BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040890
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QEJ|A Chain A, S74e-Dck Mutant In Complex With Udp
 pdb|3QEJ|B Chain B, S74e-Dck Mutant In Complex With Udp
 pdb|3QEN|A Chain A, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
 pdb|3QEN|B Chain B, S74e Dck In Complex With 5-Bromodeoxycytidine And Udp
          Length = 279

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E+ N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 152 DRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 211

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 212 GRNEEQGIPLEYLEKLHY 229


>pdb|2ZI4|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+adp
 pdb|2ZI5|A Chain A, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|B Chain B, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|C Chain C, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI5|D Chain D, C4s Dck Variant Of Dck In Complex With L-Da+udp
 pdb|2ZI6|A Chain A, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|B Chain B, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|C Chain C, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI6|D Chain D, C4s Dck Variant Of Dck In Complex With D-Da+udp
 pdb|2ZI7|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dg+udp
 pdb|2ZI7|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dg+udp
 pdb|2ZIA|A Chain A, C4s Dck Variant Of Dck In Complex With Cladribine+udp
 pdb|2ZIA|B Chain B, C4s Dck Variant Of Dck In Complex With Cladribine+udp
 pdb|3MJR|A Chain A, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|B Chain B, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|C Chain C, Human Dck Complex With Acyclic Nucleoside
 pdb|3MJR|D Chain D, Human Dck Complex With Acyclic Nucleoside
 pdb|3KFX|A Chain A, Human Dck Complex With 5-Me Dc And Adp
 pdb|3KFX|B Chain B, Human Dck Complex With 5-Me Dc And Adp
          Length = 279

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E+ N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 152 DRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 211

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 212 GRNEEQGIPLEYLEKLHY 229


>pdb|2NO9|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
           Troxacitabine And Adp.
 pdb|2NO9|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
           Troxacitabine And Adp.
 pdb|2NOA|A Chain A, The Structure Of Deoxycytidine Kinase Complexed With
           Lamivudine And Adp.
 pdb|2NOA|B Chain B, The Structure Of Deoxycytidine Kinase Complexed With
           Lamivudine And Adp.
 pdb|2NO0|A Chain A, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
 pdb|2NO0|B Chain B, C4s Dck Variant Of Dck In Complex With Gemcitabine+adp
 pdb|2NO1|A Chain A, C4s Dck Variant Of Dck In Complex With D-Dc+adp
 pdb|2NO1|B Chain B, C4s Dck Variant Of Dck In Complex With D-Dc+adp
 pdb|2NO6|A Chain A, C4s Dck Variant Of Dck In Complex With Ftc+adp
 pdb|2NO6|B Chain B, C4s Dck Variant Of Dck In Complex With Ftc+adp
 pdb|2NO7|A Chain A, C4s Dck Variant Of Dck In Complex With L-dc+adp
 pdb|2NO7|B Chain B, C4s Dck Variant Of Dck In Complex With L-dc+adp
          Length = 280

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E+ N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 153 DRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 212

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 213 GRNEEQGIPLEYLEKLHY 230


>pdb|3IPX|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With Adp And An Inhibitor
 pdb|3IPY|A Chain A, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With An Inhibitor
 pdb|3IPY|B Chain B, X-Ray Structure Of Human Deoxycytidine Kinase In Complex
           With An Inhibitor
          Length = 241

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E  N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 114 DRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 173

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 174 GRNEEQGIPLEYLEKLHY 191


>pdb|2ZI3|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
 pdb|2ZI3|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With D-Da+adp
 pdb|2ZI9|A Chain A, C4s-E247a Dck Variant Of Dck In Complex With
           Cladribine+adp
 pdb|2ZI9|B Chain B, C4s-E247a Dck Variant Of Dck In Complex With
           Cladribine+adp
          Length = 279

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E+ N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 152 DRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 211

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 212 GRNEEQGIPLEYLEKLHY 229


>pdb|2QRN|A Chain A, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
           Complex
 pdb|2QRN|B Chain B, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
           Complex
 pdb|2QRN|C Chain C, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
           Complex
 pdb|2QRN|D Chain D, Human Deoxycytidine Kinase Dcmp, Udp, Mg Ion Product
           Complex
 pdb|2QRO|A Chain A, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
           Complex
 pdb|2QRO|B Chain B, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
           Complex
 pdb|2QRO|C Chain C, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
           Complex
 pdb|2QRO|D Chain D, Human Deoxycytidine Kinase Damp, Udp, Mg Ion Product
           Complex
          Length = 280

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E  N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 153 DRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 212

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 213 GRNEEQGIPLEYLEKLHY 230


>pdb|1P5Z|B Chain B, Structure Of Human Dck Complexed With Cytarabine And
           Adp-Mg
 pdb|1P60|A Chain A, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
           Adp, Space Group C 2 2 21
 pdb|1P60|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
           Adp, Space Group C 2 2 21
 pdb|1P61|B Chain B, Structure Of Human Dck Complexed With 2'-Deoxycytidine And
           Adp, P 43 21 2 Space Group
 pdb|1P62|B Chain B, Structure Of Human Dck Complexed With Gemcitabine And
           Adp-Mg
 pdb|2A7Q|A Chain A, Crystal Structure Of Human Dck Complexed With Clofarabine
           And Adp
          Length = 263

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E  N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 136 DRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 195

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 196 GRNEEQGIPLEYLEKLHY 213


>pdb|2A2Z|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine And Uridine Diphosphate
 pdb|2A2Z|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine And Uridine Diphosphate
 pdb|2A2Z|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine And Uridine Diphosphate
 pdb|2A2Z|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine And Uridine Diphosphate
 pdb|2A30|A Chain A, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine
 pdb|2A30|B Chain B, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine
 pdb|2A30|C Chain C, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine
 pdb|2A30|D Chain D, Crystal Structure Of Human Deoxycytidine Kinase In Complex
           With Deoxycytidine
          Length = 248

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 88  DSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM-MPQSALREIMGK 146
           D Y F   ++ +E  N      Y   H W++      + LD I+ +   P++ L  I  +
Sbjct: 121 DRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLR 180

Query: 147 GFRQRKTALHDYLKNKRY 164
           G  + +    +YL+   Y
Sbjct: 181 GRNEEQGIPLEYLEKLHY 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,719,733
Number of Sequences: 62578
Number of extensions: 203798
Number of successful extensions: 551
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)