 GKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRC 285
G++ L +A+ K ++ V YLL+ NG K+ P+H AC +GH V VELL + +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKV-VELLLQHKA 67
Query: 286 PSLFVTDNGCNILHFAAKNGHADMVKAII 314
+ LH AAKNGH D+VK ++
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMVKAIIEIP 317
ETL +H+A G + LL+ P+ V D+ G LH A +GH +V+ +++
Sbjct: 11 ETL--LHIASIKGDIPSVEYLLQNGSDPN--VKDHAGWTPLHEACNHGHLKVVELLLQ-- 64
Query: 318 GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
+VN ++PLH AA +GH +V LL YG S
Sbjct: 65 -----HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
G + LH A GH ++ + Q+ L+N T Q D+PLH AA+ G ++ L+ +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
D L+ + + ++ L A G+T+++E++L+ +P +G SPL +A +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
L G N+ P+H A + V LL+ P D+ +H A
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRA 146
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
A G+ M+ ++ + N D +GNTPLHLA + L+ G S
Sbjct: 147 AAKGNLKMIHILLYYKAS-------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-I 198
Query: 362 DLKNKQGMTAYKMA 375
++NK+ T ++A
Sbjct: 199 YIENKEEKTPLQVA 212
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
D + LH A +GH EI + Q +N ++ G +PLH AA AG+ AL+
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 101 HIPSTSQ 107
+ + +Q
Sbjct: 98 QVNAVNQ 104
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Query: 184 DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILR-SLPSGISWSSGKSPLQVATKKRNLGV 242
D L+ + + ++ L A G+T+++E++L+ +P +G SPL +A +
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 243 CYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILHFA 301
L G N+ P+H A + V LL+ P D+ +H A
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRA 147
Query: 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341
A G+ M+ ++ + N D +GNTPLHLA
Sbjct: 148 AAKGNLKMIHILLYYKAS-------TNIQDTEGNTPLHLA 180
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 298 LHFAAKNGHADMVKAIIE--IPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355
LH+A GH ++V+ +++ +P VN D+ G +PLH+AA G ++V ALL
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVP---------VNDKDDAGWSPLHIAASAGRDEIVKALLG 95
Query: 356 YGRSNPDLKNKQGMT 370
G + + N+ G T
Sbjct: 96 KG-AQVNAVNQNGCT 109
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAK 100
D + LH A +GH EI + Q +N ++ G +PLH AA AG+ AL+
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 101 HIPSTSQ 107
+ + +Q
Sbjct: 99 QVNAVNQ 105
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+ + D+D T LH A GH+++V LL+ G
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 64
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 43/150 (28%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCP 286
GK L+ A ++ V L+ NG K++ L P++LA +GH ++ LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK----- 68
Query: 287 SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346
NG + VN +D G TPLHLAA GH
Sbjct: 69 ------NGAD------------------------------VNAVDAIGFTPLHLAAFIGH 92
Query: 347 SQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
++ LL++G ++ + ++K G TA+ +++
Sbjct: 93 LEIAEVLLKHG-ADVNAQDKFGKTAFDISI 121
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
+D G +L AA+ G D V+ + M VN DE G TPL+LA HGH ++V
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRIL-------MANGADVNAKDEYGLTPLYLATAHGHLEIV 63
Query: 351 YALLRYG 357
LL+ G
Sbjct: 64 EVLLKNG 70
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH+AA+ + +VK ++ G+N +K DEDG TP+ LAA G +VV L
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNK------DKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 354 LRYGRS 359
++ G S
Sbjct: 333 IQQGAS 338
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 60/155 (38%), Gaps = 10/155 (6%)
Query: 231 LQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF- 289
L V ++R L V YL + G NK +H A N V L +
Sbjct: 172 LAVLARRRRL-VAYLXKA-GADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIE 229
Query: 290 -VTDNGCNILHFAAKNGHADMV---KAIIEIPGTNMTMDEVVNKMDED--GNTPLHLAAL 343
+ NG L A N D V K ++E G + D K E G T LH AA
Sbjct: 230 ELDRNGXTALXIVAHNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQ 288
Query: 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
+ +V L+ SN D +++ G T +A +E
Sbjct: 289 VSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQE 323
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G L A +G D+VKA++ VN D+DG+T L A HGH ++ L
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD-------VNVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 354 LRYGRSNPDLKNKQGMTAYKMAL 376
L + L ++ G TA +AL
Sbjct: 236 LAVPSCDISLTDRDGSTALMVAL 258
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQG 368
+D VVN D +GNT LH + H + VV LL G D +N+ G
Sbjct: 100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG 145
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
D+G L A ++GH ++ ++ +P ++++ D DG+T L +A G S++
Sbjct: 214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISL------TDRDGSTALMVALDAGQSEIAS 267
Query: 352 ALLRYGRSN 360
L Y R N
Sbjct: 268 ML--YSRMN 274
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATAL 95
DGS+ L A + GH EI + I+ T+ G T L A AG+ A+ L
Sbjct: 215 DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
G +++ ++ E PSL D G LH A GH ++VK +++ G N VN
Sbjct: 48 GEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQF-GVN------VNAA 99
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYG 357
D DG TPLH AA + QV L+ G
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH A +GH EI + Q+ +N ++ G TPLHCAA + LV+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
LH AA GH ++V+ +++ G + VN G TPLHLAA H ++V LL++G
Sbjct: 51 LHLAAMLGHLEIVEVLLK-NGAD------VNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Query: 358 RSNPDLKNKQGMTAYKMAL 376
++ + ++K G TA+ +++
Sbjct: 104 -ADVNAQDKFGKTAFDISI 121
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
AA+ G D V+ I+ G + VN D G+TPLHLAA+ GH ++V LL+ G
Sbjct: 21 AARAGQDDEVR-ILTANGAD------VNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
G + LH+AA GH EI + + +N T N G TPLH AA A L L+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAWADHLEIVEVLL 100
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330
G +++ ++ E PSL D G LH A GH ++VK +++ G N VN
Sbjct: 48 GEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQF-GVN------VNAA 99
Query: 331 DEDGNTPLHLAALHGHSQVVYALLRYG 357
D DG TPLH AA + QV L+ G
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
+G + LH A +GH EI + Q+ +N ++ G TPLHCAA + LV+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+HLA + GH + E+L T LH AA GHA++V+ +++ G +
Sbjct: 37 PLHLAAQYGHFST-TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK-HGAD-- 92
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
VN D T LH A H H +VV L++YG ++ ++K TA+ +++
Sbjct: 93 ----VNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISI 141
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 289 FVTDN-GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347
F TD G + LH AA+ GH + ++ G + V++ TPLH+AA GH+
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDR------TPLHMAASEGHA 80
Query: 348 QVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
+V LL++G ++ + K+ MTA A + +
Sbjct: 81 NIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQE 114
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 197 SPLSLAIEMGNTDVLEYILRSLPSGISWSS----GKSPLQVATKKRNLGVCYLLEVNGYS 252
SPL LA + G+ E +LR +G+S + ++PL +A + + + +L +G
Sbjct: 36 SPLHLAAQYGHFSTTEVLLR---AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 253 ALKKNKETLYPIHLACKNGHANVMVELL 280
K+ + +H A ++ H V VELL
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEV-VELL 119
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360
AA+ G D V+ + M V D++G+TPLHLAA +GH +VV LL G ++
Sbjct: 13 AARAGQDDEVRIL-------MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-AD 64
Query: 361 PDLKNKQGMTAYKMAL 376
+ ++K G TA+ +++
Sbjct: 65 VNAQDKFGKTAFDISI 80
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
GK L+ A ++ V +L NG K+K P+HLA +NGH V+ LL+
Sbjct: 7 GKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 291 TDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350
+D G +L AA+ G D V+ + M V D++G+TPLHLAA +GH +VV
Sbjct: 22 SDLGKKLLE-AARAGQDDEVRIL-------MANGADVAAKDKNGSTPLHLAARNGHLEVV 73
Query: 351 YALLRYGRSNPDLKNKQGMTAYKMAL 376
LL G ++ ++K G TA+ +++
Sbjct: 74 KLLLEAG-ADVXAQDKFGKTAFDISI 98
Score = 31.2 bits (69), Expect = 0.92, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281
GK L+ A ++ V +L NG K+K P+HLA +NGH V+ LL+
Sbjct: 25 GKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
V DN ++L A +N D+V+ ++E G N+ E +E G TPLH A +
Sbjct: 3 VEDN--HLLIKAVQNEDVDLVQQLLE-GGANVNFQE-----EEGGWTPLHNAVQMSREDI 54
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMA 375
V LLR+G ++P L+ K G T + +A
Sbjct: 55 VELLLRHG-ADPVLRKKNGATPFLLA 79
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
V DN ++L A +N D+V+ ++E G N+ E +E G TPLH A +
Sbjct: 23 VEDN--HLLIKAVQNEDVDLVQQLLE-GGANVNFQE-----EEGGWTPLHNAVQMSREDI 74
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMA 375
V LLR+G ++P L+ K G T + +A
Sbjct: 75 VELLLRHG-ADPVLRKKNGATPFILA 99
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
T + + V+N DE+G TPL AA HG VV LL+ G ++P L K +A +A +
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK 79
Query: 379 YY 380
Y
Sbjct: 80 GY 81
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
++E P+ A +G V+ LL+ P L + L A G+ D+VK +++
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKMLLDC 91
Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
G + VN+ D +G TPL L A+HG H + V LL G ++P ++ G + +A
Sbjct: 92 -GVD------VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLA 142
Query: 376 L 376
+
Sbjct: 143 V 143
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
T + + V+N DE+G TPL AA HG VV LL+ G ++P L K +A +A +
Sbjct: 19 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK 77
Query: 379 YY 380
Y
Sbjct: 78 GY 79
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
++E P+ A +G V+ LL+ P L + L A G+ D+VK +++
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKMLLDC 89
Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
G + VN+ D +G TPL L A+HG H + V LL G ++P ++ G + +A
Sbjct: 90 -GVD------VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLA 140
Query: 376 L 376
+
Sbjct: 141 V 141
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
T + + V+N DE+G TPL AA HG VV LL+ G ++P L K +A +A +
Sbjct: 37 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK 95
Query: 379 YY 380
Y
Sbjct: 96 GY 97
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316
++E P+ A +G V+ LL+ P L + L A G+ D+VK +++
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE-SALSLACSKGYTDIVKMLLDC 107
Query: 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
G + VN+ D +G TPL L A+HG H + V LL G ++P ++ G + +A
Sbjct: 108 -GVD------VNEYDWNGGTPL-LYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLA 158
Query: 376 L 376
+
Sbjct: 159 V 159
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNM 321
P+ +AC G N + +L++ + L D G L +A KN + + ++ G+N
Sbjct: 38 PLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSN- 93
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM 381
VN D G TPL + + G+S++ Y LL +G +N + +N +G T +A + Y
Sbjct: 94 -----VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASK--YG 145
Query: 382 QTSIAEK 388
++ I +K
Sbjct: 146 RSEIVKK 152
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 54 HGEITAKIA------QYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQ 107
+GEI KI Q FL N ++ TPL A G N LV+
Sbjct: 7 NGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE---------- 56
Query: 108 APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD-TIK 166
D L ++ G+TAL +W ++ + L +A + D + K
Sbjct: 57 -NFDKLEDKDIEGSTAL-----------IW--AVKNNRLGIAEKLLSKGSNVNTKDFSGK 102
Query: 167 TNIINSLV----AIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL 215
T ++ S++ ++YFL+ ++ +N+E ++PL +A + G +++++ +L
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLL 154
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-RSLPSGISWSSGK 228
I+ V + FLV ++ N E PL A G D+ EY++ + G S G
Sbjct: 82 IDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHL-ACKNGHANVMVELLKEWRCPS 287
+PL +A ++ L +N+ + + A + +M+ ++W S
Sbjct: 141 TPLDIAEEEA------------MEELLQNEVNRQGVDIEAARKEEERIMLRDARQW-LNS 187
Query: 288 LFVTD-----NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAA 342
+ D +G LH AA G+ +++K +I+ VN D DG TPLH AA
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-------VNIKDYDGWTPLHAAA 240
Query: 343 LHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375
G + L+ + + NK G TA+ +A
Sbjct: 241 HWGKEEACRILVE-NLCDMEAVNKVGQTAFDVA 272
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 ACKNGHANVMVELLKEWRCPSL-FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDE 325
AC +G ++ LL+ R + + +G LH A + + DMVK ++E G N
Sbjct: 47 ACSSGDTEEVLRLLE--RGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGAN----- 98
Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+N+ D +G PLH AA G+ + L+ G
Sbjct: 99 -INQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVD 97
G + LHVAA G+ E+ + Q + +N + G TPLH AA GK LV+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIP---STSQAPVDL 112
IN+ +N+G PLH AA G L+ A L+ H+ S P+D+
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVT--DNGCNILHFAAKNGHADMVKAIIEIPGT 319
YP+H AC + ELL PSL + +G LH++ + A + + +
Sbjct: 4 YPLHQACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKME 60
Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS-NPDLKN--KQGMTAYKMAL 376
N+ +D+ D+ G TP H+A G+ +VV +L Y R PDL QG+T +A+
Sbjct: 61 NVNLDDYP---DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAV 115
Query: 377 REYYMQTS 384
+ + + S
Sbjct: 116 GKKWFEVS 123
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 40/150 (26%)
Query: 263 PIHLACKNGHANVMVELL------------------------KEWRCPSLFVTDNGCNI- 297
P H+AC G+ V+ L K+W S F+ +NG ++
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 298 ---------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
LH AA G +++ + + + VN D+ G TPL A GH
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKS------AVNWQDKQGWTPLFHALAEGHGD 188
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
L+ + DL + +G A +AL E
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVT--DNGCNILHFAAKNGHADMVKAIIEIPGT 319
YP+H AC + ELL PSL + +G LH++ + A + + +
Sbjct: 4 YPLHQACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKME 60
Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS-NPDLKN--KQGMTAYKMAL 376
N+ +D+ D+ G TP H+A G+ +VV +L Y R PDL QG+T +A+
Sbjct: 61 NVNLDDYP---DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAV 115
Query: 377 REYYMQTS 384
+ + + S
Sbjct: 116 GKKWFEVS 123
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 40/150 (26%)
Query: 263 PIHLACKNGHANVMVELL------------------------KEWRCPSLFVTDNGCNI- 297
P H+AC G+ V+ L K+W S F+ +NG ++
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 298 ---------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
LH AA G +++ + + + VN D+ G TPL A GH
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKS------AVNWQDKQGWTPLFHALAEGHGD 188
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
L+ + DL + +G A +AL E
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 262 YPIHLACKNGHANVMVELLKEWRCPSLFVT--DNGCNILHFAAKNGHADMVKAIIEIPGT 319
YP+H AC + ELL PSL + +G LH++ + A + + +
Sbjct: 4 YPLHQACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKME 60
Query: 320 NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS-NPDLKN--KQGMTAYKMAL 376
N+ +D+ D+ G TP H+A G+ +VV +L Y R PDL QG+T +A+
Sbjct: 61 NVNLDDYP---DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAV 115
Query: 377 REYYMQTS 384
+ + + S
Sbjct: 116 GKKWFEVS 123
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 40/150 (26%)
Query: 263 PIHLACKNGHANVMVELL------------------------KEWRCPSLFVTDNGCNI- 297
P H+AC G+ V+ L K+W S F+ +NG ++
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 298 ---------LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
LH AA G +++ + + + VN D+ G TPL A GH
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKS------AVNWQDKQGWTPLFHALAEGHGD 188
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALRE 378
L+ + DL + +G A +AL E
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE------ 282
+PL A + V L +G K+K L P+H AC GH V L+K
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 283 ---WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
W+ F LH AA G ++ K +++ G + T K + DGNTPL
Sbjct: 106 ADLWK----FTP------LHEAAAKGKYEICKLLLQ-HGADPT------KKNRDGNTPLD 148
Query: 340 L 340
L
Sbjct: 149 L 149
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
P+H A +V+ LL+ + D G + LH A GH ++ + +++
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVK------ 98
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
VVN D TPLH AA G ++ LL++G ++P KN+ G T
Sbjct: 99 -HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNT 145
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG--NTPLHLAALHGHSQVVYALLRYGR 358
AAK G + VK + + + VN D +G +TPLH AA + VV LL++G
Sbjct: 17 AAKAGDVETVKKLCTV--------QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG- 67
Query: 359 SNPDLKNKQGMT 370
++ K+K G+
Sbjct: 68 ADVHAKDKGGLV 79
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE------ 282
+PL A + V L +G K+K L P+H AC GH V L+K
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 283 ---WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
W+ LH AA G ++ K +++ G + T K + DGNTPL
Sbjct: 104 ADLWKFTP----------LHEAAAKGKYEICKLLLQ-HGADPT------KKNRDGNTPLD 146
Query: 340 L 340
L
Sbjct: 147 L 147
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNM 321
P+H A +V+ LL+ + D G + LH A GH ++ + +++
Sbjct: 45 PLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVK------ 96
Query: 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
VVN D TPLH AA G ++ LL++G ++P KN+ G T
Sbjct: 97 -HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNT 143
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG--NTPLHLAALHGHSQVVYALLRYGR 358
AAK G + VK + + + VN D +G +TPLH AA + VV LL++G
Sbjct: 15 AAKAGDVETVKKLCTV--------QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG- 65
Query: 359 SNPDLKNKQGMT 370
++ K+K G+
Sbjct: 66 ADVHAKDKGGLV 77
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKE------ 282
+PL A + V L +G K+K L P+H AC GH V L+K
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 283 ---WRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339
W+ LH AA G ++ K +++ G + T K + DGNTPL
Sbjct: 108 ADLWKFTP----------LHEAAAKGKYEICKLLLQ-HGADPT------KKNRDGNTPLD 150
Query: 340 L 340
L
Sbjct: 151 L 151
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 200 SLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKE 259
++ I +GN++ +L + +G V T K+ +C + VN ++ +
Sbjct: 2 AMGISLGNSEADRQLLEAAKAG----------DVETVKK---LCTVQSVNCRD-IEGRQS 47
Query: 260 TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPG 318
T P+H A +V+ LL+ + D G + LH A GH ++ + +++
Sbjct: 48 T--PLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVK--- 100
Query: 319 TNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMT 370
VVN D TPLH AA G ++ LL++G ++P KN+ G T
Sbjct: 101 ----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNT 147
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRY--GRSNPDLKNKQGMTAYKMA 375
V + EDG+T LHLA +H H + LL + G DL+N G TA +A
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
+VT++G LH A + H + ++ + +D + N + G T LHLAA+ G +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD-LQNDL---GQTALHLAAILGEAS 59
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALR 377
V L G + + + G TA +A R
Sbjct: 60 TVEKLYAAG-AGVLVAERGGHTALHLACR 87
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL 340
++WR +G LH A + A+MV+ ++ G ++ E G TPLHL
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTC-----GRTPLHL 198
Query: 341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
A + V+ LL+ G ++P + G T AL
Sbjct: 199 AVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSAL 233
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRY--GRSNPDLKNKQGMTAYKMA 375
V + EDG+T LHLA +H H + LL + G DL+N G TA +A
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348
+VT++G LH A + H + ++ + +D + N + G T LHLAA+ G +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD-LQNDL---GQTALHLAAILGEAS 59
Query: 349 VVYALLRYGRSNPDLKNKQGMTAYKMALR 377
V L G + + + G TA +A R
Sbjct: 60 TVEKLYAAG-AGVLVAERGGHTALHLACR 87
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHL 340
++WR +G LH A + A+MV+ ++ G ++ E G TPLHL
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKPEPTC-----GRTPLHL 198
Query: 341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
A + V+ LL+ G ++P + G T AL
Sbjct: 199 AVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSAL 233
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313
+K + E IH+A + G + + L++ P++ GC LH A K G D K +
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYL 72
Query: 314 IEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL 354
+ + G P+HLA + +V AL+
Sbjct: 73 ASVGEVHSLW---------HGQKPIHLAVXANKTDLVVALV 104
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+H A G D +K + D +VNK DE G TPL A+ G + V LL +G
Sbjct: 6 IHQLAAQGELDQLKEHLR------KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 358 RSNPDLKNKQGMTAYKMA 375
++P + K+ +A +A
Sbjct: 60 -ADPHILAKERESALSLA 76
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAII 314
K ++ P+ A G V L EW + + L A+ G+ D+V ++
Sbjct: 31 KPDERGFTPLIWASAFGEIET-VRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 315 EIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
E D +N D +G TPL A H + V ALL G
Sbjct: 90 E-------RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAII 314
K ++ P+ A G V L EW + + L A+ G+ D+V ++
Sbjct: 31 KPDERGFTPLIWASAFGEIET-VRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 315 EIPGTNMTMDEVVNKMDEDGNTPLHLAALHG-HSQVVYALLRYG 357
E D +N D +G TPL L A+HG H + V ALL G
Sbjct: 90 E-------RDVDINIYDWNGGTPL-LYAVHGNHVKCVEALLARG 125
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+H A G D +K + D +VNK DE G TPL A+ G + V LL +G
Sbjct: 6 IHQLAAQGELDQLKEHLR------KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 358 RSNPDLKNKQGMTAYKMA 375
++P + K+ +A +A
Sbjct: 60 -ADPHILAKERESALSLA 76
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 326 VVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM 369
++N D +G+T L++AA G+ +V ALL YG ++P + NK G+
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGL 317
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFA 99
++N ++ GDT L+ AAR G ++ AL+D+
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 22/187 (11%)
Query: 36 EKVLTDGSSLLHVA----AKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNT 91
+++ DG S LH+A K+ E+ ++ FL N NN TPLH A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEI 60
Query: 92 ATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM--LGRVNVWRTSIAGSSLTMA 149
A AL+ A D + + GNT LH A L V V S L
Sbjct: 61 AEALLG----------AGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL--- 106
Query: 150 HSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTD 209
HS L + I+ + I LVSL ++ + ++ L LA+++ N D
Sbjct: 107 HS-ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 210 VLEYILR 216
++ +L+
Sbjct: 166 LVSLLLK 172
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
+T++G + LH A + + +I ++ N + + TPLHLA + ++
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ---TPLHLAVITNQPEI 60
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMALRE 378
ALL G +P+L++ +G T +A +
Sbjct: 61 AEALLGAG-CDPELRDFRGNTPLHLACEQ 88
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+HLA + LL P L G LH A + G V + + T
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQ-SCTTPH 105
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
+ ++ + +G+T LHLA++HG+ +V L+ G + G TA +A+
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQV 349
+T++G + LH A + + +I ++ N + + TPLHLA + ++
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ---TPLHLAVITNQPEI 57
Query: 350 VYALLRYGRSNPDLKNKQGMTAYKMALRE 378
ALL G +P+L++ +G T +A +
Sbjct: 58 AEALLGAG-CDPELRDFRGNTPLHLACEQ 85
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 22/182 (12%)
Query: 41 DGSSLLHVA----AKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALV 96
DG S LH+A K+ E+ ++ FL N NN TPLH A + A AL+
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 97 DFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM--LGRVNVWRTSIAGSSLTMAHSYFL 154
A D + + GNT LH A L V V S L HS L
Sbjct: 63 G----------AGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL---HS-IL 107
Query: 155 SNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYI 214
+ I+ + I LVSL ++ + ++ L LA+++ N D++ +
Sbjct: 108 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 167
Query: 215 LR 216
L+
Sbjct: 168 LK 169
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+HLA + LL P L G LH A + G V + + T
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQ-SCTTPH 102
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMAL 376
+ ++ + +G+T LHLA++HG+ +V L+ G + G TA +A+
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA- 352
G LH AA+ +D K ++E D + G TPLH AA+ +Q V+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNM-------GRTPLH-AAVSADAQGVFQI 73
Query: 353 LLRYGRSNPDLKNKQGMTAYKMALR 377
LLR ++ D + G T +A R
Sbjct: 74 LLRNRATDLDARMHDGTTPLILAAR 98
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
L N+T+ G+T LH AAR + + A L+ +A D +N MG T LH A
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLL----------EASADAXIQDN-MGRTPLHAA 62
Query: 128 L 128
+
Sbjct: 63 V 63
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 10/160 (6%)
Query: 226 SGKSPLQVATK-KRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWR 284
+G++ L +A + R+ LLE + + ++ N P+H A V LL+
Sbjct: 21 TGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR-TPLHAAVSADAQGVFQILLRNRA 79
Query: 285 CPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344
+G L AA+ M++ +I N D VN +D+ G + LH AA
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLI-----NSHAD--VNAVDDLGKSALHWAAAV 132
Query: 345 GHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384
+ LL+ G +N D++N + T +A RE +T+
Sbjct: 133 NNVDAAVVLLKNG-ANKDMQNNKEETPLFLAAREGSYETA 171
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 152 NNKEETPLFLAAREGSYETAKVLLD 176
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 252 SALKKNKETLYPIHL---ACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD 308
S K + L P+ L A G V+ + +KE PS + G LH A +
Sbjct: 10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYS 68
Query: 309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQG 368
+V +I G N VN D G TPLH AA + + AL+++G + G
Sbjct: 69 IVDFLI-TAGAN------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 369 MTAYKMA--LREYY 380
TA++ RE Y
Sbjct: 122 ATAFEKCDPYREGY 135
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA+ +D K ++E N D G TPLH AA+ +Q V+ +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD-------ANIQDNMGRTPLH-AAVSADAQGVFQI 108
Query: 354 LRYGR-SNPDLKNKQGMTAYKMALR 377
L R ++ D + G T +A R
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAAR 133
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
L N+T+ G+T LH AAR + + A L+ +A D +++ MG T LH A
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLL----------EASAD-ANIQDNMGRTPLHAA 97
Query: 128 L 128
+
Sbjct: 98 V 98
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLD 211
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 329 KMDEDGNTPLHLAALHGHSQVVYALL---RYGRSNPDLKNKQGMTAYKMAL 376
+ DEDG+TPLH+A + G+ V+ L+ + G D+ N T +A+
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 54
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA +D K ++E N D G TPLH AA+ +Q V+ +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASAD-------ANIQDNMGRTPLH-AAVSADAQGVFQI 108
Query: 354 LRYGR-SNPDLKNKQGMTAYKMALR 377
L R ++ D + G T +A R
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAAR 133
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLD 211
>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
pdb|1H2B|B Chain B, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
Length = 359
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 248 VNGYSALKKNKETLYP---IHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304
+ Y A+KK TLYP + + G ++ V+LLK ++ D L A +
Sbjct: 171 ITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL 230
Query: 305 G-------HADMVKAIIEIP---GTNMTMDEV 326
G D VK ++E+ G N+ MD V
Sbjct: 231 GADHVVDARRDPVKQVMELTRGRGVNVAMDFV 262
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA+ +D K ++E N D G TPLH AA+ +Q V+ +
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD-------ANIQDNMGRTPLH-AAVSADAQGVFQI 76
Query: 354 LRYGR-SNPDLKNKQGMTAYKMALR 377
L R ++ D + G T +A R
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAAR 101
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
L N+T+ G+T LH AAR + + A L+ +A D +++ MG T LH A
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLL----------EASAD-ANIQDNMGRTPLHAA 65
Query: 128 L 128
+
Sbjct: 66 V 66
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLD 179
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 294 GCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353
G LH AA+ +D K ++E N D G TPLH AA+ +Q V+ +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASAD-------ANIQDNMGRTPLH-AAVSADAQGVFQI 109
Query: 354 LRYGR-SNPDLKNKQGMTAYKMALR 377
L R ++ D + G T +A R
Sbjct: 110 LIRNRATDLDARMHDGTTPLILAAR 134
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEA 127
L N+T+ G+T LH AAR + + A L+ +A D +++ MG T LH A
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLL----------EASAD-ANIQDNMGRTPLHAA 98
Query: 128 L 128
+
Sbjct: 99 V 99
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 188 NNREETPLFLAAREGSYETAKVLLD 212
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Query: 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309
G A ++ P+H A V LL+ +G L AA+ M
Sbjct: 74 GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGM 133
Query: 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM 369
V+ +I T D +N D G T LH AA +++ V LL + +N D ++ +
Sbjct: 134 VEDLI-------TADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDE 185
Query: 370 TAYKMALREYYMQTSIA 386
T +A RE + S A
Sbjct: 186 TPLFLAAREGSYEASKA 202
>pdb|4GXP|A Chain A, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
pdb|4GXP|B Chain B, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
pdb|4GXP|C Chain C, Chimeric Family 1 Beta-Glucosidase Made With
Non-Contiguous Schema
Length = 467
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA------DMVKA 312
ET P C G + +V + K + P ++VT+NG +++G D +KA
Sbjct: 338 ETAMPWLRPCAAGFRDFLVWISKRYGYPPIYVTENGAAFDDVVSEDGRVHDQNRIDYLKA 397
Query: 313 IIEIPGTNMTMDEV 326
I T + +D V
Sbjct: 398 YIGAMVTAVELDGV 411
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
DGNT LH AAL+ + LL+ GR+ N+ G TA +A ++++ +
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKE 254
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQ 382
DGNT LH AAL+ + LL+ GR+ N+ G TA +A ++++ +
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKE 273
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+H AA +GH ++ +I + VN + D +PLH A L GH V LL++G
Sbjct: 7 MHEAAIHGHQLSLRNLI-------SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 59
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
Query: 249 NGYSALKKNKETLYPIHLACKNGHANVMVELLK----------EWRCPSLFVTDNGCNIL 298
G++ + + P+H AC GH + + LLK +W P LF N C
Sbjct: 25 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP-LF---NAC--- 77
Query: 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+G D V +++ G ++ + + D +P+H AA GH + V +L+ YG
Sbjct: 78 ----VSGSWDCVNLLLQ-HGASV-------QPESDLASPIHEAARRGHVECVNSLIAYG 124
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 29/107 (27%)
Query: 261 LYPIHLACKNGHANVMVELLK----------EWRCPSLFVTDNGCNILHFAAKNGHADMV 310
+ P+H AC GH + + LLK +W P LF N C +G D V
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP-LF---NAC-------VSGSWDCV 141
Query: 311 KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+++ G ++ + + D +P+H AA GH + V +L+ YG
Sbjct: 142 NLLLQH-GASV-------QPESDLASPIHEAARRGHVECVNSLIAYG 180
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+H AA +GH ++ +I + VN + D +PLH A L GH V LL++G
Sbjct: 63 MHEAAIHGHQLSLRNLI-------SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 226 SGKSPLQVATKKRNLGVCYLLEVNGYSA--------LKKNKETLY-----PIHLACKNGH 272
G S L +A +KR+L LL NG +K++ T + P+ LA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 273 ANVMVELLKEWRCP-SLFVTDN-GCNILH---FAAKNGHAD------MVKAIIEIPGT-- 319
+V+ LL+ P SL TD+ G +LH A N + M ++++
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 221
Query: 320 -NMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361
+ ++E+ N G TPL LAA G ++ +L+ S P
Sbjct: 222 PTVQLEEISN---HQGLTPLKLAAKEGKIEIFRHILQREFSGP 261
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+A KNG D VK + E VN+ E G PLH AA G +++ LL G
Sbjct: 13 WALKNGDLDEVKDYV-------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 292 DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351
+ G LH+AA G ++++ ++ + G + +N D+ TPL A GH V
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLL-LKGAD------INAPDKHHITPLLSAVYEGHVSCVK 90
Query: 352 ALLRYGRSNPDLKNKQGMTAYK 373
LL G ++ +K G+TA++
Sbjct: 91 LLLSKG-ADKTVKGPDGLTAFE 111
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357
+A KNG D VK + E VN+ E G PLH AA G +++ LL G
Sbjct: 8 WALKNGDLDEVKDYV-------AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 58
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 222 ISWSSG----KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
++W +G +PL AT +L C L NG + + + P+H A GH +
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 278 ELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMV 310
LK R L D+ G + L A + +AD+V
Sbjct: 286 LFLK--RGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 222 ISWSSG----KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
++W +G +PL AT +L C L NG + + + P+H A GH +
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 278 ELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMV 310
LK R L D+ G + L A + +AD+V
Sbjct: 286 LFLK--RGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 222 ISWSSG----KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMV 277
++W +G +PL AT +L C L NG + + + P+H A GH +
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285
Query: 278 ELLKEWRCPSLFVTDN-GCNILHFAAKNGHADMV 310
LK R L D+ G + L A + +AD+V
Sbjct: 286 LFLK--RGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 73 NNQGDTPLHCAARAGKLNTATALVD 97
NN+ +TPL AAR G TA L+D
Sbjct: 78 NNKEETPLFLAAREGSYETAKVLLD 102
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT 322
P+ LA K + +LLK C G LH AA + + ++E +
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELV 64
Query: 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRS 359
+ + +++ E G T LH+A ++ + +V ALL G S
Sbjct: 65 FEPMTSELYE-GQTALHIAVINQNVNLVRALLARGAS 100
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 327 VNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY--KMALRE 378
+NK + G L AA GH V LL GR + D +N G TA + LRE
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,887,026
Number of Sequences: 62578
Number of extensions: 484925
Number of successful extensions: 2160
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 562
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)