Query 040887
Match_columns 394
No_of_seqs 245 out of 2352
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 20:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-56 5.9E-61 403.5 34.3 358 4-384 13-393 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.4E-52 1.2E-56 375.4 31.6 334 36-388 8-364 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.6E-47 8.7E-52 331.6 29.9 289 6-364 26-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 9.3E-47 3.2E-51 328.1 31.9 283 38-388 21-321 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.8E-46 6.2E-51 319.0 31.4 263 41-366 4-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 4.5E-47 1.5E-51 332.5 28.3 295 5-377 24-322 (351)
7 3d9h_A CDNA FLJ77766, highly s 100.0 6.8E-46 2.3E-50 314.0 23.7 262 4-363 14-282 (285)
8 1oy3_D Transcription factor in 100.0 1.6E-45 5.4E-50 312.6 20.5 269 35-384 2-274 (282)
9 2xai_A ASB-9, ankyrin repeat a 100.0 4.9E-45 1.7E-49 305.2 22.1 242 41-380 2-250 (261)
10 3d9h_A CDNA FLJ77766, highly s 100.0 3.7E-44 1.3E-48 303.4 25.4 244 39-379 12-266 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-44 4.8E-49 317.8 23.2 279 8-360 69-371 (373)
12 1wdy_A 2-5A-dependent ribonucl 100.0 1.8E-43 6.1E-48 300.5 28.2 262 6-331 6-283 (285)
13 3ljn_A Hypothetical protein; a 100.0 5.6E-45 1.9E-49 320.3 19.3 256 36-388 14-309 (364)
14 2fo1_E LIN-12 protein; beta-ba 100.0 9.2E-45 3.1E-49 319.0 18.1 315 5-389 37-367 (373)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-43 3.8E-48 295.7 22.8 229 35-357 3-246 (253)
16 1k1a_A B-cell lymphoma 3-encod 100.0 3.5E-43 1.2E-47 291.1 22.0 227 35-384 2-232 (241)
17 3b7b_A Euchromatic histone-lys 100.0 9.5E-42 3.3E-46 281.6 24.9 225 36-355 5-231 (237)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 3.5E-42 1.2E-46 286.6 22.4 205 175-388 37-243 (253)
19 3b7b_A Euchromatic histone-lys 100.0 2.4E-41 8.3E-46 279.2 26.5 222 68-384 3-226 (237)
20 3aji_A 26S proteasome non-ATPa 100.0 9.9E-42 3.4E-46 280.4 23.9 218 39-383 3-220 (231)
21 3utm_A Tankyrase-1; tankyrase, 100.0 1.4E-41 4.8E-46 297.6 25.0 279 36-388 18-300 (351)
22 2xai_A ASB-9, ankyrin repeat a 100.0 1.2E-41 4.2E-46 284.6 19.2 255 5-355 3-259 (261)
23 1s70_B 130 kDa myosin-binding 100.0 1.3E-41 4.5E-46 290.9 19.0 266 11-379 4-276 (299)
24 2dzn_A Probable 26S proteasome 100.0 1.1E-40 3.6E-45 273.7 22.7 216 42-379 2-219 (228)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-40 4.9E-45 275.4 23.5 191 190-388 4-203 (241)
26 4b93_B Ankyrin repeat domain-c 100.0 8.4E-42 2.9E-46 285.4 15.3 227 37-357 6-242 (269)
27 3ljn_A Hypothetical protein; a 100.0 2.3E-41 7.9E-46 297.3 14.8 278 6-361 21-315 (364)
28 3eu9_A Huntingtin-interacting 100.0 1.5E-39 5.3E-44 269.1 24.7 233 36-363 3-238 (240)
29 4b93_B Ankyrin repeat domain-c 100.0 1.7E-40 5.9E-45 277.4 15.6 224 70-380 5-230 (269)
30 3aji_A 26S proteasome non-ATPa 100.0 1.2E-38 4.1E-43 262.0 25.9 185 194-387 5-191 (231)
31 2f8y_A Notch homolog 1, transl 100.0 7.3E-39 2.5E-43 261.8 21.7 158 194-360 57-216 (223)
32 3kea_A K1L; tropism, ANK repea 100.0 1.2E-39 4.3E-44 275.5 16.0 225 36-366 25-252 (285)
33 1sw6_A Regulatory protein SWI6 100.0 1.5E-40 5.2E-45 286.7 10.1 271 52-379 29-327 (327)
34 1oy3_D Transcription factor in 100.0 4.9E-39 1.7E-43 272.7 17.9 260 4-346 8-270 (282)
35 3eu9_A Huntingtin-interacting 100.0 1.4E-37 4.9E-42 257.2 24.8 227 69-390 2-232 (240)
36 2dzn_A Probable 26S proteasome 100.0 3.7E-38 1.2E-42 258.6 19.6 220 6-356 3-227 (228)
37 3kea_A K1L; tropism, ANK repea 100.0 3.7E-38 1.3E-42 266.5 19.8 216 51-366 8-226 (285)
38 1ikn_D Protein (I-kappa-B-alph 100.0 2E-39 6.9E-44 267.3 11.0 222 36-378 2-229 (236)
39 3hra_A Ankyrin repeat family p 100.0 1.2E-36 3.9E-41 244.5 24.1 195 39-357 2-201 (201)
40 2rfa_A Transient receptor pote 100.0 6.7E-37 2.3E-41 251.7 21.9 221 41-364 2-226 (232)
41 2f8y_A Notch homolog 1, transl 100.0 4.9E-37 1.7E-41 250.9 20.3 208 173-389 3-212 (223)
42 1s70_B 130 kDa myosin-binding 100.0 3E-37 1E-41 263.9 17.5 246 6-357 41-287 (299)
43 2pnn_A Transient receptor pote 100.0 9.3E-37 3.2E-41 257.0 16.1 237 36-373 7-272 (273)
44 2etb_A Transient receptor pote 100.0 3.4E-35 1.2E-39 245.1 18.0 216 41-361 1-247 (256)
45 1sw6_A Regulatory protein SWI6 100.0 1.8E-36 6.3E-41 261.1 8.8 252 16-345 30-327 (327)
46 3hra_A Ankyrin repeat family p 100.0 4.2E-34 1.4E-38 229.6 21.6 188 193-388 3-198 (201)
47 2rfa_A Transient receptor pote 100.0 9.7E-34 3.3E-38 232.8 22.4 187 194-389 2-218 (232)
48 4gpm_A Engineered protein OR26 100.0 8.2E-34 2.8E-38 219.0 19.7 158 197-363 6-164 (169)
49 1ikn_D Protein (I-kappa-B-alph 100.0 2.6E-35 8.8E-40 242.7 10.0 190 190-387 3-203 (236)
50 4gpm_A Engineered protein OR26 100.0 2.3E-33 8E-38 216.4 17.8 150 229-387 6-155 (169)
51 3jxi_A Vanilloid receptor-rela 100.0 8.1E-34 2.8E-38 237.4 16.4 213 39-361 2-251 (260)
52 2etb_A Transient receptor pote 100.0 3.2E-33 1.1E-37 233.2 15.6 186 195-389 2-242 (256)
53 2pnn_A Transient receptor pote 100.0 1.5E-32 5.1E-37 231.3 14.3 190 190-388 8-253 (273)
54 2aja_A Ankyrin repeat family p 100.0 2.2E-34 7.7E-39 249.9 0.8 268 32-384 82-365 (376)
55 3v30_A DNA-binding protein rfx 100.0 1.3E-31 4.3E-36 209.3 15.7 168 195-371 2-171 (172)
56 4hbd_A KN motif and ankyrin re 100.0 7.3E-32 2.5E-36 226.7 13.7 189 196-393 77-275 (276)
57 2rfm_A Putative ankyrin repeat 100.0 6E-31 2E-35 209.3 17.6 160 190-357 30-190 (192)
58 3jxi_A Vanilloid receptor-rela 100.0 2.5E-31 8.6E-36 222.2 15.8 188 193-389 3-246 (260)
59 4hbd_A KN motif and ankyrin re 100.0 5E-31 1.7E-35 221.6 17.3 160 190-357 106-273 (276)
60 2rfm_A Putative ankyrin repeat 100.0 1.2E-30 4.1E-35 207.6 17.2 161 221-390 29-189 (192)
61 3v31_A Ankyrin repeat family A 100.0 2.5E-30 8.4E-35 201.0 17.9 155 195-357 3-158 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.4E-30 8.3E-35 200.0 16.0 157 195-360 5-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 8E-30 2.7E-34 198.3 18.4 158 192-357 11-169 (169)
64 3v31_A Ankyrin repeat family A 100.0 1E-29 3.6E-34 197.4 18.9 152 226-386 2-153 (167)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.7E-30 1.9E-34 199.1 17.0 154 225-387 12-165 (169)
66 1awc_B Protein (GA binding pro 100.0 8.6E-30 2.9E-34 194.7 17.7 150 196-353 3-152 (153)
67 1awc_B Protein (GA binding pro 100.0 1.1E-29 3.6E-34 194.2 16.5 147 228-384 3-149 (153)
68 3v30_A DNA-binding protein rfx 100.0 2.3E-29 7.8E-34 196.5 18.6 152 227-387 2-154 (172)
69 3f6q_A Integrin-linked protein 100.0 1E-29 3.6E-34 199.7 15.8 166 194-368 4-171 (179)
70 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4.1E-29 1.4E-33 191.7 17.2 152 195-356 2-155 (156)
71 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.9E-29 6.4E-34 195.0 14.9 153 226-388 4-157 (162)
72 3twr_A Tankyrase-2; ankyrin re 100.0 1.5E-29 5E-34 196.2 13.3 158 191-357 4-163 (165)
73 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1E-30 3.5E-35 215.2 6.9 180 193-381 3-194 (239)
74 3f6q_A Integrin-linked protein 100.0 7.6E-29 2.6E-33 194.7 16.4 154 225-387 3-157 (179)
75 2vge_A RELA-associated inhibit 100.0 4.4E-32 1.5E-36 221.0 -2.5 195 178-384 2-204 (229)
76 3twr_A Tankyrase-2; ankyrin re 100.0 4.7E-29 1.6E-33 193.3 12.9 152 223-384 4-156 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.1E-28 7E-33 187.8 15.1 149 227-386 2-151 (156)
78 2aja_A Ankyrin repeat family p 100.0 5E-31 1.7E-35 228.9 -1.8 236 42-388 65-339 (376)
79 1bi7_B P16INK4A, MTS1, multipl 100.0 1.9E-28 6.5E-33 187.7 10.7 143 223-375 8-151 (156)
80 1d9s_A Cyclin-dependent kinase 99.9 3E-27 1E-31 176.6 13.4 130 221-360 6-136 (136)
81 3t8k_A Uncharacterized protein 99.9 2.6E-28 8.8E-33 191.5 7.4 162 195-365 6-184 (186)
82 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-27 4.3E-32 196.7 10.9 152 225-386 3-157 (239)
83 2vge_A RELA-associated inhibit 99.9 1.5E-27 5.1E-32 194.3 8.0 159 212-379 2-167 (229)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7E-26 2.4E-30 167.1 15.5 126 226-360 1-126 (126)
85 3t8k_A Uncharacterized protein 99.9 3.3E-27 1.1E-31 185.2 8.2 148 227-385 6-171 (186)
86 1d9s_A Cyclin-dependent kinase 99.9 1.8E-26 6.1E-31 172.4 11.5 128 250-387 2-130 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 5.2E-26 1.8E-30 169.9 13.6 125 225-357 12-136 (136)
88 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-26 5.9E-31 172.8 10.5 125 250-384 1-125 (137)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 2.6E-25 8.8E-30 170.3 11.6 143 190-341 7-151 (156)
90 3aaa_C Myotrophin, protein V-1 99.9 5.1E-25 1.7E-29 161.4 11.6 115 257-380 4-118 (123)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 8.4E-25 2.9E-29 163.3 12.9 123 256-387 10-132 (136)
92 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-24 3.9E-29 184.4 13.5 140 227-381 151-299 (301)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6E-24 2E-28 156.7 14.8 121 259-388 1-121 (126)
94 3c5r_A BARD-1, BRCA1-associate 99.9 6E-25 2.1E-29 164.4 8.2 128 222-357 5-132 (137)
95 3ehr_A Osteoclast-stimulating 99.9 1.1E-24 3.9E-29 177.2 8.7 137 225-369 71-207 (222)
96 3aaa_C Myotrophin, protein V-1 99.9 9.1E-24 3.1E-28 154.7 9.3 113 225-345 5-117 (123)
97 3deo_A Signal recognition part 99.9 1.6E-23 5.6E-28 164.7 10.9 107 228-343 45-152 (183)
98 3deo_A Signal recognition part 99.9 3.2E-23 1.1E-27 163.0 11.7 117 257-383 41-158 (183)
99 3ehr_A Osteoclast-stimulating 99.9 1.3E-23 4.4E-28 170.9 9.4 123 255-386 68-191 (222)
100 3ui2_A Signal recognition part 99.9 3.6E-23 1.2E-27 170.4 12.1 139 194-357 44-183 (244)
101 3ui2_A Signal recognition part 99.9 7.3E-23 2.5E-27 168.5 13.0 166 10-252 20-185 (244)
102 3lvq_E ARF-GAP with SH3 domain 99.9 1.9E-22 6.6E-27 183.3 16.3 141 228-377 133-282 (497)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2E-22 6.9E-27 139.5 11.8 93 259-360 1-93 (93)
104 1dcq_A PYK2-associated protein 99.9 1.9E-21 6.4E-26 162.8 19.8 159 191-357 62-261 (278)
105 3jue_A Arfgap with coiled-coil 99.9 3E-22 1E-26 173.2 13.8 149 225-381 197-350 (368)
106 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-22 4.5E-27 171.7 11.0 139 195-347 151-299 (301)
107 2l6b_A NR1C; ankyrin, consensu 99.9 1.2E-22 4.1E-27 146.8 7.2 109 255-372 4-112 (115)
108 1dcq_A PYK2-associated protein 99.9 8.2E-21 2.8E-25 158.9 17.3 159 223-389 62-259 (278)
109 3jue_A Arfgap with coiled-coil 99.8 6.5E-21 2.2E-25 164.8 12.8 124 256-388 195-321 (368)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.4E-20 4.7E-25 130.1 11.6 93 226-319 1-93 (93)
111 3lvq_E ARF-GAP with SH3 domain 99.8 8.1E-20 2.8E-24 166.1 14.4 135 195-343 132-276 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.5E-20 8.5E-25 134.6 8.7 108 223-338 5-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 3.6E-19 1.2E-23 127.1 9.7 89 288-384 18-106 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.1E-18 3.8E-23 124.5 9.8 92 254-353 18-109 (110)
115 1gp8_A Protein (scaffolding pr 56.8 8.2 0.00028 20.0 2.0 18 80-97 17-34 (40)
116 3zrh_A Ubiquitin thioesterase 35.5 96 0.0033 26.7 6.4 50 49-98 29-91 (454)
117 3gvo_A Pumilio 2, pumilio homo 27.5 2.1E+02 0.0073 23.9 7.6 292 3-355 1-317 (351)
118 3zrh_A Ubiquitin thioesterase 26.4 2E+02 0.0068 24.8 6.8 56 302-357 30-92 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-56 Score=403.46 Aligned_cols=358 Identities=23% Similarity=0.238 Sum_probs=289.0
Q ss_pred cCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887 4 VLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA 83 (394)
Q Consensus 4 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 83 (394)
...|+||.||..|+++.|+++...+.++ +..+..|.||||+||..|+.+++++|++.++ +++.++..|.||||+|
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~----~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGASP----NVSNVKVETPLHMAARAGHTEVAKYLLQNKA-KVNAKAKDDQTPLHCA 87 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS----CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCC----CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCCHHHHH
Confidence 3479999999999999999955444444 4578899999999999999999999999976 7899999999999999
Q ss_pred HHcCcHHHHHHHHhhccCCCCCCCCcchhhh----------------------hhhhcCCcHHHHHHHHhCccceeeecc
Q 040887 84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLR----------------------MENAMGNTALHEALFMLGRVNVWRTSI 141 (394)
Q Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~----------------------~~~~~~~t~l~~a~~~~~~~~~~~~~~ 141 (394)
+..|+.+++++|+++|++++..+....+++. ..+..|.||||.|+..+....+..++.
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999998654332221111 112334444444444443333322222
Q ss_pred cCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-
Q 040887 142 AGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS- 220 (394)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~- 220 (394)
.+.... ........++..++..+..+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.+..
T Consensus 168 ~g~~~~--------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 168 RDAHPN--------AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp TTCCTT--------CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCC--------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 221111 111122346677777788888888888888776 5667788899999999999999998887544
Q ss_pred CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887 221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF 300 (394)
Q Consensus 221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 300 (394)
+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+... +.++..|.||||+
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 317 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHV 317 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHH
Confidence 556678999999999999999999999999999999999999999999999999999999987665 7889999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380 (394)
Q Consensus 301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~ 380 (394)
|+..|+.+++++|+++|++ +|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+.|+
T Consensus 318 A~~~g~~~~v~~Ll~~gad-------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQHQAD-------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp HHHSSCSHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTC
T ss_pred HHHcCcHHHHHHHHhcCCC-------CCCCCCCCCCHHHHHHHCChHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCc
Confidence 9999999999999999999 9999999999999999999999999999999 9999999999999999999998
Q ss_pred cchh
Q 040887 381 MQTS 384 (394)
Q Consensus 381 ~~~~ 384 (394)
.+..
T Consensus 390 ~~~~ 393 (437)
T 1n11_A 390 ISVT 393 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-52 Score=375.43 Aligned_cols=334 Identities=25% Similarity=0.256 Sum_probs=268.3
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhh--
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLL-- 113 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~-- 113 (394)
+..+.+|.||||+||..|+.++|++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+....+++
T Consensus 8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp -------CCHHHHHHHHTCHHHHHHHHHTTC-CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence 6689999999999999999999999999965 7899999999999999999999999999999999865543322211
Q ss_pred --------------------hhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhH
Q 040887 114 --------------------RMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSL 173 (394)
Q Consensus 114 --------------------~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (394)
+..+..|.||||.|+..+....+..++..+.... ........++..++..+.
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--------CMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--------CCCTTSCCHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--------CCCCCCCCHHHHHHHcCC
Confidence 1123344455555554444333333332221111 011122356777788888
Q ss_pred HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCcc
Q 040887 174 VAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYS 252 (394)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~ 252 (394)
.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+.. ...+..|.||||+|+..++.+++++|++.|.+
T Consensus 159 ~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 159 VRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237 (437)
T ss_dssp HHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 899999999988877 5677889999999999999999999987644 45567789999999999999999999999999
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887 253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE 332 (394)
Q Consensus 253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 332 (394)
++..+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.+++++|+++|++ ++.++.
T Consensus 238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~ 309 (437)
T 1n11_A 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-------VDATTR 309 (437)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCCCS
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-------CCCCCC
Confidence 9999999999999999999999999999987665 77889999999999999999999999999998 999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
.|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus 310 ~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll 364 (437)
T 1n11_A 310 MGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364 (437)
T ss_dssp SCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999877654443
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.6e-47 Score=331.63 Aligned_cols=289 Identities=17% Similarity=0.132 Sum_probs=232.4
Q ss_pred CHHHHHHHHhccchhhhhccCCccchhhHhhhcCC-CCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887 6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLT-DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA 84 (394)
Q Consensus 6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 84 (394)
+|+||.|+.+||++.|+++...+.++ +.++. .|+||||+||..|+.++|++|+++|+ +++.++..+.+|++.++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadv----n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCC----CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-chhhhccCCCchhHHHH
Confidence 56777777777777777754444444 33443 47777777777777777777777755 56777777777777777
Q ss_pred HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887 85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT 164 (394)
Q Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (394)
..+...++..+++.++++ +..+..|.||++.|+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~-----------~~~d~~g~t~l~~A~~~~--------------------------------- 136 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADV-----------NECDFYGFTAFMEAAVYG--------------------------------- 136 (337)
T ss_dssp HHTCHHHHHHHHTTTCCT-----------TCBCTTCCBHHHHHHHTT---------------------------------
T ss_pred hcccchhhHHhhhccchh-----------hhhccCCCCHHHHHHHcC---------------------------------
Confidence 777777777777777765 344566778888877665
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCcc---------ccCCCCCcHHHHHHHcCCHHHHHHHHHh--CCCCCCCCCCCChHHH
Q 040887 165 IKTNIINSLVAIAYFLVSLDPKLSC---------CKNIEDKSPLSLAIEMGNTDVLEYILRS--LPSGISWSSGKSPLQV 233 (394)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~l~~ 233 (394)
..++++++++.|.+++. ..+..|.||||+|+..|+.+++++|++. .+.+..+..|.++++.
T Consensus 137 --------~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~ 208 (337)
T 4g8k_A 137 --------KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 208 (337)
T ss_dssp --------CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred --------cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence 33889999999887753 2355689999999999999999999975 3446777889999998
Q ss_pred HHhcCC----HHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887 234 ATKKRN----LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309 (394)
Q Consensus 234 a~~~~~----~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 309 (394)
++..+. ..++++|++.|++++.++..|.||||+|+..|+.++++.|++..+..++.+|..|+||||+|++.|+.++
T Consensus 209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence 876544 2688999999999999999999999999999999999999998777779999999999999999999999
Q ss_pred HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCc
Q 040887 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLK 364 (394)
Q Consensus 310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~ 364 (394)
+++|+++|++ +|. .+|||+|+..|+.+++++||++| |+++..
T Consensus 289 v~~Ll~~GAd-------~n~-----~~~L~~A~~~~~~~iv~~Ll~~G-A~~d~~ 330 (337)
T 4g8k_A 289 AELLCKRGAS-------TDC-----GDLVMTARRNYDHSLVKVLLSHG-AKEDFH 330 (337)
T ss_dssp HHHHHTTSCS-------STT-----CCHHHHHHHTTCHHHHHHHHHTT-CCC---
T ss_pred HHHHHHCCCC-------CCC-----CCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence 9999999998 654 46999999999999999999999 999864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=9.3e-47 Score=328.08 Aligned_cols=283 Identities=17% Similarity=0.141 Sum_probs=245.3
Q ss_pred cCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccC-CCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhh
Q 040887 38 VLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNN-QGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRME 116 (394)
Q Consensus 38 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~ 116 (394)
.+.+|.||||.||+.|+.++|++||++|+ ++|.++. .|+||||+||..|+.++|++|+++|++++ ..
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Ga-dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-----------~~ 88 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------LR 88 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CC
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCC-CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-----------hh
Confidence 44568999999999999999999999976 7888775 59999999999999999999999999974 44
Q ss_pred hhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCC
Q 040887 117 NAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDK 196 (394)
Q Consensus 117 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (394)
+..+.++++.+.... .. ..+..+.+.+.+++ ..+..|.
T Consensus 89 ~~~~~~~~~~~~~~~------------------~~-----------------------~~~~~~~~~~~~~~-~~d~~g~ 126 (337)
T 4g8k_A 89 KKNGATPFILAAIAG------------------SV-----------------------KLLKLFLSKGADVN-ECDFYGF 126 (337)
T ss_dssp CTTCCCHHHHHHHHT------------------CH-----------------------HHHHHHHTTTCCTT-CBCTTCC
T ss_pred ccCCCchhHHHHhcc------------------cc-----------------------hhhHHhhhccchhh-hhccCCC
Confidence 667889999887765 22 67778888888887 6888999
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCC-----------CCCCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHH
Q 040887 197 SPLSLAIEMGNTDVLEYILRSLPS-----------GISWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPI 264 (394)
Q Consensus 197 ~~l~~a~~~~~~~~~~~ll~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l 264 (394)
||+++|+..++.+++++|++.+.. ...+..|.||||+|+..|+.+++++|++ .|++++.++..|.+++
T Consensus 127 t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l 206 (337)
T 4g8k_A 127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206 (337)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence 999999999999999999997654 1234568999999999999999999985 6999999999999999
Q ss_pred HHHHHcCC----HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhccccCCCCCcHHH
Q 040887 265 HLACKNGH----ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVNKMDEDGNTPLH 339 (394)
Q Consensus 265 ~~a~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~g~t~L~ 339 (394)
+.++..+. ..++++|++.+.+. +.++..|.||||+|+..|+.+++++|++. |++ ++.+|.+|+||||
T Consensus 207 ~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-------vn~~d~~G~TpL~ 278 (337)
T 4g8k_A 207 IHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-------INDTDSDGKTALL 278 (337)
T ss_dssp HHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-------TTCBCTTSCBHHH
T ss_pred HHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-------ccCcCCCCCCHHH
Confidence 98876544 35778888887665 88999999999999999999999999986 566 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 340 LAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 340 ~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
+|+..|+.+++++||++| ||++.+ +||++|++.|+.+....+.
T Consensus 279 ~A~~~g~~~iv~~Ll~~G-Ad~n~~-----~~L~~A~~~~~~~iv~~Ll 321 (337)
T 4g8k_A 279 LAVELKLKKIAELLCKRG-ASTDCG-----DLVMTARRNYDHSLVKVLL 321 (337)
T ss_dssp HHHHTTCHHHHHHHHTTS-CSSTTC-----CHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCC-CCCCCC-----CHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999 988754 6999999999877654443
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-46 Score=318.97 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=236.2
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHhCCCCcccc-cCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhc
Q 040887 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKT-NNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAM 119 (394)
Q Consensus 41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 119 (394)
+|.||||.|++.|+.+++++|++.++ +++.. +..|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~~~~~ 71 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------LRKKN 71 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CCCTT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-----------ccCCC
Confidence 57899999999999999999999876 56666 7889999999999999999999999998864 34667
Q ss_pred CCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHH
Q 040887 120 GNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPL 199 (394)
Q Consensus 120 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 199 (394)
|.||||.|+..+ +. +++++|++.|.+++ ..+..|.|||
T Consensus 72 g~t~L~~A~~~~------------------~~-----------------------~~v~~Ll~~g~~~~-~~~~~g~t~L 109 (285)
T 1wdy_A 72 GATPFLLAAIAG------------------SV-----------------------KLLKLFLSKGADVN-ECDFYGFTAF 109 (285)
T ss_dssp CCCHHHHHHHHT------------------CH-----------------------HHHHHHHHTTCCTT-CBCTTCCBHH
T ss_pred CCCHHHHHHHcC------------------CH-----------------------HHHHHHHHcCCCCC-ccCcccCCHH
Confidence 899999998776 22 88999999998887 6788899999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCC-CC----------CCCCCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHH
Q 040887 200 SLAIEMGNTDVLEYILRSLPSG-IS----------WSSGKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLA 267 (394)
Q Consensus 200 ~~a~~~~~~~~~~~ll~~~~~~-~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a 267 (394)
|+|+..++.+++++|++.+... .. +..|.||||.|+..++.+++++|++. |++++..+..|.||||+|
T Consensus 110 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a 189 (285)
T 1wdy_A 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 9999999999999999976542 22 57789999999999999999999987 999999999999999999
Q ss_pred HHcCC----HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHHH
Q 040887 268 CKNGH----ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLAA 342 (394)
Q Consensus 268 ~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A~ 342 (394)
+..++ .+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-------~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-------INDTDSDGKTALLLAV 261 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-------TTCCCTTSCCHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-------ccccCCCCCcHHHHHH
Confidence 99999 89999999987765 8889999999999999999999999999 7888 9999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCccc
Q 040887 343 LHGHSQVVYALLRYGRSNPDLKNK 366 (394)
Q Consensus 343 ~~~~~~~~~~Ll~~g~ad~~~~~~ 366 (394)
..|+.+++++|+++| ++++.+|.
T Consensus 262 ~~~~~~i~~~Ll~~G-a~~~~~d~ 284 (285)
T 1wdy_A 262 ELKLKKIAELLCKRG-ASTDCGDL 284 (285)
T ss_dssp HTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred HcCcHHHHHHHHHcC-CCCCcccc
Confidence 999999999999999 99998874
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.5e-47 Score=332.53 Aligned_cols=295 Identities=24% Similarity=0.248 Sum_probs=245.8
Q ss_pred CCHHHHHHHHhccchhhhhccCC-ccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887 5 LDPAYFEAAIRGNIDDFLFSDIP-KQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA 83 (394)
Q Consensus 5 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 83 (394)
..++||.||..|+.+.++..... +.++ +.+|..|.||||+||..|+.+++++|++.|. +++.++..|.||||+|
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNC----HASDGRKSTPLHLAAGYNRVRIVQLLLQHGA-DVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTC----CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHH
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCc----ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHH
Confidence 36789999999999998884433 3333 6678889999999999999999999999865 7888999999999999
Q ss_pred HHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887 84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD 163 (394)
Q Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (394)
+..|+.+++++|+++|++++ ..+..|.||||.|+..+ +.
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~~------------------~~------------ 137 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVN-----------AMDLWQFTPLHEAASKN------------------RV------------ 137 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT-----------CCCTTCCCHHHHHHHTT------------------CH------------
T ss_pred HHCCCHHHHHHHHHCCCCCC-----------CCCCCCCCHHHHHHHcC------------------CH------------
Confidence 99999999999999998864 44667889999998766 22
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHH
Q 040887 164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVC 243 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 243 (394)
+++++|++.|.++. ..+..|.+|+++++..+..+.+.+.... .++..++..+....+
T Consensus 138 -----------~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 194 (351)
T 3utm_A 138 -----------EVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREADLAKV 194 (351)
T ss_dssp -----------HHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHHH-----------HHHHHHHHTTCHHHH
T ss_pred -----------HHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhcc-----------cHHHHHHHhccHHHH
Confidence 88999999998887 5777889999988887777777776653 466777788888777
Q ss_pred HHHHhcCccccccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q 040887 244 YLLEVNGYSALKKNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320 (394)
Q Consensus 244 ~~L~~~g~~~~~~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 320 (394)
..++..+......+..|.||||+|+.. +..+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++
T Consensus 195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~- 272 (351)
T 3utm_A 195 KKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK- 272 (351)
T ss_dssp HHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred HHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 776666665556778889999999998 5578889998887665 77888999999999999999999999999988
Q ss_pred CcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR 377 (394)
Q Consensus 321 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~ 377 (394)
++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|..
T Consensus 273 ------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 273 ------MNALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp ------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHSCH
T ss_pred ------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhhhH
Confidence 8999999999999999999999999999998 8999999999999998844
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.8e-46 Score=314.04 Aligned_cols=262 Identities=18% Similarity=0.154 Sum_probs=196.2
Q ss_pred cCCHHHHHHHHhccchhhhhccCCcc-------chhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCC
Q 040887 4 VLDPAYFEAAIRGNIDDFLFSDIPKQ-------DLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQG 76 (394)
Q Consensus 4 ~~~~~l~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g 76 (394)
..+|+||+|+..|+.+.+.......+ -+..-++..|.+|+||||+||..|+.+++++|++.+. +++.+|..|
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g 92 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADH 92 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECTTC
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCC
Confidence 45789999999999877776211110 0122346688899999999999999999999999865 688899999
Q ss_pred CCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCC
Q 040887 77 DTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSN 156 (394)
Q Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
+||||+|+..|+.+++++|++.|++++
T Consensus 93 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~----------------------------------------------------- 119 (285)
T 3d9h_A 93 VSPLHEACLGGHLSCVKILLKHGAQVN----------------------------------------------------- 119 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSS-----------------------------------------------------
T ss_pred CCHHHHHHHCCcHHHHHHHHHCCCCCC-----------------------------------------------------
Confidence 999999999999999999999888763
Q ss_pred cccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHh
Q 040887 157 PTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATK 236 (394)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~ 236 (394)
.++..|.||||+|+..++.+++++|++.+........|.||||+|+.
T Consensus 120 ---------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 120 ---------------------------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR 166 (285)
T ss_dssp ---------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred ---------------------------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Confidence 34456788888888888899999998887665556668899999999
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC
Q 040887 237 KRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI 316 (394)
Q Consensus 237 ~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 316 (394)
.|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. + .+..|.||||+|+..++.+++++|+++
T Consensus 167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 244 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDF 244 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999987665 4 478899999999999999999999999
Q ss_pred CCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 040887 317 PGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDL 363 (394)
Q Consensus 317 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~ 363 (394)
|++ ++.+|..|+||||+|+ ++.+++++|+++.++++..
T Consensus 245 gad-------~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 245 GAD-------TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp TCC-------TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCC-------CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 988 8999999999999998 4568999999985466543
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.6e-45 Score=312.65 Aligned_cols=269 Identities=19% Similarity=0.141 Sum_probs=185.9
Q ss_pred hhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCC--CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchh
Q 040887 35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF--LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDL 112 (394)
Q Consensus 35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 112 (394)
++.+|.+|.||||+||+.|+.++|++|++.++. .++.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------- 72 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL--------- 72 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---------
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 466899999999999999999999999998763 278999999999999999999999999999999874
Q ss_pred hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887 113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN 192 (394)
Q Consensus 113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (394)
..+..|.||||.|+..+ + .+++++|++.+++......
T Consensus 73 --~~~~~g~tpL~~A~~~~------------------~-----------------------~~~v~~Ll~~~~~~~~~~~ 109 (282)
T 1oy3_D 73 --VAERGGHTALHLACRVR------------------A-----------------------HTCACVLLQPRPSHPRDAS 109 (282)
T ss_dssp --CCCTTSCCHHHHHTTTT------------------C-----------------------HHHHHHHSSSCCSSCCCC-
T ss_pred --CCCCCCCCHHHHHHHcC------------------C-----------------------cchhHhhhccCCCCchhhH
Confidence 23445666666665443 1 1566666666554331100
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH-HHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887 193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL-GVCYLLEVNGYSALKKNKETLYPIHLACKNG 271 (394)
Q Consensus 193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~ 271 (394)
.+.+ . .........+.++++.+...+.. .....+...+.+++.++..|.||||+|+..|
T Consensus 110 ---~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 169 (282)
T 1oy3_D 110 ---DTYL--T---------------QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169 (282)
T ss_dssp ------------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred ---HHHh--h---------------cccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcC
Confidence 0000 0 00011123455666666665544 5666777778889999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887 272 HANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 350 (394)
+.+++++|++.+... +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++
T Consensus 170 ~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-------~~~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 170 DAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-------PTARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------CcccccCCCCHHHHHHHcCCcHHH
Confidence 999999999998776 5565 4599999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 351 YALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 351 ~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
++|+++| ++++.+|..|.||+++|......+..
T Consensus 242 ~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~~~~~~ 274 (282)
T 1oy3_D 242 RLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNR 274 (282)
T ss_dssp HHHHHTT-CCCCCCC-------------------
T ss_pred HHHHHcC-CCcCcCCCcccccccccCCccccccc
Confidence 9999999 99999999999999999988765544
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.9e-45 Score=305.16 Aligned_cols=242 Identities=18% Similarity=0.179 Sum_probs=214.4
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120 (394)
Q Consensus 41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 120 (394)
+|+||||+||..|+.+++++|++.+. +++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------------- 63 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN----------------- 63 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-----------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----------------
Confidence 58999999999999999999999965 799999999999999999999999999999988864
Q ss_pred CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887 121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS 200 (394)
Q Consensus 121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 200 (394)
..+..|.||||
T Consensus 64 ---------------------------------------------------------------------~~~~~g~t~L~ 74 (261)
T 2xai_A 64 ---------------------------------------------------------------------GVTADWHTPLF 74 (261)
T ss_dssp ---------------------------------------------------------------------CCCTTSCCHHH
T ss_pred ---------------------------------------------------------------------CCCCCCCCHHH
Confidence 24446788888
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887 201 LAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280 (394)
Q Consensus 201 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll 280 (394)
+|+..|+.+++++|++.+........|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus 75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 75 NACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 154 (261)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 88888899999999988777666677999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--
Q 040887 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR-- 358 (394)
Q Consensus 281 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-- 358 (394)
+.+.+. + .+..|.||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+..+ +++++|++++.
T Consensus 155 ~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-------~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~ 223 (261)
T 2xai_A 155 ESGADV-N-QGKGQDSPLHAVARTASEELACLLMDFGAD-------TQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223 (261)
T ss_dssp HHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCC
T ss_pred HcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCChhhhccccc--cHHHHHHhccCCc
Confidence 998776 4 388899999999999999999999999999 9999999999999999655 58999999872
Q ss_pred -----CCCCCcccCCCcHHHHHHhhhh
Q 040887 359 -----SNPDLKNKQGMTAYKMALREYY 380 (394)
Q Consensus 359 -----ad~~~~~~~g~t~l~~a~~~~~ 380 (394)
++++.++..|.||+|+|.+...
T Consensus 224 ~l~~~~~~~~r~~~g~t~l~~~~~~~~ 250 (261)
T 2xai_A 224 SLMQLCRLRIRKCFGIQQHHKITKLVL 250 (261)
T ss_dssp CHHHHHHHHHHTTSCTTCGGGGGGSSS
T ss_pred cHHHHHHHHHHHHhchhccccCcccCC
Confidence 2345789999999999987643
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-44 Score=303.41 Aligned_cols=244 Identities=19% Similarity=0.177 Sum_probs=196.8
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHHhCC----------CCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCC
Q 040887 39 LTDGSSLLHVAAKSGHGEITAKIAQYYP----------FLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQA 108 (394)
Q Consensus 39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 108 (394)
...|.|+||+||..|+.+.+..++..++ ..++..+..|+||||+|+..|+.+++++|++.|++++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----- 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN----- 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence 4568999999999999887777766532 2356788999999999999999999999999988763
Q ss_pred cchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCc
Q 040887 109 PVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188 (394)
Q Consensus 109 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (394)
T Consensus 87 -------------------------------------------------------------------------------- 86 (285)
T 3d9h_A 87 -------------------------------------------------------------------------------- 86 (285)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA 267 (394)
Q Consensus 189 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a 267 (394)
.++..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+ .|.||||+|
T Consensus 87 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A 164 (285)
T 3d9h_A 87 -IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEA 164 (285)
T ss_dssp -EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHH
T ss_pred -CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHH
Confidence 3455789999999999999999999997644 6677889999999999999999999999999987654 599999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCH
Q 040887 268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHS 347 (394)
Q Consensus 268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 347 (394)
+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++ ++. +..|+||||+|+..++.
T Consensus 165 ~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~-~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 165 ARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-------VNQ-GKGQDSPLHAVVRTASE 235 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-------TTC-CBTTBCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-------CCC-CCCCCCHHHHHHHcCCH
Confidence 9999999999999987765 88999999999999999999999999999998 774 88999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887 348 QVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379 (394)
Q Consensus 348 ~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~ 379 (394)
+++++|+++| +|++.+|..|+|||++|+.+.
T Consensus 236 ~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~ 266 (285)
T 3d9h_A 236 ELACLLMDFG-ADTQAKNAEGKRPVELVPPES 266 (285)
T ss_dssp HHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTS
T ss_pred HHHHHHHHCC-CCCCCcCCCCCCHHHHhcCcc
Confidence 9999999999 999999999999999999554
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-44 Score=317.82 Aligned_cols=279 Identities=17% Similarity=0.178 Sum_probs=223.3
Q ss_pred HHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccccc-CCCCCHHHHHHHc
Q 040887 8 AYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTN-NQGDTPLHCAARA 86 (394)
Q Consensus 8 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~ 86 (394)
.+..+...|+++.++... ....+..|.||||+||..|. +++++|+.. +++..| ..|+||||+|+..
T Consensus 69 ~~~~~~~~g~~~~~~~~~---------~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~ 135 (373)
T 2fo1_E 69 YGNGNDFLGDFNHTNLQI---------PTEPEPESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIASN 135 (373)
T ss_dssp ----------------------------------CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHHCT
T ss_pred cCCCCCcccccccccccc---------ccCCCCCCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHHHC
Confidence 345666777777776621 23467889999999999554 788888653 678888 7899999999999
Q ss_pred CcHHHHHHHH--------hhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcc
Q 040887 87 GKLNTATALV--------DFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT 158 (394)
Q Consensus 87 ~~~~~v~~Ll--------~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (394)
|+.+++++|+ +.|++++ ..|..|.||||.|+..+ +.
T Consensus 136 g~~~~v~~Ll~~~~~~ll~~ga~vn-----------~~d~~g~TpL~~A~~~g------------------~~------- 179 (373)
T 2fo1_E 136 SSAEKSEDLIVHEAKECIAAGADVN-----------AMDCDENTPLMLAVLAR------------------RR------- 179 (373)
T ss_dssp TCCSCCTTHHHHHHHHHHHTCCCTT-----------CCCTTSCCHHHHHHHHT------------------CH-------
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCc-----------CCCCCCCCHHHHHHHcC------------------hH-------
Confidence 9988877776 7898874 44667999999998876 22
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhC----CCCCCCCCCCChHHHH
Q 040887 159 LAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSL----PSGISWSSGKSPLQVA 234 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~~l~~a 234 (394)
+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|++.+ ..+..+..|.||||+|
T Consensus 180 ----------------~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A 242 (373)
T 2fo1_E 180 ----------------RLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242 (373)
T ss_dssp ----------------HHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred ----------------HHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence 89999999999987 67888999999999999999999999864 5677788999999999
Q ss_pred HhcC---CHHHHHHHHhcCccccc--------cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHH
Q 040887 235 TKKR---NLGVCYLLEVNGYSALK--------KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK 303 (394)
Q Consensus 235 ~~~~---~~~~~~~L~~~g~~~~~--------~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 303 (394)
+..+ +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.++..++.+|..|.||||+|+.
T Consensus 243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~ 322 (373)
T 2fo1_E 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322 (373)
T ss_dssp HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH
Confidence 9988 67999999999999876 567899999999999999999999998867779999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360 (394)
Q Consensus 304 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad 360 (394)
.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++ ++
T Consensus 323 ~g~~~iv~~Ll~~gad-------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~-a~ 371 (373)
T 2fo1_E 323 EGRIEVVMYLIQQGAS-------VEAVDATDHTARQLAQANNHHNIVDIFDRCR-PE 371 (373)
T ss_dssp HTCHHHHHHHHHTTCC-------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred cCCHHHHHHHHHcCCC-------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-cc
Confidence 9999999999999999 9999999999999999999999999999998 54
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-43 Score=300.50 Aligned_cols=262 Identities=17% Similarity=0.127 Sum_probs=234.3
Q ss_pred CHHHHHHHHhccchhhhhccCCccchhhHhhhc-CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887 6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKV-LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA 84 (394)
Q Consensus 6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 84 (394)
+++|+.|+..|+++.++++...+.++ +.. +..|.||||+||..|+.+++++|++.+. +++..+..|.||||+|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRHGA-DPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHH
Confidence 68999999999999999955555554 334 7889999999999999999999999965 78999999999999999
Q ss_pred HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887 85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT 164 (394)
Q Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (394)
..|+.+++++|+++|++++ ..+..|.||||.|+..+ +
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~-----------~~~~~g~t~L~~A~~~~------------------~-------------- 117 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVN-----------ECDFYGFTAFMEAAVYG------------------K-------------- 117 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTT-----------CBCTTCCBHHHHHHHTT------------------C--------------
T ss_pred HcCCHHHHHHHHHcCCCCC-----------ccCcccCCHHHHHHHhC------------------C--------------
Confidence 9999999999999999874 45677999999999776 2
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCcccc---------CCCCCcHHHHHHHcCCHHHHHHHHHh-C-CCCCCCCCCCChHHH
Q 040887 165 IKTNIINSLVAIAYFLVSLDPKLSCCK---------NIEDKSPLSLAIEMGNTDVLEYILRS-L-PSGISWSSGKSPLQV 233 (394)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~ 233 (394)
.+++++|++.|.++.... +..|.||||+|+..++.+++++|++. + ..+..+..|.||||.
T Consensus 118 ---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 188 (285)
T 1wdy_A 118 ---------VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188 (285)
T ss_dssp ---------HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred ---------HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 289999999999887432 67899999999999999999999986 3 346667889999999
Q ss_pred HHhcCC----HHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887 234 ATKKRN----LGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309 (394)
Q Consensus 234 a~~~~~----~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 309 (394)
|+..+. .+++++|++.|++++.++..|.||||+|+..|+.+++++|++..+..++.++..|.||||+|+..|+.++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 999999 8999999999999999999999999999999999999999996666669999999999999999999999
Q ss_pred HHHHHhCCCCCCcchhhccccC
Q 040887 310 VKAIIEIPGTNMTMDEVVNKMD 331 (394)
Q Consensus 310 ~~~Ll~~~~~~~~~~~~~~~~~ 331 (394)
+++|+++|++ ++.+|
T Consensus 269 ~~~Ll~~Ga~-------~~~~d 283 (285)
T 1wdy_A 269 AELLCKRGAS-------TDCGD 283 (285)
T ss_dssp HHHHHHHSSC-------SCCSS
T ss_pred HHHHHHcCCC-------CCccc
Confidence 9999999999 77765
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.6e-45 Score=320.31 Aligned_cols=256 Identities=19% Similarity=0.172 Sum_probs=221.1
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM 115 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 115 (394)
+..|.+|.||||+||..|+.++|++|++.+. +++..|..|.||||+|+..|+.+++++|++.|++++
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------ 80 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS------------ 80 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC------------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc------------
Confidence 5578889999999999999999999999965 799999999999999999999999999999988642
Q ss_pred hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195 (394)
Q Consensus 116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (394)
+..|
T Consensus 81 ----------------------------------------------------------------------------~~~g 84 (364)
T 3ljn_A 81 ----------------------------------------------------------------------------LWHG 84 (364)
T ss_dssp ----------------------------------------------------------------------------CBTT
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 1135
Q ss_pred CcHHHHHHHcCCHHHHHHHHHh----CCC------------------CCCCCCCCChHHHHHhcC--CHHHHHHHHhcCc
Q 040887 196 KSPLSLAIEMGNTDVLEYILRS----LPS------------------GISWSSGKSPLQVATKKR--NLGVCYLLEVNGY 251 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~----~~~------------------~~~~~~~~~~l~~a~~~~--~~~~~~~L~~~g~ 251 (394)
.||||+|+..|+.+++++|++. +.. +..+..|.||||+|+..| +.+++++|++.|+
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 6777777777777777777765 222 114567899999999999 8999999999999
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCC----CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhc
Q 040887 252 SALKKNKETLYPIHLACKNGHANVMVELLKEWRCP----SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVV 327 (394)
Q Consensus 252 ~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 327 (394)
+++.++..|.||||+|+..|+.+++++|++.++.. ++..+..|.||||+|+..|+.+++++|+++|++ +
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-------~ 237 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-------V 237 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-------T
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------C
Confidence 99999999999999999999999999999987762 488899999999999999999999999999999 9
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC------------CcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 328 NKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPD------------LKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 328 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~------------~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
+.+|..|+||||+|+..|+.+++++|+++| ++++ ..+..|+||++.|+..+..+......
T Consensus 238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHH
Confidence 999999999999999999999999999998 5543 36778899999898888665554443
No 14
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-45 Score=318.99 Aligned_cols=315 Identities=17% Similarity=0.147 Sum_probs=222.5
Q ss_pred CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887 5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA 84 (394)
Q Consensus 5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 84 (394)
...+|+.|+..|+.+.++........++ .-.++++-+...|+++++++++... ++..|.||||+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~g~t~L~~Aa 102 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYP--------NPQGYGNGNDFLGDFNHTNLQIPTE------PEPESPIKLHTEA 102 (373)
T ss_dssp -----------------------------------------------------------------------CCCHHHHHH
T ss_pred cccccccccCCccccchhhhhhhhcccc--------CccccCCCCCccccccccccccccC------CCCCCccHHHHHh
Confidence 4567888888888887776332222110 1234667788889999999887653 4788999999999
Q ss_pred HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhh-hcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887 85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMEN-AMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD 163 (394)
Q Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (394)
..+ .+++++|+.. ++ +..+ ..|.||||+|+..+....+..++
T Consensus 103 ~~~-~~~~~~L~~~--~~-----------n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll----------------------- 145 (373)
T 2fo1_E 103 AGS-YAITEPITRE--SV-----------NIIDPRHNRTVLHWIASNSSAEKSEDLI----------------------- 145 (373)
T ss_dssp HSS-SCCCSCCSTT--TT-----------TTCCCSSCCCHHHHHHCTTCCSCCTTHH-----------------------
T ss_pred cCC-chHHHHhccc--cc-----------cccCCcCCCCHHHHHHHCCCHHHHHHHH-----------------------
Confidence 955 4788888753 32 3345 67999999999887443332211
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHH
Q 040887 164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGV 242 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~ 242 (394)
...++.|++.|.+++ ..+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..|+.++
T Consensus 146 ----------~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~ 214 (373)
T 2fo1_E 146 ----------VHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 214 (373)
T ss_dssp ----------HHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred ----------HHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence 145677889999988 6788999999999999999999999998654 6677889999999999999999
Q ss_pred HHHHHhcC---ccccccCCCCCcHHHHHHHcC---CHHHHHHHHHhcCCCCc-------cccCCCchHHHHHHHcCCHHH
Q 040887 243 CYLLEVNG---YSALKKNKETLYPIHLACKNG---HANVMVELLKEWRCPSL-------FVTDNGCNILHFAAKNGHADM 309 (394)
Q Consensus 243 ~~~L~~~g---~~~~~~~~~g~~~l~~a~~~~---~~~~v~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~ 309 (394)
+++|++.+ .+++..+..|.||||+|+..+ +.+++++|++.+..... ..+..|.||||+|+..|+.++
T Consensus 215 v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~ 294 (373)
T 2fo1_E 215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294 (373)
T ss_dssp HHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred HHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHH
Confidence 99999988 789999999999999999998 89999999999776521 256789999999999999999
Q ss_pred HHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 310 VKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 310 ~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
+++|++.+ ++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+......
T Consensus 295 v~~Ll~~~~~~-------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 295 VKYLVGEKGSN-------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HHHHHHHSCCC-------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCC-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999887 66 9999999999999999999999999999999 999999999999999999999987765544
Q ss_pred H
Q 040887 389 Q 389 (394)
Q Consensus 389 ~ 389 (394)
+
T Consensus 367 ~ 367 (373)
T 2fo1_E 367 R 367 (373)
T ss_dssp T
T ss_pred h
Confidence 3
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-43 Score=295.69 Aligned_cols=229 Identities=20% Similarity=0.205 Sum_probs=175.0
Q ss_pred hhhcCCCCchHHHHHHhcC-------------CHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccC
Q 040887 35 FEKVLTDGSSLLHVAAKSG-------------HGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKH 101 (394)
Q Consensus 35 ~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 101 (394)
++.+|.+|.||||+|+..| +.+++++|++.++...+..|..|+||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3668999999999999987 899999999998755566789999999999999999999999999887
Q ss_pred CCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHH
Q 040887 102 IPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLV 181 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (394)
++
T Consensus 83 ~~------------------------------------------------------------------------------ 84 (253)
T 1yyh_A 83 AN------------------------------------------------------------------------------ 84 (253)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 64
Q ss_pred hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCC
Q 040887 182 SLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKE 259 (394)
Q Consensus 182 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~ 259 (394)
..+..|.||||+|+..++.+++++|++.+. .+..+..|.||||+|+..++.+++++|++.|++++.++..
T Consensus 85 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~ 156 (253)
T 1yyh_A 85 --------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156 (253)
T ss_dssp --------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT
T ss_pred --------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC
Confidence 244567889999999999999999998754 4566678999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHH
Q 040887 260 TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLH 339 (394)
Q Consensus 260 g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~ 339 (394)
|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||
T Consensus 157 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 157 GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-------RDITDHMDRLPRD 228 (253)
T ss_dssp SCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-------ccccccCCCCHHH
Confidence 999999999999999999999997766 88899999999999999999999999999999 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhcC
Q 040887 340 LAALHGHSQVVYALLRYG 357 (394)
Q Consensus 340 ~A~~~~~~~~~~~Ll~~g 357 (394)
+|+..|+.+++++|....
T Consensus 229 ~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 229 IAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHHTTCHHHHHHHHC--
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 999999999999999876
No 16
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.5e-43 Score=291.05 Aligned_cols=227 Identities=22% Similarity=0.219 Sum_probs=169.7
Q ss_pred hhhcCCCCchHHHHHHhcCCHHHHHHHHH---hCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcch
Q 040887 35 FEKVLTDGSSLLHVAAKSGHGEITAKIAQ---YYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVD 111 (394)
Q Consensus 35 ~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 111 (394)
++.+|.+|.||||+||..|+.+++++|++ ..+.+++..|..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 73 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-------- 73 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence 56789999999999999999999999998 3456899999999999999999999999999999988763
Q ss_pred hhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcccc
Q 040887 112 LLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCK 191 (394)
Q Consensus 112 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 191 (394)
..
T Consensus 74 ------------------------------------------------------------------------------~~ 75 (241)
T 1k1a_A 74 ------------------------------------------------------------------------------AL 75 (241)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 23
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887 192 NIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271 (394)
Q Consensus 192 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~ 271 (394)
+..|.||||+|+..++.+++++|++.+... +.+++..+..|.||||+|+..|
T Consensus 76 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~ 127 (241)
T 1k1a_A 76 DRHGQTAAHLACEHRSPTCLRALLDSAAPG----------------------------TLDLEARNYDGLTALHVAVNTE 127 (241)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHSCTT----------------------------SCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc----------------------------cccccccCcCCCcHHHHHHHcC
Confidence 446788999999999999999998875421 2344555666667777777777
Q ss_pred CHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887 272 HANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 350 (394)
+.+++++|++.+.+. +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++
T Consensus 128 ~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v 199 (241)
T 1k1a_A 128 CQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-------VNAQMYSGSSALHSASGRGLLPLV 199 (241)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHH
Confidence 777777777665554 4444 5677777777777777777777777776 677777777777777777777777
Q ss_pred HHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 351 YALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 351 ~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
++|+++| ++++.+|..|.||+++|+..|+.+..
T Consensus 200 ~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 200 RTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp HHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred HHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 7777777 77777777777777777777665543
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.5e-42 Score=281.63 Aligned_cols=225 Identities=24% Similarity=0.276 Sum_probs=193.7
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM 115 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 115 (394)
+..|.+|.||||+||..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 71 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------------ 71 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC------------
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC------------
Confidence 5588999999999999999999999999965 789999999999999999999999999999988763
Q ss_pred hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195 (394)
Q Consensus 116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (394)
.++..|
T Consensus 72 --------------------------------------------------------------------------~~~~~g 77 (237)
T 3b7b_A 72 --------------------------------------------------------------------------PKDAEG 77 (237)
T ss_dssp --------------------------------------------------------------------------CCCTTS
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 234467
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA 273 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~ 273 (394)
.||||+|+..|+.+++++|++.+ ..+..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 88999999999999999999875 3355667788888888888888888888888888888888899999999999999
Q ss_pred HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887 274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 353 (394)
+++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++...+..|
T Consensus 158 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 158 DIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-------VTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-------CCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999887665 77888899999999999999999999999988 888899999999999998888666655
Q ss_pred Hh
Q 040887 354 LR 355 (394)
Q Consensus 354 l~ 355 (394)
++
T Consensus 230 ~~ 231 (237)
T 3b7b_A 230 SK 231 (237)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.5e-42 Score=286.63 Aligned_cols=205 Identities=20% Similarity=0.212 Sum_probs=177.6
Q ss_pred HHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCc-c
Q 040887 175 AIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGY-S 252 (394)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~-~ 252 (394)
+++++|++.|.++....+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|. +
T Consensus 37 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 116 (253)
T 1yyh_A 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116 (253)
T ss_dssp ---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC
T ss_pred HHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 6666677777766656788899999999999999999999997644 6677889999999999999999999999987 8
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887 253 ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE 332 (394)
Q Consensus 253 ~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 332 (394)
++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++ ++.+|.
T Consensus 117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~ 188 (253)
T 1yyh_A 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------KDMQNN 188 (253)
T ss_dssp TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCT
T ss_pred ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCC
Confidence 9999999999999999999999999999987665 88999999999999999999999999999999 999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
.|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+++|+.+......
T Consensus 189 ~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 189 REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999988764443
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.4e-41 Score=279.20 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=205.7
Q ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchh
Q 040887 68 LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLT 147 (394)
Q Consensus 68 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~ 147 (394)
+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------------------------------------- 38 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------------------------------------- 38 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT--------------------------------------------
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC--------------------------------------------
Confidence 577889999999999999999999999999988764
Q ss_pred hhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCC
Q 040887 148 MAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSS 226 (394)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~ 226 (394)
..+..|.||||+|+..|+.+++++|++.+.. +..+..
T Consensus 39 ------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 76 (237)
T 3b7b_A 39 ------------------------------------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76 (237)
T ss_dssp ------------------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTT
T ss_pred ------------------------------------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC
Confidence 2344688999999999999999999987654 566788
Q ss_pred CCChHHHHHhcCCHHHHHHHHhcC-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVNG-YSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
|.||||.|+..++.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSG 155 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCC
Confidence 999999999999999999999998 899999999999999999999999999999987766 888999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||+++|+..+..+..
T Consensus 156 ~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 156 CVDIAEILLAAKCD-------LHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp CHHHHHHHHTTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred CHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999 99999999999999999999887654
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.9e-42 Score=280.38 Aligned_cols=218 Identities=22% Similarity=0.237 Sum_probs=135.7
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhh
Q 040887 39 LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENA 118 (394)
Q Consensus 39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~ 118 (394)
+..+.||||.||+.|+.+.+++|+..++..++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------------- 67 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--------------- 67 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC---------------
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC---------------
Confidence 34578999999999999999999999877788889999999999999999999999999887763
Q ss_pred cCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcH
Q 040887 119 MGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSP 198 (394)
Q Consensus 119 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (394)
.++..|.||
T Consensus 68 -----------------------------------------------------------------------~~~~~g~t~ 76 (231)
T 3aji_A 68 -----------------------------------------------------------------------DKDDAGWSP 76 (231)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred -----------------------------------------------------------------------CcCCCCCCH
Confidence 233346677
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 199 LSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVE 278 (394)
Q Consensus 199 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~ 278 (394)
||+|+..++.+++++|++.+ ++++.++..|.||||+|+..|+.+++++
T Consensus 77 L~~A~~~~~~~~v~~Ll~~g--------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 124 (231)
T 3aji_A 77 LHIAASAGXDEIVKALLVKG--------------------------------AHVNAVNQNGCTPLHYAASKNRHEIAVM 124 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTT--------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHcC--------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 77777666666666666543 3334444444455555555555555555
Q ss_pred HHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 040887 279 LLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR 358 (394)
Q Consensus 279 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 358 (394)
|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++|
T Consensus 125 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 195 (231)
T 3aji_A 125 LLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-------TNIQDTEGNTPLHLACDEERVEEAKFLVTQG- 195 (231)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred HHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-
Confidence 54443333 44444455555555555555555555555544 4445555555555555555555555555554
Q ss_pred CCCCCcccCCCcHHHHHHhhhhcch
Q 040887 359 SNPDLKNKQGMTAYKMALREYYMQT 383 (394)
Q Consensus 359 ad~~~~~~~g~t~l~~a~~~~~~~~ 383 (394)
++++.+|..|.||+++|.+.++.+.
T Consensus 196 a~~~~~~~~g~t~l~~A~~~~~~~i 220 (231)
T 3aji_A 196 ASIYIENKEEKTPLQVAKGGLGLIL 220 (231)
T ss_dssp CCSCCCCTTSCCHHHHSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHhhHHHHH
Confidence 5555555555555555544444333
No 21
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=297.62 Aligned_cols=279 Identities=19% Similarity=0.143 Sum_probs=243.8
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM 115 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 115 (394)
...+..|.|+||.||+.|+.+.+++|+...+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .
T Consensus 18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------~ 86 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-----------A 86 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------C
T ss_pred eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------c
Confidence 44667789999999999999999999998788899999999999999999999999999999999874 4
Q ss_pred hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195 (394)
Q Consensus 116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (394)
.+..|.||||.|+..+ +. +++++|++.|.+++ ..+..|
T Consensus 87 ~~~~g~t~L~~A~~~g------------------~~-----------------------~iv~~Ll~~g~~~~-~~~~~g 124 (351)
T 3utm_A 87 KDKGGLVPLHNACSYG------------------HY-----------------------EVTELLLKHGACVN-AMDLWQ 124 (351)
T ss_dssp CCTTCCCHHHHHHHTT------------------CH-----------------------HHHHHHHHTTCCTT-CCCTTC
T ss_pred cCCCCCcHHHHHHHCC------------------CH-----------------------HHHHHHHHCCCCCC-CCCCCC
Confidence 4667999999998776 22 89999999999887 577889
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHH
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHAN 274 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~ 274 (394)
.||||+|+..++.+++++|++.+.. ...+..+.+|++.++..+..+...+... ..++..++..+..+
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 192 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQAAREADLA 192 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccHH
Confidence 9999999999999999999987544 5667889999999988777766665543 23678889999999
Q ss_pred HHHHHHHhcCCCCccccCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887 275 VMVELLKEWRCPSLFVTDNGCNILHFAAKN---GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351 (394)
Q Consensus 275 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 351 (394)
.+..++...... ...+..|.||||+|+.. +..+++++|++.|++ ++.+|..|+||||+|+..|+.++++
T Consensus 193 ~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~g~~~~v~ 264 (351)
T 3utm_A 193 KVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-------VNEKNKDFMTPLHVAAERAHNDVME 264 (351)
T ss_dssp HHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-------cCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999998876555 55778899999999999 568999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
+|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus 265 ~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 300 (351)
T 3utm_A 265 VLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLL 300 (351)
T ss_dssp HHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999 999999999999999999999887764443
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=284.60 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=206.4
Q ss_pred CCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHH
Q 040887 5 LDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAA 84 (394)
Q Consensus 5 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 84 (394)
..|+||.|+..|+.+.++++...+.++ +.+|.+|.||||+||..|+.+++++|++.+. +++.+|..|.||||+|+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAV----NIITADHVSPLHEACLGGHLSCVKILLKHGA-QVNGVTADWHTPLFNAC 77 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCS----SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCC----CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH
Confidence 379999999999999999955555554 6689999999999999999999999999965 79999999999999999
Q ss_pred HcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhh
Q 040887 85 RAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDT 164 (394)
Q Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (394)
..|+.+++++|+++|++++.
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~~------------------------------------------------------------ 97 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQP------------------------------------------------------------ 97 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSSC------------------------------------------------------------
T ss_pred HcCCHHHHHHHHHCCCCCCC------------------------------------------------------------
Confidence 99999999999999887631
Q ss_pred hhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHH
Q 040887 165 IKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVC 243 (394)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~ 243 (394)
+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++
T Consensus 98 ---------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 150 (261)
T 2xai_A 98 ---------------------------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 150 (261)
T ss_dssp ---------------------------SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred ---------------------------CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHH
Confidence 12366777777777788888888776543 55567777888888888888888
Q ss_pred HHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCc-
Q 040887 244 YLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMT- 322 (394)
Q Consensus 244 ~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~- 322 (394)
++|++.|++++. +..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..+ +++++|++.+.....
T Consensus 151 ~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~ 226 (261)
T 2xai_A 151 KKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLM 226 (261)
T ss_dssp HHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHH
T ss_pred HHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhccccc--cHHHHHHhccCCccHH
Confidence 888888888874 778888888888888888888888886665 788888888888888555 488888888765211
Q ss_pred chhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887 323 MDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355 (394)
Q Consensus 323 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 355 (394)
....++.+|..|+||+|.|.+....+.++.++.
T Consensus 227 ~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 227 QLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp HHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred HHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 111266789999999999999888888777765
No 23
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-41 Score=290.87 Aligned_cols=266 Identities=24% Similarity=0.231 Sum_probs=192.5
Q ss_pred HHHHhccchhhhhccCCcc-----chhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887 11 EAAIRGNIDDFLFSDIPKQ-----DLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR 85 (394)
Q Consensus 11 ~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 85 (394)
.++..+..+.++....... ........++.+|.||||.||..|+.++|++|++.|. +++..+..|.||||+||.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA-DINYANVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC-CTTCBCTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCCHHHHHHH
Confidence 4566666666666111111 1111123356678999999999999999999999975 799999999999999999
Q ss_pred cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887 86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI 165 (394)
Q Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (394)
.|+.+++++|+++|++++. .+.
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~-----------~~~----------------------------------------------- 104 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQ-----------PDN----------------------------------------------- 104 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTC-----------CCT-----------------------------------------------
T ss_pred cCCHHHHHHHHHCCCCCCC-----------CCC-----------------------------------------------
Confidence 9999999999999998742 233
Q ss_pred hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHH
Q 040887 166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCY 244 (394)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~ 244 (394)
.|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..+..++++
T Consensus 105 ----------------------------~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 156 (299)
T 1s70_B 105 ----------------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156 (299)
T ss_dssp ----------------------------TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHH
T ss_pred ----------------------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHH
Confidence 344555555555555555555554322 333444555555555555554443
Q ss_pred HHH-hcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 040887 245 LLE-VNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTM 323 (394)
Q Consensus 245 ~L~-~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 323 (394)
.++ ..+.+++.....+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|++.|++
T Consensus 157 ~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d---- 224 (299)
T 1s70_B 157 NEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---- 224 (299)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC----
T ss_pred HHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC----
Confidence 332 334444333222222332 2345566666666566788899999999999999999999999999
Q ss_pred hhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887 324 DEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379 (394)
Q Consensus 324 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~ 379 (394)
++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+..
T Consensus 225 ---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 225 ---VNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp ---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSGG
T ss_pred ---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999997654
No 24
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-40 Score=273.73 Aligned_cols=216 Identities=21% Similarity=0.242 Sum_probs=177.2
Q ss_pred CchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCC
Q 040887 42 GSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGN 121 (394)
Q Consensus 42 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 121 (394)
|+||||+||+.|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.|++++.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----------------- 64 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL----------------- 64 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG-----------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-----------------
Confidence 789999999999999999999998866677899999999999999999999999998854320
Q ss_pred cHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040887 122 TALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSL 201 (394)
Q Consensus 122 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 201 (394)
....+..|.||||+
T Consensus 65 ------------------------------------------------------------------~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 65 ------------------------------------------------------------------DDYPDDSGWTPFHI 78 (228)
T ss_dssp ------------------------------------------------------------------GGCCCTTSCCHHHH
T ss_pred ------------------------------------------------------------------cccCCCCCCCHHHH
Confidence 00133456667666
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 040887 202 AIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLK 281 (394)
Q Consensus 202 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~ 281 (394)
|+..|+.+++++|++.+. +.+++..+..|.||||+|+..|+.+++++|++
T Consensus 79 A~~~~~~~~~~~Ll~~g~------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPL------------------------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp HHHHCCHHHHHHHHSSSS------------------------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCC------------------------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 666666666666655321 15667778888899999999999999999998
Q ss_pred hcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHH-hcCCC
Q 040887 282 EWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALL-RYGRS 359 (394)
Q Consensus 282 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~a 359 (394)
.+.+. +.++..|.||||+|+..|+.+++++|++.| ++ ++.+|..|+||||+|+..|+.+++++|+ ++| +
T Consensus 129 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a 199 (228)
T 2dzn_A 129 NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-A 199 (228)
T ss_dssp TTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-C
T ss_pred cCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C
Confidence 86655 778888999999999999999999999999 66 8889999999999999999999999999 777 9
Q ss_pred CCCCcccCCCcHHHHHHhhh
Q 040887 360 NPDLKNKQGMTAYKMALREY 379 (394)
Q Consensus 360 d~~~~~~~g~t~l~~a~~~~ 379 (394)
+++.+|..|+||+++|.+.+
T Consensus 200 ~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 200 EYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CSCCBCTTSCBGGGGCSSTT
T ss_pred CCCccCCCCCcHHHHHHHHH
Confidence 99999999999999997654
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-40 Score=275.40 Aligned_cols=191 Identities=20% Similarity=0.249 Sum_probs=166.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHH----h-CCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHH
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILR----S-LPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPI 264 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~----~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l 264 (394)
.+|..|.||||+|+..|+.+++++|++ . ...+..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 456678888888888888888888876 2 23455667788888888888888999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCC---CCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHH
Q 040887 265 HLACKNGHANVMVELLKEWRC---PSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHL 340 (394)
Q Consensus 265 ~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~ 340 (394)
|+|+..|+.+++++|++.++. ..+..+..|.||||+|+..++.+++++|++.|++ ++..+ ..|.||||+
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-------IDAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTTCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-------cccccccCCCcHHHH
Confidence 999999999999999998762 4577889999999999999999999999999999 88888 789999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 341 AALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 341 A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+......
T Consensus 157 A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 203 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLV 203 (241)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999 999999999999999999999877654443
No 26
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-42 Score=285.36 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=160.6
Q ss_pred hcCCCCchHHHHHHhcCCHHHHHHHHHhCCCC-------cccccCCCCCHHHHHHHcCcH-HHHHHHHhhccCCCCCCCC
Q 040887 37 KVLTDGSSLLHVAAKSGHGEITAKIAQYYPFL-------INKTNNQGDTPLHCAARAGKL-NTATALVDFAKHIPSTSQA 108 (394)
Q Consensus 37 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~~~~~~~~ 108 (394)
++|..+.+||+.||..|+.++|++||+.++.+ ++..+..|.|||+.|+..++. .++++|++.|++++
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn----- 80 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN----- 80 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-----
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-----
Confidence 36777889999999999999999999876532 455667788888888877664 47788888877764
Q ss_pred cchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCc
Q 040887 109 PVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLS 188 (394)
Q Consensus 109 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 188 (394)
T Consensus 81 -------------------------------------------------------------------------------- 80 (269)
T 4b93_B 81 -------------------------------------------------------------------------------- 80 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887 189 CCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA 267 (394)
Q Consensus 189 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a 267 (394)
.++.+|.||||+|+..|+.+++++|++.+.. ...+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|
T Consensus 81 -~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A 159 (269)
T 4b93_B 81 -VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA 159 (269)
T ss_dssp -CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred -CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 3455688888888888888888888886543 55667788899999988888999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC-
Q 040887 268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH- 346 (394)
Q Consensus 268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~- 346 (394)
+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++++
T Consensus 160 ~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-------~~~~d~~G~TpL~~A~~~~~i 231 (269)
T 4b93_B 160 CSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-------VQVLNKRQRTAVDCAEQNSKI 231 (269)
T ss_dssp HHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-------SCCCCTTSCCSGGGSCTTCHH
T ss_pred HHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHhCCcH
Confidence 9999999999999987665 88889999999999999999999999999998 89999999999999988775
Q ss_pred HHHHHHHHhcC
Q 040887 347 SQVVYALLRYG 357 (394)
Q Consensus 347 ~~~~~~Ll~~g 357 (394)
.+++++|...+
T Consensus 232 ~~lL~~l~~~~ 242 (269)
T 4b93_B 232 MELLQVVPSCV 242 (269)
T ss_dssp HHHTTC-----
T ss_pred HHHHHHHHHhc
Confidence 34444444444
No 27
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-41 Score=297.28 Aligned_cols=278 Identities=17% Similarity=0.069 Sum_probs=224.3
Q ss_pred CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887 6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR 85 (394)
Q Consensus 6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 85 (394)
.|+||+||..|+.+.++++...+.++ +.+|.+|.||||+||..|+.++|++|++.++ +..+..|.||||+|+.
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~ 93 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSP----TIQNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCT----TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCc----cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHHHHHH
Confidence 68999999999999999966555555 6689999999999999999999999999977 3334579999999999
Q ss_pred cCcHHHHHHHHhh----ccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccch
Q 040887 86 AGKLNTATALVDF----AKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI 161 (394)
Q Consensus 86 ~~~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (394)
.|+.+++++|++. |++++. .. .......+..
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~~---------------------~~-~~~~~~~~~~----------------------- 128 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPES---------------------LL-NECDEREVNE----------------------- 128 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHH---------------------HH-TCCCCCCEEE-----------------------
T ss_pred cCCHHHHHHHHHhccccCCCHHH---------------------HH-hhcchHhhhh-----------------------
Confidence 9999999999998 443210 00 0000000000
Q ss_pred hhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcC
Q 040887 162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMG--NTDVLEYILRSLPS-GISWSSGKSPLQVATKKR 238 (394)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~ 238 (394)
.. ....+..|.||||+|+..| +.+++++|++.+.. +..+..|.||||+|+..|
T Consensus 129 -----------------------~~-~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 184 (364)
T 3ljn_A 129 -----------------------IG-SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184 (364)
T ss_dssp -----------------------ET-TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT
T ss_pred -----------------------hc-cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 00 0135667899999999999 99999999997644 667788999999999999
Q ss_pred CHHHHHHHHhcCcc-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHH
Q 040887 239 NLGVCYLLEVNGYS-----ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAI 313 (394)
Q Consensus 239 ~~~~~~~L~~~g~~-----~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 313 (394)
+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|
T Consensus 185 ~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~L 263 (364)
T 3ljn_A 185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKEL 263 (364)
T ss_dssp CHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHH
Confidence 99999999999998 9999999999999999999999999999987776 88999999999999999999999999
Q ss_pred HhCCCCCCcch-----hhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887 314 IEIPGTNMTMD-----EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361 (394)
Q Consensus 314 l~~~~~~~~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~ 361 (394)
+++|++..... ......+..++||++.|+..++.+.+..|+..+ ++.
T Consensus 264 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~-~~~ 315 (364)
T 3ljn_A 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDE 315 (364)
T ss_dssp HHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH-HHH
T ss_pred HHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH-HHH
Confidence 99987620000 001124567899999999999888888888877 443
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=269.05 Aligned_cols=233 Identities=14% Similarity=0.136 Sum_probs=198.7
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM 115 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 115 (394)
...|..|.||||.||..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|++.|++++.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----------- 70 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ----------- 70 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCC-CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh-----------
Confidence 3468889999999999999999999999975 7899999999999999999999999999999877531
Q ss_pred hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195 (394)
Q Consensus 116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (394)
..+..|
T Consensus 71 --------------------------------------------------------------------------~~~~~~ 76 (240)
T 3eu9_A 71 --------------------------------------------------------------------------LGGDLN 76 (240)
T ss_dssp --------------------------------------------------------------------------CBTTTT
T ss_pred --------------------------------------------------------------------------hcCCcC
Confidence 122346
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC-H
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH-A 273 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~-~ 273 (394)
.|||++|+..++.+++++|++.+.. +..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..+. .
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 156 (240)
T 3eu9_A 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156 (240)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence 7888888888888888888886543 5556778899999999999999999999999999999999999999997666 7
Q ss_pred HHHHHHHHhcCCCCccccC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 274 NVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 352 (394)
+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 157 ~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 157 DPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-------VDAQNIKGESALDLAKQRKNVWMINH 228 (240)
T ss_dssp TTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 8888888887766 55665 899999999999999999999999998 89999999999999999999999999
Q ss_pred HHhcCCCCCCC
Q 040887 353 LLRYGRSNPDL 363 (394)
Q Consensus 353 Ll~~g~ad~~~ 363 (394)
|++.+ ++...
T Consensus 229 L~~~~-~~~~~ 238 (240)
T 3eu9_A 229 LQEAR-QAKGY 238 (240)
T ss_dssp HHHHC------
T ss_pred HHHhh-hccCc
Confidence 99998 65543
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=277.40 Aligned_cols=224 Identities=25% Similarity=0.299 Sum_probs=173.5
Q ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhh
Q 040887 70 NKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMA 149 (394)
Q Consensus 70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~ 149 (394)
..+|..+.|||+.||..|+.++|++||+.|++.......
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~----------------------------------------- 43 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED----------------------------------------- 43 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccc-----------------------------------------
Confidence 345777889999999999999999999998753211000
Q ss_pred hhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHhCC-CCCCCCCC
Q 040887 150 HSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNT-DVLEYILRSLP-SGISWSSG 227 (394)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~-~~~~~~~~ 227 (394)
.....+..+.|||+.|+..+.. .++++|++.+. .+..+..|
T Consensus 44 -------------------------------------~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 44 -------------------------------------TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp --------------------------------------------------------------------CCCCTTCCCTTS
T ss_pred -------------------------------------cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 0002344677888888876664 47788887654 46778899
Q ss_pred CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA 307 (394)
Q Consensus 228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 307 (394)
.||||+|+..|+.+++++|++.|++++.++..|.||+|.|+..++.+++++|++.+.+. +.+|..|.||||+|+..|+.
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999987766 88999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380 (394)
Q Consensus 308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~ 380 (394)
+++++|++.|++ +|.++..|+||||+|+..|+.+++++|+++| +|++.+|..|+||||+|++++.
T Consensus 166 ~~v~~Ll~~gad-------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 166 ELVALLLQHGAS-------INASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp GGHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHHCCCC-------CCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999 9999999999999999999999999999999 9999999999999999988765
No 30
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-38 Score=261.96 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887 194 EDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271 (394)
Q Consensus 194 ~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~ 271 (394)
.+.+||+.|+..|+.+.++++++.... ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 467889999999999999988876543 455678899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887 272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 351 (394)
+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++ ++.++..|.||||+|+..|+.++++
T Consensus 85 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 85 XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-------PDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 999999999987766 78899999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887 352 ALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387 (394)
Q Consensus 352 ~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~ 387 (394)
+|+++| ++++.+|..|.||||+|+..|+.+.....
T Consensus 157 ~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 191 (231)
T 3aji_A 157 ILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFL 191 (231)
T ss_dssp HHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 999999 99999999999999999999987765443
No 31
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.3e-39 Score=261.80 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=127.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887 194 EDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271 (394)
Q Consensus 194 ~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~ 271 (394)
.|.||||+|+..++.+++++|++.+. .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|
T Consensus 57 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 136 (223)
T 2f8y_A 57 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136 (223)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC
Confidence 34455555555555555555554432 2333455666667777777777777777778888889999999999999999
Q ss_pred CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887 272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 351 (394)
+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++
T Consensus 137 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~i~~ 208 (223)
T 2f8y_A 137 NVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-------RDITDHMDRLPRDIAQERMHHDIVR 208 (223)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------CccccccCCCHHHHHHHhcchHHHH
Confidence 999999999986665 88899999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHhcCCCC
Q 040887 352 ALLRYGRSN 360 (394)
Q Consensus 352 ~Ll~~g~ad 360 (394)
+|+++| +.
T Consensus 209 ~L~~~g-~~ 216 (223)
T 2f8y_A 209 LLDEYN-LV 216 (223)
T ss_dssp HHHHTT-CS
T ss_pred HHHHcC-CC
Confidence 999999 54
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-39 Score=275.49 Aligned_cols=225 Identities=16% Similarity=0.114 Sum_probs=171.1
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRM 115 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 115 (394)
+.+|.+|.||||+||..|+.+++++|++.+. +++.. +|+||||+|+..|+.+++++|+++|++++
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------ 89 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS------------ 89 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG-GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT------------
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence 4466666666666666666666666666643 44544 36666666666666666666666666543
Q ss_pred hhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCC
Q 040887 116 ENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIED 195 (394)
Q Consensus 116 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (394)
.++..|
T Consensus 90 --------------------------------------------------------------------------~~d~~g 95 (285)
T 3kea_A 90 --------------------------------------------------------------------------QFDDKG 95 (285)
T ss_dssp --------------------------------------------------------------------------CCCTTS
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 345567
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCC-CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSLPS-GISWSSG-KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA 273 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~ 273 (394)
.||||+|+..|+.+++++|++.+.. +..+..| .||||+|+..++.+++++|++.|.+.... ..|.||||+|+..|+.
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV 174 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH
Confidence 7888888888888888888877543 4455666 68888888888888888888888766322 2789999999999999
Q ss_pred HHHHHHHHhcCCCCccccCCCchH-HHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 274 NVMVELLKEWRCPSLFVTDNGCNI-LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 352 (394)
+++++|++.+.+. +.++..|.|| ||+|+..++.+++++|+++|++ ++.+| +.|+..|+.+++++
T Consensus 175 ~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-------~~~~~-------~~a~~~~~~~iv~~ 239 (285)
T 3kea_A 175 DMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------IYSAN-------LENVLLDDAEIAKM 239 (285)
T ss_dssp HHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-------STTTT-------GGGGTTTCHHHHHH
T ss_pred HHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-------CCCCC-------hhhhhcCCHHHHHH
Confidence 9999999987765 8889999997 9999999999999999999998 77776 36677899999999
Q ss_pred HHhcCCCCCCCccc
Q 040887 353 LLRYGRSNPDLKNK 366 (394)
Q Consensus 353 Ll~~g~ad~~~~~~ 366 (394)
|+++| +++...+.
T Consensus 240 Ll~~g-~~~~~~~~ 252 (285)
T 3kea_A 240 IIEKH-VEYKSDSY 252 (285)
T ss_dssp HHHHH-HHHTTCTT
T ss_pred HHHcC-CCCCCccc
Confidence 99999 77655443
No 33
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-40 Score=286.65 Aligned_cols=271 Identities=16% Similarity=0.072 Sum_probs=203.6
Q ss_pred cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHh
Q 040887 52 SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFML 131 (394)
Q Consensus 52 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~ 131 (394)
....++|++|++.|. +++..+..|.|+++ |+.+++++|+++|++++. ++++.++...
T Consensus 29 ~~~~dlv~~ll~~ga-~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-----------------~~~~~a~~~~ 85 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPL-KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-----------------QEMPTSLNND 85 (327)
T ss_dssp ECCTTCCCSTTTSSC-CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred hhcCchHHHHhhCCc-ccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-----------------ccchHhhhcc
Confidence 566788999999965 79999999999988 999999999999998632 2333332210
Q ss_pred CccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHH
Q 040887 132 GRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVL 211 (394)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 211 (394)
... . ..............+......+++++|++.|.+++..++..|.||||+|+..|+.+++
T Consensus 86 ~~~---------------~---~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v 147 (327)
T 1sw6_A 86 SSN---------------R---NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV 147 (327)
T ss_dssp ------------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHH
T ss_pred ccc---------------c---cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHH
Confidence 000 0 0000000011122344555668999999999999965899999999999999999999
Q ss_pred HHHHHhCCC-CCCCCCCCChHHHHHhcCC---HHHHHHHHhcC-ccccccCCCCCcHHHHHHH----cCCHHHHHHHHHh
Q 040887 212 EYILRSLPS-GISWSSGKSPLQVATKKRN---LGVCYLLEVNG-YSALKKNKETLYPIHLACK----NGHANVMVELLKE 282 (394)
Q Consensus 212 ~~ll~~~~~-~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~g-~~~~~~~~~g~~~l~~a~~----~~~~~~v~~Ll~~ 282 (394)
++|++.+.. +..+..|.||||+|+..|+ .++++.|++.+ .+++.++..|.||||+|+. .|+.+++++|++.
T Consensus 148 ~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 148 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp HHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 999998654 6677899999999999988 56666666665 7799999999999999999 8999999999987
Q ss_pred c-------------------CCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887 283 W-------------------RCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343 (394)
Q Consensus 283 ~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 343 (394)
. ...++.++..|.||||+|+. +++|++.+ ++.+|..|+||||+|+.
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---------~n~~d~~G~TpLh~A~~ 292 (327)
T 1sw6_A 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---------LNAQDSNGDTCLNIAAR 292 (327)
T ss_dssp HHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT---------TTCCCTTSCCHHHHHHH
T ss_pred HHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---------CCCCCCCCCCHHHHHHH
Confidence 3 45558889999999999985 99999983 88999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhh
Q 040887 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREY 379 (394)
Q Consensus 344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~ 379 (394)
.|+.+++++|+++| +|++.+|..|+||||+|++.|
T Consensus 293 ~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 293 LGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred cCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999 999999999999999998764
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.9e-39 Score=272.66 Aligned_cols=260 Identities=19% Similarity=0.124 Sum_probs=180.8
Q ss_pred cCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHH
Q 040887 4 VLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCA 83 (394)
Q Consensus 4 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 83 (394)
...|+||.||..|+.+.++++...+.+ ...++.++..|.||||+||..|+.+++++|+++|+ +++.++..|+||||+|
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A 85 (282)
T 1oy3_D 8 DGDTALHLAVIHQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA-GVLVAERGGHTALHLA 85 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHHHTT-SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCC-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHH
Confidence 458999999999999999995433332 12257789999999999999999999999999976 7999999999999999
Q ss_pred HHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhh
Q 040887 84 ARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDD 163 (394)
Q Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (394)
+..|+.+++++|++.|++.......... .. .
T Consensus 86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~----~~-------------~-------------------------------- 116 (282)
T 1oy3_D 86 CRVRAHTCACVLLQPRPSHPRDASDTYL----TQ-------------S-------------------------------- 116 (282)
T ss_dssp TTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------------
T ss_pred HHcCCcchhHhhhccCCCCchhhHHHHh----hc-------------c--------------------------------
Confidence 9999999999999999875422111000 00 0
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH-H-hCCCCCCCCCCCChHHHHHhcCCHH
Q 040887 164 TIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYIL-R-SLPSGISWSSGKSPLQVATKKRNLG 241 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll-~-~~~~~~~~~~~~~~l~~a~~~~~~~ 241 (394)
.. .....+.++++.++..+....+..++ . ....+..+..|.||||+|+..|+.+
T Consensus 117 ---------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 172 (282)
T 1oy3_D 117 ---------------------QD---CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172 (282)
T ss_dssp ---------------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred ---------------------cc---cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH
Confidence 00 01112334444444333322222111 1 1223455677888888888888888
Q ss_pred HHHHHHhcCccccccCCC-CCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCC
Q 040887 242 VCYLLEVNGYSALKKNKE-TLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTN 320 (394)
Q Consensus 242 ~~~~L~~~g~~~~~~~~~-g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 320 (394)
++++|++.|++++..+.. |.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++
T Consensus 173 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~- 250 (282)
T 1oy3_D 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAP- 250 (282)
T ss_dssp HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC-
T ss_pred HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHHcCCC-
Confidence 999999999999988854 999999999999999999999997665 88999999999999999999999999999999
Q ss_pred CcchhhccccCCCCCcHHHHHHHcCC
Q 040887 321 MTMDEVVNKMDEDGNTPLHLAALHGH 346 (394)
Q Consensus 321 ~~~~~~~~~~~~~g~t~L~~A~~~~~ 346 (394)
++.+|..|.|||++|.....
T Consensus 251 ------~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 251 ------EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp ------CCCCC---------------
T ss_pred ------cCcCCCcccccccccCCccc
Confidence 99999999999999987653
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=257.18 Aligned_cols=227 Identities=22% Similarity=0.257 Sum_probs=203.6
Q ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhh
Q 040887 69 INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTM 148 (394)
Q Consensus 69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~ 148 (394)
++..|..|.|||+.|+..|+.+++++|++.|++++
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~--------------------------------------------- 36 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR--------------------------------------------- 36 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT---------------------------------------------
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCcC---------------------------------------------
Confidence 34567889999999999999999999999988763
Q ss_pred hhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCC
Q 040887 149 AHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSG--ISWSS 226 (394)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~--~~~~~ 226 (394)
..+..|.||||+|+..|+.+++++|++.+... .....
T Consensus 37 -----------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 37 -----------------------------------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp -----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred -----------------------------------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence 24456889999999999999999999987653 33345
Q ss_pred CCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCC
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGH 306 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 306 (394)
+.||||.|+..++.+++++|++.|++++.++..|.||||.|+..|+.+++++|++.+... +..+..|.||||+|+..++
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC
Confidence 899999999999999999999999999999999999999999999999999999987765 8889999999999997766
Q ss_pred -HHHHHHHHhCCCCCCcchhhccccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 307 -ADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 307 -~~~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
.+++++|++.|++ ++..+. .|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.|+.+..
T Consensus 155 ~~~~~~~L~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 155 SVDPTRLLLTFNVS-------VNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp SSTTHHHHHHTTCC-------TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHhcCCC-------cchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 8999999999999 888887 9999999999999999999999999 99999999999999999999998876
Q ss_pred hhHHHh
Q 040887 385 IAEKQE 390 (394)
Q Consensus 385 ~~~~~~ 390 (394)
....+.
T Consensus 227 ~~L~~~ 232 (240)
T 3eu9_A 227 NHLQEA 232 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.7e-38 Score=258.58 Aligned_cols=220 Identities=21% Similarity=0.202 Sum_probs=180.9
Q ss_pred CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCC-CCccc-ccCCCCCHHHHH
Q 040887 6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYP-FLINK-TNNQGDTPLHCA 83 (394)
Q Consensus 6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~~g~t~L~~A 83 (394)
+|+||.|+..|+.+.++++...+.+. ....|.+|.||||+|+..|+.+++++|++.++ .+++. .+..|.||||+|
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGG---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccc---cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 78999999999999999954444333 45689999999999999999999999999973 24555 889999999999
Q ss_pred HHcCcHHHHHHHHhhc--cCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccch
Q 040887 84 ARAGKLNTATALVDFA--KHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAI 161 (394)
Q Consensus 84 ~~~~~~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (394)
+..|+.+++++|++.| ++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~---------------------------------------------------------- 101 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLN---------------------------------------------------------- 101 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTT----------------------------------------------------------
T ss_pred HHcCCHHHHHHHHhCCCCcccc----------------------------------------------------------
Confidence 9999999999999987 3321
Q ss_pred hhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHH
Q 040887 162 DDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLG 241 (394)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~ 241 (394)
..+..|.||||+|+..++.++
T Consensus 102 ----------------------------~~~~~g~t~L~~A~~~~~~~~------------------------------- 122 (228)
T 2dzn_A 102 ----------------------------KITNQGVTCLHLAVGKKWFEV------------------------------- 122 (228)
T ss_dssp ----------------------------CCCTTCCCHHHHHHHTTCHHH-------------------------------
T ss_pred ----------------------------cCCcCCCCHHHHHHHcCCHhH-------------------------------
Confidence 233345555555555555554
Q ss_pred HHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHH-hCCCCC
Q 040887 242 VCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAII-EIPGTN 320 (394)
Q Consensus 242 ~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~~~~~ 320 (394)
+++|++.|++++.++..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+ +.|++
T Consensus 123 -~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~- 200 (228)
T 2dzn_A 123 -SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE- 200 (228)
T ss_dssp -HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-
T ss_pred -HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-
Confidence 455555677788888999999999999999999999999986666889999999999999999999999999 88998
Q ss_pred CcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887 321 MTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY 356 (394)
Q Consensus 321 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 356 (394)
++.+|..|+|||++|+.. +++++|+++
T Consensus 201 ------~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 201 ------YDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp ------SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred ------CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 899999999999999754 566777653
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.7e-38 Score=266.51 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=191.6
Q ss_pred hcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHH
Q 040887 51 KSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFM 130 (394)
Q Consensus 51 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~ 130 (394)
+..+.+.+..|+..+ +++.+|..|.||||+|+..|+.+++++|++.|++++.
T Consensus 8 ~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------------------- 59 (285)
T 3kea_A 8 NTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------------------- 59 (285)
T ss_dssp GGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC--------------------------
T ss_pred HhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--------------------------
Confidence 344555555555543 4799999999999999999999999999999887631
Q ss_pred hCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHH
Q 040887 131 LGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDV 210 (394)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 210 (394)
. +|.||||+|+..|+.++
T Consensus 60 ------------------------------------------------------------~--~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 60 ------------------------------------------------------------L--ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp ------------------------------------------------------------C--TTCCHHHHHTTSSSCHH
T ss_pred ------------------------------------------------------------C--CCCCHHHHHHHcCCHHH
Confidence 1 37899999999999999
Q ss_pred HHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCC-CcHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 040887 211 LEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKET-LYPIHLACKNGHANVMVELLKEWRCPSL 288 (394)
Q Consensus 211 ~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g-~~~l~~a~~~~~~~~v~~Ll~~~~~~~~ 288 (394)
+++|++.+.. +..+..|.||||+|+..|+.+++++|++.|++++.++..| .||||+|+..|+.+++++|++.++....
T Consensus 78 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 157 (285)
T 3kea_A 78 VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD 157 (285)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC
T ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Confidence 9999997654 5677889999999999999999999999999999999999 8999999999999999999999876522
Q ss_pred cccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCCccc
Q 040887 289 FVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTP-LHLAALHGHSQVVYALLRYGRSNPDLKNK 366 (394)
Q Consensus 289 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~ 366 (394)
...|.||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+..|+.+++++|+++| ++++.+|.
T Consensus 158 --~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-------~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~ 226 (285)
T 3kea_A 158 --LAILLSCIHITIKNGHVDMMILLLDYMTS-------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL 226 (285)
T ss_dssp --CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-------TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG
T ss_pred --ccCCccHHHHHHHcChHHHHHHHHHcCCC-------CCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh
Confidence 12899999999999999999999999998 99999999998 99999999999999999999 99999885
No 38
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2e-39 Score=267.29 Aligned_cols=222 Identities=21% Similarity=0.212 Sum_probs=185.1
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhCCC---CcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchh
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYYPF---LINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDL 112 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 112 (394)
+.+|.+|.||||+||..|+.+++++|++.+.. +++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------- 72 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE--------- 72 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC---------
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 34789999999999999999999999998653 689999999999999999999999999999988864
Q ss_pred hhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccC
Q 040887 113 LRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKN 192 (394)
Q Consensus 113 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 192 (394)
.++
T Consensus 73 -----------------------------------------------------------------------------~~~ 75 (236)
T 1ikn_D 73 -----------------------------------------------------------------------------LRD 75 (236)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------CcC
Confidence 234
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887 193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH 272 (394)
Q Consensus 193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~ 272 (394)
..|.||||+|+..++.+++++|++.+.... ....++..+..|.||||+|+..|+
T Consensus 76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------------------------~~~~~~~~~~~g~t~L~~A~~~~~ 129 (236)
T 1ikn_D 76 FRGNTPLHLACEQGCLASVGVLTQSCTTPH--------------------------LHSILKATNYNGHTCLHLASIHGY 129 (236)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHSTTTTS--------------------------SSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccchh--------------------------HHHHhhccCCCCCCHHHHHHHcCC
Confidence 467888888888888888888887653311 112256677889999999999999
Q ss_pred HHHHHHHHHhcCCCCccccC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887 273 ANVMVELLKEWRCPSLFVTD-NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351 (394)
Q Consensus 273 ~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 351 (394)
.+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 130 ~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 130 LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-------VNRVTYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------SCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcccCCCCCHHHHHHccCchHHHH
Confidence 99999999988776 66776 899999999999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCCCC--CcccCCCcHHHHHHhh
Q 040887 352 ALLRYGRSNPD--LKNKQGMTAYKMALRE 378 (394)
Q Consensus 352 ~Ll~~g~ad~~--~~~~~g~t~l~~a~~~ 378 (394)
+|+++| +++. .++..|.||.+.+...
T Consensus 202 ~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 202 QLGQLT-LENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHTTS-CGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHcc-hhhhhcCCccchHHHHhhhccc
Confidence 999999 8776 8899999998876544
No 39
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-36 Score=244.55 Aligned_cols=195 Identities=25% Similarity=0.296 Sum_probs=172.6
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhh
Q 040887 39 LTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENA 118 (394)
Q Consensus 39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~ 118 (394)
+..+.||||.||..|+.+.+++|+..++.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------------- 66 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN--------------- 66 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------------
Confidence 35688999999999999999999999888899999999999999999999999999999988864
Q ss_pred cCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcH
Q 040887 119 MGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSP 198 (394)
Q Consensus 119 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (394)
..+..|.||
T Consensus 67 -----------------------------------------------------------------------~~~~~g~t~ 75 (201)
T 3hra_A 67 -----------------------------------------------------------------------LQNSISDSP 75 (201)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred -----------------------------------------------------------------------CCCCCCCCH
Confidence 234457788
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 199 LSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVE 278 (394)
Q Consensus 199 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~ 278 (394)
||+|+..++.+++++|++. .+.+++..+..|.||||+|+..|+.+++++
T Consensus 76 l~~A~~~~~~~~~~~Ll~~-------------------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 124 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKH-------------------------------ATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHH-------------------------------SCCCTTCCCTTSCCSHHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc-------------------------------cCcccccccCCCCcHHHHHHHcCCHHHHHH
Confidence 8888888888888877754 345677788889999999999999999999
Q ss_pred HHHhcCCCCccccCCCchHHHHHHHcCC-----HHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887 279 LLKEWRCPSLFVTDNGCNILHFAAKNGH-----ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 279 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 353 (394)
|++.++..++..+..|.||||+|+..++ .+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-------QSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-------CCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 9999866678899999999999999988 9999999999999 899999999999999999999999999
Q ss_pred HhcC
Q 040887 354 LRYG 357 (394)
Q Consensus 354 l~~g 357 (394)
+++|
T Consensus 198 l~~G 201 (201)
T 3hra_A 198 AQYN 201 (201)
T ss_dssp HTCC
T ss_pred HhcC
Confidence 9986
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.7e-37 Score=251.67 Aligned_cols=221 Identities=18% Similarity=0.175 Sum_probs=175.4
Q ss_pred CCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887 41 DGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120 (394)
Q Consensus 41 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 120 (394)
.|.||||+||+.|+.+++++|++..+.+++.+|..|+||||+|+..|+.+++++|++.|+++....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------- 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-------------- 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC--------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc--------------
Confidence 489999999999999999999998666899999999999999999999999999999987642100
Q ss_pred CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887 121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS 200 (394)
Q Consensus 121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 200 (394)
....+..|.||||
T Consensus 68 -------------------------------------------------------------------~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 68 -------------------------------------------------------------------MTSELYEGQTALH 80 (232)
T ss_dssp -------------------------------------------------------------------CCSTTTTTCCHHH
T ss_pred -------------------------------------------------------------------ccccCCCCcCHHH
Confidence 0134556888888
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040887 201 LAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELL 280 (394)
Q Consensus 201 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll 280 (394)
+|+..|+.+++++|++.+....... ..+.+ ....+..+..|.||||+|+..|+.+++++|+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~~~~~------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 141 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARA-TGSVF------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCC-CSGGG------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCccc-CCcce------------------eecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888754422211 11111 1124456678999999999999999999999
Q ss_pred HhcCCCCccccCCCchHHHHHHHcCCHHHH----HHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 040887 281 KEWRCPSLFVTDNGCNILHFAAKNGHADMV----KAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRY 356 (394)
Q Consensus 281 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 356 (394)
+.+.+. +.+|..|.||||+|+..++.+++ ++|++.|++... ..+.+.+|..|+||||+|+..|+.+++++|+++
T Consensus 142 ~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~-~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 142 EHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL-KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS-CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh-hhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 987665 88899999999999999999988 999999987210 111268899999999999999999999999999
Q ss_pred CCCCCCCc
Q 040887 357 GRSNPDLK 364 (394)
Q Consensus 357 g~ad~~~~ 364 (394)
| +++...
T Consensus 220 g-~~~~~~ 226 (232)
T 2rfa_A 220 R-KHIAAA 226 (232)
T ss_dssp H-HHC---
T ss_pred C-ccchhh
Confidence 9 555443
No 41
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.9e-37 Score=250.90 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=191.1
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCc
Q 040887 173 LVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGY 251 (394)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~ 251 (394)
..+++++|++.|.++....+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.+.
T Consensus 3 ~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 82 (223)
T 2f8y_A 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82 (223)
T ss_dssp --CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred cHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 346778889999999877789999999999999999999999997644 6677889999999999999999999999987
Q ss_pred -cccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhcccc
Q 040887 252 -SALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKM 330 (394)
Q Consensus 252 -~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 330 (394)
+++..+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~ 154 (223)
T 2f8y_A 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------KDMQ 154 (223)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-------TTCC
T ss_pred CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCCc
Confidence 88999999999999999999999999999987665 88899999999999999999999999999999 9999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887 331 DEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQ 389 (394)
Q Consensus 331 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 389 (394)
|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.++.+......+
T Consensus 155 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 155 NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999998877655444
No 42
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3e-37 Score=263.86 Aligned_cols=246 Identities=20% Similarity=0.248 Sum_probs=188.6
Q ss_pred CHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHH
Q 040887 6 DPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAAR 85 (394)
Q Consensus 6 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 85 (394)
.++|+.||..|+++.++++...+.++ +..|.+|.||||+||..|+.+++++|++.|+ +++.+|..|.||||+|+.
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADI----NYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCT----TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCC----cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHH
Confidence 58999999999999999955555554 6689999999999999999999999999965 799999999999999999
Q ss_pred cCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhh
Q 040887 86 AGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTI 165 (394)
Q Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (394)
.|+.+++++|+++|++++. .+..|.
T Consensus 116 ~g~~~~v~~Ll~~g~~~~~-----------~~~~g~-------------------------------------------- 140 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHVGA-----------VNSEGD-------------------------------------------- 140 (299)
T ss_dssp HTCHHHHHHHHHTTCCTTC-----------CCTTSC--------------------------------------------
T ss_pred cCCHHHHHHHHhCCCCCCC-----------cCCCCC--------------------------------------------
Confidence 9999999999999988642 233344
Q ss_pred hhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCC-HHHHH
Q 040887 166 KTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRN-LGVCY 244 (394)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~ 244 (394)
|||++|+..++.++++.++........ .......... ..+..
T Consensus 141 -------------------------------t~l~~A~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~~~~~~~~ 183 (299)
T 1s70_B 141 -------------------------------TPLDIAEEEAMEELLQNEVNRQGVDIE------AARKEEERIMLRDARQ 183 (299)
T ss_dssp -------------------------------CHHHHCCSHHHHHHHHHHHHHHTCCHH------HHHHHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHhcchHHHHHHHHhhcCCCch------hhhhhhhhHHHHHHHH
Confidence 455555444455555554443211100 0000000000 12334
Q ss_pred HHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcch
Q 040887 245 LLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMD 324 (394)
Q Consensus 245 ~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 324 (394)
++..........+..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----- 257 (299)
T 1s70_B 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD----- 257 (299)
T ss_dssp HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----
T ss_pred HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-----
Confidence 455555555567788999999999999999999999987665 88999999999999999999999999999999
Q ss_pred hhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887 325 EVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357 (394)
Q Consensus 325 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 357 (394)
++.+|..|+||||+|+.. ..+.++.|++..
T Consensus 258 --~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~~ 287 (299)
T 1s70_B 258 --MEAVNKVGQTAFDVADED-ILGYLEELQKKQ 287 (299)
T ss_dssp --TTCCCTTSCCTTTSCCSG-GGHHHHHHHHHT
T ss_pred --CCCcCCCCCCHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999764 456666666654
No 43
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=9.3e-37 Score=257.01 Aligned_cols=237 Identities=17% Similarity=0.145 Sum_probs=163.7
Q ss_pred hhcCCCCchHHHHHHhcCCHHHHHHHHHhC---CCCcc----cccCCCCCHHHHHHHc---CcHHHHHHHHhhccCCCCC
Q 040887 36 EKVLTDGSSLLHVAAKSGHGEITAKIAQYY---PFLIN----KTNNQGDTPLHCAARA---GKLNTATALVDFAKHIPST 105 (394)
Q Consensus 36 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~---~~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~ 105 (394)
+..|.+|.||||+||+.|+.++|+.|++.+ +.+++ ..+..|+||||+|+.. |+.+++++|++.|++++.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~- 85 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS- 85 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-
Confidence 458899999999999999999999999842 33343 4578999999999987 999999999999876421
Q ss_pred CCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCC
Q 040887 106 SQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDP 185 (394)
Q Consensus 106 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 185 (394)
++.++....
T Consensus 86 -----------------------------------------------------------------------~~~~i~~~~ 94 (273)
T 2pnn_A 86 -----------------------------------------------------------------------LKQFVNASY 94 (273)
T ss_dssp -----------------------------------------------------------------------HHHHHTCCC
T ss_pred -----------------------------------------------------------------------hhHHhhccc
Confidence 001111100
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHH
Q 040887 186 KLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIH 265 (394)
Q Consensus 186 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~ 265 (394)
...+..|.||||+|+..|+.+++++|++.+........+. . ....+....+..|.||||
T Consensus 95 ---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~-----------------~~~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 95 ---TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD-F-----------------FKKTKGRPGFYFGELPLS 153 (273)
T ss_dssp ---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG-G-----------------GSSCSSSCCCCSCBSHHH
T ss_pred ---ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc-c-----------------cccccccccccCCCCHHH
Confidence 0234457777777777777777777776543311111100 0 000122233447999999
Q ss_pred HHHHcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHHcCC---------HHHHHHHHhCCCCCCcchhhcc-----
Q 040887 266 LACKNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAKNGH---------ADMVKAIIEIPGTNMTMDEVVN----- 328 (394)
Q Consensus 266 ~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~----- 328 (394)
+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++ .+++++|++.|++ ++
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~-------~n~~~~~ 225 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK-------LHPTLKL 225 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-------HCTTCCG
T ss_pred HHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh-------ccccccc
Confidence 9999999999999999 5544 48899999999999999888 8999999999988 65
Q ss_pred --ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHH
Q 040887 329 --KMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYK 373 (394)
Q Consensus 329 --~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~ 373 (394)
.+|..|+||||+|+..|+.+++++|+++|..||......+.+|-+
T Consensus 226 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 226 EEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred ccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 589999999999999999999999999994499998888887754
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.4e-35 Score=245.11 Aligned_cols=216 Identities=16% Similarity=0.137 Sum_probs=163.3
Q ss_pred CCchHHHHHHhcCCHH----HHHHHHHhCCCCccc----ccCCCCCHHHHHHHc---CcHHHHHHHHhhccCCCCCCCCc
Q 040887 41 DGSSLLHVAAKSGHGE----ITAKIAQYYPFLINK----TNNQGDTPLHCAARA---GKLNTATALVDFAKHIPSTSQAP 109 (394)
Q Consensus 41 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~~ 109 (394)
.|+||||+||..|+.+ ++++|++.+. +++. .|..|+||||+|+.. |+.+++++|++.|++++.....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~-~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~- 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK-YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL- 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG-
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCC-CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh-
Confidence 4899999999999997 6677777865 7887 899999999999999 9999999999998876422100
Q ss_pred chhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcc
Q 040887 110 VDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSC 189 (394)
Q Consensus 110 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (394)
+ .. . ..
T Consensus 79 ---~--------------------------------------------------------------------~~--~-~~ 84 (256)
T 2etb_A 79 ---V--------------------------------------------------------------------NA--Q-CT 84 (256)
T ss_dssp ---G--------------------------------------------------------------------GC--C-CC
T ss_pred ---c--------------------------------------------------------------------cc--c-cc
Confidence 0 00 0 00
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~ 268 (394)
.++..|.||||+|+..|+.+++++|++.+.. +..+..+.. ..+.+..+..|.||||+|+
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~g~tpL~~A~ 144 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF--------------------QKHQGTCFYFGELPLSLAA 144 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG--------------------SCCSSSCCCSCSSHHHHHH
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc--------------------cccccccccCCCCHHHHHH
Confidence 2334567777777777777777776665432 111111100 0112222334999999999
Q ss_pred HcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHH--cCCHH-------HHHHHHhCCCCCCcchhhc-------cc
Q 040887 269 KNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAK--NGHAD-------MVKAIIEIPGTNMTMDEVV-------NK 329 (394)
Q Consensus 269 ~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~~~~~~~~~~~~-------~~ 329 (394)
..|+.+++++|++ .+.+ ++.+|..|+||||+|+. .++.+ ++++|+++|++ + +.
T Consensus 145 ~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~-------~~~~~~~~~~ 216 (256)
T 2etb_A 145 CTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR-------LCPTVQLEEI 216 (256)
T ss_dssp HTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH-------HSTTCCGGGC
T ss_pred HcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC-------cccccccccc
Confidence 9999999999999 5544 48889999999999998 78888 99999999988 7 89
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361 (394)
Q Consensus 330 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~ 361 (394)
+|..|+||||+|+..|+.+++++|+++| +++
T Consensus 217 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~ 247 (256)
T 2etb_A 217 SNHQGLTPLKLAAKEGKIEIFRHILQRE-FSG 247 (256)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCC
Confidence 9999999999999999999999999998 543
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-36 Score=261.12 Aligned_cols=252 Identities=15% Similarity=0.017 Sum_probs=192.9
Q ss_pred ccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCccc-----------------ccCCCCC
Q 040887 16 GNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINK-----------------TNNQGDT 78 (394)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----------------~~~~g~t 78 (394)
...+.++++...+.++ +..+..|.|+++ |+.++|++|+++|. +++. ......+
T Consensus 30 ~~~dlv~~ll~~ga~i----~~~~~~g~~~~~-----g~~~~v~~Ll~~g~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 30 FTHDLTSDFLSSPLKI----MKALPSPVVNDN-----EQKMKLEAFLQRLL-FPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp CCTTCCCSTTTSSCCC----EECBCCCCCCCH-----HHHHHHHHHHHHHH-C---------------------------
T ss_pred hcCchHHHHhhCCccc----ccCCCCCCcccC-----chhHHHHHHHHhcc-CCccccchHhhhcccccccccccCCccc
Confidence 3445566666666665 668899999987 99999999999974 2222 1111223
Q ss_pred HHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcc
Q 040887 79 PLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPT 158 (394)
Q Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (394)
.+|.|+..+..+++++|++.|++++.. .+..|.||||+|+..+ +.
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~----------~d~~g~TpLh~Aa~~g------------------~~------- 144 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIP----------VDEHGNTPLHWLTSIA------------------NL------- 144 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSC----------CSTTCCCHHHHHHHTT------------------CH-------
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccc----------cCCCCCcHHHHHHHcC------------------CH-------
Confidence 458888888999999999999998531 5778999999999877 33
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHHhC--CCCCCCCCCCChHHH
Q 040887 159 LAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGN---TDVLEYILRSL--PSGISWSSGKSPLQV 233 (394)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~--~~~~~~~~~~~~l~~ 233 (394)
+++++|++.|.+++ .++..|.||||+|+..|+ .++++.|++.+ ..+..+..|.||||+
T Consensus 145 ----------------~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~ 207 (327)
T 1sw6_A 145 ----------------ELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 207 (327)
T ss_dssp ----------------HHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred ----------------HHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHH
Confidence 99999999999998 788899999999999988 56666666653 346677899999999
Q ss_pred HHh----cCCHHHHHHHHhc--------------------CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 040887 234 ATK----KRNLGVCYLLEVN--------------------GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLF 289 (394)
Q Consensus 234 a~~----~~~~~~~~~L~~~--------------------g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~ 289 (394)
|+. .++.+++++|++. |++++.++..|.||||.|+. +++|++. .++.
T Consensus 208 A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~ 278 (327)
T 1sw6_A 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNA 278 (327)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH---TTTC
T ss_pred HHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCC
Confidence 999 8999999999877 88999999999999999985 7889887 3578
Q ss_pred ccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887 290 VTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345 (394)
Q Consensus 290 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 345 (394)
+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|
T Consensus 279 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-------~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 279 QDSNGDTCLNIAARLGNISIVDALLDYGAD-------PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-------TTCCCTTSCCGGGGTCC--
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHhcC
Confidence 899999999999999999999999999999 9999999999999998764
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.2e-34 Score=229.56 Aligned_cols=188 Identities=22% Similarity=0.217 Sum_probs=174.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887 193 IEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270 (394)
Q Consensus 193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~ 270 (394)
..+.|||+.|+..|+.+.++.|+.... .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 357899999999999999999998654 466678899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCcchhhccccCCCCCcHHHHHHHcCC---
Q 040887 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIP-GTNMTMDEVVNKMDEDGNTPLHLAALHGH--- 346 (394)
Q Consensus 271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--- 346 (394)
|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|++.| ++ ++.+|..|+||||+|+..++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-------IDFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-------TTCCCTTSCCHHHHHHHSSCCSH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------cCCCCCCCCCHHHHHHHhccchh
Confidence 99999999998888777999999999999999999999999999999 66 89999999999999999998
Q ss_pred --HHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 347 --SQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 347 --~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
.+++++|+++| ++++.+|..|.|||++|++.|+.+......
T Consensus 156 ~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 156 LYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 99999999999 999999999999999999999887764443
No 47
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=9.7e-34 Score=232.76 Aligned_cols=187 Identities=25% Similarity=0.243 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHh-C-CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccc-----cccCCCCCcHHHH
Q 040887 194 EDKSPLSLAIEMGNTDVLEYILRS-L-PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSA-----LKKNKETLYPIHL 266 (394)
Q Consensus 194 ~~~~~l~~a~~~~~~~~~~~ll~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~-----~~~~~~g~~~l~~ 266 (394)
.|.||||+|+..|+.+++++|++. + ..+..+..|.||||+|+..|+.+++++|++.|.++ +.++..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999986 3 44667789999999999999999999999999987 5677899999999
Q ss_pred HHHcCCHHHHHHHHHhcCCCCccccC-------------CCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCC
Q 040887 267 ACKNGHANVMVELLKEWRCPSLFVTD-------------NGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED 333 (394)
Q Consensus 267 a~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 333 (394)
|+..|+.+++++|++.+.+. +..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~ 153 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-------IRAQDSL 153 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTT
T ss_pred HHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-------CCCCCCC
Confidence 99999999999999987665 54443 799999999999999999999999999 9999999
Q ss_pred CCcHHHHHHHcCCHHHH----HHHHhcCCCCC------CCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887 334 GNTPLHLAALHGHSQVV----YALLRYGRSNP------DLKNKQGMTAYKMALREYYMQTSIAEKQ 389 (394)
Q Consensus 334 g~t~L~~A~~~~~~~~~----~~Ll~~g~ad~------~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 389 (394)
|+||||+|+..++.+++ ++|+++| +++ +.+|..|+|||++|++.|+.+......+
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999988 9999999 887 5899999999999999999887644443
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=8.2e-34 Score=218.99 Aligned_cols=158 Identities=33% Similarity=0.410 Sum_probs=139.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887 197 SPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV 275 (394)
Q Consensus 197 ~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 275 (394)
++|+.|+..|+.++|++|++.+.+ +..+..|.|||++|+..+..+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 468899999999999999987644 6778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887 276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLR 355 (394)
Q Consensus 276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 355 (394)
+++|++.+.+. +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 86 v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 86 VKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-------VNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999987665 88899999999999999999999999999998 89999999999999999999999999999
Q ss_pred cCCCCCCC
Q 040887 356 YGRSNPDL 363 (394)
Q Consensus 356 ~g~ad~~~ 363 (394)
+| |+++.
T Consensus 158 ~G-A~ie~ 164 (169)
T 4gpm_A 158 QG-GWLEH 164 (169)
T ss_dssp C-------
T ss_pred CC-CCcCC
Confidence 99 88753
No 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.6e-35 Score=242.72 Aligned_cols=190 Identities=22% Similarity=0.277 Sum_probs=170.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-----CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHH
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLP-----SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPI 264 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l 264 (394)
..+..|.||||+|+..|+.+++++|++.+. .+..+..|.||||+|+..++.+++++|++.|++++.++..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 467789999999999999999999988653 466778899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCC-----CccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC-CCCcHH
Q 040887 265 HLACKNGHANVMVELLKEWRCP-----SLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE-DGNTPL 338 (394)
Q Consensus 265 ~~a~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-~g~t~L 338 (394)
|+|+..|+.+++++|++.+... .+..+..|.||||+|+..|+.+++++|++.|++ ++.++. .|+|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~~g~tpL 155 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-------VNAQEPCNGRTAL 155 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-------TTCCCTTTCCCHH
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCCCCCCCCCHH
Confidence 9999999999999999987542 466788899999999999999999999999999 899997 999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887 339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387 (394)
Q Consensus 339 ~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~ 387 (394)
|+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+.....
T Consensus 156 ~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L 203 (236)
T 1ikn_D 156 HLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203 (236)
T ss_dssp HHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHH
Confidence 9999999999999999999 99999999999999999999887765443
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.3e-33 Score=216.43 Aligned_cols=150 Identities=30% Similarity=0.350 Sum_probs=142.7
Q ss_pred ChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHH
Q 040887 229 SPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHAD 308 (394)
Q Consensus 229 ~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 308 (394)
++|+.|++.|+.++++.|++.|++++.++..|.||||+|+..++.+++++|++.+.+. +.++..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHH
Confidence 4789999999999999999999999999999999999999999999999999987766 889999999999999999999
Q ss_pred HHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887 309 MVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387 (394)
Q Consensus 309 ~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~ 387 (394)
++++|++.|++ +|.+|.+|+||||+|+..|+.+++++|+++| +|++.+|.+|+|||++|++.|+.+.....
T Consensus 85 ~v~~Ll~~gad-------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~L 155 (169)
T 4gpm_A 85 VVKLLISKGAD-------VNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLL 155 (169)
T ss_dssp HHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHCcCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999 9999999999999999999999999999999 99999999999999999999987765443
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=8.1e-34 Score=237.40 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=158.1
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHH----hCCCCccccc----CCCCCHHHHHH---HcCcHHHHHHHHhhccCCCCCCC
Q 040887 39 LTDGSSLLHVAAKSGHGEITAKIAQ----YYPFLINKTN----NQGDTPLHCAA---RAGKLNTATALVDFAKHIPSTSQ 107 (394)
Q Consensus 39 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~ 107 (394)
+..|+|+||.||+.|+.+.++.|++ .+. +++..+ ..|+||||+|+ ..|+.+++++|++.|+++...
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~-- 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM-- 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTC-CTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH--
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch--
Confidence 4678999999999999995555554 754 566555 77999999999 679999999999998764210
Q ss_pred CcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCC
Q 040887 108 APVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKL 187 (394)
Q Consensus 108 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 187 (394)
..++. ...
T Consensus 79 ----------------------------------------------------------------------~~~~~--~~~ 86 (260)
T 3jxi_A 79 ----------------------------------------------------------------------REFIN--SPF 86 (260)
T ss_dssp ----------------------------------------------------------------------HHHHT--CCB
T ss_pred ----------------------------------------------------------------------Hhhhc--ccc
Confidence 00000 000
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC----------
Q 040887 188 SCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN---------- 257 (394)
Q Consensus 188 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~---------- 257 (394)
...+..|.||||+|+..|+.+++++|++ .|++++.++
T Consensus 87 -~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------------------------~ga~~~~~~~~~~~~~~~~ 133 (260)
T 3jxi_A 87 -RDVYYRGQTALHIAIERRCKHYVELLVE--------------------------------KGADVHAQARGRFFQPKDE 133 (260)
T ss_dssp -CCSSEESBCHHHHHHHTTCHHHHHHHHH--------------------------------TTCCTTCCCEECCCSSSCC
T ss_pred -cccccCCCCHHHHHHHcCCHHHHHHHHh--------------------------------CCCCcCccccccccCcccc
Confidence 0233345666666666666666665555 444444444
Q ss_pred ----CCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCccccCCCchHHHHHHHcCC---------HHHHHHHHhCCCCCC
Q 040887 258 ----KETLYPIHLACKNGHANVMVELLK---EWRCPSLFVTDNGCNILHFAAKNGH---------ADMVKAIIEIPGTNM 321 (394)
Q Consensus 258 ----~~g~~~l~~a~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~ 321 (394)
..|.||||+|+..|+.+++++|++ .+.+. +.+|..|+||||+|+..++ .+++++|++.|++..
T Consensus 134 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~ 212 (260)
T 3jxi_A 134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF 212 (260)
T ss_dssp CCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence 679999999999999999999999 55444 8899999999999998887 799999999998810
Q ss_pred cchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 040887 322 TMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNP 361 (394)
Q Consensus 322 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~ 361 (394)
.....++.+|..|+||||+|+..|+.+++++|+++| +++
T Consensus 213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~ 251 (260)
T 3jxi_A 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE-IAD 251 (260)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC-CCc
Confidence 000011779999999999999999999999999998 543
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.2e-33 Score=233.16 Aligned_cols=186 Identities=22% Similarity=0.195 Sum_probs=165.1
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHHhCCC-CC----CCCCCCChHHHHHhc---CCHHHHHHHHhcCcccccc------
Q 040887 195 DKSPLSLAIEMGNTD----VLEYILRSLPS-GI----SWSSGKSPLQVATKK---RNLGVCYLLEVNGYSALKK------ 256 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~----~~~~ll~~~~~-~~----~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~~~~------ 256 (394)
|.||||.|+..|+.+ ++++|++.+.. +. .+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 789999999999997 55666666554 43 578999999999999 9999999999999887633
Q ss_pred -----CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCC-------------CchHHHHHHHcCCHHHHHHHHh---
Q 040887 257 -----NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-------------GCNILHFAAKNGHADMVKAIIE--- 315 (394)
Q Consensus 257 -----~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~~~~Ll~--- 315 (394)
+..|.||||+|+..|+.+++++|++.+.+. +..+.. |.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 367999999999999999999999997665 667665 9999999999999999999999
Q ss_pred CCCCCCcchhhccccCCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCCC-------CCcccCCCcHHHHHHhhh
Q 040887 316 IPGTNMTMDEVVNKMDEDGNTPLHLAAL--HGHSQ-------VVYALLRYGRSNP-------DLKNKQGMTAYKMALREY 379 (394)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~g~ad~-------~~~~~~g~t~l~~a~~~~ 379 (394)
.|++ ++.+|..|+||||+|+. .++.+ ++++|+++| +++ +.+|..|.||||+|++.|
T Consensus 161 ~ga~-------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g 232 (256)
T 2etb_A 161 QPAS-------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLEEISNHQGLTPLKLAAKEG 232 (256)
T ss_dssp CCCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred cCCC-------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccccccCCCCCCHHHHHHHhC
Confidence 8998 99999999999999999 78888 999999999 999 999999999999999999
Q ss_pred hcchhhhHHH
Q 040887 380 YMQTSIAEKQ 389 (394)
Q Consensus 380 ~~~~~~~~~~ 389 (394)
+.+......+
T Consensus 233 ~~~~v~~Ll~ 242 (256)
T 2etb_A 233 KIEIFRHILQ 242 (256)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 9877644443
No 53
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.5e-32 Score=231.31 Aligned_cols=190 Identities=18% Similarity=0.151 Sum_probs=164.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhC---CCC------CCCCCCCChHHHHHhc---CCHHHHHHHHhcCccc----
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSL---PSG------ISWSSGKSPLQVATKK---RNLGVCYLLEVNGYSA---- 253 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~---~~~------~~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~---- 253 (394)
..+..|.||||.|+..|+.++++.|++.+ ... ..+..|.||||+|+.. |+.+++++|++.|++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 46778999999999999999999888742 222 2367899999999986 8999999999998753
Q ss_pred ---cc----cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccC--------------CCchHHHHHHHcCCHHHHHH
Q 040887 254 ---LK----KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTD--------------NGCNILHFAAKNGHADMVKA 312 (394)
Q Consensus 254 ---~~----~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~~~~ 312 (394)
+. .+..|.||||+|+..|+.+++++|++.+.+. +..+. .|.||||+|+..|+.+++++
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 22 5668999999999999999999999997666 66665 79999999999999999999
Q ss_pred HHh---CCCCCCcchhhccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCCC-------CcccCCCcHHH
Q 040887 313 IIE---IPGTNMTMDEVVNKMDEDGNTPLHLAALHGH---------SQVVYALLRYGRSNPD-------LKNKQGMTAYK 373 (394)
Q Consensus 313 Ll~---~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~ad~~-------~~~~~g~t~l~ 373 (394)
|++ .|++ ++.+|..|+||||+|+..|+ .+++++|+++| ++++ .+|..|.||||
T Consensus 167 Ll~~~~~gad-------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~~~~~d~~g~TpL~ 238 (273)
T 2pnn_A 167 LLQNSWQPAD-------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKLEEITNRKGLTPLA 238 (273)
T ss_dssp HHHCSSCCCC-------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHH
T ss_pred HHhcccCCCC-------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhcccccccccccCCCCCCHHH
Confidence 999 8998 99999999999999999998 89999999999 9996 59999999999
Q ss_pred HHHhhhhcchhhhHH
Q 040887 374 MALREYYMQTSIAEK 388 (394)
Q Consensus 374 ~a~~~~~~~~~~~~~ 388 (394)
+|++.|+.+......
T Consensus 239 ~A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 239 LAASSGKIGVLAYIL 253 (273)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhChHHHHHHHH
Confidence 999999987764443
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.98 E-value=2.2e-34 Score=249.87 Aligned_cols=268 Identities=15% Similarity=0.101 Sum_probs=183.5
Q ss_pred hhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCC--cccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCc
Q 040887 32 HHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFL--INKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAP 109 (394)
Q Consensus 32 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~ 109 (394)
-+.+...+.++.||||+||+.|+.++|++|++.++.. .+..+..|.||||+|+..|+.++|++|+++|+++.
T Consensus 82 ~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~------ 155 (376)
T 2aja_A 82 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI------ 155 (376)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH------
T ss_pred HHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc------
Confidence 3445667778889999999999999999999987521 22345567889999999999999999999987531
Q ss_pred chhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCcc
Q 040887 110 VDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSC 189 (394)
Q Consensus 110 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (394)
.....+.. .||||.|+..+ +. +++++|++.|+++..
T Consensus 156 --~~~i~~~~-~TpLh~Aa~~G------------------~~-----------------------eiv~~Ll~~ga~~~~ 191 (376)
T 2aja_A 156 --MAMIQAEN-YHAFRLAAENG------------------HL-----------------------HVLNRLCELAPTEAT 191 (376)
T ss_dssp --HHHHSHHH-HHHHHHHHHTT------------------CH-----------------------HHHHHHHHSCGGGHH
T ss_pred --ccccCCCC-CCHHHHHHHCC------------------CH-----------------------HHHHHHHHcCCccch
Confidence 01222223 88999998776 33 899999999888652
Q ss_pred -ccCCCCCcHHHHHH-HcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHH
Q 040887 190 -CKNIEDKSPLSLAI-EMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLA 267 (394)
Q Consensus 190 -~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a 267 (394)
..+..|.||||+|+ ..|+.+++++|++.+. .+.|||+.|+..|+.+++++|++.|++++..+ ++++.|
T Consensus 192 ~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A 261 (376)
T 2aja_A 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLS 261 (376)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTT
T ss_pred hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHH
Confidence 25666889999999 9999999999987542 37899999999999999999999988876554 367778
Q ss_pred HHcCCHHHH------------HHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887 268 CKNGHANVM------------VELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335 (394)
Q Consensus 268 ~~~~~~~~v------------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~ 335 (394)
+..|+.+++ +.|+..+ ..+..+.+++|++.+....... .......++
T Consensus 262 ~~~g~~~vv~~~~~~~~~~~~~~li~~~-------------------~~~~~~~~~~Ll~~~~vk~l~~--~g~~~n~~~ 320 (376)
T 2aja_A 262 NPDGVFDLVTKSECLQGFYMLRNLIRRN-------------------DEVLLDDIRFLLSIPGIKALAP--TATIPGDAN 320 (376)
T ss_dssp SSSSCCCCSSHHHHHHHHHHHHHHHHHC-------------------CGGGHHHHHHHHTSTTTGGGSS--CCSSTTCCC
T ss_pred HHCCChhhhcHHhhhhhHHHHHHHHHcc-------------------hhhHHHHHHHHHhChhhhhhhc--cCCCCCCcc
Confidence 888877643 3333331 1134677888887654210000 112234677
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
||||+|+..|+.+++++|++.| .+++..|.|++.+|..+|..+..
T Consensus 321 ~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~ 365 (376)
T 2aja_A 321 ELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLR 365 (376)
T ss_dssp HHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------
T ss_pred HHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHH
Confidence 9999999999999999999876 57888999999999999987765
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=1.3e-31 Score=209.34 Aligned_cols=168 Identities=20% Similarity=0.143 Sum_probs=148.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH 272 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~ 272 (394)
+.+|||.|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 46899999999999999999987654 5567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352 (394)
Q Consensus 273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 352 (394)
.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-------LTTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHhCcHHHHHH
Confidence 99999999987665 88899999999999999999999999999999 89999999999999999999999999
Q ss_pred HHhcCCCCCCCcccCCCcH
Q 040887 353 LLRYGRSNPDLKNKQGMTA 371 (394)
Q Consensus 353 Ll~~g~ad~~~~~~~g~t~ 371 (394)
|+++| +++..++..|.||
T Consensus 154 L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp HHHHH-HHHSCC-------
T ss_pred HHHHH-HHHhcccCCCCCC
Confidence 99999 8999999988887
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=7.3e-32 Score=226.69 Aligned_cols=189 Identities=23% Similarity=0.275 Sum_probs=153.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCc-cccccCCCCCcHHHHHH---
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSLP---SGISWSSGKSPLQVATKKRNLGVCYLLEVNGY-SALKKNKETLYPIHLAC--- 268 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~-~~~~~~~~g~~~l~~a~--- 268 (394)
.+++|.|+..++.+.++.+++... .+..+..|.||||+|+..|+.+++++|++.|. +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 456677888888888777765422 35666788888888888888888888888887 88888888888988888
Q ss_pred --HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCC
Q 040887 269 --KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGH 346 (394)
Q Consensus 269 --~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 346 (394)
..++.+++++|++.+... +..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-------~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-------VNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTC
T ss_pred hhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-------CCCCCCCCCCHHHHHHHCCC
Confidence 567788888888887554 66777888999999988888999999988888 88888888999999998888
Q ss_pred HHHHHHHHh-cCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHHhhhc
Q 040887 347 SQVVYALLR-YGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQEKSM 393 (394)
Q Consensus 347 ~~~~~~Ll~-~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~ 393 (394)
.+++++|++ .| ++++.+|..|.|||++|++.|+.+......++.-+
T Consensus 229 ~~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 229 KEIAGLLLAVPS-CDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 999999888 66 88888888899999999888887776655554433
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=6e-31 Score=209.34 Aligned_cols=160 Identities=19% Similarity=0.222 Sum_probs=93.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~ 268 (394)
.++..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3455566666666666666666666654322 334445556666666666666666666656555555555566666666
Q ss_pred HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHH
Q 040887 269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348 (394)
Q Consensus 269 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 348 (394)
..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+
T Consensus 110 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 110 IFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-------ISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------CCCcCCCCCCHHHHHHHhCcHH
Confidence 666666666555554433 55555556666666666666666666665555 5555555666666666666666
Q ss_pred HHHHHHhcC
Q 040887 349 VVYALLRYG 357 (394)
Q Consensus 349 ~~~~Ll~~g 357 (394)
++++|+++|
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 666655544
No 58
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.5e-31 Score=222.23 Aligned_cols=188 Identities=18% Similarity=0.084 Sum_probs=161.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----hCCC-CCC----CCCCCChHHHHH---hcCCHHHHHHHHhcCcc--------
Q 040887 193 IEDKSPLSLAIEMGNTDVLEYILR----SLPS-GIS----WSSGKSPLQVAT---KKRNLGVCYLLEVNGYS-------- 252 (394)
Q Consensus 193 ~~~~~~l~~a~~~~~~~~~~~ll~----~~~~-~~~----~~~~~~~l~~a~---~~~~~~~~~~L~~~g~~-------- 252 (394)
..+.++|+.|+..|+.+.++.|++ .+.. +.. +..|.||||+|+ ..|+.+++++|++.|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 457899999999999996555554 5443 222 266999999999 67999999999998854
Q ss_pred ---ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc--------------CCCchHHHHHHHcCCHHHHHHHHh
Q 040887 253 ---ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT--------------DNGCNILHFAAKNGHADMVKAIIE 315 (394)
Q Consensus 253 ---~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~Ll~ 315 (394)
.+..+..|.||||+|+..|+.+++++|++.+.+. +..+ ..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 3445558999999999999999999999987666 6666 589999999999999999999999
Q ss_pred ---CCCCCCcchhhccccCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC-------CCcccCCCcHHHHHH
Q 040887 316 ---IPGTNMTMDEVVNKMDEDGNTPLHLAALHGH---------SQVVYALLRYGRSNP-------DLKNKQGMTAYKMAL 376 (394)
Q Consensus 316 ---~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~ad~-------~~~~~~g~t~l~~a~ 376 (394)
.|++ ++.+|..|+||||+|+..++ .+++++|+++| +++ +.+|..|.||||+|+
T Consensus 162 ~~~~ga~-------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 162 NGHKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp CSSCCCC-------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred ccccCCC-------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHH
Confidence 8988 99999999999999999888 79999999999 998 789999999999999
Q ss_pred hhhhcchhhhHHH
Q 040887 377 REYYMQTSIAEKQ 389 (394)
Q Consensus 377 ~~~~~~~~~~~~~ 389 (394)
+.|+.+......+
T Consensus 234 ~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 234 KTGKIGIFQHIIR 246 (260)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 9999887654443
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=5e-31 Score=221.59 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=148.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHH-----hcCCHHHHHHHHhcCccccccCCCCCc
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVAT-----KKRNLGVCYLLEVNGYSALKKNKETLY 262 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~-----~~~~~~~~~~L~~~g~~~~~~~~~g~~ 262 (394)
..|..|.||||+|+..|+.+++++|++.+. .+..+..|.||||+|+ ..+..+++++|++.|.+.+..+..|.|
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 185 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCC
Confidence 467789999999999999999999999874 4667788999999999 567779999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHh-CCCCCCcchhhccccCCCCCcHHHHH
Q 040887 263 PIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTPLHLA 341 (394)
Q Consensus 263 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~L~~A 341 (394)
|||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|
T Consensus 186 pLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-------~~~~d~~g~TpL~~A 257 (276)
T 4hbd_A 186 ALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-------ISLTDRDGSTALMVA 257 (276)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-------TTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-------CcCcCCCCCCHHHHH
Confidence 999999999999999999997766 8899999999999999999999999999 8988 999999999999999
Q ss_pred HHcCCHHHHHHHHhcC
Q 040887 342 ALHGHSQVVYALLRYG 357 (394)
Q Consensus 342 ~~~~~~~~~~~Ll~~g 357 (394)
+..|+.+++++|++++
T Consensus 258 ~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 258 LDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTCHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHhcc
Confidence 9999999999999987
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.2e-30 Score=207.57 Aligned_cols=161 Identities=22% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHH
Q 040887 221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHF 300 (394)
Q Consensus 221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 300 (394)
+..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMW 107 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999997665 8889999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887 301 AAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380 (394)
Q Consensus 301 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~ 380 (394)
|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGAN-------VNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGR 179 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCC-------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCc
Confidence 9999999999999999999 9999999999999999999999999999999 9999999999999999999998
Q ss_pred cchhhhHHHh
Q 040887 381 MQTSIAEKQE 390 (394)
Q Consensus 381 ~~~~~~~~~~ 390 (394)
.+......+.
T Consensus 180 ~~~v~~Ll~~ 189 (192)
T 2rfm_A 180 QEVIKIFTEV 189 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8776554443
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.5e-30 Score=200.96 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=82.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA 273 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~ 273 (394)
|.||||.|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 44555555555555555555554322 33344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887 274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 353 (394)
+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 83 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (167)
T 3v31_A 83 DIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-------PTIETDSGYNSMDLAVALGYRSVQQVI 154 (167)
T ss_dssp HHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 5555555544333 44455555555555555555555555555555 455555555555555555555555555
Q ss_pred HhcC
Q 040887 354 LRYG 357 (394)
Q Consensus 354 l~~g 357 (394)
++++
T Consensus 155 ~~~~ 158 (167)
T 3v31_A 155 ESHL 158 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.4e-30 Score=200.03 Aligned_cols=157 Identities=25% Similarity=0.297 Sum_probs=132.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCH
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHA 273 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~ 273 (394)
..+||+.|+..|+.+++++|++.+.. +..+..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 45888999999999999988876543 5566778899998888 888888888888888888888889999999999999
Q ss_pred HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887 274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 353 (394)
+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++.|++. ++.+|..|+||||+|+..|+.+++++|
T Consensus 84 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 84 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999888876554 778888899999999999999999999888874 578888888999999999999999999
Q ss_pred HhcCCCC
Q 040887 354 LRYGRSN 360 (394)
Q Consensus 354 l~~g~ad 360 (394)
+++| ||
T Consensus 157 l~~G-Ad 162 (162)
T 1ihb_A 157 QANG-AG 162 (162)
T ss_dssp HHTC---
T ss_pred HHhC-CC
Confidence 9888 64
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=8e-30 Score=198.29 Aligned_cols=158 Identities=23% Similarity=0.276 Sum_probs=144.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887 192 NIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKN 270 (394)
Q Consensus 192 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~ 270 (394)
...+.++++.|+..|+.+++++|++.+.. +..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 34567899999999999999999997644 66678899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHH
Q 040887 271 GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVV 350 (394)
Q Consensus 271 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 350 (394)
|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..|+.+++
T Consensus 91 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 91 GHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-------VNAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHhCCHHHH
Confidence 9999999999987665 78899999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHhcC
Q 040887 351 YALLRYG 357 (394)
Q Consensus 351 ~~Ll~~g 357 (394)
++|+++|
T Consensus 163 ~~L~~~G 169 (169)
T 2y1l_E 163 EILQKLN 169 (169)
T ss_dssp HHHHTC-
T ss_pred HHHHHcC
Confidence 9999876
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1e-29 Score=197.42 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=143.0
Q ss_pred CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
.|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence 4789999999999999999999999999999999999999999999999999999996665 888999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI 385 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~ 385 (394)
+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|.. ++.+|..|.||+++|++.|+.+...
T Consensus 81 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 81 YTDIVKMLLDCGVD-------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp CHHHHHHHHHHTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHCCCC-------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999 999999999999999999999999999999877 6889999999999999999877753
Q ss_pred h
Q 040887 386 A 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 153 ~ 153 (167)
T 3v31_A 153 V 153 (167)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=5.7e-30 Score=199.12 Aligned_cols=154 Identities=29% Similarity=0.377 Sum_probs=144.5
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 304 (394)
..+.++|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF 90 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence 55678999999999999999999999999999999999999999999999999999987665 88899999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.|+.+..
T Consensus 91 ~~~~~~~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 91 GHLEIVEVLLKNGAD-------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 999999999999999 9999999999999999999999999999999 99999999999999999999987665
Q ss_pred hhH
Q 040887 385 IAE 387 (394)
Q Consensus 385 ~~~ 387 (394)
...
T Consensus 163 ~~L 165 (169)
T 2y1l_E 163 EIL 165 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=8.6e-30 Score=194.73 Aligned_cols=150 Identities=22% Similarity=0.250 Sum_probs=140.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHH
Q 040887 196 KSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANV 275 (394)
Q Consensus 196 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~ 275 (394)
.++|+.|+..|+.+++++|++.+.....+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 82 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence 47999999999999999999988776678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040887 276 MVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 276 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 353 (394)
+++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 83 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 83 VEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-------VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999987665 88899999999999999999999999999998 899999999999999999999999987
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.1e-29 Score=194.24 Aligned_cols=147 Identities=27% Similarity=0.298 Sum_probs=139.1
Q ss_pred CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCH
Q 040887 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHA 307 (394)
Q Consensus 228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 307 (394)
.++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChH
Confidence 579999999999999999999999876 5888999999999999999999999987665 88899999999999999999
Q ss_pred HHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 308 DMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 308 ~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|+..|+.+..
T Consensus 81 ~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~ 149 (153)
T 1awc_B 81 NIVEVLLKHGAD-------VNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149 (153)
T ss_dssp HHHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999 9999999999999999999999999999999 99999999999999999999987654
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.3e-29 Score=196.51 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=141.6
Q ss_pred CCChHHHHHhcCCHHHHHHHHhcCcc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVNGYS-ALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~g~~-~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
+.+|||.|+..|+.++++.|+..+.+ ++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 46899999999999999999999877 7889999999999999999999999999987665 888999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI 385 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~ 385 (394)
+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..|+.+...
T Consensus 81 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (172)
T 3v30_A 81 YTDIVGLLLERDVD-------INIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQ 152 (172)
T ss_dssp CHHHHHHHHTTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHH
Confidence 99999999999999 9999999999999999999999999999999 999999999999999999999877654
Q ss_pred hH
Q 040887 386 AE 387 (394)
Q Consensus 386 ~~ 387 (394)
..
T Consensus 153 ~L 154 (172)
T 3v30_A 153 VI 154 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1e-29 Score=199.68 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=149.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcC
Q 040887 194 EDKSPLSLAIEMGNTDVLEYILRSLP--SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNG 271 (394)
Q Consensus 194 ~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~ 271 (394)
.+.++|+.|+..|+.+++++|++... .+..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 46789999999999999999998743 3667788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHH
Q 040887 272 HANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVY 351 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 351 (394)
+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++ ++.+|..|.|||++|+..++.++++
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-------VSICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------SSBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-------cchhccCCCCcHHHHHHHHHHHHHH
Confidence 999999999987665 88899999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccCC
Q 040887 352 ALLRYGRSNPDLKNKQG 368 (394)
Q Consensus 352 ~Ll~~g~ad~~~~~~~g 368 (394)
+|+++| ++++..+..+
T Consensus 156 ~L~~~g-~~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEKMG-QNLNRIPYKD 171 (179)
T ss_dssp HHHHTT-CCCSCBCCCC
T ss_pred HHHHhh-cCcccCCccc
Confidence 999999 9998776654
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=4.1e-29 Score=191.75 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=141.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSL--PSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH 272 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~ 272 (394)
+.+||+.|+..|+.+++++|++.. ..+..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 458999999999999999999985 557778889999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352 (394)
Q Consensus 273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 352 (394)
.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..|+.+++++
T Consensus 81 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-------~~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 81 LDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-------LHRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-------TTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-------CCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 99999999987665 88899999999999999999999999999 77 89999999999999999999999999
Q ss_pred HHhc
Q 040887 353 LLRY 356 (394)
Q Consensus 353 Ll~~ 356 (394)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9975
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.9e-29 Score=195.01 Aligned_cols=153 Identities=25% Similarity=0.267 Sum_probs=142.5
Q ss_pred CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
...+||+.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|++.+.+. +.++..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 45789999999999999999999999999999999999999999 9999999999987665 888999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CCCcccCCCcHHHHHHhhhhcchh
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN-PDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad-~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++ ++.++..|.|||++|++.|+.+..
T Consensus 82 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 82 FLDTLQTLLEFQAD-------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT-ASNVGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp CHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc-CCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 99999999999998 9999999999999999999999999999999 66 699999999999999999987765
Q ss_pred hhHH
Q 040887 385 IAEK 388 (394)
Q Consensus 385 ~~~~ 388 (394)
....
T Consensus 154 ~~Ll 157 (162)
T 1ihb_A 154 SLMQ 157 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.5e-29 Score=196.15 Aligned_cols=158 Identities=25% Similarity=0.264 Sum_probs=112.9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC--CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHH
Q 040887 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPS--GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLAC 268 (394)
Q Consensus 191 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~ 268 (394)
.+..+.+||+.|+..|+.+++++|++.... ...+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 344567788888888888888888764333 333455667777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHH
Q 040887 269 KNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQ 348 (394)
Q Consensus 269 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 348 (394)
..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+
T Consensus 84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~a~~-~~~~ 154 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-------PTKKNRDGNTPLDLVKD-GDTD 154 (165)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCTGGGSCT-TCHH
T ss_pred HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CcccCCCCCChhHhHhc-CChH
Confidence 777777777777765554 66677777777777777777777777777777 67777777777777665 6777
Q ss_pred HHHHHHhcC
Q 040887 349 VVYALLRYG 357 (394)
Q Consensus 349 ~~~~Ll~~g 357 (394)
++++|++.|
T Consensus 155 i~~~L~~~g 163 (165)
T 3twr_A 155 IQDLLRGDA 163 (165)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 777777766
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1e-30 Score=215.19 Aligned_cols=180 Identities=13% Similarity=0.023 Sum_probs=135.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCC
Q 040887 193 IEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGH 272 (394)
Q Consensus 193 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~ 272 (394)
..|.|||+.|+..++.+.++.|++.+........+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 35899999999999999999999988776666788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC-cHHHHH--HHcCCHHH
Q 040887 273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLA--ALHGHSQV 349 (394)
Q Consensus 273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~-t~L~~A--~~~~~~~~ 349 (394)
.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|+++|++ ++.++..|. ||||+| +..|+.++
T Consensus 83 ~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~~~~t~l~~a~~~~~g~~~~ 154 (239)
T 1ycs_B 83 TEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-------VFAMTYSDMQTAADKCEEMEEGYTQC 154 (239)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred HHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------cceecCCCCcchHHHHHHhhhccHHH
Confidence 99999999987665 88999999999999999999999999999999 899998877 999999 78899999
Q ss_pred HHHHHhcCCCCCCCc---------ccCCCcHHHHHHhhhhc
Q 040887 350 VYALLRYGRSNPDLK---------NKQGMTAYKMALREYYM 381 (394)
Q Consensus 350 ~~~Ll~~g~ad~~~~---------~~~g~t~l~~a~~~~~~ 381 (394)
+++|+++| ++++.. +..+.++++++.+.|..
T Consensus 155 ~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 155 SQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp HHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred HHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCCE
Confidence 99999999 888876 55688899888887753
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=7.6e-29 Score=194.75 Aligned_cols=154 Identities=23% Similarity=0.293 Sum_probs=140.6
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHH
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAK 303 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 303 (394)
..+.++|+.|+..|+.++++.|++. +.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 4578999999999999999998887 6789999999999999999999999999999997665 8889999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887 304 NGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383 (394)
Q Consensus 304 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~ 383 (394)
.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|++.+..+.
T Consensus 82 ~~~~~~v~~Ll~~g~~-------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~ 153 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD-------INAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELL 153 (179)
T ss_dssp TTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999999 9999999999999999999887665
Q ss_pred hhhH
Q 040887 384 SIAE 387 (394)
Q Consensus 384 ~~~~ 387 (394)
....
T Consensus 154 ~~~L 157 (179)
T 3f6q_A 154 RERA 157 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.4e-32 Score=221.04 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=164.3
Q ss_pred HHHHhcCCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCChHHHHHhcCCHHHHHHHHhcCcccc
Q 040887 178 YFLVSLDPKLSC--CKNIEDKSPLSLAIEMGNTDVLEYILRSLP-SGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSAL 254 (394)
Q Consensus 178 ~~l~~~~~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~ 254 (394)
+.|++.+.++.. ..+.++.||||.|+..|+.+++++|++.+. .+..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n 81 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 456777766552 345567789999999999999999999764 46677899999999999999999999999999999
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-CCCchHHHHH--HHcCCHHHHHHHHhCCCCCCcchhhccccC
Q 040887 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-DNGCNILHFA--AKNGHADMVKAIIEIPGTNMTMDEVVNKMD 331 (394)
Q Consensus 255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 331 (394)
.++..|.||||+|+..|+.+++++|++.+.+. +..+ ..|.||||+| +..|+.+++++|++.|++ ++.+|
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-------~~~~~ 153 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-------MGLMN 153 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-------TTTSG
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-------ccccc
Confidence 99999999999999999999999999998777 5554 6999999999 999999999999999998 89999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCC--CCCcccCCCcHHHHHHhhhhcchh
Q 040887 332 EDGNTPLHLAALHGHSQVVYALLRYGRSN--PDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 332 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad--~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
..|.||++.++.... .++|++.| ++ ++.+|..|+||||+|+..|+.+..
T Consensus 154 ~~~~~~l~~~~~~~~---~~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 154 SGAVYALWDYSAEFG---DELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp GGEEEESSCBCCSST---TBCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred CCchHHHHHHhhccc---cccCcccc-ccccccccCCCcccHHHHHHHcCCccee
Confidence 999999996655443 36788888 88 678899999999999999987654
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=4.7e-29 Score=193.31 Aligned_cols=152 Identities=23% Similarity=0.228 Sum_probs=138.6
Q ss_pred CCCCCCChHHHHHhcCCHHHHHHHHh-cCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887 223 SWSSGKSPLQVATKKRNLGVCYLLEV-NGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301 (394)
Q Consensus 223 ~~~~~~~~l~~a~~~~~~~~~~~L~~-~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 301 (394)
.+..+.+||+.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 34667899999999999999999987 56677888889999999999999999999999987665 88999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhc
Q 040887 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYM 381 (394)
Q Consensus 302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~ 381 (394)
+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|.+ +..
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-------VNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCH
T ss_pred HHcCcHHHHHHHHhCCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CCh
Confidence 999999999999999999 9999999999999999999999999999999 9999999999999999887 554
Q ss_pred chh
Q 040887 382 QTS 384 (394)
Q Consensus 382 ~~~ 384 (394)
+..
T Consensus 154 ~i~ 156 (165)
T 3twr_A 154 DIQ 156 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.1e-28 Score=187.85 Aligned_cols=149 Identities=24% Similarity=0.265 Sum_probs=138.6
Q ss_pred CCChHHHHHhcCCHHHHHHHHhc-CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVN-GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~-g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
+.+||+.|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|++.+.+. +..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 46899999999999999999888 45899999999999999 9999999999999987665 889999999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhh
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSI 385 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~ 385 (394)
+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++. ++++.+|..|.|||++|+..|+.+...
T Consensus 80 ~~~~v~~Ll~~g~~-------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp CHHHHHHHHHTTCC-------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHcCCC-------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999 999999999999999999999999999998 899999999999999999999876654
Q ss_pred h
Q 040887 386 A 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 151 ~ 151 (156)
T 1bd8_A 151 I 151 (156)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5e-31 Score=228.89 Aligned_cols=236 Identities=16% Similarity=0.051 Sum_probs=168.6
Q ss_pred CchHHHHHHh-cCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcC
Q 040887 42 GSSLLHVAAK-SGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMG 120 (394)
Q Consensus 42 g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 120 (394)
+.+++++|+. .++.++++++++.+. +++||||+|+..|+.+++++|++.|+..... .
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~--------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~--------~------ 122 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGI--------KSEVICFVAAITGCSSALDTLCLLLTSDEIV--------K------ 122 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTC--------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC--------C------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCC--------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH--------H------
Confidence 4578888877 578899999998854 2459999999999999999999987621100 0
Q ss_pred CcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhhhhhHHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040887 121 NTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNIINSLVAIAYFLVSLDPKLSCCKNIEDKSPLS 200 (394)
Q Consensus 121 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 200 (394)
..+..|.||||
T Consensus 123 ---------------------------------------------------------------------~~~~~~~tpL~ 133 (376)
T 2aja_A 123 ---------------------------------------------------------------------VIQAENYQAFR 133 (376)
T ss_dssp -----------------------------------------------------------------------CHHHHHHHH
T ss_pred ---------------------------------------------------------------------HhccCCCCHHH
Confidence 01112456888
Q ss_pred HHHHcCCHHHHHHHHHhCCC----CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccc--cCCCCCcHHHHHH-HcCCH
Q 040887 201 LAIEMGNTDVLEYILRSLPS----GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALK--KNKETLYPIHLAC-KNGHA 273 (394)
Q Consensus 201 ~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~--~~~~g~~~l~~a~-~~~~~ 273 (394)
+|+..|+.+++++|++.++. +..... .||||+|+..|+.+++++|++.|++++. .+..|.||||+|+ ..|+.
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ 212 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 212 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence 88888888888888887642 222222 7899999999999999999999988776 7788899999999 99999
Q ss_pred HHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHc---------
Q 040887 274 NVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH--------- 344 (394)
Q Consensus 274 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--------- 344 (394)
+++++|++.+. .|.||||+|+.+|+.+++++|+++|++ ++.++. +++.|+..
T Consensus 213 eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-------~~~~~~----~l~~A~~~g~~~vv~~~ 273 (376)
T 2aja_A 213 NVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-------LKEMHD----AFKLSNPDGVFDLVTKS 273 (376)
T ss_dssp HHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-------HHHHHT----TTTTTSSSSCCCCSSHH
T ss_pred HHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-------cccccH----HHHHHHHCCChhhhcHH
Confidence 99999988542 378999999999999999999988876 433321 22222222
Q ss_pred ------------------CCHHHHHHHHhcCCC----CCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 345 ------------------GHSQVVYALLRYGRS----NPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 345 ------------------~~~~~~~~Ll~~g~a----d~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
+..+.+++|++.+.. +.......+.||+++|++.|+.+......
T Consensus 274 ~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl 339 (376)
T 2aja_A 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339 (376)
T ss_dssp HHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT
T ss_pred hhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH
Confidence 234566777764311 11223345678999999999988765443
No 79
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=1.9e-28 Score=187.73 Aligned_cols=143 Identities=21% Similarity=0.149 Sum_probs=117.4
Q ss_pred CCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCch-HHHHH
Q 040887 223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCN-ILHFA 301 (394)
Q Consensus 223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A 301 (394)
....+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+ .|+.+++++|++.+.+. +.++..|.| |||+|
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA 85 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 4467889999999999999999999999999999999999999985 99999999999987665 889999999 99999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHH
Q 040887 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMA 375 (394)
Q Consensus 302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a 375 (394)
+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.++..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGAR-------LDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCC-------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHCCCHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 999999999999999999 9999999999999999999999999999999 99999999999998744
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3e-27 Score=176.62 Aligned_cols=130 Identities=21% Similarity=0.178 Sum_probs=112.7
Q ss_pred CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCC-CchHHH
Q 040887 221 GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDN-GCNILH 299 (394)
Q Consensus 221 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~ 299 (394)
+..+..+.||||.|+..++.+++++|++.|++++.++..|.||||+|+. |+.+++++|++.+.+. +.++.. |.||||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH 83 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence 4456778888888888888888888888888888888899999999999 9999999999887665 778888 899999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887 300 FAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360 (394)
Q Consensus 300 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad 360 (394)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G-ad 136 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHRAGAR-------LDVCDAWGRLPVDLAEEQGHRDIARYLHAAT-GD 136 (136)
T ss_dssp HHHHHTCHHHHHHHHHTCCC-------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH-CC
T ss_pred HHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence 99999999999999999988 8888999999999999999999999999988 64
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=2.6e-28 Score=191.50 Aligned_cols=162 Identities=12% Similarity=-0.003 Sum_probs=117.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCH----HHHHHHHhcCccccccCCCCCcHHHHHHHc
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNL----GVCYLLEVNGYSALKKNKETLYPIHLACKN 270 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~ 270 (394)
++++|+.|+..|+.+.++.++..+.....+..|.||||+|+..++. +++++|++.|++++.++..|+||||+|+..
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~ 85 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG 85 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 4567888888888888888877654433335678888888887764 478888888888888888888888888887
Q ss_pred CC------HHHHHHHHHhcCCCCccccCCCc-hHHHHHHHcC-----CHHHHHHHHh-CCCCCCcchhhccccCCCCCcH
Q 040887 271 GH------ANVMVELLKEWRCPSLFVTDNGC-NILHFAAKNG-----HADMVKAIIE-IPGTNMTMDEVVNKMDEDGNTP 337 (394)
Q Consensus 271 ~~------~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~g~t~ 337 (394)
++ .+++++|++.+.+. +.+|..|. ||||+|+..+ ..+++++|++ .|++ ++.+|..|+||
T Consensus 86 ~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-------~~~~d~~G~Tp 157 (186)
T 3t8k_A 86 GGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-------LLIKDKWGLTA 157 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-------TTCCCTTSCCH
T ss_pred CCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-------CcccCCCCCCH
Confidence 76 45677777776555 77777777 7777777733 3457777777 7777 77777777777
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCcc
Q 040887 338 LHLAALHGHSQVVYALLRYGRSNPDLKN 365 (394)
Q Consensus 338 L~~A~~~~~~~~~~~Ll~~g~ad~~~~~ 365 (394)
||+|+..|+.+++++|+++. .+.++++
T Consensus 158 L~~A~~~~~~~~v~~L~~~~-~~~~~~~ 184 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYI-KKYNLKE 184 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-HHHTCCC
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHhccc
Confidence 77777777777777777765 4444443
No 82
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.3e-27 Score=196.67 Aligned_cols=152 Identities=25% Similarity=0.245 Sum_probs=109.9
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 304 (394)
..|.||||.|+..+..+.++.|++.|++++.. ..|.||||.|+..|+.+++++|++.+.+. +.+|..|.||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence 46899999999999999999999999999864 78899999999999999999999988754 88999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCC-cHHHHH--Hhhhhc
Q 040887 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM-TAYKMA--LREYYM 381 (394)
Q Consensus 305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~-t~l~~a--~~~~~~ 381 (394)
|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.++..|. ||+++| +..|+.
T Consensus 81 g~~~~v~~Ll~~ga~-------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~ 152 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVN-------VNAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYT 152 (239)
T ss_dssp TCHHHHHHHHHHTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred CCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccH
Confidence 999999999999999 9999999999999999999999999999999 99999998888 999999 677776
Q ss_pred chhhh
Q 040887 382 QTSIA 386 (394)
Q Consensus 382 ~~~~~ 386 (394)
+....
T Consensus 153 ~~~~~ 157 (239)
T 1ycs_B 153 QCSQF 157 (239)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 65433
No 83
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=194.26 Aligned_cols=159 Identities=17% Similarity=0.079 Sum_probs=138.2
Q ss_pred HHHHHhCCC----CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCC
Q 040887 212 EYILRSLPS----GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPS 287 (394)
Q Consensus 212 ~~ll~~~~~----~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~ 287 (394)
+.|++.+.. +.....+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+.
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~- 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV- 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-
Confidence 445554333 334456778899999999999999999999999999999999999999999999999999987665
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCCc
Q 040887 288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGNTPLHLA--ALHGHSQVVYALLRYGRSNPDLK 364 (394)
Q Consensus 288 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g~ad~~~~ 364 (394)
+..|..|+||||+|+..|+.+++++|++.|++ ++.++ ..|+||||+| +..|+.+++++|++.| ++++.+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~ 152 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-------IFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLM 152 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTS
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccc
Confidence 88999999999999999999999999999999 88886 6999999999 9999999999999999 999999
Q ss_pred ccCCCcHHHHHHhhh
Q 040887 365 NKQGMTAYKMALREY 379 (394)
Q Consensus 365 ~~~g~t~l~~a~~~~ 379 (394)
|..|.||++.+...+
T Consensus 153 ~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 153 NSGAVYALWDYSAEF 167 (229)
T ss_dssp GGGEEEESSCBCCSS
T ss_pred cCCchHHHHHHhhcc
Confidence 999999998655443
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=7e-26 Score=167.10 Aligned_cols=126 Identities=40% Similarity=0.573 Sum_probs=116.3
Q ss_pred CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
+|.||||.|+..++.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.+... +.++..|.||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 4788999999999999999999999999999999999999999999999999999987665 788899999999999999
Q ss_pred CHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 040887 306 HADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSN 360 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad 360 (394)
+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++| +|
T Consensus 80 ~~~~~~~Ll~~g~~-------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G-ad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AY 126 (126)
T ss_dssp CHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CC
T ss_pred hHHHHHHHHHcCCC-------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CC
Confidence 99999999999998 8999999999999999999999999999998 65
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=3.3e-27 Score=185.19 Aligned_cols=148 Identities=13% Similarity=0.037 Sum_probs=130.7
Q ss_pred CCChHHHHHhcCCHHHHHHHHhcCccccccC-CCCCcHHHHHHHcCCH----HHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVNGYSALKKN-KETLYPIHLACKNGHA----NVMVELLKEWRCPSLFVTDNGCNILHFA 301 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 301 (394)
+.++|+.|++.|+.+.++.+...+.+ .++ ..|+||||+|+..++. +++++|++.+.+. +.++..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 46899999999999888888887753 344 6799999999999975 5899999987766 88999999999999
Q ss_pred HHcCC------HHHHHHHHhCCCCCCcchhhccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCcccCC
Q 040887 302 AKNGH------ADMVKAIIEIPGTNMTMDEVVNKMDEDGN-TPLHLAALHG-----HSQVVYALLR-YGRSNPDLKNKQG 368 (394)
Q Consensus 302 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~g~ad~~~~~~~g 368 (394)
+..++ .+++++|+++|++ +|.+|..|+ ||||+|+..+ +.+++++|++ +| +|++.+|..|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad-------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G 154 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD-------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWG 154 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC-------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTS
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC-------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCC
Confidence 99987 6889999999999 999999999 9999999954 4579999999 88 9999999999
Q ss_pred CcHHHHHHhhhhcchhh
Q 040887 369 MTAYKMALREYYMQTSI 385 (394)
Q Consensus 369 ~t~l~~a~~~~~~~~~~ 385 (394)
+||||+|.+.|+.+...
T Consensus 155 ~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALK 171 (186)
T ss_dssp CCHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHcCCHHHHH
Confidence 99999999999876643
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.8e-26 Score=172.36 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=119.5
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccc
Q 040887 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329 (394)
Q Consensus 250 g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 329 (394)
+.+++..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+. ++.+++++|+++|++ ++.
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------~~~ 72 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-------PNC 72 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-------SSC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-------CCC
Confidence 5678889999999999999999999999999987665 8889999999999999 999999999999999 999
Q ss_pred cCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887 330 MDED-GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387 (394)
Q Consensus 330 ~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~ 387 (394)
+|.. |+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..++.+.....
T Consensus 73 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~L 130 (136)
T 1d9s_A 73 ADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYL 130 (136)
T ss_dssp CBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999 999999999999999999999999 99999999999999999999987765443
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=5.2e-26 Score=169.86 Aligned_cols=125 Identities=25% Similarity=0.278 Sum_probs=116.1
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 304 (394)
..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999987665 88899999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357 (394)
Q Consensus 305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 357 (394)
|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 91 ~~~~~v~~Ll~~g~~-------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGAD-------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCC-------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999 8999999999999999999999999999986
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=1.7e-26 Score=172.81 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=112.6
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccc
Q 040887 250 GYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNK 329 (394)
Q Consensus 250 g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 329 (394)
|+|+ .++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.|++ ++.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~ 71 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-------VNT 71 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-------ccC
Confidence 5666 67889999999999999999999999987665 78899999999999999999999999999998 899
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchh
Q 040887 330 MDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTS 384 (394)
Q Consensus 330 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~ 384 (394)
+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||+++|...+..+..
T Consensus 72 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHH
Confidence 9999999999999999999999999998 99999999999999999988776554
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.6e-25 Score=170.26 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=115.0
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCc-HHHHH
Q 040887 190 CKNIEDKSPLSLAIEMGNTDVLEYILRSLPS-GISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLY-PIHLA 267 (394)
Q Consensus 190 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~-~l~~a 267 (394)
..+..|.||||+|+..|+.+++++|++.+.. +..+..|.||||+|+ .++.+++++|++.|++++.++..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 3566789999999999999999999987644 666788999999985 89999999999999999999999999 99999
Q ss_pred HHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHH
Q 040887 268 CKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLA 341 (394)
Q Consensus 268 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A 341 (394)
+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|+++|++ ++.++..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-------TRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------------
T ss_pred HHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-------CCccCcCcCcccccC
Confidence 9999999999999997665 88999999999999999999999999999999 999999999998744
No 90
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=5.1e-25 Score=161.42 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=104.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCc
Q 040887 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNT 336 (394)
Q Consensus 257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t 336 (394)
+..|.+|||.|+..|+.+++++|++.+.+. +.++..|.||||+|+..++.+++++|++.|++ ++.+|..|+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~d~~g~t 75 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-------INAPDKHHIT 75 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-------TTCCCTTSCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCCC
Confidence 456789999999999999999999987665 88899999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhh
Q 040887 337 PLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYY 380 (394)
Q Consensus 337 ~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~ 380 (394)
|||+|+..++.+++++|+++| ++++.+|..|.||+++|...+.
T Consensus 76 pL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 76 PLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence 999999999999999999998 9999999999999999965543
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=8.4e-25 Score=163.25 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=113.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCC
Q 040887 256 KNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGN 335 (394)
Q Consensus 256 ~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~ 335 (394)
....+.||||.|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------~~~~d~~g~ 81 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-------VNAVDAIGF 81 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCC
Confidence 3456789999999999999999999997665 88899999999999999999999999999999 999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhH
Q 040887 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAE 387 (394)
Q Consensus 336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~ 387 (394)
||||+|+..|+.+++++|+++| ++++.+|..|.|||++|++.|+.+.....
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999 99999999999999999999987765443
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=184.40 Aligned_cols=140 Identities=18% Similarity=0.117 Sum_probs=122.6
Q ss_pred CCChHHHHHhcCCHHHHHHHHhcCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchH
Q 040887 227 GKSPLQVATKKRNLGVCYLLEVNGYSALK------KNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNI 297 (394)
Q Consensus 227 ~~~~l~~a~~~~~~~~~~~L~~~g~~~~~------~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 297 (394)
..++|+.|+..++.+.++.|+..|.+++. .+..|.||||+|+.. ++.+++++|++.+.+. +.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 44679999999999989889999999887 688999999999997 8999999999997765 8899999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887 298 LHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR 377 (394)
Q Consensus 298 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~ 377 (394)
||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++| ++ .|.||||+|++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad-------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRAL-------VGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC----
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHh
Confidence 9999999999999999999999 9999999999999999999999999999999 65 58999999999
Q ss_pred hhhc
Q 040887 378 EYYM 381 (394)
Q Consensus 378 ~~~~ 381 (394)
.|+.
T Consensus 296 ~g~~ 299 (301)
T 2b0o_E 296 WVIS 299 (301)
T ss_dssp ----
T ss_pred cCCc
Confidence 8864
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=6e-24 Score=156.66 Aligned_cols=121 Identities=38% Similarity=0.510 Sum_probs=112.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887 259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL 338 (394)
Q Consensus 259 ~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L 338 (394)
+|.||||.|+..|+.+++++|++.+... +..+..|.||||+|+..++.+++++|++.|++ ++.+|..|+|||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~~~~g~t~l 72 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPL 72 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-------CcccCCCCCcHH
Confidence 4899999999999999999999987665 77899999999999999999999999999999 899999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 339 HLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 339 ~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
|+|+..++.+++++|+++| ++++.+|..|.||+++|+..++.+......
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 121 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999 999999999999999999999877654443
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=6e-25 Score=164.38 Aligned_cols=128 Identities=24% Similarity=0.285 Sum_probs=115.2
Q ss_pred CCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887 222 ISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301 (394)
Q Consensus 222 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 301 (394)
..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA 83 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999987665 88899999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357 (394)
Q Consensus 302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 357 (394)
+..++.+++++|++.|++ ++.+|..|+||||+|+..+..+++++|.+.+
T Consensus 84 ~~~~~~~~v~~Ll~~ga~-------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGAS-------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHTTCHHHHHHHHHTTCC-------TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHcCCHHHHHHHHHcCCC-------CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 999999999999999999 9999999999999999999999988887766
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=1.1e-24 Score=177.18 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=109.8
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 304 (394)
..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++..+..++.+|..|.||||+|+..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence 45678888888888888888888889999999999999999999999999999999985555688999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCC
Q 040887 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGM 369 (394)
Q Consensus 305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~ 369 (394)
|+.+++++|++.|++ ++.+|..|+||||+|+..++.++++.|++.| ++...++..|.
T Consensus 151 ~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~~ 207 (222)
T 3ehr_A 151 GYADIVQLLLAKGAR-------TDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDY 207 (222)
T ss_dssp TCHHHHHHHHHHTCC-------SCCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred CCHHHHHHHHHcCCC-------CccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhhh
Confidence 999999999999999 8999999999999999999999999999999 88888777654
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=9.1e-24 Score=154.71 Aligned_cols=113 Identities=18% Similarity=0.105 Sum_probs=103.2
Q ss_pred CCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHc
Q 040887 225 SSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKN 304 (394)
Q Consensus 225 ~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 304 (394)
..+.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE 83 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence 56788999999999999999999999999999999999999999999999999999987665 88999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcC
Q 040887 305 GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHG 345 (394)
Q Consensus 305 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 345 (394)
++.+++++|+++|++ ++.+|..|+||||+|...+
T Consensus 84 ~~~~~v~~Ll~~ga~-------~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 84 GHVSCVKLLLSKGAD-------KTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp TCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHCCCHH
T ss_pred CCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHhCCHH
Confidence 999999999999999 8999999999999995433
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=1.6e-23 Score=164.71 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=51.2
Q ss_pred CChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCcccc-CCCchHHHHHHHcCC
Q 040887 228 KSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVT-DNGCNILHFAAKNGH 306 (394)
Q Consensus 228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~ 306 (394)
.||||.|+..|+.++++.|++ |.+++.++..|.||||+|+..|+.+++++|++.+.+. +..+ ..|+||||+|+..|+
T Consensus 45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~ 122 (183)
T 3deo_A 45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVR 122 (183)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCc
Confidence 344444444444444444444 4444444445555555555555555555555444333 3333 445555555555555
Q ss_pred HHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887 307 ADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343 (394)
Q Consensus 307 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 343 (394)
.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 123 ~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 123 PEVVEALVELGAD-------IEVEDERGLTALELARE 152 (183)
T ss_dssp HHHHHHHHHHTCC-------TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHcCCC-------CcCCCCCCCCHHHHHHH
Confidence 5555555555544 44455555555555543
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=3.2e-23 Score=163.01 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=108.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccC-CCCC
Q 040887 257 NKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMD-EDGN 335 (394)
Q Consensus 257 ~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~g~ 335 (394)
+..|.||||.|+..|+.++++.|++ +. .++..|..|.||||+|+..|+.+++++|+++|++ ++.++ ..|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~~~~~g~ 111 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-------LDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCSSSSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCcCCCCCCC
Confidence 4578899999999999999999999 44 5588999999999999999999999999999999 88888 8999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcch
Q 040887 336 TPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQT 383 (394)
Q Consensus 336 t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~ 383 (394)
||||+|+..|+.+++++|+++| ++++.+|..|.|||++|++.+..+.
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTP 158 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred CHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccCcc
Confidence 9999999999999999999999 9999999999999999998866543
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.3e-23 Score=170.94 Aligned_cols=123 Identities=26% Similarity=0.333 Sum_probs=113.0
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCcchhhccccCCC
Q 040887 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEI-PGTNMTMDEVVNKMDED 333 (394)
Q Consensus 255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~ 333 (394)
..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+..|+.+++++|++. |++ ++.+|..
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-------~~~~d~~ 139 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-------LNQQNKL 139 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-------CCCCCTT
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-------ccccCCC
Confidence 34567899999999999999999999987665 88899999999999999999999999999 888 9999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhh
Q 040887 334 GNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIA 386 (394)
Q Consensus 334 g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~ 386 (394)
|+||||+|+..|+.+++++|+++| ++++.+|..|.|||++|+..+..+....
T Consensus 140 g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~ 191 (222)
T 3ehr_A 140 GDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKK 191 (222)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHH
Confidence 999999999999999999999999 9999999999999999999887665433
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=3.6e-23 Score=170.37 Aligned_cols=139 Identities=16% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhcCccccccC-CCCCcHHHHHHHcCC
Q 040887 194 EDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKN-KETLYPIHLACKNGH 272 (394)
Q Consensus 194 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~-~~g~~~l~~a~~~~~ 272 (394)
.|.||||+|+..|+.+++++|++....+..+..|.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 5778888888888888888888844556677778888888888888888888888888887777 678888888888888
Q ss_pred HHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHH
Q 040887 273 ANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYA 352 (394)
Q Consensus 273 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 352 (394)
.+++++|++.+.+. +.+|..|.||||+|+..++ ...+.||||+|+..|+.+++++
T Consensus 124 ~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 124 PEVVEALVELGADI-EVEDERGLTALELAREILK------------------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------------ccCCCCHHHHHHHcChHHHHHH
Confidence 88888888876555 7778888888888874221 2356788888888888888888
Q ss_pred HHhcC
Q 040887 353 LLRYG 357 (394)
Q Consensus 353 Ll~~g 357 (394)
|++.+
T Consensus 179 L~~~~ 183 (244)
T 3ui2_A 179 LEGQV 183 (244)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88765
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=7.3e-23 Score=168.54 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=132.6
Q ss_pred HHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHHhCCCCcccccCCCCCHHHHHHHcCcH
Q 040887 10 FEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQYYPFLINKTNNQGDTPLHCAARAGKL 89 (394)
Q Consensus 10 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 89 (394)
+.++..|+.+.++...... ...+.+|.||||+||+.|+.+++++|++ + .+++.+|..|+||||+|+..|+.
T Consensus 20 l~~~~~g~~~~~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~g~~ 90 (244)
T 3ui2_A 20 LIEWKDGHSPSWVPSSYIA-------ADVVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSD 90 (244)
T ss_dssp EEEESSCCCCEEEEGGGSC-------HHHHHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHHHTCH
T ss_pred HHHHHcCCCcccccccccc-------cccccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHHCCCH
Confidence 3344555655555533222 2245679999999999999999999999 4 47899999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccchhhhhhhhh
Q 040887 90 NTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLAIDDTIKTNI 169 (394)
Q Consensus 90 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (394)
+++++|+++|++++..+ +..|.||||.|+..+ +.
T Consensus 91 ~~v~~Ll~~ga~~~~~~----------~~~g~t~L~~A~~~g------------------~~------------------ 124 (244)
T 3ui2_A 91 KCVRLLAEAGADLDHRD----------MRGGLTALHMAAGYV------------------RP------------------ 124 (244)
T ss_dssp HHHHHHHHTTCCTTCCC----------SSSCCCHHHHHHHTT------------------CH------------------
T ss_pred HHHHHHHHcCCCCCcCC----------CCCCCCHHHHHHHcC------------------CH------------------
Confidence 99999999999975332 256999999998776 22
Q ss_pred hhhHHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCChHHHHHhcCCHHHHHHHHhc
Q 040887 170 INSLVAIAYFLVSLDPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPSGISWSSGKSPLQVATKKRNLGVCYLLEVN 249 (394)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~ 249 (394)
+++++|++.|.+++ .++..|.||||+|+..++. ..+.+||++|+..|+.+++++|.+.
T Consensus 125 -----~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~----------------~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 125 -----EVVEALVELGADIE-VEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp -----HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT----------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc----------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence 89999999999988 6888999999999863321 5678999999999999999999987
Q ss_pred Ccc
Q 040887 250 GYS 252 (394)
Q Consensus 250 g~~ 252 (394)
+.+
T Consensus 183 ~~~ 185 (244)
T 3ui2_A 183 VFE 185 (244)
T ss_dssp HEE
T ss_pred ccc
Confidence 654
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=1.9e-22 Score=183.32 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=115.2
Q ss_pred CChHHHHHhcCCHHHHHHHHhcCcccccc------CCCCCcHHHHHHH---cCCHHHHHHHHHhcCCCCccccCCCchHH
Q 040887 228 KSPLQVATKKRNLGVCYLLEVNGYSALKK------NKETLYPIHLACK---NGHANVMVELLKEWRCPSLFVTDNGCNIL 298 (394)
Q Consensus 228 ~~~l~~a~~~~~~~~~~~L~~~g~~~~~~------~~~g~~~l~~a~~---~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L 298 (394)
.+.|+.|+..|+.+.++.|+..|++++.. +..|.||||+||. .|+.+++++|++.+++. +.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHH
Confidence 46799999999999999999999998877 8899999999977 89999999999988765 88999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHh
Q 040887 299 HFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALR 377 (394)
Q Consensus 299 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~ 377 (394)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.....+.+++.++..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~-------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~~~h~~~~~~~~~~ 282 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL-------VGTVNEAGETALDIARKKHHKECEELLEQAQ-AGTFAFPLHVDYSWVISTE 282 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC-------CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCC-------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCCCcceeeccccCCCc
Confidence 999999999999999999999 9999999999999999999999999999999 9998865555555444433
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=2e-22 Score=139.45 Aligned_cols=93 Identities=43% Similarity=0.594 Sum_probs=83.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887 259 ETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL 338 (394)
Q Consensus 259 ~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L 338 (394)
+|+||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+|||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~g~t~l 72 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------VNAKDKNGRTPL 72 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTTSCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHH
Confidence 4789999999999999999999987665 88899999999999999999999999999998 899999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCC
Q 040887 339 HLAALHGHSQVVYALLRYGRSN 360 (394)
Q Consensus 339 ~~A~~~~~~~~~~~Ll~~g~ad 360 (394)
|+|+..|+.+++++|+++| ++
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g-a~ 93 (93)
T 1n0q_A 73 HLAARNGHLEVVKLLLEAG-AY 93 (93)
T ss_dssp HHHHHTTCHHHHHHHHHTT-CC
T ss_pred HHHHHcCCHHHHHHHHHcC-CC
Confidence 9999999999999999998 64
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=1.9e-21 Score=162.81 Aligned_cols=159 Identities=21% Similarity=0.209 Sum_probs=79.8
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC-C-CC------------------------------CCChHHHHHhcC
Q 040887 191 KNIEDKSPLSLAIEMGNTDVLEYILRSLPSGIS-W-SS------------------------------GKSPLQVATKKR 238 (394)
Q Consensus 191 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~-~~------------------------------~~~~l~~a~~~~ 238 (394)
.|..+.++++.+...|+..+.+++....+.... . .. ..++|+.|+..+
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 456677788888888888777766543322111 0 00 112444444444
Q ss_pred CHHHHHHHHhcCcccc------ccCCCCCcHHHHHHHc---CCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887 239 NLGVCYLLEVNGYSAL------KKNKETLYPIHLACKN---GHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADM 309 (394)
Q Consensus 239 ~~~~~~~L~~~g~~~~------~~~~~g~~~l~~a~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 309 (394)
..+.++.++..|.+++ ..+..|.||||+|+.. |+.+++++|++.+++. +.+|..|+||||+|+..|+.++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence 4444444444444422 2234445555555544 4445555555443333 4444445555555555555555
Q ss_pred HHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887 310 VKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYG 357 (394)
Q Consensus 310 ~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 357 (394)
+++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 221 v~~Ll~~gad-------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 221 LKLLLRGKAS-------IEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCC-------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5555555544 4444555555555555555555555555544
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=3e-22 Score=173.19 Aligned_cols=149 Identities=16% Similarity=0.074 Sum_probs=118.5
Q ss_pred CCCCChHHHHHhc-CCHHHHHHHHhcCccccccC--CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHH
Q 040887 225 SSGKSPLQVATKK-RNLGVCYLLEVNGYSALKKN--KETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFA 301 (394)
Q Consensus 225 ~~~~~~l~~a~~~-~~~~~~~~L~~~g~~~~~~~--~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 301 (394)
..+.++||.|+.. ++.++++.|+..|++++..+ ..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A 275 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA 275 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 4556899999999 99999999999999999988 89999999999999999999999997665 88999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CCCCCcccCCCcHHHHHHhhh
Q 040887 302 AKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGR--SNPDLKNKQGMTAYKMALREY 379 (394)
Q Consensus 302 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--ad~~~~~~~g~t~l~~a~~~~ 379 (394)
+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++.+. ++....+..+.|+++++....
T Consensus 276 ~~~g~~~~v~~LL~~Gad-------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 276 TILGHTGLACLFLKRGAD-------LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHTCHHHHHHHHHTTCC-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHcCcHHHHHHHHHCcCC-------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999998762 233456778889999887654
Q ss_pred hc
Q 040887 380 YM 381 (394)
Q Consensus 380 ~~ 381 (394)
..
T Consensus 349 ~~ 350 (368)
T 3jue_A 349 LM 350 (368)
T ss_dssp --
T ss_pred hh
Confidence 43
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=171.74 Aligned_cols=139 Identities=18% Similarity=0.068 Sum_probs=119.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCC-------CCCCCCChHHHHHhc---CCHHHHHHHHhcCccccccCCCCCcHH
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPSGI-------SWSSGKSPLQVATKK---RNLGVCYLLEVNGYSALKKNKETLYPI 264 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~-------~~~~~~~~l~~a~~~---~~~~~~~~L~~~g~~~~~~~~~g~~~l 264 (394)
..++|+.|+..++.+.++.|++.+.... .+..|.||||+|+.. ++.+++++|++.|++++.++..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 4578999999999999999998765533 477899999999997 888999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHc
Q 040887 265 HLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALH 344 (394)
Q Consensus 265 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 344 (394)
|+|+..|+.+++++|++.+++. +.+|..|.||||+|+..++.+++++|++.|++ .|.||||+|+.+
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------TTSSCCC-----
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------CCCChhHHHHhc
Confidence 9999999999999999987766 88999999999999999999999999998854 578999999998
Q ss_pred CCH
Q 040887 345 GHS 347 (394)
Q Consensus 345 ~~~ 347 (394)
|+.
T Consensus 297 g~~ 299 (301)
T 2b0o_E 297 VIS 299 (301)
T ss_dssp ---
T ss_pred CCc
Confidence 864
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=1.2e-22 Score=146.82 Aligned_cols=109 Identities=35% Similarity=0.443 Sum_probs=99.1
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCC
Q 040887 255 KKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDG 334 (394)
Q Consensus 255 ~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g 334 (394)
.++..|.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..++.+++++|++.|++ ++.+|..|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------~~~~d~~g 75 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-------VNARSKDG 75 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-------TTCCCTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------CcccCCCC
Confidence 46788999999999999999999999987665 78899999999999999999999999999998 89999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHH
Q 040887 335 NTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAY 372 (394)
Q Consensus 335 ~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l 372 (394)
+||||+|+..++.+++++|+++| ++++.++..|.+|-
T Consensus 76 ~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 76 NTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp CCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred CCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 99999999999999999999999 99999999999874
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=8.2e-21 Score=158.93 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=130.4
Q ss_pred CCCCCCChHHHHHhcCCHHHHHHHHhcCccc-----ccc--------------------------CCCCCcHHHHHHHcC
Q 040887 223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSA-----LKK--------------------------NKETLYPIHLACKNG 271 (394)
Q Consensus 223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~-----~~~--------------------------~~~g~~~l~~a~~~~ 271 (394)
.+..+.++++.+...|+..+..++...-.+. ... .....++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 4456778999998888887766664321110 000 001125799999999
Q ss_pred CHHHHHHHHHhcCCC-----CccccCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887 272 HANVMVELLKEWRCP-----SLFVTDNGCNILHFAAKN---GHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343 (394)
Q Consensus 272 ~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 343 (394)
+.+.+..++..+.+. ++..+..|.||||+|+.. ++.+++++|+++|++ +|.+|..|+||||+|+.
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-------in~~d~~g~TpLh~A~~ 214 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-------LDKQTGKGSTALHYCCL 214 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-------TTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-------ccccCCCCCCHHHHHHH
Confidence 999999999988775 244578899999999999 899999999999999 99999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHHH
Q 040887 344 HGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEKQ 389 (394)
Q Consensus 344 ~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 389 (394)
.|+.+++++|+++| +|++.+|..|.||||+|+..|+.+......+
T Consensus 215 ~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 215 TDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp TTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999 9999999999999999999998777544433
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=6.5e-21 Score=164.79 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=112.5
Q ss_pred cCCCCCcHHHHHHHc-CCHHHHHHHHHhcCCCCcccc--CCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCC
Q 040887 256 KNKETLYPIHLACKN-GHANVMVELLKEWRCPSLFVT--DNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDE 332 (394)
Q Consensus 256 ~~~~g~~~l~~a~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 332 (394)
....+.++||.|+.. ++.++++.|++.+.+. +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-------vn~~d~ 266 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-------VNQADS 266 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCT
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-------CCCCCC
Confidence 334566899999999 9999999999987766 6677 7899999999999999999999999999 999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccCCCcHHHHHHhhhhcchhhhHH
Q 040887 333 DGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQGMTAYKMALREYYMQTSIAEK 388 (394)
Q Consensus 333 ~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 388 (394)
.|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.+......
T Consensus 267 ~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl 321 (368)
T 3jue_A 267 AGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLR 321 (368)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999877754443
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=1.4e-20 Score=130.13 Aligned_cols=93 Identities=35% Similarity=0.495 Sum_probs=85.6
Q ss_pred CCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcC
Q 040887 226 SGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNG 305 (394)
Q Consensus 226 ~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 305 (394)
+|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 3789999999999999999999999999999999999999999999999999999987766 888999999999999999
Q ss_pred CHHHHHHHHhCCCC
Q 040887 306 HADMVKAIIEIPGT 319 (394)
Q Consensus 306 ~~~~~~~Ll~~~~~ 319 (394)
+.+++++|++.|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999874
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=8.1e-20 Score=166.10 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=113.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCC-CCC------CCCCCChHHHHHh---cCCHHHHHHHHhcCccccccCCCCCcHH
Q 040887 195 DKSPLSLAIEMGNTDVLEYILRSLPS-GIS------WSSGKSPLQVATK---KRNLGVCYLLEVNGYSALKKNKETLYPI 264 (394)
Q Consensus 195 ~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~------~~~~~~~l~~a~~---~~~~~~~~~L~~~g~~~~~~~~~g~~~l 264 (394)
..+.|+.|+..|+.+.++.|++.+.. +.. +..|.||||+|+. .|+.+++++|++.|++++.++..|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 34679999999999999999998755 222 6789999999966 8899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHH
Q 040887 265 HLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAAL 343 (394)
Q Consensus 265 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 343 (394)
|+|+..|+.+++++|++.+++. +.+|..|.||||+|+..|+.+++++|+++|++ ++. +|+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~-------~~~------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFA------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC-------CCC------Ccceeecc
Confidence 9999999999999999998776 88999999999999999999999999999998 554 57776654
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=2.5e-20 Score=134.57 Aligned_cols=108 Identities=28% Similarity=0.308 Sum_probs=97.1
Q ss_pred CCCCCCChHHHHHhcCCHHHHHHHHhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHH
Q 040887 223 SWSSGKSPLQVATKKRNLGVCYLLEVNGYSALKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAA 302 (394)
Q Consensus 223 ~~~~~~~~l~~a~~~~~~~~~~~L~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 302 (394)
.+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.+.+. +..+..|.||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 4577888999999999999999999999999999999999999999999999999999987665 888999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHH
Q 040887 303 KNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPL 338 (394)
Q Consensus 303 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L 338 (394)
..++.+++++|+++|++ ++.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~-------~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGAD-------VNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSS-------HHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCC-------CCcCCccccccc
Confidence 99999999999999999 999999998873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=3.6e-19 Score=127.06 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=73.1
Q ss_pred ccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCcccC
Q 040887 288 LFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDEDGNTPLHLAALHGHSQVVYALLRYGRSNPDLKNKQ 367 (394)
Q Consensus 288 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ad~~~~~~~ 367 (394)
...+.+|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~ 89 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGAD-------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKF 89 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccC
Confidence 45677888888888888888888888888887 8888888888888888888888888888888 888888888
Q ss_pred CCcHHHHHHhhhhcchh
Q 040887 368 GMTAYKMALREYYMQTS 384 (394)
Q Consensus 368 g~t~l~~a~~~~~~~~~ 384 (394)
|.|||++|+..|..+..
T Consensus 90 g~tpl~~A~~~~~~~~~ 106 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLA 106 (110)
T ss_dssp SCCHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHcCCHHHH
Confidence 88888888888876554
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=1.1e-18 Score=124.50 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=82.2
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCccccCCCchHHHHHHHcCCHHHHHHHHhCCCCCCcchhhccccCCC
Q 040887 254 LKKNKETLYPIHLACKNGHANVMVELLKEWRCPSLFVTDNGCNILHFAAKNGHADMVKAIIEIPGTNMTMDEVVNKMDED 333 (394)
Q Consensus 254 ~~~~~~g~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~ 333 (394)
...+.+|.||||+|+..|+.+++++|++.+.+. +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-------~~~~d~~ 89 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-------VXAQDKF 89 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-------TTCCCTT
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------ccccccC
Confidence 446678899999999999999999999986655 88899999999999999999999999999998 8999999
Q ss_pred CCcHHHHHHHcCCHHHHHHH
Q 040887 334 GNTPLHLAALHGHSQVVYAL 353 (394)
Q Consensus 334 g~t~L~~A~~~~~~~~~~~L 353 (394)
|+||||+|+..|+.+++++|
T Consensus 90 g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp SCCHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999999987
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.79 E-value=8.2 Score=20.05 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHHHcCcHHHHHHHHh
Q 040887 80 LHCAARAGKLNTATALVD 97 (394)
Q Consensus 80 L~~A~~~~~~~~v~~Ll~ 97 (394)
+..||..|+++.++.|-.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 567777788877777754
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=35.55 E-value=96 Score=26.69 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=39.0
Q ss_pred HHhcCCHHHHHHHHHhCCCC-----------ccc--ccCCCCCHHHHHHHcCcHHHHHHHHhh
Q 040887 49 AAKSGHGEITAKIAQYYPFL-----------INK--TNNQGDTPLHCAARAGKLNTATALVDF 98 (394)
Q Consensus 49 A~~~g~~~~v~~Ll~~~~~~-----------~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 98 (394)
.+..|+...|+..+..|+.. +|. .-..|.|.+|+|++..+.+++..|+..
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 34579999999999887632 111 135689999999999999999999974
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.46 E-value=2.1e+02 Score=23.92 Aligned_cols=292 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHhccchhhhhccCCccchhhHhhhcCCCCchHHHHHHhcCCHHHHHHHHH--hCCCCcccccCCCCCHH
Q 040887 3 EVLDPAYFEAAIRGNIDDFLFSDIPKQDLHHIFEKVLTDGSSLLHVAAKSGHGEITAKIAQ--YYPFLINKTNNQGDTPL 80 (394)
Q Consensus 3 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L 80 (394)
+....+|++-.+.+....+......+.-. --..|.+|.-.|......++.+-.+.+.. .+...--..|..|...+
T Consensus 1 ~~~~~~l~e~~r~~~~~~~~l~~~~g~i~---~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vv 77 (351)
T 3gvo_A 1 GTGRSRLLEDFRNNRFPNLQLRDLIGHIV---EFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVI 77 (351)
T ss_dssp --CCCHHHHHHHTTCCTTCCGGGGTTCHH---HHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHH
T ss_pred CCCccHHHHHHhCCCCCCcCHHHHHhHHH---HHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHH
Q ss_pred HHHHHcCcHHHHHHHHhhccCCCCCCCCcchhhhhhhhcCCcHHHHHHHHhCccceeeecccCCchhhhhhcccCCcccc
Q 040887 81 HCAARAGKLNTATALVDFAKHIPSTSQAPVDLLRMENAMGNTALHEALFMLGRVNVWRTSIAGSSLTMAHSYFLSNPTLA 160 (394)
Q Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
.-.+..++.+....+++. -.+.-.--..+.+|.-.+..++... ..
T Consensus 78 Qklle~~~~~~~~~i~~~--------i~g~~~~l~~~~~G~rvvQk~le~~------------------~~--------- 122 (351)
T 3gvo_A 78 QKFFEFGSLDQKLALATR--------IRGHVLPLALQMYGCRVIQKALESI------------------SS--------- 122 (351)
T ss_dssp HHHHHHCCHHHHHHHHHH--------HTTCHHHHHTSTTHHHHHHHHHHHS------------------CH---------
T ss_pred HHHHhhCCHHHHHHHHHH--------HHhhHHHHhhCHHhHHHHHHHHHhC------------------CH---------
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhc--CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHhCCC----CCCCCCCCChHHHH
Q 040887 161 IDDTIKTNIINSLVAIAYFLVSL--DPKLSCCKNIEDKSPLSLAIEMGNTDVLEYILRSLPS----GISWSSGKSPLQVA 234 (394)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~l~~a 234 (394)
+-...+++. +.-.....|..|...+......+..+..+.+++.... -.....|...+..+
T Consensus 123 --------------~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~ 188 (351)
T 3gvo_A 123 --------------DQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRI 188 (351)
T ss_dssp --------------HHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHH
T ss_pred --------------HHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHH
Q ss_pred HhcCCHHHHHHH---HhcCccccccCCCCCcHHHHHHHcCCHHHHHHHHH--hcCCCCccccCCCchHHHHHHHcCCHHH
Q 040887 235 TKKRNLGVCYLL---EVNGYSALKKNKETLYPIHLACKNGHANVMVELLK--EWRCPSLFVTDNGCNILHFAAKNGHADM 309 (394)
Q Consensus 235 ~~~~~~~~~~~L---~~~g~~~~~~~~~g~~~l~~a~~~~~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 309 (394)
......+-...+ +......-..|..|.-.+..+...+..+....+++ .+.......+..|...+.-+...+..+.
T Consensus 189 le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~ 268 (351)
T 3gvo_A 189 LEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 268 (351)
T ss_dssp HHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHhCCCCCCcchhhcc------------ccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040887 310 VKAIIEIPGTNMTMDEVVN------------KMDEDGNTPLHLAALHGHSQVVYALLR 355 (394)
Q Consensus 310 ~~~Ll~~~~~~~~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 355 (394)
-+.+++.- +. .+|..|+..+..+...+..+--+.+++
T Consensus 269 r~~ii~el---------~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 269 RALLIDEV---------CCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp HHHHHHHH---------HSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHH---------hcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHH
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=26.38 E-value=2e+02 Score=24.83 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHcCCHHHHHHHHhCCCCCCcchh-----hccccC--CCCCcHHHHHHHcCCHHHHHHHHhcC
Q 040887 302 AKNGHADMVKAIIEIPGTNMTMDE-----VVNKMD--EDGNTPLHLAALHGHSQVVYALLRYG 357 (394)
Q Consensus 302 ~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g 357 (394)
+..|+...|+.-+..|.+...+-. ++|-.+ .-|.|.+|+|++..+-+++..|+.-+
T Consensus 30 v~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 30 VVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhcc
Confidence 345777777777777766311100 122222 35889999999999999999998743
Done!