BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040888
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 375 HLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAV 434
H +V + + Q FS+ +L A+ NF+ +LG G G+VY+ + DG ++AV
Sbjct: 8 HFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAV 67
Query: 435 KKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
K++ Q F V+ IS H N+ L GFC +L+Y Y NGS+ L
Sbjct: 68 KRLKEERXQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCL 126
Query: 495 H 495
Sbjct: 127 R 127
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 390 AQAAPFSMADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSES 449
Q FS+ +L A+ NF +LG G G+VY+ + DG ++AVK++ Q
Sbjct: 15 GQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQ-GGELQ 73
Query: 450 FSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
F V+ IS H N+ L GFC +L+Y Y NGS+ L
Sbjct: 74 FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 35/219 (15%)
Query: 25 TDSQDASALNVMYTSLHSPSQLSNWKAGGGDPCGEHWKGITCSGSSVTEIKXXXXXXXXX 84
+ QD AL + L +P+ LS+W D C W G+ C + T
Sbjct: 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTT-DCCNRTWLGVLCDTDTQTY----------- 50
Query: 85 XXXXXXXXKSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSE-------NQFSGTVPYSISQ 137
V+ LD+S NL PY +P +L +L N G +P +I++
Sbjct: 51 ---------RVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 138 MSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+++L Y D + + L TLD S N L+G LP S +SL +L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 198 QFTGSI----NVLGKLPLDELNVENNKFSGWVPEELKDI 232
+ +G+I KL + + N+ +G +P ++
Sbjct: 160 RISGAIPDSYGSFSKL-FTSMTISRNRLTGKIPPTFANL 197
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQN 456
+ DL AT NF L+G G G+VY+ DG +A+K+ Q E F ++
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ--GIEEFETEIET 88
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+S RH ++ L+GFC E+ ILIY Y NG+L L+
Sbjct: 89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQN 456
+ DL AT NF L+G G G+VY+ DG +A+K+ Q E F ++
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ--GIEEFETEIET 88
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+S RH ++ L+GFC E+ ILIY Y NG+L L+
Sbjct: 89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVP-YSISQMSELKYXXXXX 148
KS+ YL ++ N IP L L LDLS N F G VP + S
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 149 XXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLS-SLKKLYLQNNQFTGSI--NV 205
D K L+ LDLS N+ +GELP S +LS SL L L +N F+G I N+
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 206 L--GKLPLDELNVENNKFSGWVPEELKDIAK 234
K L EL ++NN F+G +P L + ++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXX 154
+ +L +S N + + NL+ LD+S N FS +P+ + S L++
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH----------- 224
Query: 155 XXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDEL 214
LD+S N+L+G+ R+ ++ + LK L + +NQF G I L L L
Sbjct: 225 -------------LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 215 NVENNKFSGWVPEELKDIAKT 235
++ NKF+G +P+ L T
Sbjct: 272 SLAENKFTGEIPDFLSGACDT 292
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 117 LKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLT 176
+ LD+S N SG +P I M L D L LDLS N+L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 177 GELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
G +P++ ++L+ L ++ L NN +G I +G+
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPN-LKHLDLSENQFSGTVPYSISQMSELK----------- 142
+ +LDVS+NN IP+ + L+HLD+S N+ SG +IS +ELK
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 143 -----------YXXXXXXXXXXXXXDMFQ-KNEKLETLDLSKNQLTGELPRSFASLSSLK 190
Y D + L LDLS N G +P F S S L+
Sbjct: 259 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 191 KLYLQNNQFTGSI---NVLGKLPLDELNVENNKFSGWVPEELKDIAKT 235
L L +N F+G + +L L L++ N+FSG +PE L +++ +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 112 QLPPNLKH------LDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKL 165
++PP L + L LS N SGT+P S+ +S+L+ + L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 166 ETL------------------------DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
ETL LS N+LTGE+P+ L +L L L NN F+G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 202 SINV-LGKL-PLDELNVENNKFSGWVPEEL 229
+I LG L L++ N F+G +P +
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPN----LKHLDLSENQFSGTVPYSISQMSELKYXXXXXX 149
S+ LD+S+NN I L N L+ L L N F+G +P ++S SEL
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV------- 418
Query: 150 XXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLG 207
+L LS N L+G +P S SLS L+ L L N G I ++
Sbjct: 419 -----------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 208 KLPLDELNVENNKFSGWVPEELKDIA 233
L+ L ++ N +G +P L +
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCT 487
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKL-PLDELNV 216
F N + LD+S N L+G +P+ S+ L L L +N +GSI + +G L L+ L++
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 217 ENNKFSGWVPEELKDIA 233
+NK G +P+ + +
Sbjct: 685 SSNKLDGRIPQAMSALT 701
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 159 FQKNEKLETLDLSKNQLTGELP--RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNV 216
F+ + L +LDLS+N L+G + S S S LK L + +N V G L L+ L V
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 217 EN---NKFS-----GWVPE----ELKDIAKTG 236
+ N S GWV ELK +A +G
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISG 184
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLP---PNLKHLDLSENQFSGTVP-YSISQMSELKYXXXXX 148
KS+ YL ++ N IP L L LDLS N F G VP + S
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 149 XXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLS-SLKKLYLQNNQFTGSI--NV 205
D K L+ LDLS N+ +GELP S +LS SL L L +N F+G I N+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 206 L--GKLPLDELNVENNKFSGWVPEELKDIAK 234
K L EL ++NN F+G +P L + ++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXX 154
+ +L +S N + + NL+ LD+S N FS +P+ + S L++
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH----------- 227
Query: 155 XXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDEL 214
LD+S N+L+G+ R+ ++ + LK L + +NQF G I L L L
Sbjct: 228 -------------LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 215 NVENNKFSGWVPEELKDIAKT 235
++ NKF+G +P+ L T
Sbjct: 275 SLAENKFTGEIPDFLSGACDT 295
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 117 LKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLT 176
+ LD+S N SG +P I M L D L LDLS N+L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 177 GELPRSFASLSSLKKLYLQNNQFTGSINVLGK 208
G +P++ ++L+ L ++ L NN +G I +G+
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPN-LKHLDLSENQFSGTVPYSISQMSELK----------- 142
+ +LDVS+NN IP+ + L+HLD+S N+ SG +IS +ELK
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 143 -----------YXXXXXXXXXXXXXDMFQ-KNEKLETLDLSKNQLTGELPRSFASLSSLK 190
Y D + L LDLS N G +P F S S L+
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 191 KLYLQNNQFTGSI---NVLGKLPLDELNVENNKFSGWVPEELKDIAKT 235
L L +N F+G + +L L L++ N+FSG +PE L +++ +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 112 QLPPNLKH------LDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKL 165
++PP L + L LS N SGT+P S+ +S+L+ + L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 166 ETL------------------------DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
ETL LS N+LTGE+P+ L +L L L NN F+G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 202 SINV-LGKL-PLDELNVENNKFSGWVPEEL 229
+I LG L L++ N F+G +P +
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPN----LKHLDLSENQFSGTVPYSISQMSELKYXXXXXX 149
S+ LD+S+NN I L N L+ L L N F+G +P ++S SEL
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV------- 421
Query: 150 XXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI--NVLG 207
+L LS N L+G +P S SLS L+ L L N G I ++
Sbjct: 422 -----------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 208 KLPLDELNVENNKFSGWVPEELKDIA 233
L+ L ++ N +G +P L +
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCT 490
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI-NVLGKL-PLDELNV 216
F N + LD+S N L+G +P+ S+ L L L +N +GSI + +G L L+ L++
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 217 ENNKFSGWVPEELKDIA 233
+NK G +P+ + +
Sbjct: 688 SSNKLDGRIPQAMSALT 704
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 159 FQKNEKLETLDLSKNQLTGELP--RSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNV 216
F+ + L +LDLS+N L+G + S S S LK L + +N V G L L+ L V
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 217 EN---NKFS-----GWVPE----ELKDIAKTG 236
+ N S GWV ELK +A +G
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISG 187
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
FS +L T NF G +GEG G VY+ Y + +AVKK+ ++ E
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 72
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
F + ++ +++ +H N+ EL+GF S+ L+Y Y NGSL + L
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
FS +L T NF G +GEG G VY+ Y + +AVKK+ ++ E
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 72
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
F + ++ +++ +H N+ EL+GF S+ L+Y Y NGSL + L
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSE 448
FS +L T NF G +GEG G VY+ Y + +AVKK+ ++ E
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKG-YVNNTTVAVKKL-AAMVDITTEE 66
Query: 449 ---SFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
F + ++ +++ +H N+ EL+GF S+ L+Y Y NGSL + L
Sbjct: 67 LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 115
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G+ G V+RA++ G +AVK + F F V + R+RH NI +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++ + ++ +Y GSL+ LH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLH 126
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G+ G V+RA++ G +AVK + F F V + R+RH NI +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++ + ++ +Y GSL+ LH
Sbjct: 104 TQPPNLSIVTEYLSRGSLYRLLH 126
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
S +D SN NL +P LPP K L LS+N S IS +SEL+
Sbjct: 34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F N+ LE LD+S N+L S ++SL+ L L N F
Sbjct: 93 FHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDF 133
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 25/105 (23%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXX 152
+S+ L++S+N L S+ LPP +K LDL N+ ++P ++ +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHL-------------- 472
Query: 153 XXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+ L+ L+++ NQL F L+SL+ ++L +N
Sbjct: 473 ----------QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G +++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G +++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPRGEVYKEL 104
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
RH NI L G+ + LI +Y G+++ L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 126
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ + K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDSTRVYLILEYAPLGTVYREL 99
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
RH NI L G+ + LI +Y G+++ L
Sbjct: 92 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 126
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKI-DSSHFQRANSESFSEIVQNIS 458
N R LGEG G+V+ A+ D ++AVK + D+S R + +E++ N+
Sbjct: 14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL- 72
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+H +I + G C E I++++Y ++G L++FL
Sbjct: 73 --QHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFL 106
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
RH NI L G+ + LI +Y G+++ L
Sbjct: 83 RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ 117
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 65 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 98
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 68 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 101
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
++G G G V +AK+ K +A+K+I+S ++A F ++ +SR+ H NI +L G
Sbjct: 16 VVGRGAFGVVCKAKW-RAKDVAIKQIESESERKA----FIVELRQLSRVNHPNIVKLYGA 70
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C L+ +Y GSL+ LH
Sbjct: 71 CLNP--VCLVMEYAEGGSLYNVLH 92
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 67 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 100
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 69 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 102
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 412 LLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
++G G G V +AK+ K +A+K+I+S ++A F ++ +SR+ H NI +L G
Sbjct: 15 VVGRGAFGVVCKAKW-RAKDVAIKQIESESERKA----FIVELRQLSRVNHPNIVKLYGA 69
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C L+ +Y GSL+ LH
Sbjct: 70 CLNP--VCLVMEYAEGGSLYNVLH 91
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 66 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 99
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 70 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 71 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 104
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 395 FSMADLLTATANF------ATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDS--SHFQRAN 446
FS +L T NF G GEG G VY+ Y + +AVKK+ +
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEEL 64
Query: 447 SESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ F + ++ ++ +H N+ EL+GF S+ L+Y Y NGSL + L
Sbjct: 65 KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRL 112
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRI 460
A +F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH NI L G+ + LI +Y G+++ L
Sbjct: 63 RHPNILRLYGYFHDATRVYLILEYAPLGTVYREL 96
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
P+L L+L NQ +G P + S ++ MF +L+TL+L NQ
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 175 LTGELPRSFASLSSLKKLYLQNNQFTGSINV 205
++ +P SF L+SL L L +N F + ++
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN--VLGKLPLDELN 215
+F + L L+L +NQLTG P +F S +++L L N+ N LG L LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 216 VENNKFSGWVP 226
+ +N+ S +P
Sbjct: 109 LYDNQISCVMP 119
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 26 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 85
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 86 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 122
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 29 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 88
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 89 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 125
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIITLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 83 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 142
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 143 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 179
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 24 LTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 83
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 84 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 120
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + A E S++V +
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD----ATEEDLSDLVSEME 92
Query: 459 RIR----HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
++ H NI L+G C++ G +I +Y G+L E+L
Sbjct: 93 MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
N G+ LGEG G+V +A + G+ +AVK + + + SE + +
Sbjct: 24 NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H ++ +L G CS+ G +LI +Y + GSL FL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
N G+ LGEG G+V +A + G+ +AVK + + + SE + +
Sbjct: 24 NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H ++ +L G CS+ G +LI +Y + GSL FL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAK--YPDGKV----LAVKKIDSSHFQRANSESFSEIVQNISR 459
N G+ LGEG G+V +A + G+ +AVK + + + SE + +
Sbjct: 24 NLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF-NVLKQ 82
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H ++ +L G CS+ G +LI +Y + GSL FL
Sbjct: 83 VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
LGEG G+V+ A+ D ++AVK + + + + F + ++ ++H +I
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 83
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
G C+E +++++Y R+G L+ FL
Sbjct: 84 RFFGVCTEGRPLLMVFEYMRHGDLNRFL 111
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
LGEG G+V+ A+ D ++AVK + + + + F + ++ ++H +I
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 77
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
G C+E +++++Y R+G L+ FL
Sbjct: 78 RFFGVCTEGRPLLMVFEYMRHGDLNRFL 105
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 413 LGEGTIGRVYRAKY------PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
LGEG G+V+ A+ D ++AVK + + + + F + ++ ++H +I
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIV 106
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
G C+E +++++Y R+G L+ FL
Sbjct: 107 RFFGVCTEGRPLLMVFEYMRHGDLNRFL 134
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 29 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 89 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
+F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +RH
Sbjct: 13 DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI L G+ + LI +Y G+++ L
Sbjct: 73 NILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
+F GR LG+G G VY A+ K +LA+K + + ++A E V+ S +RH
Sbjct: 13 DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI L G+ + LI +Y G+++ L
Sbjct: 73 NILRLYGYFHDATRVYLILEYAPLGTVYREL 103
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVGYASKGNLREYLR 133
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 29 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 89 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA--------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K + +AVK + ++ S+ SE+
Sbjct: 37 LTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKM 96
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I Y G+L E+L
Sbjct: 97 IGKHKNIINLLGACTQDGPLYVIVAYASKGNLREYLR 133
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 29 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 89 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 407 FATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNIS 458
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 71 LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKM 130
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 131 IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 167
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 14 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 74 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 29 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 88
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 89 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 126
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 18 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 77
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 78 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 115
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKY------PDGKVLAVKKI-DSSHFQRANSESFSEIVQNIS 458
+ R LGEG G+V+ A+ D ++AVK + D + R + + +E++ N+
Sbjct: 16 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNL- 74
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+H +I + G C + I++++Y ++G L++FL
Sbjct: 75 --QHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFL 108
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 22 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 81
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 82 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 119
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 406 NFATGRLLGEGTIGRVYRA------KYPDGKV--LAVKKIDSSHFQRANSESFSEIVQNI 457
G+ LGEG G+V A K +V +AVK + S ++ S+ SE+
Sbjct: 21 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 80
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C++ G +I +Y G+L E+L
Sbjct: 81 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 118
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRA--KYPDGKV--LAVKKIDSSHFQRANSESFSE 452
+ D+L F GR+LG+G G V A K DG +AVK + + ++ E F
Sbjct: 15 LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLR 74
Query: 453 IVQNISRIRHTNIAELVGFCSEQGHN------ILIYDYYRNGSLHEFL 494
+ H ++A+LVG ++I + ++G LH FL
Sbjct: 75 EAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFL 122
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
+ + SN LK +P +P ++ L L NQF+ VP +S L
Sbjct: 13 TVVRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS 70
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLP- 210
F +L TL LS N+L PR+F L SL+ L L N + G+ N L L
Sbjct: 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Query: 211 ----LDELNVENNK--FSGWVPEELKD--IAKTGG 237
+ L + N S WV E K+ IA+ G
Sbjct: 131 LAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAG 165
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 411 RLLGEGTIGRVYRAKY-PDG----KVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
R LGEG G+V +Y P+G + +AVK K +S A+ + EI++N+ H
Sbjct: 27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY---HE 83
Query: 464 NIAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
NI + G C+E G N LI ++ +GSL E+L
Sbjct: 84 NIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 116
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 411 RLLGEGTIGRVYRAKY-PDG----KVLAVK--KIDSSHFQRANSESFSEIVQNISRIRHT 463
R LGEG G+V +Y P+G + +AVK K +S A+ + EI++N+ H
Sbjct: 15 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLY---HE 71
Query: 464 NIAELVGFCSEQGHN--ILIYDYYRNGSLHEFL 494
NI + G C+E G N LI ++ +GSL E+L
Sbjct: 72 NIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 104
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---- 460
+F G LLG+G+ VYRA+ G +A+K ID +A + VQN +I
Sbjct: 12 DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKA---GMVQRVQNEVKIHCQL 68
Query: 461 RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+H +I EL + + + L+ + NG ++ +L
Sbjct: 69 KHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYL 102
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 411 RLLGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
R LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI
Sbjct: 19 RQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNI 76
Query: 466 AELVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
+ G C G LI ++ GSL E+L
Sbjct: 77 VKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQ 108
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP------DGKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
N R +GEG GRV++A+ P ++AVK + ++ F ++
Sbjct: 48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD-FQREAALMAE 106
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ NI +L+G C+ L+++Y G L+EFL
Sbjct: 107 FDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLR 142
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G G V+ + + +A+K I + E F E + + ++ H + +L G C
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC 69
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
EQ L++++ +G L ++L
Sbjct: 70 LEQAPICLVFEFMEHGCLSDYLR 92
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G G V+ + + +A+K I + E F E + + ++ H + +L G C
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC 74
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
EQ L++++ +G L ++L
Sbjct: 75 LEQAPICLVFEFMEHGCLSDYLR 97
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G G V+ + + +A+K I + E F E + + ++ H + +L G C
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC 71
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
EQ L++++ +G L ++L
Sbjct: 72 LEQAPICLVFEFMEHGCLSDYLR 94
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 389 NAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHF 442
+ P+ + A G+ LG G G+V +A K P + +AVK +
Sbjct: 11 QCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEG-- 68
Query: 443 QRANSESFSEIVQNISRIRHT----NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
A + + ++ + + H N+ L+G C++QG ++ I +Y + G+L +L
Sbjct: 69 --ATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYL 123
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G G V+ + + +A+K I + E F E + + ++ H + +L G C
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC 71
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
EQ L++++ +G L ++L
Sbjct: 72 LEQAPICLVFEFMEHGCLSDYLR 94
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNI------- 457
A ++G G G+VYRA + G +AVK + E S+ ++N+
Sbjct: 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAA-----RHDPDEDISQTIENVRQEAKLF 60
Query: 458 SRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ ++H NI L G C ++ + L+ ++ R G L+ L
Sbjct: 61 AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVL 97
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 106
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 107 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 80
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 81 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 110
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 82
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 83 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 112
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 79
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 80 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 109
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 78
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 79 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 108
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I+I +Y GSL +FL
Sbjct: 83 SEEPIYIVI-EYMSKGSLLDFL 103
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 81
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 82 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 111
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 73
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 74 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 103
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I+I +Y GSL +FL
Sbjct: 83 SEEPIYIVI-EYMSKGSLLDFL 103
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 75
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 76 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 74
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 75 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 104
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 76
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 77 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 106
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 413 LGEGTIGRVYRAKYP-----DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
LG+G G V +Y G+V+AVKK+ H + F ++ + ++H NI +
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKL--QHSTEEHLRDFEREIEILKSLQHDNIVK 93
Query: 468 LVGFCSEQGHN--ILIYDYYRNGSLHEFLH 495
G C G LI +Y GSL ++L
Sbjct: 94 YKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 123
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P +P N ++L+L EN + + L+ F L TL
Sbjct: 29 VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+LT ++F LS L++L+L+NN
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
++ YL++ NLKD L+ L+LS N+ P S ++ L+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 154 XXXDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFTGSINVL 206
+ F + LE L+LS N L LP F L L++++L +N + + +VL
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCNCDVL 269
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG-F 471
+G+G G V Y KV AVK I + A +++F ++++RH+N+ +L+G
Sbjct: 29 IGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVI 83
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
E+G ++ +Y GSL ++L
Sbjct: 84 VEEKGGLYIVTEYMAKGSLVDYLR 107
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG-F 471
+G+G G V Y KV AVK I + A +++F ++++RH+N+ +L+G
Sbjct: 20 IGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVI 74
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
E+G ++ +Y GSL ++L
Sbjct: 75 VEEKGGLYIVTEYMAKGSLVDYLR 98
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG-F 471
+G+G G V Y KV AVK I + A +++F ++++RH+N+ +L+G
Sbjct: 14 IGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVI 68
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
E+G ++ +Y GSL ++L
Sbjct: 69 VEEKGGLYIVTEYMAKGSLVDYLR 92
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXX 152
KS+ L++S+N L D+I LPP +K LDL N+ ++P + ++
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKL-------------- 443
Query: 153 XXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
E L+ L+++ NQL F L+SL+K++L N + S
Sbjct: 444 ----------EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 358 DYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGT 417
DYK Q K V W ++E + N+ + P++ N G+ LG G
Sbjct: 3 DYKYKQ---KPKYQVRWKIIESYEGNSYTFIDPTQLPYN-EKWEFPRNNLQFGKTLGAGA 58
Query: 418 IGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-----RHTNIAELVGF 471
G+V A + GK AV K+ + E + + +I +H NI L+G
Sbjct: 59 FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118
Query: 472 CSEQGHNILIYDYYRNGSLHEFL 494
C+ G ++I +Y G L FL
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFL 141
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P +P N ++L+L EN + + L+ F L TL
Sbjct: 29 VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+LT ++F LS L++L+L+NN
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
++ YL++ NLKD L+ L+LS N+ P S ++ L+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 154 XXXDMFQKNEKLETLDLSKNQLTGELPRS-FASLSSLKKLYLQNNQFTGSINVL 206
+ F + LE L+LS N L LP F L L++++L +N + + +VL
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNPWHCNCDVL 269
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 413 LGEGTIGRVYRA---------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
LG+GT ++++ + + +VL +K +D +H R SESF E +S++ H
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVL-LKVLDKAH--RNYSESFFEAASMMSKLSHK 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
++ G C NIL+ ++ + GSL +L
Sbjct: 73 HLVLNYGVCVCGDENILVQEFVKFGSLDTYL 103
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + +IRH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKIRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 83 SEEPIYI-VTEYMSKGSLLDFL 103
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 116 NLKHLDLSENQFSGTVPY-SISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
NL L+L +NQ + P ++++++EL+ + ++TLDL+ Q
Sbjct: 70 NLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQ 124
Query: 175 LTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVP 226
+T P A LS+L+ LYL NQ T + G L L++ NN+ + P
Sbjct: 125 ITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP 174
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
+F GR LG+G G VY A+ K ++A+K + S ++ E ++ S +RH
Sbjct: 16 DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 75
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI + + ++ L+ ++ G L++ L
Sbjct: 76 NILRMYNYFHDRKRIYLMLEFAPRGELYKEL 106
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 358 DYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGT 417
DYK Q K V W ++E + N+ + P++ N G+ LG G
Sbjct: 3 DYKYKQ---KPKYQVRWKIIESYEGNSYTFIDPTQLPYN-EKWEFPRNNLQFGKTLGAGA 58
Query: 418 IGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-----RHTNIAELVGF 471
G+V A + GK AV K+ + E + + +I +H NI L+G
Sbjct: 59 FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ G ++I +Y G L FL
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLR 142
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
+F GR LG+G G VY A+ K ++A+K + S ++ E ++ S +RH
Sbjct: 15 DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 74
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI + + ++ L+ ++ G L++ L
Sbjct: 75 NILRMYNYFHDRKRIYLMLEFAPRGELYKEL 105
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRA--KYPDGKVLAVK----KIDSSHFQRANSESF 450
+ D++ G++LGEG G V K DG L V K+D+S QR E
Sbjct: 26 LEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSS-QREIEEFL 84
Query: 451 SEIVQNISRIRHTNIAELVGFCSEQGHN-----ILIYDYYRNGSLHEFL 494
SE + H N+ L+G C E ++I + + G LH +L
Sbjct: 85 SE-AACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
S+P +P N + L L +NQ + P + LK +F +L
Sbjct: 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92
Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
LDL NQLT F L LK+L++ N+ T
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 166 ETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPL 211
+ L L NQ+T P F SL +LK+LYL +NQ LG LP+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-------LGALPV 81
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG-F 471
+G+G G V Y KV AVK I + A +++F ++++RH+N+ +L+G
Sbjct: 201 IGKGEFGDVMLGDYRGNKV-AVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVI 255
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
E+G ++ +Y GSL ++L
Sbjct: 256 VEEKGGLYIVTEYMAKGSLVDYLR 279
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG+G V R K P G+ A K I++ + + + ++H NI L
Sbjct: 12 LGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 71
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
SE+G + L++D G L E
Sbjct: 72 ISEEGFHYLVFDLVTGGELFE 92
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 412 LLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
L+GEG+ G V + + D G+++A+KK S + + ++ + ++RH N+ L+
Sbjct: 32 LVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLE 91
Query: 471 FCSEQGHNILIYDY 484
C ++ L++++
Sbjct: 92 VCKKKKRWYLVFEF 105
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 72
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 73 SEEPIXI-VTEYMSKGSLLDFL 93
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 12/91 (13%)
Query: 413 LGEGTIGRVYRA---------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
LG+GT ++++ + + +VL +K +D +H R SESF E +S++ H
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVL-LKVLDKAH--RNYSESFFEAASMMSKLSHK 72
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
++ G C NIL+ ++ + GSL +L
Sbjct: 73 HLVLNYGVCFCGDENILVQEFVKFGSLDTYL 103
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 358 DYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGT 417
DYK Q K V W ++E + N+ + P++ N G+ LG G
Sbjct: 3 DYKYKQ---KPKYQVRWKIIESYEGNSYTFIDPTQLPYN-EKWEFPRNNLQFGKTLGAGA 58
Query: 418 IGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-----RHTNIAELVGF 471
G+V A + GK AV K+ + E + + +I +H NI L+G
Sbjct: 59 FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ G ++I +Y G L FL
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLR 142
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 358 DYKSNQDHYKGNLFVFWHLLEVNQFNNVKSTNAQAAPFSMADLLTATANFATGRLLGEGT 417
DYK Q K V W ++E + N+ + P++ N G+ LG G
Sbjct: 3 DYKYKQ---KPKYQVRWKIIESYEGNSYTFIDPTQLPYN-EKWEFPRNNLQFGKTLGAGA 58
Query: 418 IGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI-----RHTNIAELVGF 471
G+V A + GK AV K+ + E + + +I +H NI L+G
Sbjct: 59 FGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGA 118
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ G ++I +Y G L FL
Sbjct: 119 CTHGGPVLVITEYCCYGDLLNFLR 142
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G G G V+ + + +A+K I + E F E + + ++ H + +L G C
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM---SEEDFIEEAEVMMKLSHPKLVQLYGVC 72
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
EQ L+ ++ +G L ++L
Sbjct: 73 LEQAPICLVTEFMEHGCLSDYLR 95
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG+G V R K P G+ A K I++ + + + ++H NI L
Sbjct: 12 LGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 71
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
SE+G + L++D G L E
Sbjct: 72 ISEEGFHYLVFDLVTGGELFE 92
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 406 NFATGRLLGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---- 460
N G+ LG G G+V A + GK AV K+ + E + + +I
Sbjct: 32 NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHL 91
Query: 461 -RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C+ G ++I +Y G L FL
Sbjct: 92 GQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLR 127
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
G L+G+G G+VY ++ G+V A++ ID ++F V + RH N+
Sbjct: 34 QLEIGELIGKGRFGQVYHGRW-HGEV-AIRLIDIERDNEDQLKAFKREVMAYRQTRHENV 91
Query: 466 AELVGFCSEQGHNILIYDYYRNGSLH 491
+G C H +I + +L+
Sbjct: 92 VLFMGACMSPPHLAIITSLCKGRTLY 117
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 79
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 80 SEEPIYI-VTEYMNKGSLLDFL 100
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + + E+F + Q + ++RH + +L
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 249
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 250 SEEPIYI-VTEYMSKGSLLDFL 270
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 83 SEEPIYI-VCEYMSKGSLLDFL 103
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 83 SEEPIYI-VTEYMSKGSLLDFL 103
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 406 NFATGRLLGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---- 460
N G+ LG G G+V A + GK AV K+ + E + + +I
Sbjct: 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHL 98
Query: 461 -RHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+H NI L+G C+ G ++I +Y G L FL
Sbjct: 99 GQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLR 134
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 83 SEEPIYI-VTEYMSKGSLLDFL 103
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 79
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 80 SEEPIYI-VTEYMNKGSLLDFL 100
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 94 SVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXX 150
+++YL ++ N L+ S+P + NLK L L ENQ +++ L Y
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 151 XXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F K L LDLS NQL F L+ LK L L NQ
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
S+ + +N+++K Q PN+++L L N+ ++ +++ L Y
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS 99
Query: 154 XXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F K L+ L L +NQL F L++L L L +NQ
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 75
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 76 SEEPIYI-VTEYMSKGSLLDFL 96
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 71
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 72 SEEPIYI-VTEYMSKGSLLDFL 92
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
DS+P +P + + LDL + + +++L + +F +L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF----TGSINVLGKLPLDELNVENNKF 221
TL L+ NQL F L+ L KLYL NQ +G + L KL EL + N+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK--ELRLNTNQL 143
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPNLKHLD---LSENQFSGTVPYSISQMSELKYXXXXXXXX 151
+ L ++NN L S+P + +L LD L NQ ++++LK
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 152 XXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
F K L+TL LS NQL +F L L+ + L NQF S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG+G V R K G+ A K I++ + + + ++H NI L
Sbjct: 30 LGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 89
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
SE+GH+ LI+D G L E
Sbjct: 90 ISEEGHHYLIFDLVTGGELFE 110
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 73
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 74 SEEPIYI-VTEYMSKGSLLDFL 94
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
DS+P +P + + LDL + + +++L + +F +L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF----TGSINVLGKLPLDELNVENNKF 221
TL L+ NQL F L+ L KLYL NQ +G + L KL EL + N+
Sbjct: 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK--ELRLNTNQL 143
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPNLKHLD---LSENQFSGTVPYSISQMSELKYXXXXXXXX 151
+ L ++NN L S+P + +L LD L NQ ++++LK
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 152 XXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
F K L+TL LS NQL +F L L+ + L NQF S
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
S+P +P + + L L+ NQ + P + L+ +F K +L
Sbjct: 26 SVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85
Query: 168 LDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
LDL+ N L +PR +F +L SL +YL NN +
Sbjct: 86 LDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPW 117
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 94 SVSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXX 150
+++YL ++ N L+ S+P + NLK L L ENQ +++ L Y
Sbjct: 86 NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 151 XXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F K L LDL NQL F L+ LK+L L +NQ
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
S+ + +N+++K Q PN+++L L N+ ++ +++ L Y
Sbjct: 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS 99
Query: 154 XXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG-SINVLGKLP-L 211
+F K L+ L L +NQL F L++L LYL +NQ V KL L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 212 DELNVENNKFSGWVPEELKD 231
L+++NN+ +PE + D
Sbjct: 160 TRLDLDNNQLQS-LPEGVFD 178
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 116 NLKHLDLSENQFSGTVPY-SISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
NL L+L +NQ + P ++++++EL+ + ++TLDL+ Q
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-----IAGLQSIKTLDLTSTQ 118
Query: 175 LTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWVP 226
+T P A LS+L+ LYL NQ T + G L L++ N + S P
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP 168
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXX 152
+S+ LD+++ + D P NL+ L L NQ + P ++ ++ L+Y
Sbjct: 107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164
Query: 153 XXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
KL TL N+++ P ASL +L +++L+NNQ +
Sbjct: 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 248
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 249 SEEPIYI-VTEYMSKGSLLDFL 269
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 248
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 249 SEEPIYI-VTEYMSKGSLLDFL 269
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQ 455
MADL N+ + +G+G +V A++ GK +AVK ID + ++ + V+
Sbjct: 1 MADL--HIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVR 58
Query: 456 NISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ + H NI +L + L+ +Y G + ++L
Sbjct: 59 IMKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 97
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+GEGT G VY+AK G+++A+K+I + + + + H NI L+
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 473 SEQGHNILIYDY 484
+ L++++
Sbjct: 89 HSERCLTLVFEF 100
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 331
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 332 SEEPIYI-VTEYMSKGSLLDFL 352
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+GEGT G VY+AK G+++A+K+I + + + + H NI L+
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 473 SEQGHNILIYDY 484
+ L++++
Sbjct: 89 HSERCLTLVFEF 100
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 412 LLGEGTIGRVYRAKYP-DGKVL--AVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAE 467
++GEG G+V +A+ DG + A+K++ + + + F+ ++ + ++ H NI
Sbjct: 32 VIGEGNFGQVLKARIKKDGLRMDAAIKRM-KEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L+G C +G+ L +Y +G+L +FL
Sbjct: 91 LLGACEHRGYLYLAIEYAPHGNLLDFLR 118
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 412 LLGEGTIGRVYRAKYP-DGKVL--AVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAE 467
++GEG G+V +A+ DG + A+K++ + + + F+ ++ + ++ H NI
Sbjct: 22 VIGEGNFGQVLKARIKKDGLRMDAAIKRM-KEYASKDDHRDFAGELEVLCKLGHHPNIIN 80
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L+G C +G+ L +Y +G+L +FL
Sbjct: 81 LLGACEHRGYLYLAIEYAPHGNLLDFLR 108
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 412 LLGEGTIGRVYRAKYP-DGKVL--AVKKIDSSHFQRANSESFSEIVQNISRI-RHTNIAE 467
++GEG G+V +A+ DG + A+K++ + + + F+ ++ + ++ H NI
Sbjct: 29 VIGEGNFGQVLKARIKKDGLRMDAAIKRM-KEYASKDDHRDFAGELEVLCKLGHHPNIIN 87
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L+G C +G+ L +Y +G+L +FL
Sbjct: 88 LLGACEHRGYLYLAIEYAPHGNLLDFLR 115
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I++ +Y G L +FL
Sbjct: 83 SEEPIYIVM-EYMSKGCLLDFL 103
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 394 PFSMADLLTATANFA---------TGRLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSS 440
PF+ D A FA +++G G G V R K P + +A+K + +
Sbjct: 9 PFTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAG 68
Query: 441 HFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + + SE + + H NI L G ++ ++I +Y NGSL FL
Sbjct: 69 YTDKQRRDFLSE-ASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLR 122
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
S+ YLD +N L ++P +LP +LKHLD+ NQ ++ + EL
Sbjct: 101 SLEYLDACDNRLS-TLP-ELPASLKHLDVDNNQ--------LTXLPELPALLEYINADNN 150
Query: 154 XXXDMFQKNEKLETLDLSKNQLT--GELPRSFASL 186
+ + LE L + NQLT ELP S +L
Sbjct: 151 QLTXLPELPTSLEVLSVRNNQLTFLPELPESLEAL 185
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 24/131 (18%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
S+P LPP + L++++N ++ + EL + + L+
Sbjct: 73 SLPDNLPPQITVLEITQN--------ALISLPELPASLEYLDACDNRLSTLPELPASLKH 124
Query: 168 LDLSKNQLTG--ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNK--F 221
LD+ NQLT ELP + L+ + NNQ T L +LP L+ L+V NN+ F
Sbjct: 125 LDVDNNQLTXLPELP------ALLEYINADNNQLTX----LPELPTSLEVLSVRNNQLTF 174
Query: 222 SGWVPEELKDI 232
+PE L+ +
Sbjct: 175 LPELPESLEAL 185
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQL 175
NL L L NQ P +++L Y +F K L+ L L NQL
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 176 TGELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLPLDEL 214
+F L+ LK L L NNQ G+ + L KL + +L
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXD 157
+D S+ L +IP +P + K LDL N+ S + ++++L+
Sbjct: 21 VDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F++ + LETL ++ N+L F L +L +L L NQ
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPN-------LKHLDLSENQFSGTVPYSISQMSELKYXXX 146
+++ L + N LK LPP L +L L N+ +++ LK
Sbjct: 110 NLAELRLDRNQLK-----SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 147 XXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSIN 204
F K +L+TL L NQL +F SL LK L LQ N + + N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 412 LLGEGTIGRVYRA--KYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
++G G G V R K P K +A+K + + +R E SE + + H NI
Sbjct: 21 VIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSE-ASIMGQFEHPNIIR 79
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G + +++ ++ NG+L FL
Sbjct: 80 LEGVVTNSMPVMILTEFMENGALDSFLR 107
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ + +A+K + + ESF E Q + +++H + +L
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGTM---SPESFLEEAQIMKKLKHDKLVQLYAVV 73
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 74 SEEPIYI-VTEYMNKGSLLDFL 94
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 412 LLGEGTIGRVYRA--KYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
++G G G V R K P K +A+K + + +R E SE + + H NI
Sbjct: 23 VIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSE-ASIMGQFEHPNIIR 81
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G + +++ ++ NG+L FL
Sbjct: 82 LEGVVTNSMPVMILTEFMENGALDSFLR 109
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 248
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y GSL +FL
Sbjct: 249 SEEPIYI-VGEYMSKGSLLDFL 269
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 27 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 84
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 85 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 126
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 10 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 67
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 68 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 109
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 138
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 37 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 94
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ +Y NGSL FL
Sbjct: 95 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLR 136
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G V+ + +A+K + + E+F + Q + ++RH + +L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTM---SPEAFLQEAQVMKKLRHEKLVQLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
SE+ I + +Y G L +FL
Sbjct: 83 SEEPIYI-VTEYMSKGCLLDFL 103
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
+ +D S +L S+P +P + L L +NQ + P ++++L
Sbjct: 20 TTVDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
+F K +L L L+ NQL +PR +F +L SL ++L NN +
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K +AVK + S SE+ H
Sbjct: 44 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 103
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
NI L+G C+ G ++I +Y G L FL
Sbjct: 104 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 135
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 89 TKQRPIFIITEYMANGCLLNYLR 111
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 413 LGEGTIGRVYR------AKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
LGE G+VY+ A + +A+K + + E F +R++H N+
Sbjct: 34 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVV 92
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
L+G ++ +I+ Y +G LHEFL
Sbjct: 93 CLLGVVTKDQPLSMIFSYCSHGDLHEFL 120
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
S+P +P + L L NQ + P +++L Y +F K KL
Sbjct: 33 SVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTH 92
Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
L L NQL F +L SL +YL NN +
Sbjct: 93 LALHINQLKSIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 88
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 89 TKQRPIFIITEYMANGCLLNYLR 111
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 226 PEELKDIA 233
PE ++
Sbjct: 142 PEYFSNLT 149
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
D+F + L LDLS+ QL P +F SLSSL+ L + +NQ
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 411 RLLGEGTIGRVYRA--KYPDGK---VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
+++G G G VY+ K GK +A+K + + + ++ + E + + H NI
Sbjct: 50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGE-AGIMGQFSHHNI 108
Query: 466 AELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G S+ ++I +Y NG+L +FL
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLR 138
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 413 LGEGTIGRVYR------AKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
LGE G+VY+ A + +A+K + + E F +R++H N+
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVV 75
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
L+G ++ +I+ Y +G LHEFL
Sbjct: 76 CLLGVVTKDQPLSMIFSYCSHGDLHEFL 103
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K +AVK + S SE+ H
Sbjct: 28 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 87
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
NI L+G C+ G ++I +Y G L FL
Sbjct: 88 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K +AVK + S SE+ H
Sbjct: 51 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 110
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
NI L+G C+ G ++I +Y G L FL
Sbjct: 111 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 142
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K +AVK + S SE+ H
Sbjct: 46 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 105
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
NI L+G C+ G ++I +Y G L FL
Sbjct: 106 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 137
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
+ +D S +L S+P +P + L L +NQ + P ++++L
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
+F K +L L L+ NQL +PR +F +L SL ++L NN +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 105
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 165
Query: 226 PEELKDIA 233
PE ++
Sbjct: 166 PEYFSNLT 173
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
D+F + L LDLS+ QL P +F SLSSL+ L + +N F
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 406 NFATGRLLGEGTIGRVYRA-KYPDGKV-----LAVKKIDSSHFQRANSESFSEIVQNISR 459
N G++LG G G+V A Y K +AVK + SE+
Sbjct: 46 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 105
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
H NI L+G C+ G LI++Y G L +L
Sbjct: 106 GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLR 141
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
PNL++LDLS N + S + L+ + F+ +L+ L LS+NQ
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 175 LTG---ELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNVENNKFSGWV 225
++ EL + L L L L +N+ L KLPL +L K WV
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNK-------LKKLPLTDL----QKLPAWV 190
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 74 TKQRPIFIITEYMANGCLLNYLR 96
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 79
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 80 TKQRPIFIITEYMANGCLLNYLR 102
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 73
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 74 TKQRPIFIITEYMANGCLLNYLR 96
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K +AVK + S SE+ H
Sbjct: 51 GKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHM 110
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
NI L+G C+ G ++I +Y G L FL
Sbjct: 111 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 142
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS---RIRHTNIAELV 469
+GEGT G VY+A+ G+ A+KKI ++ + S ++ IS ++H+NI +L
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKI---RLEKEDEGIPSTTIREISILKELKHSNIVKLY 66
Query: 470 GFCSEQGHNILIYDY 484
+ +L++++
Sbjct: 67 DVIHTKKRLVLVFEH 81
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 72
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 73 TKQRPIFIITEYMANGCLLNYLR 95
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS---RIRHTNIAELV 469
+GEGT G VY+A+ G+ A+KKI ++ + S ++ IS ++H+NI +L
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKI---RLEKEDEGIPSTTIREISILKELKHSNIVKLY 66
Query: 470 GFCSEQGHNILIYDY 484
+ +L++++
Sbjct: 67 DVIHTKKRLVLVFEH 81
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNIS---RIRHTNIAELV 469
+GEGT G VY+A+ G+ A+KKI ++ + S ++ IS ++H+NI +L
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKI---RLEKEDEGIPSTTIREISILKELKHSNIVKLY 66
Query: 470 GFCSEQGHNILIYDY 484
+ +L++++
Sbjct: 67 DVIHTKKRLVLVFEH 81
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 29/118 (24%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
+ +P LPP+ LDL N+ ++E+K F+ + L
Sbjct: 44 EKVPKDLPPDTALLDLQNNK-----------ITEIKDGD-------------FKNLKNLH 79
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNKFS 222
TL L N+++ P +FA L L++LYL NQ + K+P L EL V N+ +
Sbjct: 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT 134
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXX 152
K +SY+ +++ N+ +IP LPP+L L L N+ + S+ ++ L
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 153 XXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
L L L+ N+L ++P A ++ +YL NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ NQLT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 29/118 (24%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
+ +P LPP+ LDL N+ ++E+K F+ + L
Sbjct: 44 EKVPKDLPPDTALLDLQNNK-----------ITEIKDGD-------------FKNLKNLH 79
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNKFS 222
TL L N+++ P +FA L L++LYL NQ + K+P L EL V N+ +
Sbjct: 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT 134
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 93 KSVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXX 152
K +SY+ +++ N+ +IP LPP+L L L N+ + S+ ++ L
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229
Query: 153 XXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG 201
L L L+ N+L ++P A ++ +YL NN +
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +A+K I + + F E + + + H + +L G C
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM---SEDEFIEEAKVMMNLSHEKLVQLYGVC 68
Query: 473 SEQGHNILIYDYYRNGSLHEFLH 495
++Q +I +Y NG L +L
Sbjct: 69 TKQRPIFIITEYMANGCLLNYLR 91
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ NQLT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L + NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 60
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 61 ELNHPNIVKLLDVIHTENKLYLVFEF 86
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P LP N+ L+L+ NQ + ++ S+L ++ QK L+ L
Sbjct: 29 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 88
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+L+ ++FA ++L +L+L +N
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSN 117
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L + NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 1 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 59
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 60 ELNHPNIVKLLDVIHTENKLYLVFEF 85
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L + NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 60
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 61 ELNHPNIVKLLDVIHTENKLYLVFEF 86
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ NQLT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L + NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 60
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 61 ELNHPNIVKLLDVIHTENKLYLVFEF 86
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LGEGT G VY+A + +A+K+I H + + V + ++H NI EL
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSV 101
Query: 472 CSEQGHNILIYDYYRN 487
LI++Y N
Sbjct: 102 IHHNHRLHLIFEYAEN 117
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 226 PEELKDIA 233
PE ++
Sbjct: 142 PEYFSNLT 149
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
D+F + L LDLS+ QL P +F SLSSL+ L + +N F
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L + NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 3 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 61
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 62 ELNHPNIVKLLDVIHTENKLYLVFEF 87
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQN 456
AD N+ + +G+G +V A++ GK +AVK ID + ++ + V+
Sbjct: 7 ADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRI 66
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ + H NI +L + L+ +Y G + ++L
Sbjct: 67 MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 401 LTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNIS 458
L NF +GEGT G VY+A+ G+V+A+KKI + + S + EI +
Sbjct: 3 LVDMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLK 61
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDY 484
+ H NI +L+ + L++++
Sbjct: 62 ELNHPNIVKLLDVIHTENKLYLVFEF 87
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 413 LGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+GEG+ G V++ + D G+++A+KK S + ++ + +++H N+ L+
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70
Query: 472 CSEQGHNILIYDYYRNGSLHEF 493
+ L+++Y + LHE
Sbjct: 71 FRRKRRLHLVFEYCDHTVLHEL 92
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 104 NLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNE 163
NL++ +P + N + L+L ENQ S + L+ F
Sbjct: 54 NLRE-VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112
Query: 164 KLETLDLSKNQLTGELPRSFASLSSLKKLYLQNN 197
L TL+L N+LT +F LS LK+L+L+NN
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 103 NNLKDSIP---YQLPPNLKHLDLSE-NQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDM 158
NN +SIP + P+L+ LDL E + S + +S L+Y
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-- 202
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
KL+ LDLS N L+ P SF L L+KL++ +Q
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
P+L+ L+L+EN S P + + + L+ +F L LD+S+N+
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115
Query: 175 LTGELPRSFASLSSLKKL--------YLQNNQFTGSINVLGKLPLDELNV 216
+ L F L +LK L Y+ + F+G +N L +L L++ N+
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-LNSLEQLTLEKCNL 164
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P LP N+ L+L+ NQ + ++ S+L ++ QK L+ L
Sbjct: 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+L+ ++FA ++L +L+L +N
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSN 107
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 399 DLLT---ATANFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEI 453
D+LT +F GR LG+G G VY A+ ++A+K + S ++ E
Sbjct: 14 DILTRHFTIDDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRRE 73
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
++ + + H NI L + ++ LI +Y G L++ L
Sbjct: 74 IEIQAHLHHPNILRLYNYFYDRRRIYLILEYAPRGELYKEL 114
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 24 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 83
Query: 169 DLSKNQLTGELPRSFASLSSLKKLY-LQNNQFTGSINVLGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL L+ N + +G L L ELNV +N + +
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 143
Query: 226 PEELKDIA 233
PE ++
Sbjct: 144 PEYFSNLT 151
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P LP N+ L+L+ NQ + ++ S+L ++ QK L+ L
Sbjct: 24 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 83
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+L+ ++FA ++L +L+L +N
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSN 112
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQN 456
AD N+ + +G+G +V A++ GK +AVK ID + ++ + V+
Sbjct: 7 ADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRI 66
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ + H NI +L + L+ +Y G + ++L
Sbjct: 67 MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ NQLT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG+G V R K G+ A I++ + + + ++H NI L
Sbjct: 19 LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
SE+GH+ LI+D G L E
Sbjct: 79 ISEEGHHYLIFDLVTGGELFE 99
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 13 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 70
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 71 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 100
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQN 456
AD N+ + +G+G +V A++ GK +AVK ID + ++ + V+
Sbjct: 7 ADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRI 66
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ + H NI +L + L+ +Y G + ++L
Sbjct: 67 MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL 104
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGK-VLAVKKIDSSHFQRANSE-SFSEIVQNISRIRHT 463
+F R LG+G G VY A+ K ++A+K + S ++ E ++ S +RH
Sbjct: 15 DFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHP 74
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI + + ++ L+ ++ G L++ L
Sbjct: 75 NILRMYNYFHDRKRIYLMLEFAPRGELYKEL 105
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 66 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 95
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
S+P LPP L+ L +S+NQ + ++P S++ +L + L+
Sbjct: 135 SLPV-LPPGLQELSVSDNQLA-SLPALPSELCKL-------WAYNNQLTSLPMLPSGLQE 185
Query: 168 LDLSKNQLTGELPRSFASL-SSLKKLYLQNNQFTGSINVLGKLP--LDELNVENNKFSGW 224
L +S NQL S +L S L KL+ NN+ T L LP L EL V N+ +
Sbjct: 186 LSVSDNQLA-----SLPTLPSELYKLWAYNNRLTS----LPALPSGLKELIVSGNRLTSL 236
Query: 225 --VPEELKDIAKTG 236
+P ELK++ +G
Sbjct: 237 PVLPSELKELMVSG 250
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 95 VSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS-------GTVPYSI-----SQMSELK 142
++ L + +NNL S+P LPP L+ L++S NQ + G + SI + + L
Sbjct: 63 ITTLVIPDNNLT-SLP-ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120
Query: 143 YXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGS 202
+ L+ L +S NQL LP A S L KL+ NNQ T
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL-ASLP---ALPSELCKLWAYNNQLTS- 175
Query: 203 INVLGKLP--LDELNVENNKFSGW--VPEEL 229
L LP L EL+V +N+ + +P EL
Sbjct: 176 ---LPMLPSGLQELSVSDNQLASLPTLPSEL 203
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 24 IPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 83
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 84 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 143
Query: 226 PEELKDIA 233
PE ++
Sbjct: 144 PEYFSNLT 151
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 66 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 95
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 23 IPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 82
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 83 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 142
Query: 226 PEELKDIA 233
PE ++
Sbjct: 143 PEYFSNLT 150
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P +P N ++L+L EN + + L+ F L TL
Sbjct: 69 VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N LT +F LS L++L+L+NN
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT-GSINVL-GKLPLDELNVENNKFS 222
LE L++S N P SF LSSLKKL++ N+Q + N G L ELN+ +N S
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 223 GWVPEEL 229
+P +L
Sbjct: 280 S-LPHDL 285
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
R++G G G V R K P + L A+K + + ++ + E + + H NI
Sbjct: 28 RVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGE-ASIMGQFDHPNII 86
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFL 494
L G ++ +++ +Y NGSL FL
Sbjct: 87 HLEGVVTKSKPVMIVTEYMENGSLDTFL 114
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 11 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 69
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 70 NIVKLLDVIHTENKLYLVFEF 90
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 23 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 82
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 83 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 142
Query: 226 PEELKDIA 233
PE ++
Sbjct: 143 PEYFSNLT 150
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 115 PNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQ 174
P L+ ++ S N+ + + S + MF+ E L+TL L N+
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 175 LTGELPRSFASLSSLKKLYLQNNQFT----GSINVLGKLPLDELNVENNKFS-----GWV 225
+T SF LSS++ L L +NQ T G+ + L L LN+ N F+ W+
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPFNCNCYLAWL 174
Query: 226 PEELKDIAKTGGN 238
E L+ GN
Sbjct: 175 GEWLRKKRIVTGN 187
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 13 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 70
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 71 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 100
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 6 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 64
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 65 NIVKLLDVIHTENKLYLVFEF 85
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 10 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 67
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 68 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 97
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEF 82
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 6 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 64
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 65 NIVKLLDVIHTENKLYLVFEF 85
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 5 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 63
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF 84
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEF 82
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEF 82
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 11 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 69
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 70 NIVKLLDVIHTENKLYLVFEF 90
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 76 CTREPPFYIITEFMTYGNLLDYLR 99
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 7 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 65
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 66 NIVKLLDVIHTENKLYLVFEF 86
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+++G G G V R K P + +A+K + + + + + SE + + H NI
Sbjct: 14 KVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSE-ASIMGQFDHPNII 72
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G ++ ++I +Y NGSL FL
Sbjct: 73 HLEGVVTKCKPVMIITEYMENGSLDAFLR 101
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEF 82
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 6 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 64
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 65 NIVKLLDVIHTENKLYLVFEF 85
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 5 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 63
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF 84
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 5 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 63
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF 84
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 5 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 63
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF 84
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 5 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 63
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 64 NIVKLLDVIHTENKLYLVFEF 84
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 7 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 65
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 66 NIVKLLDVIHTENKLYLVFEF 86
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 83 CTREPPFYIIIEFMTYGNLLDYLR 106
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 158 MFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
MF+ +KLE LDLS N + +SF L +LK+L L NQ
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+++G G G V R K P + +A+K + + + + + SE + + H NI
Sbjct: 20 KVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSE-ASIMGQFDHPNII 78
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G ++ ++I +Y NGSL FL
Sbjct: 79 HLEGVVTKCKPVMIITEYMENGSLDAFLR 107
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 396 SMADLLTATANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIV 454
SM + ++ G +LG+G G+ + + + G+V+ +K++ F +F + V
Sbjct: 1 SMPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKEL--IRFDEETQRTFLKEV 58
Query: 455 QNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSL 490
+ + + H N+ + +G + I +Y + G+L
Sbjct: 59 KVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTL 94
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
NF T L E G +++ ++ G + VK + + S F+E + H N+
Sbjct: 13 NFLTK--LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV 69
Query: 466 AELVGFC--SEQGHNILIYDYYRNGSLHEFLH 495
++G C H LI + GSL+ LH
Sbjct: 70 LPVLGACQSPPAPHPTLITHWMPYGSLYNVLH 101
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 96 SYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
+ +D S +L S+P +P + L L +N+ + P ++++L
Sbjct: 12 TTVDCSGKSLA-SVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPR-SFASLSSLKKLYLQNNQF 199
+F K +L L L+ NQL +PR +F +L SL ++L NN +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 79 CTREPPFYIIIEFMTYGNLLDYLR 102
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP + K+LDLS N YS EL+ +Q L TL
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINV-LGKL-PLDELNVENNKFSGW-V 225
L+ N + +F+ LSSL+KL N +G L L ELNV +N + +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 226 PEELKDIA 233
PE ++
Sbjct: 142 PEYFSNLT 149
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 24 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 81
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 82 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 111
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V K+ +AVK I + + F + Q + ++ H + + G C
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEG---SMSEDEFFQEAQTMMKLSHPKLVKFYGVC 72
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
S++ ++ +Y NG L +L
Sbjct: 73 SKEYPIYIVTEYISNGCLLNYL 94
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 78
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 79 CTREPPFYIITEFMTYGNLLDYLR 102
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 76 CTREPPFYIIIEFMTYGNLLDYLR 99
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 28 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 85
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 86 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 115
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 12 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 69
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 70 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 99
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 36 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 93
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 94 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 123
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 36 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 93
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 94 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 123
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 81
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 82 CTREPPFYIITEFMTYGNLLDYLR 105
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIIIEFMTYGNLLDYLR 101
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 413 LGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+GEG+ G+ K DG+ +K+I+ S E V ++ ++H NI +
Sbjct: 32 IGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRES 91
Query: 472 CSEQGHNILIYDYYRNGSL 490
E G ++ DY G L
Sbjct: 92 FEENGSLYIVMDYCEGGDL 110
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 35 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 92
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S + ++ + SL+ LH
Sbjct: 93 ILLFMGY-STKPQLAIVTQWCEGSSLYHHLH 122
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
A + R+LGEG G VY Y + K+ K N E F +
Sbjct: 21 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMK 80
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H +I +L+G E+ I I + Y G L +L
Sbjct: 81 NLDHPHIVKLIGIIEEEPTWI-IMELYPYGELGHYLE 116
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIIIEFMTYGNLLDYLR 101
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNI 465
NF T L E G +++ ++ G + VK + + S F+E + H N+
Sbjct: 13 NFLTK--LNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV 69
Query: 466 AELVGFC--SEQGHNILIYDYYRNGSLHEFLH 495
++G C H LI + GSL+ LH
Sbjct: 70 LPVLGACQSPPAPHPTLITHWXPYGSLYNVLH 101
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
A + R+LGEG G VY Y + K+ K N E F +
Sbjct: 5 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMK 64
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H +I +L+G E+ I I + Y G L +L
Sbjct: 65 NLDHPHIVKLIGIIEEEPTWI-IMELYPYGELGHYLE 100
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYPD---GKVLAVKKIDSSHFQRANSESFSEIVQNIS 458
A + R+LGEG G VY Y + K+ K N E F +
Sbjct: 9 IAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMK 68
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ H +I +L+G E+ I I + Y G L +L
Sbjct: 69 NLDHPHIVKLIGIIEEEPTWI-IMELYPYGELGHYLE 104
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 82
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 83 CTREPPFYIITEFMTYGNLLDYLR 106
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 90
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 91 CTREPPFYIITEFMTYGNLLDYLR 114
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 394 PFSMADLLTATANFA---------TGRLLGEGTIGRVYRA--KYPDGK--VLAVKKIDSS 440
PF+ D A FA +++G G G V K P + +A+K + S
Sbjct: 13 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSG 72
Query: 441 HFQRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ ++ + SE + + H N+ L G ++ ++I ++ NGSL FL
Sbjct: 73 YTEKQRRDFLSE-ASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLR 126
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 75
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 76 CTREPPFYIITEFMTYGNLLDYLR 99
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S ++ + SL+ LH
Sbjct: 66 ILLFMGY-STAPQLAIVTQWCEGSSLYHHLH 95
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
+F L+G G G+V++AK+ DGK +K++ + N+E V+ ++++ H N
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRV------KYNNEKAEREVKALAKLDHVN 65
Query: 465 IAELVG 470
I G
Sbjct: 66 IVHYNG 71
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 396 SMADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIV 454
S AD N+ + +G+G +V A++ G+ +A+K ID + + + V
Sbjct: 6 SCADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREV 65
Query: 455 QNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ + + H NI +L + LI +Y G + ++L
Sbjct: 66 RIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYL 105
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 389 NAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHF 442
+A+ P+ + G+ LG G G+V A K + +AVK +
Sbjct: 2 HAERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT 61
Query: 443 QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
+ SE+ I H N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 62 HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 114
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 77
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 78 CTREPPFYIITEFMTYGNLLDYLR 101
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 7 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 65
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 66 NIVKLLDVIHTENKLYLVFEH 86
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+KKI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEH 82
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 79
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
C+ + +I ++ G+L ++L
Sbjct: 80 CTREPPFYIITEFMTYGNLLDYLR 103
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
SIP L +K LDLS N+ + + + L+ D F LE
Sbjct: 45 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 104
Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
LDLS N L+ F LSSLK L L N +
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 50 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 102
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 131
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 281
Query: 472 CSEQGHNILIYDYYRNGSLHEFL 494
C+ + +I ++ G+L ++L
Sbjct: 282 CTREPPFYIITEFMTYGNLLDYL 304
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%)
Query: 108 SIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLET 167
SIP L +K LDLS N+ + + + L+ D F LE
Sbjct: 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78
Query: 168 LDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
LDLS N L+ F LSSLK L L N +
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 284
Query: 472 CSEQGHNILIYDYYRNGSLHEFL 494
C+ + +I ++ G+L ++L
Sbjct: 285 CTREPPFYIITEFMTYGNLLDYL 307
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 33 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 92
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 93 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 124
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 389 NAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHF 442
+A+ P+ + G+ LG G G+V A K + +AVK +
Sbjct: 2 HAERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT 61
Query: 443 QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
+ SE+ I H N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 62 HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYL 114
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 389 NAQAAPFSMADLLTATANFATGRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHF 442
+A+ P+ + G+ LG G G+V A K + +AVK +
Sbjct: 2 HAERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT 61
Query: 443 QRANSESFSEIVQNISRIRHTNIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
+ SE+ I H N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 62 HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYL 114
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 34 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 93
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 94 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 125
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
G+ +G G+ G VY+ K+ G V AVK ++ + ++F V + + RH N
Sbjct: 24 GQITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 81
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I +G+ S ++ + SL+ LH
Sbjct: 82 ILLFMGY-STAPQLAIVTQWCEGSSLYHHLH 111
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+++G G G V R + P + +A+K + + + +R + SE + + H NI
Sbjct: 55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNII 113
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G + +++ +Y NGSL FL
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLR 142
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 34 GKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 93
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 94 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 125
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 12 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 64
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 65 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 93
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 69 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 128
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFLH 495
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 129 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 161
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 11 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 63
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 64 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 92
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 37 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 89
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 90 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 118
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 323
Query: 472 CSEQGHNILIYDYYRNGSLHEFL 494
C+ + +I ++ G+L ++L
Sbjct: 324 CTREPPFYIITEFMTYGNLLDYL 346
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 17 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 69
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 70 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 98
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQN 456
AD N+ + +G+G +V A++ GK +AVK ID + ++ + V+
Sbjct: 7 ADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRI 66
Query: 457 ISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
+ H NI +L + L+ +Y G + ++L
Sbjct: 67 XKVLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYL 104
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
+F L+G G G+V++AK+ DGK ++++ + N+E V+ ++++ H N
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRV------KYNNEKAEREVKALAKLDHVN 66
Query: 465 IAELVG 470
I G
Sbjct: 67 IVHYNG 72
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+++G G G V R + P + +A+K + + + +R + SE + + H NI
Sbjct: 55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSE-ASIMGQFDHPNII 113
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G + +++ +Y NGSL FL
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLR 142
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+R K+ G+ +AVK I SS +R+ +EI Q + +RH NI +GF
Sbjct: 14 IGKGRFGEVWRGKW-RGEEVAVK-IFSSREERSWFRE-AEIYQTVM-LRHENI---LGFI 66
Query: 473 SEQGHN-------ILIYDYYRNGSLHEFL 494
+ + L+ DY+ +GSL ++L
Sbjct: 67 AADNKDNGTWTQLWLVSDYHEHGSLFDYL 95
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 397 MADLLTATANFATGRLLGEGTIGRVYRA--KYPD----GKVLAVKKIDSSHFQRANSESF 450
MA T ++ LG+G V R K P K++ KK+ + Q+ E+
Sbjct: 23 MATCTRFTDDYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREA- 81
Query: 451 SEIVQNISRI-RHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
I R+ +H NI L SE+G + L++D G L E
Sbjct: 82 -----RICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFE 119
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G V+R + G A K + + H ++ E+ + +Q +S +RH + L
Sbjct: 59 LGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDA 116
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
+ ++IY++ G L E
Sbjct: 117 FEDDNEMVMIYEFMSGGELFE 137
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G V+R + G A K + + H ++ E+ + +Q +S +RH + L
Sbjct: 165 LGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDA 222
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
+ ++IY++ G L E
Sbjct: 223 FEDDNEMVMIYEFMSGGELFE 243
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYL 123
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 32 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 91
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFLH 495
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 124
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRI---RH 462
N L+G G G VY+ D + +AVK F AN ++F +NI R+ H
Sbjct: 14 NLKLLELIGRGRYGAVYKGSL-DERPVAVKV-----FSFANRQNFIN-EKNIYRVPLMEH 66
Query: 463 TNIAE-LVG----FCSEQGHNILIYDYYRNGSLHEFL 494
NIA +VG + +L+ +YY NGSL ++L
Sbjct: 67 DNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL 103
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 27 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 86
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFLH 495
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 87 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 119
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
N+ + +G+G +V A++ G+ +AVK ID + + + V+ + + H
Sbjct: 15 GNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHP 74
Query: 464 NIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI +L + L+ +Y G + ++L
Sbjct: 75 NIVKLFEVIETEKTLYLVMEYASGGEVFDYL 105
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 34 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 93
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFLH 495
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 94 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 126
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 10 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 67
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ + NGSL FL
Sbjct: 68 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR 109
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ + NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR 138
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKV-LAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LG G G VY + + +AVK + + E F + + I+H N+ +L+G
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTME---VEEFLKEAAVMKEIKHPNLVQLLGV 96
Query: 472 CSEQGHNILIYDYYRNGSLHEFL 494
C+ + ++ +Y G+L ++L
Sbjct: 97 CTLEPPFYIVTEYMPYGNLLDYL 119
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 25 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 84
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFLH 495
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 85 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 117
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 398 ADLLTATANFATGRLLGEGTIGRVY--RAKYPDGKVL--AVKKIDSSHFQRANSESFSEI 453
A L AT N + +++G G G V R K P K + A+K + + ++ + E
Sbjct: 39 AKELDAT-NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE- 96
Query: 454 VQNISRIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+ + H NI L G ++ +++ + NGSL FL
Sbjct: 97 ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLR 138
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 98 LDVSNNNLKDSIPY--QLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXX 155
LD+S+N L+ S+P Q P L LD+S N+ + ++ + EL+
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 156 XDMFQKNEKLETLDLSKNQLTGELPRSFAS-LSSLKKLYLQNNQF 199
+ KLE L L+ N LT ELP + L +L L LQ N
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 410 GRLLGEGTIGRVYRA------KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
G+ LG G G+V A K + +AVK + + SE+ I H
Sbjct: 23 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHL 82
Query: 464 NIAELVGFCSEQGHNIL-IYDYYRNGSLHEFL 494
N+ L+G C++ G ++ I ++ + G+L +L
Sbjct: 83 NVVNLLGACTKPGGPLMVITEFCKFGNLSTYL 114
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 411 RLLGEGTIGRVYRAKYPDG-KVLAVKKIDSSHFQRA-------NSESFSEIVQN----IS 458
R LG G G V K +G A+K I S F + N E F E + N +
Sbjct: 42 RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK 101
Query: 459 RIRHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
+ H NI +L ++ + L+ ++Y G L E
Sbjct: 102 SLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFE 135
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P +P + K++DLS N YS S SEL++ + L L
Sbjct: 26 VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINVLGKLPLDELNVENN 219
L+ N + P SF+ L+SL+ L + S + + L +LNV +N
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
+P +P + K++DLS N YS S SEL++ + L L
Sbjct: 21 VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 80
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNNQFTG--SINVLGKLPLDELNVENN 219
L+ N + P SF+ L+SL+ L + S + + L +LNV +N
Sbjct: 81 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G G+ G VY+ K+ D V +K +D + Q ++F V + + RH NI +G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQ---FQAFRNEVAVLRKTRHVNILLFMGY 100
Query: 472 CSEQGHNILIYDYYRNGSLHEFLH 495
++ I + + SL++ LH
Sbjct: 101 MTKDNLAI-VTQWCEGSSLYKHLH 123
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVYRA--KYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+++G G G V K P + +A+K + S + ++ + SE + + H N+
Sbjct: 13 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSE-ASIMGQFDHPNVI 71
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G ++ ++I ++ NGSL FL
Sbjct: 72 HLEGVVTKSTPVMIITEFMENGSLDSFLR 100
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+ KI + + S + EI + + H
Sbjct: 4 NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREI-SLLKELNHP 62
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 63 NIVKLLDVIHTENKLYLVFEF 83
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 406 NFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHT 463
NF +GEGT G VY+A+ G+V+A+ KI + + S + EI + + H
Sbjct: 3 NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREI-SLLKELNHP 61
Query: 464 NIAELVGFCSEQGHNILIYDY 484
NI +L+ + L++++
Sbjct: 62 NIVKLLDVIHTENKLYLVFEF 82
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 404 TANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRH 462
N+ + +G+G +V A++ G+ +A+K ID + + + V+ + + H
Sbjct: 11 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNH 70
Query: 463 TNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
NI +L + LI +Y G + ++L
Sbjct: 71 PNIVKLFEVIETEKTLYLIMEYASGGEVFDYL 102
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 413 LGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G+G V R K G A K I++ + + + ++H+NI L
Sbjct: 12 IGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSNIVRLHDS 71
Query: 472 CSEQGHNILIYDYYRNGSLHE 492
SE+G + L++D G L E
Sbjct: 72 ISEEGFHYLVFDLVTGGELFE 92
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSE-SFSEIVQNISR 459
++ G LG GT G+V K+ G +AVK ++ + + +QN+
Sbjct: 13 VKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL 72
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH +I +L S ++ +Y G L +++
Sbjct: 73 FRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYI 107
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 157 DMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
D+F + L LDLS+ QL P +F SLSSL+ L + +N F
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
+ G +G G G V+ + D ++AVK + ++ E + + + H N
Sbjct: 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQE-ARILKQYSHPN 173
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I L+G C+++ ++ + + G FL
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTN 464
+ G +G G G V+ + D ++AVK + ++ E + + + H N
Sbjct: 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQE-ARILKQYSHPN 173
Query: 465 IAELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
I L+G C+++ ++ + + G FL
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 109 IPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETL 168
IP LP N+ L+L+ NQ P + ++ S+L ++ Q L+ L
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 169 DLSKNQLTGELPRSFASLSSLKKLYLQNN 197
+L N+L+ ++F ++L +L L +N
Sbjct: 79 NLQHNELSQISDQTFVFCTNLTELDLMSN 107
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
N+ LG+G V R + K++ KK+ + FQ+ E+ + +
Sbjct: 7 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA-----RICRK 61
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
++H NI L E+ + L++D G L E
Sbjct: 62 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE 94
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 128 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 171
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 148 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 148 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 148 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
+G+G G V+ K+ G+ +AVK ++ + A+ +EI Q + +RH NI +GF
Sbjct: 45 IGKGRYGEVWMGKW-RGEKVAVKVFFTT--EEASWFRETEIYQTV-LMRHENI---LGFI 97
Query: 473 SEQGHNI-------LIYDYYRNGSLHEFL 494
+ LI DY+ NGSL+++L
Sbjct: 98 AADIKGTGSWTQLYLITDYHENGSLYDYL 126
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 413 LGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRA----NSESFSEIVQNISRIRHTNIAE 467
LGEG VY+A+ + +++A+KKI H A N + EI + + + H NI
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI-KLLQELSHPNIIG 76
Query: 468 LVGFCSEQGHNILIYDY 484
L+ + + L++D+
Sbjct: 77 LLDAFGHKSNISLVFDF 93
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 170
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 125 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
F +KL +DLS NQ++ P +F L SL L L N+ T
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
F +KL +DLS NQ++ P +F L SL L L N+ T
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 125 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 150 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 193
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G+VY+AK + LA K+ + + + EI + ++ H I +L+G
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI-EILATCDHPYIVKLLGAY 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
G ++ ++ G++ +
Sbjct: 78 YHDGKLWIMIEFCPGGAVDAIM 99
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ S VP
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
N+ LG+G V R + K++ KK+ + FQ+ E+ + +
Sbjct: 6 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA-----RICRK 60
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
++H NI L E+ + L++D G L E
Sbjct: 61 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE 93
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y + +AVK + + ++F E + ++H + L
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM---SVQAFLEEANLMKTLQHDKLVRLYAVV 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+ + +I +Y GSL +FL
Sbjct: 78 TREEPIYIITEYMAKGSLLDFL 99
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
N+ LG+G V R + K++ KK+ + FQ+ E+ + +
Sbjct: 30 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA-----RICRK 84
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
++H NI L E+ + L++D G L E
Sbjct: 85 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE 117
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD------GKVLAVKKIDSSHFQRANSESFSEIVQNISR 459
N+ LG+G V R + K++ KK+ + FQ+ E+ + +
Sbjct: 7 NYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA-----RICRK 61
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHE 492
++H NI L E+ + L++D G L E
Sbjct: 62 LQHPNIVRLHDSIQEESFHYLVFDLVTGGELFE 94
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV-GF 471
LG+G G+VY+A+ + VLA K+ + + + EI ++ H NI +L+ F
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI-DILASCDHPNIVKLLDAF 103
Query: 472 CSEQGHNILI 481
E ILI
Sbjct: 104 YYENNLWILI 113
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV-GF 471
LG+G G+VY+A+ + VLA K+ + + + EI ++ H NI +L+ F
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI-DILASCDHPNIVKLLDAF 103
Query: 472 CSEQGHNILI 481
E ILI
Sbjct: 104 YYENNLWILI 113
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELV-GF 471
LG+G G+VY+A+ + VLA K+ + + + EI ++ H NI +L+ F
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI-DILASCDHPNIVKLLDAF 103
Query: 472 CSEQGHNILI 481
E ILI
Sbjct: 104 YYENNLWILI 113
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 411 RLLGEGTIGRVY--RAKYPDGK--VLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
R++G G G V R K P + +A+K + + ++ + E + + H N+
Sbjct: 49 RVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCE-ASIMGQFDHPNVV 107
Query: 467 ELVGFCSEQGHNILIYDYYRNGSLHEFLH 495
L G + +++ ++ NG+L FL
Sbjct: 108 HLEGVVTRGKPVMIVIEFMENGALDAFLR 136
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG+G G+VY+AK + LA K+ + + + EI + ++ H I +L+G
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI-EILATCDHPYIVKLLGAY 85
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
G ++ ++ G++ +
Sbjct: 86 YHDGKLWIMIEFCPGGAVDAIM 107
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
+SIP L +K LDLS N+ + + + L+ D F LE
Sbjct: 44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
LDLS N L+ F LSSL L L N +
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LGEGT VY+ K ++A+K+I H + A + E V + ++H NI L
Sbjct: 10 LGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIRE-VSLLKDLKHANIVTLHDI 68
Query: 472 CSEQGHNILIYDY 484
+ L+++Y
Sbjct: 69 IHTEKSLTLVFEY 81
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G+GT G V++A++ G+ +A+KK+ + + + ++ + ++H N+ L+
Sbjct: 25 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84
Query: 472 CSEQG 476
C +
Sbjct: 85 CRTKA 89
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G+GT G V++A++ G+ +A+KK+ + + + ++ + ++H N+ L+
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 472 CSE--------QGHNILIYDY 484
C +G L++D+
Sbjct: 86 CRTKASPYNRCKGSIYLVFDF 106
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G+GT G V++A++ G+ +A+KK+ + + + ++ + ++H N+ L+
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 472 CSEQG 476
C +
Sbjct: 86 CRTKA 90
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFS 451
+F+ R++G G G VY + D GK+ A+K +D + E+ +
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA 236
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFS 451
+F+ R++G G G VY + D GK+ A+K +D + E+ +
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA 236
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 413 LGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
+G+GT G V++A++ G+ +A+KK+ + + + ++ + ++H N+ L+
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 472 CSEQG 476
C +
Sbjct: 86 CRTKA 90
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFS 451
+F+ R++G G G VY + D GK+ A+K +D + E+ +
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA 236
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 406 NFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFS 451
+F+ R++G G G VY + D GK+ A+K +D + E+ +
Sbjct: 189 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA 235
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXX 153
S+ L+V +N L D +P +LP +L LD+SEN FSG +SEL
Sbjct: 258 SLEALNVRDNYLTD-LP-ELPQSLTFLDVSENIFSG--------LSELPPNLYYLNASSN 307
Query: 154 XXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLP--- 210
+ LE L++S N+L ELP L L S N L ++P
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL----------IASFNHLAEVPELP 356
Query: 211 --LDELNVENNKFSGW--VPEELKDI 232
L +L+VE N + +PE ++D+
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDL 382
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 21 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 73
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 74 CNIVRLRYF 82
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGFCSEQG 476
NI L F G
Sbjct: 73 CNIVRLRYFFYSSG 86
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 33 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 85
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 86 CNIVRLRYF 94
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 48 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 100
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 101 CNIVRLRYF 109
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 32 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 84
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 85 CNIVRLRYF 93
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 39 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 91
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 92 CNIVRLRYF 100
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 32 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 84
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 85 CNIVRLRYF 93
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 106
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 107 CNIVRLRYF 115
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 28 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 80
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 81 CNIVRLRYF 89
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 24 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 76
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 77 CNIVRLRYF 85
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 25 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 77
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 78 CNIVRLRYF 86
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 106
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 107 CNIVRLRYF 115
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEI-VQNISRI 460
T A +G+G G V+R + G+ +AVK S R F E + N +
Sbjct: 5 TVARQVALVECVGKGRYGEVWRGLW-HGESVAVKIFSS----RDEQSWFRETEIYNTVLL 59
Query: 461 RHTNIAELVGFCSEQGHN-------ILIYDYYRNGSLHEFLH 495
RH NI +GF + + LI Y+ +GSL++FL
Sbjct: 60 RHDNI---LGFIASDMTSRNSSTQLWLITHYHEHGSLYDFLQ 98
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 99 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 151
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 152 CNIVRLRYF 160
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 58 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 110
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 111 CNIVRLRYF 119
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y + +AVK + + ++F E + ++H + L
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM---SVQAFLEEANLMKTLQHDKLVRLYAVV 76
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ +I ++ GSL +FL
Sbjct: 77 TKEEPIYIITEFMAKGSLLDFL 98
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 56 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFK--NRE-----LQIMRKLDH 108
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 109 CNIVRLRYF 117
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 412 LLGEGTIGRVYRAKYPDGKV-LAVKKI---DSSHFQRANSESFSEIVQNISRIRHTNIAE 467
+LG+GT G VY + +V +A+K+I DS + S+ E + ++H NI +
Sbjct: 29 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY-----SQPLHEEIALHKHLKHKNIVQ 83
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+G SE G + + GSL L
Sbjct: 84 YLGSFSENGFIKIFMEQVPGGSLSALLR 111
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 406 NFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNI-SRIRHT 463
+F G++LGEG+ V A+ + A+K ++ H + N + +++ SR+ H
Sbjct: 38 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 97
Query: 464 NIAELVGFCSEQGHNILI-YDYYRNGSLHEFLH 495
+L FC + + Y +NG L +++
Sbjct: 98 FFVKLY-FCFQDDEKLYFGLSYAKNGELLKYIR 129
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
L+ LDL+ L+ ELP LS+LKKL L N+F
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
LG G G V K G A+K I SS +NS + + V + ++ H NI +L
Sbjct: 12 LGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLYE 71
Query: 471 FCSEQGHNILIYDYYRNGSL 490
F ++ + L+ + YR G L
Sbjct: 72 FFEDKRNYYLVMEVYRGGEL 91
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 412 LLGEGTIGRVYRAKYPDGKV-LAVKKI---DSSHFQRANSESFSEIVQNISRIRHTNIAE 467
+LG+GT G VY + +V +A+K+I DS + S+ E + ++H NI +
Sbjct: 15 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRY-----SQPLHEEIALHKHLKHKNIVQ 69
Query: 468 LVGFCSEQGHNILIYDYYRNGSLHEFLH 495
+G SE G + + GSL L
Sbjct: 70 YLGSFSENGFIKIFMEQVPGGSLSALLR 97
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKID-SSHFQRANSESFSEIVQNISRIRHTNIAELVG 470
LG G G V K G A+K I SS +NS + + V + ++ H NI +L
Sbjct: 29 LGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDHPNIMKLYE 88
Query: 471 FCSEQGHNILIYDYYRNGSL 490
F ++ + L+ + YR G L
Sbjct: 89 FFEDKRNYYLVMEVYRGGEL 108
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 184 ASLSSLKKLYLQNNQFT--GSINVLGKLPLDELNVENNKFSGWVPEELKD 231
A+L+SL+ L Q+ GS+N+ + +D+LNV++ F P E ++
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 184 ASLSSLKKLYLQNNQFT--GSINVLGKLPLDELNVENNKFSGWVPEELKD 231
A+L+SL+ L Q+ GS+N+ + +D+LNV++ F P E ++
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 95 VSYLDVSNNNLKDSIP---YQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXX 151
+YLD+ N+LK S+P + +L L L N+ ++++ L Y
Sbjct: 30 TTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 152 XXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
+F K +L+ L L+ NQL F L+ LK L L NQ
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 116 NLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLETLDLSKNQL 175
+L +L+LS NQ ++++LK +F K +L+ L L +NQL
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 176 TGELPRSFASLSSLKKLYLQNNQF 199
F L+SL+ ++L +N +
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPW 160
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 405 ANFATGRLLGEGTIGRVYRAKYPD-GKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRH 462
++ +++G G+ G VY+AK D G+++A+KK+ F+ N E +Q + ++ H
Sbjct: 20 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFK--NRE-----LQIMRKLDH 72
Query: 463 TNIAELVGF 471
NI L F
Sbjct: 73 CNIVRLRYF 81
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%)
Query: 107 DSIPYQLPPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXXXXXXXXDMFQKNEKLE 166
+SIP L +K LDLS N+ + + + L+ D F LE
Sbjct: 18 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 167 TLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
LDLS N L+ F LSSL L L N +
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 183 FASLSSLKKLYLQNNQFTGSINVLGKLP-LDELNVENNKFSGWVP 226
L L+ LYL NN+ T I VL +L LD L++E+N+ VP
Sbjct: 128 LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIRRIVP 171
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSES-FSEIVQNISR 459
++ G LG GT G+V ++ G +AVK ++ + + +QN+
Sbjct: 8 VKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL 67
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH +I +L S ++ +Y G L +++
Sbjct: 68 FRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYI 102
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 402 TATANFATGRLLGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSES-FSEIVQNISR 459
++ G LG GT G+V ++ G +AVK ++ + + +QN+
Sbjct: 8 VKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL 67
Query: 460 IRHTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
RH +I +L S ++ +Y G L +++
Sbjct: 68 FRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYI 102
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 86
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 87 TQEPIYI-ITEYMENGSLVDFL 107
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 85
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 86 TQEPIYI-ITEYMENGSLVDFL 106
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 413 LGEGTIGRVYRAKYPD-GKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGF 471
LGEG+ G VY+A + + G+++A+K++ EI++ IS ++ + +V +
Sbjct: 37 LGEGSYGSVYKAIHKETGQIVAIKQVPV-------ESDLQEIIKEISIMQQCDSPHVVKY 89
Query: 472 CSEQGHNI---LIYDYYRNGSLHEFLH 495
N ++ +Y GS+ + +
Sbjct: 90 YGSYFKNTDLWIVMEYCGAGSVSDIIR 116
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 405 ANFATGRLLGEGTIGRVYRAK-YPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHT 463
ANF + +G G VYRA DG +A+KK+ F ++++ ++ ++ I ++
Sbjct: 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI--FDLMDAKARADCIKEIDLLKQL 89
Query: 464 NIAELVGF 471
N ++ +
Sbjct: 90 NHPNVIKY 97
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 83
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 84 TQEPIYI-ITEYMENGSLVDFL 104
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 87
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 88 TQEPIYI-ITEYMENGSLVDFL 108
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 79
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 80 TQEPIYI-ITEYMENGSLVDFL 100
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 409 TGRLLGEGTIGRVYRA-KYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAE 467
T LLGEG +V A +GK AVK I+ + S F E+ + NI E
Sbjct: 17 TSELLGEGAYAKVQGAVSLQNGKEYAVKIIEK-QAGHSRSRVFREVETLYQCQGNKNILE 75
Query: 468 LVGFCSEQGHNILIYDYYRNGSL 490
L+ F + L+++ + GS+
Sbjct: 76 LIEFFEDDTRFYLVFEKLQGGSI 98
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 78 TQEPIYI-ITEYMENGSLVDFL 98
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR-IR 461
+ FA R + G+ Y AK+ +KK S +R S E NI R IR
Sbjct: 21 GSGQFAIVRKCRQKGTGKEYAAKF-------IKKRRLSSSRRGVSREEIEREVNILREIR 73
Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
H NI L + +LI + G L +FL
Sbjct: 74 HPNIITLHDIFENKTDVVLILELVSGGELFDFL 106
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 78
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 79 TQEPIYI-ITEYMENGSLVDFL 99
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 83
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 84 TQEPIYI-ITEYMENGSLVDFL 104
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 78 TQEPIYI-ITEYMENGSLVDFL 98
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 78 TQEPIYI-ITEYMENGSLVDFL 98
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 82
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 83 TQEPIYI-ITEYMENGSLVDFL 103
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 403 ATANFATGRLLGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISR-IR 461
+ FA R + G+ Y AK+ +KK S +R S E NI R IR
Sbjct: 14 GSGQFAIVRKCRQKGTGKEYAAKF-------IKKRRLSSSRRGVSREEIEREVNILREIR 66
Query: 462 HTNIAELVGFCSEQGHNILIYDYYRNGSLHEFL 494
H NI L + +LI + G L +FL
Sbjct: 67 HPNIITLHDIFENKTDVVLILELVSGGELFDFL 99
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 77
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 78 TQEPIYI-ITEYMENGSLVDFL 98
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 73
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 74 TQEPIYI-ITEYMENGSLVDFL 94
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 413 LGEGTIGRVYRAKYPDGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIAELVGFC 472
LG G G V+ Y +AVK + + ++F + +++H + L
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVV 72
Query: 473 SEQGHNILIYDYYRNGSLHEFL 494
+++ I I +Y NGSL +FL
Sbjct: 73 TQEPIYI-ITEYMENGSLVDFL 93
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 395 FSMADLLTATANFATGRLLGEGTIGRVYRAKY-PDGKVLAVKKIDSSHFQRANSESFSEI 453
++ L F L+G GT G+VY+ ++ G++ A+K +D + EI
Sbjct: 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD------VTGDEEEEI 67
Query: 454 VQNISRIR----HTNIAELVG 470
Q I+ ++ H NIA G
Sbjct: 68 KQEINMLKKYSHHRNIATYYG 88
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+G G+ GR + + DGK+L K++D A + V + ++H NI
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV 68
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+G G+ GR + + DGK+L K++D A + V + ++H NI
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV 68
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 94 SVSYLDVSNNNLKDSIPYQL---PPNLKHLDLSENQFSGTVPYSISQMSELKYXXXXXXX 150
S + L++ +N L+ S+P+ + L L LS+NQ ++++L
Sbjct: 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 151 XXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSI 203
+F K +L+ L L NQL F L+SL+K++L N + S
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 413 LGEGTIGRVYRAKYP-DGKVLAVKKIDSSHFQRANSESFSEIVQNISRIRHTNIA 466
+G G+ GR + + DGK+L K++D A + V + ++H NI
Sbjct: 14 IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIV 68
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 407 FATGRLLGEGTIGRVYRAKYPDGKVLAVKKI-DSSHFQRANSESFSEIVQNISRIRHTNI 465
+ +++G G+ G V++AK + +A+KK+ F+ N E +Q + ++H N+
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK--NRE-----LQIMRIVKHPNV 94
Query: 466 AELVGFCSEQG 476
+L F G
Sbjct: 95 VDLKAFFYSNG 105
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 94 SVSYLDVSNNNLKDSIPYQLPPNLKHLDLSENQFS-GTVPYS--ISQMSELKYXXXXXXX 150
S LD SN +L + +L+HL+L N F G++ + + + L+
Sbjct: 432 SHCLLDTSNQHLLAGLQ-----DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Query: 151 XXXXXXDMFQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYL 194
F + LDLS N LTG+ S +LS LK LYL
Sbjct: 487 LLSIDQQAFHGLRNVNHLDLSHNSLTGD---SMDALSHLKGLYL 527
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNV 216
L +DLS N+L + F + L++LY+ NN+ +N+ G+ P+ L V
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKV 299
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQF 199
FQ +L+ LDL+ L G LP L+ LKKL L N F
Sbjct: 271 FQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 159 FQKNEKLETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFT 200
QK +KL L+ NQL G+LP +F S L L L NQ T
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-ISQMSELKY 143
L ++ N LKD NL LDL+ NQ S P S +++++ELK
Sbjct: 225 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 165 LETLDLSKNQLTGELPRSFASLSSLKKLYLQNNQFTGSINVLGKLPLDELNV 216
L +DLS N+L + F + L++LY+ NN+ +N+ G+ P+ L V
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQ-PIPTLKV 305
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-ISQMSELKY 143
L ++ N LKD NL LDL+ NQ S P S +++++ELK
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-ISQMSELKY 143
L ++ N LKD NL LDL+ NQ S P S +++++ELK
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 98 LDVSNNNLKDSIPYQLPPNLKHLDLSENQFSGTVPYS-ISQMSELKY 143
L ++ N LKD NL LDL+ NQ S P S +++++ELK
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,946,339
Number of Sequences: 62578
Number of extensions: 480041
Number of successful extensions: 2069
Number of sequences better than 100.0: 500
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 709
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)