Query 040890
Match_columns 221
No_of_seqs 211 out of 1906
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-29 5.6E-34 236.1 19.0 194 17-218 105-316 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-28 5.5E-33 204.4 12.7 155 63-220 1-158 (287)
3 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.4E-27 198.2 18.4 155 55-220 181-352 (1153)
4 PRK00411 cdc6 cell division co 99.2 6.6E-10 1.4E-14 97.2 13.8 150 54-205 26-188 (394)
5 PF05729 NACHT: NACHT domain 99.1 3.3E-10 7.2E-15 86.6 9.8 129 82-220 1-151 (166)
6 TIGR02928 orc1/cdc6 family rep 99.1 3E-09 6.6E-14 92.1 13.7 116 56-173 13-140 (365)
7 TIGR03015 pepcterm_ATPase puta 99.0 4.3E-08 9.2E-13 81.3 16.5 94 81-181 43-144 (269)
8 PF13173 AAA_14: AAA domain 98.9 6.3E-09 1.4E-13 77.1 9.0 102 81-205 2-104 (128)
9 cd00009 AAA The AAA+ (ATPases 98.9 4.1E-08 8.8E-13 72.7 12.1 122 61-201 1-131 (151)
10 PF13401 AAA_22: AAA domain; P 98.9 8.9E-09 1.9E-13 75.9 8.3 112 80-199 3-125 (131)
11 PTZ00202 tuzin; Provisional 98.9 8E-08 1.7E-12 84.1 14.3 102 56-169 260-368 (550)
12 PF13191 AAA_16: AAA ATPase do 98.9 3.8E-09 8.3E-14 82.4 5.4 46 59-104 1-47 (185)
13 PF01637 Arch_ATPase: Archaeal 98.8 2.5E-08 5.3E-13 80.3 10.2 43 60-104 1-43 (234)
14 cd01128 rho_factor Transcripti 98.8 1.9E-08 4.1E-13 82.8 6.8 91 81-172 16-113 (249)
15 PRK04841 transcriptional regul 98.7 2.2E-07 4.8E-12 89.3 14.1 133 57-200 13-162 (903)
16 PRK09376 rho transcription ter 98.6 4.8E-08 1E-12 84.5 6.0 90 82-172 170-266 (416)
17 PRK06893 DNA replication initi 98.6 3.6E-07 7.8E-12 74.4 9.3 108 81-220 39-162 (229)
18 PRK05564 DNA polymerase III su 98.6 1.8E-06 4E-11 73.5 13.9 122 58-201 4-134 (313)
19 PRK13342 recombination factor 98.6 3.3E-07 7.1E-12 81.0 9.4 101 57-185 11-117 (413)
20 TIGR00635 ruvB Holliday juncti 98.5 2.5E-07 5.4E-12 78.3 7.8 135 58-204 4-144 (305)
21 TIGR02903 spore_lon_C ATP-depe 98.5 6.6E-07 1.4E-11 82.7 10.9 142 57-200 153-334 (615)
22 COG1474 CDC6 Cdc6-related prot 98.5 3.9E-06 8.5E-11 72.9 14.8 111 56-172 15-133 (366)
23 TIGR00767 rho transcription te 98.5 4E-07 8.8E-12 79.1 7.7 90 82-172 169-265 (415)
24 PRK07003 DNA polymerase III su 98.5 1.2E-06 2.6E-11 81.4 10.9 138 57-200 15-159 (830)
25 PRK12402 replication factor C 98.5 1.6E-06 3.6E-11 74.1 11.2 46 57-104 14-59 (337)
26 PRK14961 DNA polymerase III su 98.5 3.7E-06 8E-11 73.1 13.3 156 57-219 15-178 (363)
27 PRK14963 DNA polymerase III su 98.5 3.1E-07 6.8E-12 82.8 6.5 157 57-219 13-175 (504)
28 PRK04195 replication factor C 98.5 1.2E-06 2.6E-11 78.9 10.2 118 57-198 13-138 (482)
29 PTZ00112 origin recognition co 98.4 3.8E-06 8.3E-11 79.1 13.0 112 57-172 754-879 (1164)
30 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.7E-06 3.8E-11 69.8 9.2 40 63-104 22-61 (226)
31 PRK14960 DNA polymerase III su 98.4 3.3E-06 7.1E-11 77.7 11.4 136 57-199 14-157 (702)
32 PRK11331 5-methylcytosine-spec 98.4 2.2E-06 4.8E-11 75.6 9.9 105 57-172 174-282 (459)
33 COG2256 MGS1 ATPase related to 98.4 3E-06 6.5E-11 73.0 10.4 131 58-220 24-164 (436)
34 cd03214 ABC_Iron-Siderophores_ 98.4 6.8E-06 1.5E-10 64.3 11.6 131 80-217 24-172 (180)
35 PRK06645 DNA polymerase III su 98.4 5.9E-06 1.3E-10 74.5 12.4 149 57-219 20-187 (507)
36 PRK00080 ruvB Holliday junctio 98.4 1.7E-06 3.8E-11 74.1 8.6 49 56-104 23-74 (328)
37 KOG2543 Origin recognition com 98.3 3.5E-06 7.6E-11 72.2 9.7 113 57-174 5-127 (438)
38 PRK12323 DNA polymerase III su 98.3 7.1E-06 1.5E-10 75.4 12.3 46 57-103 15-60 (700)
39 PRK14962 DNA polymerase III su 98.3 1.1E-05 2.4E-10 72.3 13.3 47 57-104 13-59 (472)
40 COG1136 SalX ABC-type antimicr 98.3 1.2E-05 2.5E-10 65.0 12.1 132 80-217 30-216 (226)
41 PRK14949 DNA polymerase III su 98.3 7.5E-06 1.6E-10 77.5 12.3 151 57-219 15-178 (944)
42 PRK14956 DNA polymerase III su 98.3 6.2E-06 1.3E-10 73.5 11.1 154 57-219 17-180 (484)
43 COG2909 MalT ATP-dependent tra 98.3 1.3E-05 2.7E-10 74.8 13.2 137 57-201 18-171 (894)
44 PRK08116 hypothetical protein; 98.3 4.3E-06 9.4E-11 69.7 9.3 102 82-200 115-221 (268)
45 PRK00440 rfc replication facto 98.3 9.9E-06 2.2E-10 68.7 11.7 46 57-104 16-61 (319)
46 PRK08691 DNA polymerase III su 98.3 6.6E-06 1.4E-10 76.2 11.1 46 57-103 15-60 (709)
47 PHA02544 44 clamp loader, smal 98.3 8.9E-06 1.9E-10 69.1 11.3 47 57-104 20-66 (316)
48 PRK13341 recombination factor 98.3 4.5E-06 9.7E-11 78.3 10.1 45 57-103 27-74 (725)
49 COG1120 FepC ABC-type cobalami 98.3 7.4E-06 1.6E-10 67.5 10.2 127 80-207 27-206 (258)
50 PRK14957 DNA polymerase III su 98.3 1E-05 2.2E-10 73.6 12.0 149 57-219 15-178 (546)
51 PRK10536 hypothetical protein; 98.3 3.6E-05 7.9E-10 63.3 14.2 137 57-202 54-215 (262)
52 TIGR01242 26Sp45 26S proteasom 98.3 3.3E-06 7.2E-11 73.4 8.5 47 58-104 122-179 (364)
53 PLN03025 replication factor C 98.3 9.1E-06 2E-10 69.4 10.9 122 57-199 12-138 (319)
54 PRK14955 DNA polymerase III su 98.3 1.6E-05 3.4E-10 70.0 12.7 46 57-103 15-60 (397)
55 PRK14969 DNA polymerase III su 98.3 1.9E-05 4.2E-10 71.8 13.4 46 57-103 15-60 (527)
56 PRK08727 hypothetical protein; 98.3 9.6E-06 2.1E-10 66.2 10.3 24 81-104 41-64 (233)
57 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.1E-05 2.4E-10 66.1 10.5 125 81-207 30-206 (254)
58 smart00382 AAA ATPases associa 98.3 1.2E-05 2.7E-10 58.6 9.9 24 81-104 2-25 (148)
59 PRK09087 hypothetical protein; 98.2 2.2E-05 4.7E-10 63.8 11.9 24 81-104 44-67 (226)
60 PF05496 RuvB_N: Holliday junc 98.2 9.2E-06 2E-10 65.4 9.2 54 56-111 22-78 (233)
61 COG4608 AppF ABC-type oligopep 98.2 1.4E-05 3.1E-10 65.8 10.3 124 80-208 38-178 (268)
62 PRK05896 DNA polymerase III su 98.2 1.3E-05 2.7E-10 73.4 10.9 46 57-103 15-60 (605)
63 cd03216 ABC_Carb_Monos_I This 98.2 1.2E-05 2.6E-10 62.0 9.3 123 81-217 26-156 (163)
64 PRK14958 DNA polymerase III su 98.2 2.8E-05 6.1E-10 70.4 12.9 137 57-199 15-158 (509)
65 cd03238 ABC_UvrA The excision 98.2 1.9E-05 4.1E-10 61.7 10.3 125 80-217 20-162 (176)
66 PF00004 AAA: ATPase family as 98.2 1.9E-05 4.2E-10 57.8 9.9 21 84-104 1-21 (132)
67 PRK14951 DNA polymerase III su 98.2 2.8E-05 6.1E-10 71.7 12.7 46 57-103 15-60 (618)
68 COG1126 GlnQ ABC-type polar am 98.2 4E-05 8.7E-10 61.2 11.7 130 80-216 27-209 (240)
69 TIGR02397 dnaX_nterm DNA polym 98.2 5E-05 1.1E-09 65.5 13.3 46 57-103 13-58 (355)
70 COG2884 FtsE Predicted ATPase 98.2 5.3E-05 1.2E-09 59.4 11.8 123 80-207 27-204 (223)
71 COG1373 Predicted ATPase (AAA+ 98.2 3.1E-05 6.7E-10 68.1 11.7 98 83-206 39-137 (398)
72 PRK07994 DNA polymerase III su 98.1 2.2E-05 4.8E-10 72.6 11.1 155 57-219 15-178 (647)
73 PRK12377 putative replication 98.1 5.9E-05 1.3E-09 62.1 12.4 73 81-172 101-173 (248)
74 PRK07764 DNA polymerase III su 98.1 5.2E-05 1.1E-09 72.2 13.4 153 57-219 14-179 (824)
75 cd03230 ABC_DR_subfamily_A Thi 98.1 3.3E-05 7.2E-10 60.0 10.2 129 81-217 26-169 (173)
76 TIGR02858 spore_III_AA stage I 98.1 7.4E-05 1.6E-09 62.3 12.8 134 66-206 97-235 (270)
77 PRK14970 DNA polymerase III su 98.1 5.7E-05 1.2E-09 65.7 12.7 46 57-103 16-61 (367)
78 TIGR00678 holB DNA polymerase 98.1 9.8E-05 2.1E-09 58.1 12.9 58 161-219 95-155 (188)
79 cd03247 ABCC_cytochrome_bd The 98.1 3.9E-05 8.4E-10 59.8 10.6 127 81-217 28-170 (178)
80 PRK14964 DNA polymerase III su 98.1 3.3E-05 7.2E-10 69.4 11.4 155 57-218 12-174 (491)
81 PRK14954 DNA polymerase III su 98.1 5.5E-05 1.2E-09 69.9 13.0 46 57-103 15-60 (620)
82 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 6.1E-05 1.3E-09 56.8 11.1 112 81-217 26-141 (144)
83 cd03235 ABC_Metallic_Cations A 98.1 4.7E-05 1E-09 61.0 11.0 62 153-217 141-206 (213)
84 PF04665 Pox_A32: Poxvirus A32 98.1 9.6E-06 2.1E-10 66.2 7.0 34 82-117 14-47 (241)
85 PRK08084 DNA replication initi 98.1 2.9E-05 6.2E-10 63.5 9.8 24 81-104 45-68 (235)
86 PRK07940 DNA polymerase III su 98.1 7.3E-05 1.6E-09 65.6 12.7 46 58-103 5-58 (394)
87 PF05673 DUF815: Protein of un 98.1 5.1E-05 1.1E-09 61.9 10.8 117 56-202 25-153 (249)
88 cd03269 ABC_putative_ATPase Th 98.1 6.3E-05 1.4E-09 60.1 11.1 61 154-217 138-202 (210)
89 KOG2028 ATPase related to the 98.1 1.8E-05 4E-10 67.7 8.2 95 80-200 161-261 (554)
90 cd03263 ABC_subfamily_A The AB 98.1 6.7E-05 1.4E-09 60.4 11.2 55 153-207 142-199 (220)
91 cd01131 PilT Pilus retraction 98.1 1.1E-05 2.4E-10 64.2 6.6 111 82-205 2-114 (198)
92 PRK09111 DNA polymerase III su 98.1 7.2E-05 1.6E-09 68.9 12.5 47 57-104 23-69 (598)
93 cd03228 ABCC_MRP_Like The MRP 98.0 6.2E-05 1.3E-09 58.3 10.4 127 80-217 27-168 (171)
94 cd03222 ABC_RNaseL_inhibitor T 98.0 6.2E-05 1.3E-09 58.9 10.3 102 81-207 25-139 (177)
95 PF00308 Bac_DnaA: Bacterial d 98.0 2.8E-05 6.1E-10 62.9 8.6 111 69-199 21-139 (219)
96 cd03264 ABC_drug_resistance_li 98.0 9E-05 2E-09 59.3 11.5 64 151-217 137-203 (211)
97 cd03223 ABCD_peroxisomal_ALDP 98.0 0.00015 3.2E-09 56.0 12.2 125 80-217 26-161 (166)
98 cd03259 ABC_Carb_Solutes_like 98.0 8E-05 1.7E-09 59.7 11.1 62 153-217 139-205 (213)
99 cd03226 ABC_cobalt_CbiO_domain 98.0 9.7E-05 2.1E-09 58.9 11.5 133 81-217 26-200 (205)
100 PRK14952 DNA polymerase III su 98.0 0.00011 2.5E-09 67.4 13.2 156 57-219 12-177 (584)
101 PRK08181 transposase; Validate 98.0 9.4E-06 2E-10 67.6 5.5 71 82-172 107-177 (269)
102 TIGR03522 GldA_ABC_ATP gliding 98.0 0.00013 2.8E-09 61.8 12.6 25 80-104 27-51 (301)
103 cd03266 ABC_NatA_sodium_export 98.0 8.3E-05 1.8E-09 59.7 10.9 24 81-104 31-54 (218)
104 PRK03992 proteasome-activating 98.0 8.3E-05 1.8E-09 65.3 11.6 47 58-104 131-188 (389)
105 PRK14950 DNA polymerase III su 98.0 5.7E-05 1.2E-09 69.7 11.1 137 57-198 15-158 (585)
106 cd03246 ABCC_Protease_Secretio 98.0 5.1E-05 1.1E-09 59.0 9.2 125 81-217 28-169 (173)
107 cd03229 ABC_Class3 This class 98.0 3.6E-05 7.8E-10 60.1 8.3 132 80-217 25-175 (178)
108 TIGR00960 3a0501s02 Type II (G 98.0 0.00012 2.6E-09 58.7 11.6 63 152-217 146-212 (216)
109 cd03237 ABC_RNaseL_inhibitor_d 98.0 0.00011 2.5E-09 60.4 11.5 133 81-216 25-189 (246)
110 CHL00181 cbbX CbbX; Provisiona 98.0 0.0002 4.3E-09 60.3 13.1 22 82-103 60-81 (287)
111 TIGR02881 spore_V_K stage V sp 98.0 6.2E-05 1.3E-09 62.4 9.8 24 80-103 41-64 (261)
112 PRK07952 DNA replication prote 98.0 0.00023 4.9E-09 58.5 12.9 114 67-198 85-203 (244)
113 TIGR01188 drrA daunorubicin re 98.0 0.00015 3.3E-09 61.4 12.3 53 152-207 132-191 (302)
114 TIGR02639 ClpA ATP-dependent C 98.0 7E-05 1.5E-09 70.8 11.2 45 58-104 182-226 (731)
115 cd03225 ABC_cobalt_CbiO_domain 98.0 0.00011 2.4E-09 58.7 10.9 62 153-217 143-208 (211)
116 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.0 0.00016 3.4E-09 58.6 11.8 58 154-217 152-216 (224)
117 PRK13537 nodulation ABC transp 98.0 0.00015 3.2E-09 61.6 12.1 52 153-207 147-205 (306)
118 PRK09544 znuC high-affinity zi 98.0 0.00013 2.9E-09 60.2 11.4 133 80-216 29-194 (251)
119 TIGR03740 galliderm_ABC gallid 98.0 0.00012 2.6E-09 59.1 10.9 54 154-207 134-191 (223)
120 cd03265 ABC_DrrA DrrA is the A 98.0 0.00014 3.1E-09 58.6 11.3 24 81-104 26-49 (220)
121 cd03258 ABC_MetN_methionine_tr 98.0 0.00011 2.4E-09 59.7 10.8 62 152-216 148-214 (233)
122 COG1124 DppF ABC-type dipeptid 98.0 0.00018 3.8E-09 58.4 11.5 126 80-208 32-210 (252)
123 cd03293 ABC_NrtD_SsuB_transpor 98.0 0.00016 3.4E-09 58.3 11.5 24 81-104 30-53 (220)
124 cd03215 ABC_Carb_Monos_II This 98.0 9.4E-05 2E-09 57.9 9.9 122 81-217 26-178 (182)
125 PRK07471 DNA polymerase III su 98.0 0.00028 6E-09 61.4 13.6 47 56-103 17-63 (365)
126 PRK11248 tauB taurine transpor 97.9 0.00019 4.2E-09 59.3 12.1 61 153-216 137-202 (255)
127 PHA00729 NTP-binding motif con 97.9 9.2E-05 2E-09 59.9 9.8 32 70-103 8-39 (226)
128 PRK08118 topology modulation p 97.9 1.2E-05 2.6E-10 62.3 4.5 35 83-117 3-38 (167)
129 PRK08903 DnaA regulatory inact 97.9 7.2E-05 1.6E-09 60.6 9.3 46 58-104 18-65 (227)
130 PRK13543 cytochrome c biogenes 97.9 0.0002 4.4E-09 57.5 11.7 134 80-216 36-210 (214)
131 cd03268 ABC_BcrA_bacitracin_re 97.9 0.00016 3.4E-09 57.7 11.0 60 154-216 136-199 (208)
132 cd03301 ABC_MalK_N The N-termi 97.9 0.00015 3.2E-09 58.1 10.9 24 81-104 26-49 (213)
133 PRK12608 transcription termina 97.9 3.8E-05 8.2E-10 66.5 7.7 101 69-172 122-230 (380)
134 PRK14088 dnaA chromosomal repl 97.9 0.00012 2.7E-09 65.2 11.3 97 81-198 130-235 (440)
135 PRK05642 DNA replication initi 97.9 8E-05 1.7E-09 60.8 9.3 23 81-103 45-67 (234)
136 PRK13540 cytochrome c biogenes 97.9 0.00016 3.6E-09 57.4 10.9 128 80-207 26-194 (200)
137 cd03224 ABC_TM1139_LivF_branch 97.9 0.00019 4.2E-09 57.7 11.3 54 154-207 142-199 (222)
138 cd03261 ABC_Org_Solvent_Resist 97.9 0.00018 3.9E-09 58.5 11.2 61 153-216 145-210 (235)
139 TIGR03771 anch_rpt_ABC anchore 97.9 0.00031 6.6E-09 56.8 12.4 56 152-207 121-180 (223)
140 PRK13538 cytochrome c biogenes 97.9 0.00019 4E-09 57.2 11.0 62 152-216 137-202 (204)
141 TIGR01277 thiQ thiamine ABC tr 97.9 0.00019 4E-09 57.6 11.0 62 153-217 137-203 (213)
142 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 0.00018 3.9E-09 57.8 10.9 61 153-217 149-214 (218)
143 TIGR03864 PQQ_ABC_ATP ABC tran 97.9 0.00018 3.8E-09 58.7 11.0 59 154-216 142-205 (236)
144 TIGR02880 cbbX_cfxQ probable R 97.9 0.00031 6.6E-09 59.1 12.6 21 83-103 60-80 (284)
145 cd03297 ABC_ModC_molybdenum_tr 97.9 0.00022 4.7E-09 57.2 11.3 62 152-216 139-205 (214)
146 cd03218 ABC_YhbG The ABC trans 97.9 0.00019 4E-09 58.3 11.0 24 81-104 26-49 (232)
147 TIGR03411 urea_trans_UrtD urea 97.9 0.00029 6.4E-09 57.5 12.2 62 152-216 151-215 (242)
148 cd03267 ABC_NatA_like Similar 97.9 0.00018 3.8E-09 58.7 10.8 61 153-216 162-227 (236)
149 PRK10865 protein disaggregatio 97.9 5.9E-05 1.3E-09 72.4 9.1 45 57-103 177-221 (857)
150 CHL00095 clpC Clp protease ATP 97.9 4.9E-05 1.1E-09 72.8 8.6 44 58-103 179-222 (821)
151 TIGR02314 ABC_MetN D-methionin 97.9 0.00017 3.8E-09 62.2 11.2 57 151-207 147-208 (343)
152 PRK09183 transposase/IS protei 97.9 4.8E-05 1E-09 63.1 7.5 23 81-103 102-124 (259)
153 TIGR02673 FtsE cell division A 97.9 0.00021 4.5E-09 57.3 11.0 63 152-217 145-211 (214)
154 PRK14250 phosphate ABC transpo 97.9 0.00021 4.5E-09 58.5 11.2 55 153-207 140-199 (241)
155 PRK14953 DNA polymerase III su 97.9 0.00037 7.9E-09 62.9 13.6 46 57-103 15-60 (486)
156 PRK14971 DNA polymerase III su 97.9 0.00026 5.6E-09 65.6 12.9 46 57-103 16-61 (614)
157 PRK11247 ssuB aliphatic sulfon 97.9 0.00021 4.7E-09 59.1 11.3 127 80-207 37-201 (257)
158 PRK14959 DNA polymerase III su 97.9 0.00017 3.6E-09 66.5 11.5 141 57-203 15-163 (624)
159 PRK14087 dnaA chromosomal repl 97.9 9.7E-05 2.1E-09 66.0 9.7 102 81-198 141-247 (450)
160 PRK11153 metN DL-methionine tr 97.9 0.00019 4E-09 62.0 11.2 56 152-207 148-208 (343)
161 PRK06835 DNA replication prote 97.9 7.6E-05 1.6E-09 64.0 8.6 23 82-104 184-206 (329)
162 cd03295 ABC_OpuCA_Osmoprotecti 97.9 0.00023 4.9E-09 58.2 11.1 24 81-104 27-50 (242)
163 TIGR02315 ABC_phnC phosphonate 97.9 0.00018 3.8E-09 58.8 10.5 24 81-104 28-51 (243)
164 cd03278 ABC_SMC_barmotin Barmo 97.9 0.00036 7.7E-09 55.5 11.8 20 83-102 24-43 (197)
165 PRK10908 cell division protein 97.9 0.00023 5.1E-09 57.4 11.0 62 153-217 146-211 (222)
166 cd03292 ABC_FtsE_transporter F 97.9 0.0002 4.2E-09 57.4 10.4 62 153-217 145-210 (214)
167 PRK06305 DNA polymerase III su 97.9 0.0004 8.7E-09 62.1 13.3 46 57-103 16-61 (451)
168 PRK00149 dnaA chromosomal repl 97.9 9.4E-05 2E-09 66.1 9.4 73 80-172 147-221 (450)
169 PRK06526 transposase; Provisio 97.9 2.3E-05 5.1E-10 64.8 5.1 24 81-104 98-121 (254)
170 TIGR00968 3a0106s01 sulfate AB 97.9 0.00021 4.6E-09 58.3 10.7 61 153-216 139-204 (237)
171 cd03219 ABC_Mj1267_LivG_branch 97.8 0.00031 6.8E-09 57.1 11.6 61 153-216 152-216 (236)
172 PTZ00454 26S protease regulato 97.8 0.00023 4.9E-09 62.6 11.4 46 59-104 146-202 (398)
173 cd03281 ABC_MSH5_euk MutS5 hom 97.8 2.6E-05 5.7E-10 62.8 5.1 123 81-207 29-161 (213)
174 cd03300 ABC_PotA_N PotA is an 97.8 0.00025 5.5E-09 57.6 10.9 56 152-207 138-198 (232)
175 PRK10771 thiQ thiamine transpo 97.8 0.00024 5.3E-09 57.7 10.8 61 153-216 138-203 (232)
176 cd03282 ABC_MSH4_euk MutS4 hom 97.8 2.7E-05 5.9E-10 62.3 5.1 120 81-208 29-159 (204)
177 PF13671 AAA_33: AAA domain; P 97.8 4.1E-05 8.8E-10 57.1 5.8 21 83-103 1-21 (143)
178 cd03244 ABCC_MRP_domain2 Domai 97.8 0.00035 7.7E-09 56.2 11.6 61 153-217 148-211 (221)
179 PRK13647 cbiO cobalt transport 97.8 0.00023 5E-09 59.5 10.8 58 150-207 144-205 (274)
180 PRK14965 DNA polymerase III su 97.8 0.00036 7.8E-09 64.3 13.0 46 57-103 15-60 (576)
181 PRK04296 thymidine kinase; Pro 97.8 5.5E-05 1.2E-09 59.8 6.7 112 82-201 3-117 (190)
182 TIGR01184 ntrCD nitrate transp 97.8 0.00025 5.4E-09 57.6 10.7 24 81-104 11-34 (230)
183 cd03213 ABCG_EPDR ABCG transpo 97.8 0.00027 5.9E-09 55.9 10.6 120 80-206 34-178 (194)
184 cd03231 ABC_CcmA_heme_exporter 97.8 0.00037 8E-09 55.4 11.5 133 80-216 25-198 (201)
185 cd03236 ABC_RNaseL_inhibitor_d 97.8 0.00023 5E-09 58.9 10.6 25 80-104 25-49 (255)
186 PRK09493 glnQ glutamine ABC tr 97.8 0.00036 7.7E-09 57.0 11.6 24 81-104 27-50 (240)
187 PRK11000 maltose/maltodextrin 97.8 0.00024 5.3E-09 61.9 11.0 62 152-216 141-207 (369)
188 PRK06921 hypothetical protein; 97.8 8.4E-05 1.8E-09 61.9 7.8 24 81-104 117-140 (266)
189 TIGR00362 DnaA chromosomal rep 97.8 0.00012 2.6E-09 64.5 9.2 72 81-172 136-209 (405)
190 PRK13539 cytochrome c biogenes 97.8 0.00034 7.3E-09 55.9 11.0 62 153-219 136-201 (207)
191 cd03294 ABC_Pro_Gly_Bertaine T 97.8 0.00039 8.4E-09 57.9 11.8 55 153-207 169-228 (269)
192 PRK13536 nodulation factor exp 97.8 0.00039 8.4E-09 60.0 12.1 53 152-207 180-239 (340)
193 cd03298 ABC_ThiQ_thiamine_tran 97.8 0.00029 6.4E-09 56.3 10.7 61 153-216 137-202 (211)
194 cd03296 ABC_CysA_sulfate_impor 97.8 0.00038 8.1E-09 56.8 11.5 25 80-104 27-51 (239)
195 cd03256 ABC_PhnC_transporter A 97.8 0.00029 6.3E-09 57.4 10.8 61 153-216 153-218 (241)
196 PRK11124 artP arginine transpo 97.8 0.00035 7.5E-09 57.1 11.3 55 153-207 150-208 (242)
197 TIGR01288 nodI ATP-binding ABC 97.8 0.00039 8.3E-09 59.0 11.9 51 154-207 145-202 (303)
198 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.00016 3.4E-09 55.2 8.7 125 81-217 25-154 (157)
199 cd03232 ABC_PDR_domain2 The pl 97.8 0.00028 6.1E-09 55.7 10.3 128 81-217 33-183 (192)
200 PRK14086 dnaA chromosomal repl 97.8 6.9E-05 1.5E-09 68.7 7.7 97 81-199 314-419 (617)
201 TIGR03689 pup_AAA proteasome A 97.8 0.0002 4.3E-09 64.7 10.4 48 57-104 181-239 (512)
202 PRK13650 cbiO cobalt transport 97.8 0.0003 6.6E-09 58.9 11.0 55 151-205 147-206 (279)
203 cd03262 ABC_HisP_GlnQ_permease 97.8 0.00043 9.2E-09 55.4 11.4 62 153-217 144-209 (213)
204 PRK14948 DNA polymerase III su 97.8 0.00049 1.1E-08 63.8 13.1 47 57-104 15-61 (620)
205 COG0396 sufC Cysteine desulfur 97.8 0.00032 6.9E-09 56.6 10.3 60 153-216 153-218 (251)
206 PRK12422 chromosomal replicati 97.8 0.00021 4.6E-09 63.7 10.3 99 81-199 141-244 (445)
207 COG1116 TauB ABC-type nitrate/ 97.8 0.00042 9.1E-09 56.5 11.0 132 80-217 28-205 (248)
208 PRK08451 DNA polymerase III su 97.8 0.00062 1.3E-08 61.9 13.3 46 57-103 13-58 (535)
209 cd03217 ABC_FeS_Assembly ABC-t 97.8 0.00027 6E-09 56.1 10.0 119 80-205 25-169 (200)
210 PRK11264 putative amino-acid A 97.8 0.00055 1.2E-08 56.2 11.9 24 81-104 29-52 (250)
211 PF01695 IstB_IS21: IstB-like 97.8 9E-06 2E-10 63.7 1.2 24 81-104 47-70 (178)
212 PRK13640 cbiO cobalt transport 97.8 0.00034 7.4E-09 58.7 10.8 61 152-216 151-216 (282)
213 COG1131 CcmA ABC-type multidru 97.8 0.00057 1.2E-08 57.7 12.1 125 81-207 31-204 (293)
214 PRK11300 livG leucine/isoleuci 97.8 0.00046 1E-08 56.8 11.4 56 152-207 161-221 (255)
215 PRK15064 ABC transporter ATP-b 97.8 0.00059 1.3E-08 62.3 13.1 54 152-207 163-219 (530)
216 PRK10247 putative ABC transpor 97.8 0.00037 8E-09 56.4 10.6 61 152-216 145-210 (225)
217 PRK10895 lipopolysaccharide AB 97.8 0.00033 7.2E-09 57.2 10.4 25 80-104 28-52 (241)
218 TIGR03258 PhnT 2-aminoethylpho 97.8 0.00042 9.1E-09 60.3 11.5 62 152-216 145-212 (362)
219 PRK10865 protein disaggregatio 97.7 0.00034 7.3E-09 67.3 11.7 47 57-103 567-620 (857)
220 PRK11650 ugpC glycerol-3-phosp 97.7 0.00041 8.9E-09 60.2 11.3 58 150-207 140-202 (356)
221 PRK06620 hypothetical protein; 97.7 0.00028 6.1E-09 56.9 9.6 23 82-104 45-67 (214)
222 PRK13648 cbiO cobalt transport 97.7 0.00047 1E-08 57.4 11.2 25 80-104 34-58 (269)
223 PRK09112 DNA polymerase III su 97.7 0.00041 8.9E-09 60.1 11.1 47 56-103 21-67 (351)
224 TIGR02237 recomb_radB DNA repa 97.7 0.00017 3.7E-09 57.5 8.2 91 79-172 10-107 (209)
225 TIGR00972 3a0107s01c2 phosphat 97.7 0.0007 1.5E-08 55.5 12.0 24 80-103 26-49 (247)
226 PRK07133 DNA polymerase III su 97.7 0.00059 1.3E-08 63.9 12.7 149 57-219 17-177 (725)
227 PRK05563 DNA polymerase III su 97.7 0.00054 1.2E-08 62.9 12.3 46 57-103 15-60 (559)
228 PRK13545 tagH teichoic acids e 97.7 0.00057 1.2E-08 61.9 12.2 124 81-207 50-210 (549)
229 PRK14247 phosphate ABC transpo 97.7 0.00077 1.7E-08 55.3 12.2 62 152-216 154-218 (250)
230 PRK09452 potA putrescine/sperm 97.7 0.00045 9.8E-09 60.3 11.3 62 152-216 152-218 (375)
231 PRK13639 cbiO cobalt transport 97.7 0.00043 9.4E-09 57.8 10.8 56 152-207 145-204 (275)
232 PRK11701 phnK phosphonate C-P 97.7 0.00046 9.9E-09 57.0 10.8 62 152-216 159-225 (258)
233 PRK13695 putative NTPase; Prov 97.7 4.8E-05 1E-09 59.1 4.7 34 83-117 2-35 (174)
234 PRK11144 modC molybdate transp 97.7 0.00047 1E-08 59.8 11.2 132 81-216 24-202 (352)
235 PRK13638 cbiO cobalt transport 97.7 0.0006 1.3E-08 56.8 11.5 55 153-207 145-203 (271)
236 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00018 3.9E-09 69.1 9.3 47 57-103 565-618 (852)
237 TIGR03005 ectoine_ehuA ectoine 97.7 0.00051 1.1E-08 56.5 10.9 24 81-104 26-49 (252)
238 COG0488 Uup ATPase components 97.7 0.00035 7.5E-09 63.6 10.7 66 147-217 156-224 (530)
239 PRK09361 radB DNA repair and r 97.7 0.00024 5.1E-09 57.5 8.8 91 79-172 21-117 (225)
240 PRK11432 fbpC ferric transport 97.7 0.0005 1.1E-08 59.6 11.2 62 152-216 144-210 (351)
241 cd01133 F1-ATPase_beta F1 ATP 97.7 8.5E-05 1.8E-09 61.8 6.2 90 81-172 69-173 (274)
242 TIGR02324 CP_lyasePhnL phospho 97.7 0.0011 2.4E-08 53.5 12.7 61 153-216 158-222 (224)
243 PF13177 DNA_pol3_delta2: DNA 97.7 0.001 2.2E-08 51.2 11.8 118 62-201 1-143 (162)
244 PRK13409 putative ATPase RIL; 97.7 0.00046 1E-08 63.8 11.6 133 80-216 364-527 (590)
245 COG0470 HolB ATPase involved i 97.7 0.00085 1.8E-08 56.9 12.5 120 59-198 2-147 (325)
246 TIGR03608 L_ocin_972_ABC putat 97.7 0.00052 1.1E-08 54.6 10.6 54 152-205 142-199 (206)
247 TIGR03410 urea_trans_UrtE urea 97.7 0.00047 1E-08 55.8 10.5 25 80-104 25-49 (230)
248 PRK08939 primosomal protein Dn 97.7 0.00025 5.5E-09 60.2 9.2 124 63-206 136-269 (306)
249 PRK11607 potG putrescine trans 97.7 0.00068 1.5E-08 59.3 12.1 62 150-216 155-223 (377)
250 PRK15439 autoinducer 2 ABC tra 97.7 0.00055 1.2E-08 62.2 11.9 132 80-216 36-213 (510)
251 PRK06696 uridine kinase; Valid 97.7 5.7E-05 1.2E-09 61.2 5.0 41 63-103 3-44 (223)
252 COG1127 Ttg2A ABC-type transpo 97.7 0.0012 2.6E-08 53.6 12.4 63 150-216 151-219 (263)
253 PRK10575 iron-hydroxamate tran 97.7 0.00054 1.2E-08 56.9 10.9 57 151-207 154-215 (265)
254 smart00763 AAA_PrkA PrkA AAA d 97.7 3.6E-05 7.7E-10 66.3 3.9 48 57-104 50-101 (361)
255 TIGR03873 F420-0_ABC_ATP propo 97.7 0.00065 1.4E-08 56.1 11.4 62 152-216 145-210 (256)
256 PF13207 AAA_17: AAA domain; P 97.7 2.9E-05 6.3E-10 56.3 2.9 21 83-103 1-21 (121)
257 PRK13652 cbiO cobalt transport 97.7 0.00059 1.3E-08 57.1 11.2 58 150-207 143-205 (277)
258 TIGR02770 nickel_nikD nickel i 97.7 0.00082 1.8E-08 54.5 11.7 24 81-104 12-35 (230)
259 PRK11831 putative ABC transpor 97.7 0.00055 1.2E-08 57.0 10.9 24 81-104 33-56 (269)
260 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00023 5E-09 68.5 9.7 44 58-103 173-216 (852)
261 PRK13546 teichoic acids export 97.7 0.0011 2.3E-08 55.2 12.5 54 154-207 153-210 (264)
262 PRK06067 flagellar accessory p 97.7 0.00061 1.3E-08 55.5 10.9 99 71-172 15-130 (234)
263 PRK13636 cbiO cobalt transport 97.7 0.00055 1.2E-08 57.4 10.9 56 152-207 149-209 (283)
264 TIGR02142 modC_ABC molybdenum 97.7 0.00063 1.4E-08 59.0 11.5 24 81-104 23-46 (354)
265 PRK10584 putative ABC transpor 97.7 0.00083 1.8E-08 54.3 11.5 25 80-104 35-59 (228)
266 TIGR03265 PhnT2 putative 2-ami 97.7 0.00059 1.3E-08 59.2 11.2 126 81-207 30-202 (353)
267 cd01120 RecA-like_NTPases RecA 97.7 0.00018 3.8E-09 54.3 7.1 38 83-122 1-38 (165)
268 cd01393 recA_like RecA is a b 97.7 0.00057 1.2E-08 55.1 10.5 93 79-172 17-124 (226)
269 PRK10619 histidine/lysine/argi 97.7 0.00096 2.1E-08 55.1 12.0 56 152-207 160-219 (257)
270 PF02562 PhoH: PhoH-like prote 97.7 7.9E-05 1.7E-09 59.5 5.3 53 61-117 3-55 (205)
271 PRK06647 DNA polymerase III su 97.7 0.00079 1.7E-08 61.8 12.4 134 57-199 15-158 (563)
272 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.0004 8.7E-09 56.3 9.6 93 79-172 17-125 (235)
273 PRK10636 putative ABC transpor 97.7 0.00095 2.1E-08 62.3 13.2 62 151-217 156-220 (638)
274 PRK10419 nikE nickel transport 97.7 0.00077 1.7E-08 56.1 11.4 58 150-207 157-219 (268)
275 PRK11614 livF leucine/isoleuci 97.7 0.00054 1.2E-08 55.8 10.3 24 81-104 31-54 (237)
276 PRK10851 sulfate/thiosulfate t 97.7 0.00064 1.4E-08 58.9 11.2 63 151-216 143-210 (353)
277 TIGR02639 ClpA ATP-dependent C 97.7 0.00053 1.2E-08 65.0 11.6 47 57-103 453-506 (731)
278 cd03243 ABC_MutS_homologs The 97.7 3.9E-05 8.6E-10 61.1 3.5 45 161-207 107-158 (202)
279 PRK13548 hmuV hemin importer A 97.7 0.00071 1.5E-08 56.0 11.1 24 81-104 28-51 (258)
280 PRK10982 galactose/methyl gala 97.7 0.00074 1.6E-08 61.0 12.0 63 149-216 396-464 (491)
281 PRK10253 iron-enterobactin tra 97.7 0.00058 1.3E-08 56.7 10.5 56 152-207 151-211 (265)
282 PRK11629 lolD lipoprotein tran 97.7 0.00088 1.9E-08 54.5 11.3 54 153-206 154-212 (233)
283 TIGR00602 rad24 checkpoint pro 97.6 0.00024 5.3E-09 65.8 8.8 48 57-104 83-133 (637)
284 PRK11308 dppF dipeptide transp 97.6 0.00066 1.4E-08 58.2 11.0 62 152-216 162-228 (327)
285 PRK05541 adenylylsulfate kinas 97.6 0.00026 5.6E-09 55.0 7.8 36 80-117 6-41 (176)
286 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00055 1.2E-08 65.9 11.5 47 57-103 564-617 (852)
287 CHL00095 clpC Clp protease ATP 97.6 0.00028 6E-09 67.7 9.5 47 57-103 508-561 (821)
288 cd03257 ABC_NikE_OppD_transpor 97.6 0.00073 1.6E-08 54.5 10.7 61 154-217 155-220 (228)
289 PRK07667 uridine kinase; Provi 97.6 7.9E-05 1.7E-09 59.0 4.9 37 67-103 3-39 (193)
290 TIGR01186 proV glycine betaine 97.6 0.00084 1.8E-08 58.4 11.5 61 153-216 138-203 (363)
291 PRK10762 D-ribose transporter 97.6 0.00079 1.7E-08 61.0 11.8 62 150-216 147-214 (501)
292 COG0488 Uup ATPase components 97.6 0.0008 1.7E-08 61.2 11.7 127 80-208 347-504 (530)
293 PRK10938 putative molybdenum t 97.6 0.00071 1.5E-08 61.1 11.5 25 80-104 28-52 (490)
294 PRK13632 cbiO cobalt transport 97.6 0.00068 1.5E-08 56.5 10.6 25 80-104 34-58 (271)
295 PRK14269 phosphate ABC transpo 97.6 0.00051 1.1E-08 56.3 9.7 58 150-207 148-208 (246)
296 PRK15056 manganese/iron transp 97.6 0.0011 2.4E-08 55.3 11.8 24 81-104 33-56 (272)
297 cd03260 ABC_PstB_phosphate_tra 97.6 0.0012 2.6E-08 53.3 11.8 24 81-104 26-49 (227)
298 PRK13634 cbiO cobalt transport 97.6 0.00084 1.8E-08 56.6 11.2 62 152-216 153-219 (290)
299 TIGR02211 LolD_lipo_ex lipopro 97.6 0.0011 2.4E-08 53.3 11.5 24 81-104 31-54 (221)
300 CHL00176 ftsH cell division pr 97.6 0.00028 6E-09 65.6 8.9 47 58-104 183-239 (638)
301 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 0.0012 2.6E-08 53.8 11.7 60 153-216 148-210 (238)
302 cd03299 ABC_ModC_like Archeal 97.6 0.00098 2.1E-08 54.3 11.2 24 81-104 25-48 (235)
303 cd03233 ABC_PDR_domain1 The pl 97.6 0.001 2.2E-08 53.0 10.9 25 80-104 32-56 (202)
304 PRK13643 cbiO cobalt transport 97.6 0.0012 2.5E-08 55.7 11.7 63 151-216 151-217 (288)
305 PRK13646 cbiO cobalt transport 97.6 0.0012 2.7E-08 55.4 11.9 63 151-216 152-219 (286)
306 PRK15439 autoinducer 2 ABC tra 97.6 0.00092 2E-08 60.7 11.9 61 152-217 411-477 (510)
307 cd03252 ABCC_Hemolysin The ABC 97.6 0.00099 2.1E-08 54.2 11.0 52 154-205 148-202 (237)
308 PRK09700 D-allose transporter 97.6 0.00061 1.3E-08 61.8 10.7 60 152-216 153-218 (510)
309 PRK14273 phosphate ABC transpo 97.6 0.00086 1.9E-08 55.2 10.7 25 80-104 32-56 (254)
310 PRK15064 ABC transporter ATP-b 97.6 0.0013 2.9E-08 60.0 12.9 133 80-217 344-509 (530)
311 cd03251 ABCC_MsbA MsbA is an e 97.6 0.0011 2.5E-08 53.7 11.2 56 151-206 145-203 (234)
312 PRK10982 galactose/methyl gala 97.6 0.00098 2.1E-08 60.2 11.9 61 153-216 143-207 (491)
313 PRK11034 clpA ATP-dependent Cl 97.6 0.00037 7.9E-09 66.0 9.4 44 58-103 186-229 (758)
314 PTZ00361 26 proteosome regulat 97.6 0.00058 1.3E-08 60.7 10.1 45 59-103 184-239 (438)
315 PRK10070 glycine betaine trans 97.6 0.0013 2.7E-08 58.0 12.1 62 152-216 172-238 (400)
316 TIGR01166 cbiO cobalt transpor 97.6 0.00046 1E-08 54.3 8.6 24 81-104 18-41 (190)
317 PRK13641 cbiO cobalt transport 97.6 0.0015 3.2E-08 55.0 12.1 54 152-207 153-212 (287)
318 TIGR01420 pilT_fam pilus retra 97.6 0.00064 1.4E-08 58.7 10.1 112 81-204 122-234 (343)
319 PRK13651 cobalt transporter AT 97.6 0.0012 2.5E-08 56.2 11.5 60 152-216 173-238 (305)
320 cd03253 ABCC_ATM1_transporter 97.6 0.002 4.2E-08 52.4 12.5 61 152-216 145-208 (236)
321 PRK13637 cbiO cobalt transport 97.6 0.0012 2.6E-08 55.6 11.5 59 149-207 149-212 (287)
322 cd03245 ABCC_bacteriocin_expor 97.6 0.0013 2.9E-08 52.8 11.3 25 80-104 29-53 (220)
323 PRK14259 phosphate ABC transpo 97.6 0.00084 1.8E-08 55.9 10.4 25 80-104 38-62 (269)
324 KOG2227 Pre-initiation complex 97.6 0.00065 1.4E-08 60.0 9.9 113 56-172 148-266 (529)
325 PRK14268 phosphate ABC transpo 97.6 0.00078 1.7E-08 55.7 10.1 24 81-104 38-61 (258)
326 PRK11147 ABC transporter ATPas 97.6 0.0019 4.1E-08 60.3 13.8 62 150-216 162-226 (635)
327 PRK10418 nikD nickel transport 97.6 0.0016 3.4E-08 53.7 11.9 24 81-104 29-52 (254)
328 cd01394 radB RadB. The archaea 97.6 0.00062 1.3E-08 54.7 9.3 92 79-172 17-113 (218)
329 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.0014 3.1E-08 52.2 11.2 61 153-217 134-197 (207)
330 PRK09984 phosphonate/organopho 97.6 0.00091 2E-08 55.4 10.5 61 153-216 161-226 (262)
331 PF14532 Sigma54_activ_2: Sigm 97.6 0.00013 2.8E-09 54.5 4.9 106 61-200 1-110 (138)
332 cd03248 ABCC_TAP TAP, the Tran 97.6 0.0015 3.2E-08 52.8 11.4 61 153-217 159-222 (226)
333 cd03234 ABCG_White The White s 97.6 0.0017 3.7E-08 52.5 11.8 25 80-104 32-56 (226)
334 PRK14265 phosphate ABC transpo 97.6 0.0011 2.3E-08 55.5 10.8 63 152-217 169-234 (274)
335 COG2607 Predicted ATPase (AAA+ 97.6 0.0025 5.5E-08 51.9 12.3 100 58-186 60-166 (287)
336 cd03254 ABCC_Glucan_exporter_l 97.6 0.0028 6.1E-08 51.2 13.0 62 151-216 146-210 (229)
337 TIGR01241 FtsH_fam ATP-depende 97.6 0.001 2.2E-08 60.3 11.4 48 57-104 54-111 (495)
338 PRK07261 topology modulation p 97.6 0.0002 4.3E-09 55.6 5.9 35 83-117 2-37 (171)
339 PRK11231 fecE iron-dicitrate t 97.5 0.0014 3E-08 54.1 11.3 55 153-207 147-205 (255)
340 PRK13633 cobalt transporter AT 97.5 0.001 2.3E-08 55.7 10.7 54 152-205 152-210 (280)
341 PRK13649 cbiO cobalt transport 97.5 0.0012 2.5E-08 55.3 10.9 55 153-207 154-212 (280)
342 PRK13549 xylose transporter AT 97.5 0.0013 2.9E-08 59.6 12.0 60 152-216 413-478 (506)
343 PF05621 TniB: Bacterial TniB 97.5 0.0017 3.6E-08 54.7 11.6 112 57-173 33-156 (302)
344 PRK15177 Vi polysaccharide exp 97.5 0.0012 2.7E-08 53.0 10.6 24 81-104 13-36 (213)
345 PF07693 KAP_NTPase: KAP famil 97.5 0.0021 4.6E-08 54.6 12.6 41 64-104 2-43 (325)
346 PRK09536 btuD corrinoid ABC tr 97.5 0.0015 3.2E-08 57.6 11.8 56 150-207 145-206 (402)
347 PRK13635 cbiO cobalt transport 97.5 0.0011 2.4E-08 55.6 10.5 54 152-205 148-206 (279)
348 PRK13642 cbiO cobalt transport 97.5 0.0012 2.7E-08 55.1 10.8 54 152-205 148-206 (277)
349 PRK13657 cyclic beta-1,2-gluca 97.5 0.00075 1.6E-08 62.3 10.3 24 80-103 360-383 (588)
350 PRK13549 xylose transporter AT 97.5 0.0013 2.9E-08 59.6 11.8 60 152-216 151-216 (506)
351 TIGR02769 nickel_nikE nickel i 97.5 0.0013 2.9E-08 54.5 10.9 55 153-207 159-218 (265)
352 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00038 8.3E-09 63.2 7.9 92 58-172 190-292 (802)
353 TIGR01817 nifA Nif-specific re 97.5 0.0039 8.5E-08 57.0 14.8 49 56-104 194-242 (534)
354 PRK14237 phosphate transporter 97.5 0.0018 3.9E-08 53.8 11.6 25 80-104 45-69 (267)
355 PRK14261 phosphate ABC transpo 97.5 0.0018 3.9E-08 53.3 11.5 24 80-103 31-54 (253)
356 PRK11288 araG L-arabinose tran 97.5 0.0015 3.2E-08 59.2 11.9 61 151-216 403-469 (501)
357 TIGR02640 gas_vesic_GvpN gas v 97.5 0.00097 2.1E-08 55.4 9.8 33 67-103 11-43 (262)
358 PRK11819 putative ABC transpor 97.5 0.0028 6E-08 58.3 13.7 60 152-216 171-233 (556)
359 PRK14275 phosphate ABC transpo 97.5 0.0014 3E-08 55.1 10.9 23 81-103 65-87 (286)
360 PRK15093 antimicrobial peptide 97.5 0.0013 2.9E-08 56.4 10.9 55 153-207 167-226 (330)
361 COG1123 ATPase components of v 97.5 0.0014 3.1E-08 59.2 11.4 62 152-216 162-228 (539)
362 PRK13644 cbiO cobalt transport 97.5 0.002 4.3E-08 53.9 11.6 52 152-205 144-201 (274)
363 cd03240 ABC_Rad50 The catalyti 97.5 0.0022 4.7E-08 51.2 11.4 60 154-217 131-196 (204)
364 PRK14249 phosphate ABC transpo 97.5 0.0023 5E-08 52.6 11.8 55 153-207 156-213 (251)
365 TIGR01189 ccmA heme ABC export 97.5 0.0012 2.6E-08 52.3 9.7 25 80-104 25-49 (198)
366 PRK14262 phosphate ABC transpo 97.5 0.0023 5E-08 52.5 11.8 23 81-103 29-51 (250)
367 cd03250 ABCC_MRP_domain1 Domai 97.5 0.0049 1.1E-07 48.9 13.3 64 150-217 133-201 (204)
368 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0018 4E-08 52.8 11.0 122 72-198 12-169 (237)
369 PRK11288 araG L-arabinose tran 97.5 0.0017 3.6E-08 58.9 11.8 53 153-207 149-207 (501)
370 PRK14245 phosphate ABC transpo 97.5 0.0027 5.8E-08 52.1 12.1 23 81-103 29-51 (250)
371 PRK11174 cysteine/glutathione 97.5 0.0022 4.9E-08 59.2 12.8 26 79-104 374-399 (588)
372 PRK06762 hypothetical protein; 97.5 0.00095 2.1E-08 51.2 8.8 23 81-103 2-24 (166)
373 TIGR02323 CP_lyasePhnK phospho 97.5 0.0022 4.7E-08 52.8 11.4 57 151-207 155-216 (253)
374 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00067 1.5E-08 53.9 8.1 21 82-102 29-49 (200)
375 PRK13541 cytochrome c biogenes 97.5 0.0016 3.5E-08 51.4 10.3 24 81-104 26-49 (195)
376 KOG0989 Replication factor C, 97.5 0.00089 1.9E-08 56.2 8.9 124 57-198 35-167 (346)
377 COG4181 Predicted ABC-type tra 97.5 0.0019 4.2E-08 50.1 10.0 125 81-207 36-214 (228)
378 PRK15079 oligopeptide ABC tran 97.5 0.0018 3.9E-08 55.7 11.2 56 152-207 169-229 (331)
379 PRK10744 pstB phosphate transp 97.5 0.0016 3.5E-08 53.9 10.6 62 152-216 164-228 (260)
380 PRK15112 antimicrobial peptide 97.5 0.0015 3.2E-08 54.4 10.3 61 153-216 158-223 (267)
381 PRK14257 phosphate ABC transpo 97.5 0.0019 4.2E-08 55.4 11.3 24 81-104 108-131 (329)
382 KOG0741 AAA+-type ATPase [Post 97.5 0.0016 3.5E-08 58.5 10.8 109 79-208 536-659 (744)
383 PF00485 PRK: Phosphoribulokin 97.4 0.00093 2E-08 52.8 8.7 21 83-103 1-21 (194)
384 cd00983 recA RecA is a bacter 97.4 0.00053 1.1E-08 58.6 7.6 87 79-172 53-143 (325)
385 PRK14235 phosphate transporter 97.4 0.0027 5.9E-08 52.7 11.9 56 152-207 171-229 (267)
386 cd03283 ABC_MutS-like MutS-lik 97.4 0.00013 2.8E-09 58.2 3.7 22 82-103 26-47 (199)
387 PRK03695 vitamin B12-transport 97.4 0.0026 5.7E-08 52.2 11.6 23 81-103 22-44 (248)
388 PRK10762 D-ribose transporter 97.4 0.0017 3.7E-08 58.8 11.4 60 152-216 403-468 (501)
389 PRK14238 phosphate transporter 97.4 0.0016 3.5E-08 54.2 10.4 25 80-104 49-73 (271)
390 TIGR02633 xylG D-xylose ABC tr 97.4 0.0024 5.1E-08 57.9 12.2 25 80-104 285-309 (500)
391 PRK13409 putative ATPase RIL; 97.4 0.0016 3.4E-08 60.3 11.1 53 152-207 220-278 (590)
392 COG0593 DnaA ATPase involved i 97.4 0.0009 2E-08 58.7 9.1 96 80-198 112-216 (408)
393 COG1117 PstB ABC-type phosphat 97.4 0.0026 5.6E-08 51.0 10.7 53 153-208 158-216 (253)
394 TIGR01243 CDC48 AAA family ATP 97.4 0.00096 2.1E-08 63.3 10.0 45 59-103 179-234 (733)
395 PRK11889 flhF flagellar biosyn 97.4 0.0033 7.2E-08 55.1 12.4 24 80-103 240-263 (436)
396 PRK14242 phosphate transporter 97.4 0.0028 6.1E-08 52.1 11.6 24 80-103 31-54 (253)
397 COG1123 ATPase components of v 97.4 0.0024 5.1E-08 57.8 11.8 62 152-216 437-503 (539)
398 PRK09473 oppD oligopeptide tra 97.4 0.0021 4.5E-08 55.2 11.1 60 153-216 170-235 (330)
399 TIGR01978 sufC FeS assembly AT 97.4 0.0032 7E-08 51.3 11.9 54 153-206 153-210 (243)
400 COG0572 Udk Uridine kinase [Nu 97.4 0.00039 8.5E-09 55.8 6.2 25 79-103 6-30 (218)
401 COG1484 DnaC DNA replication p 97.4 0.00062 1.4E-08 56.3 7.6 74 80-172 104-177 (254)
402 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.0016 3.4E-08 50.8 9.5 21 83-103 1-21 (183)
403 PRK11160 cysteine/glutathione 97.4 0.002 4.3E-08 59.4 11.7 25 80-104 365-389 (574)
404 PRK08533 flagellar accessory p 97.4 0.0015 3.2E-08 53.3 9.7 50 79-130 22-71 (230)
405 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0037 7.9E-08 50.6 11.9 116 79-199 18-165 (229)
406 PRK14239 phosphate transporter 97.4 0.0028 6E-08 52.1 11.3 23 81-103 31-53 (252)
407 PF08423 Rad51: Rad51; InterP 97.4 0.00064 1.4E-08 56.3 7.4 93 79-172 36-143 (256)
408 PF07728 AAA_5: AAA domain (dy 97.4 0.00014 3.1E-09 54.1 3.2 83 84-184 2-89 (139)
409 COG3899 Predicted ATPase [Gene 97.4 0.0011 2.4E-08 63.7 10.0 45 59-103 1-46 (849)
410 cd03289 ABCC_CFTR2 The CFTR su 97.4 0.0029 6.3E-08 53.0 11.4 25 80-104 29-53 (275)
411 PRK14241 phosphate transporter 97.4 0.0022 4.7E-08 53.0 10.6 24 81-104 30-53 (258)
412 PRK09700 D-allose transporter 97.4 0.0029 6.2E-08 57.5 12.2 60 152-216 417-482 (510)
413 PRK10636 putative ABC transpor 97.4 0.0029 6.2E-08 59.2 12.4 125 80-207 337-494 (638)
414 PRK14267 phosphate ABC transpo 97.4 0.0032 7E-08 51.7 11.5 24 81-104 30-53 (253)
415 PRK09580 sufC cysteine desulfu 97.4 0.0038 8.3E-08 51.1 11.9 53 152-206 153-211 (248)
416 PRK11034 clpA ATP-dependent Cl 97.4 0.0006 1.3E-08 64.6 7.9 48 57-104 457-511 (758)
417 TIGR01187 potA spermidine/putr 97.4 0.0015 3.3E-08 56.0 9.8 62 152-216 108-174 (325)
418 PLN03073 ABC transporter F fam 97.4 0.0035 7.5E-08 59.3 12.9 52 154-207 354-408 (718)
419 PRK13631 cbiO cobalt transport 97.4 0.0036 7.8E-08 53.6 12.0 25 80-104 51-75 (320)
420 PLN03073 ABC transporter F fam 97.4 0.0035 7.5E-08 59.3 12.9 131 80-216 534-697 (718)
421 PRK14274 phosphate ABC transpo 97.4 0.0025 5.5E-08 52.6 10.8 23 81-103 38-60 (259)
422 PRK14251 phosphate ABC transpo 97.4 0.002 4.3E-08 52.9 10.1 61 153-216 156-219 (251)
423 PRK14256 phosphate ABC transpo 97.4 0.0029 6.4E-08 52.0 11.1 24 81-104 30-53 (252)
424 TIGR02203 MsbA_lipidA lipid A 97.4 0.0011 2.5E-08 60.8 9.5 65 147-216 473-540 (571)
425 COG1122 CbiO ABC-type cobalt t 97.4 0.0028 6.2E-08 51.8 10.7 61 153-217 147-213 (235)
426 PF13604 AAA_30: AAA domain; P 97.4 0.0016 3.4E-08 51.7 9.1 107 81-201 18-132 (196)
427 cd01124 KaiC KaiC is a circadi 97.4 0.0018 3.9E-08 50.4 9.3 45 84-130 2-46 (187)
428 COG3842 PotA ABC-type spermidi 97.4 0.002 4.2E-08 55.6 10.1 124 81-207 31-204 (352)
429 PRK07399 DNA polymerase III su 97.4 0.0022 4.8E-08 54.7 10.4 45 58-103 4-48 (314)
430 PRK10522 multidrug transporter 97.4 0.0033 7.1E-08 57.7 12.3 24 80-103 348-371 (547)
431 PRK14272 phosphate ABC transpo 97.4 0.0042 9.1E-08 51.0 11.8 24 81-104 30-53 (252)
432 TIGR03415 ABC_choXWV_ATP choli 97.4 0.0038 8.2E-08 54.7 12.1 57 151-207 171-232 (382)
433 TIGR02982 heterocyst_DevA ABC 97.4 0.0027 5.8E-08 51.1 10.4 24 81-104 31-54 (220)
434 PRK09270 nucleoside triphospha 97.4 0.00032 7E-09 57.0 5.0 26 78-103 30-55 (229)
435 PRK11147 ABC transporter ATPas 97.3 0.0037 8E-08 58.4 12.7 126 80-207 344-504 (635)
436 PRK11176 lipid transporter ATP 97.3 0.0014 3E-08 60.5 9.8 24 80-103 368-391 (582)
437 TIGR02012 tigrfam_recA protein 97.3 0.00094 2E-08 57.0 7.9 89 77-172 51-143 (321)
438 COG4618 ArpD ABC-type protease 97.3 0.0027 5.8E-08 56.7 10.9 56 151-207 479-539 (580)
439 PRK14258 phosphate ABC transpo 97.3 0.0045 9.7E-08 51.2 11.9 62 153-217 159-225 (261)
440 PRK14260 phosphate ABC transpo 97.3 0.0028 6.1E-08 52.4 10.7 23 81-103 33-55 (259)
441 PRK05707 DNA polymerase III su 97.3 0.0045 9.8E-08 53.1 12.1 40 161-200 105-146 (328)
442 PRK11819 putative ABC transpor 97.3 0.005 1.1E-07 56.6 13.2 133 80-217 349-516 (556)
443 PRK13645 cbiO cobalt transport 97.3 0.0033 7.2E-08 52.8 11.2 24 81-104 37-60 (289)
444 KOG2228 Origin recognition com 97.3 0.0012 2.6E-08 56.2 8.3 141 56-200 22-182 (408)
445 PRK14246 phosphate ABC transpo 97.3 0.004 8.7E-08 51.5 11.5 62 152-216 161-225 (257)
446 PRK14271 phosphate ABC transpo 97.3 0.0047 1E-07 51.7 12.0 25 80-104 46-70 (276)
447 TIGR02857 CydD thiol reductant 97.3 0.0025 5.5E-08 58.1 11.2 25 79-103 346-370 (529)
448 cd03288 ABCC_SUR2 The SUR doma 97.3 0.0051 1.1E-07 50.8 12.0 62 151-216 163-227 (257)
449 TIGR00235 udk uridine kinase. 97.3 0.00021 4.4E-09 57.2 3.6 26 79-104 4-29 (207)
450 cd03115 SRP The signal recogni 97.3 0.0019 4.2E-08 49.9 8.9 21 83-103 2-22 (173)
451 PRK14236 phosphate transporter 97.3 0.004 8.7E-08 51.9 11.4 25 80-104 50-74 (272)
452 TIGR01842 type_I_sec_PrtD type 97.3 0.005 1.1E-07 56.4 13.0 26 79-104 342-367 (544)
453 cd01129 PulE-GspE PulE/GspE Th 97.3 0.0013 2.7E-08 54.8 8.3 124 61-203 62-187 (264)
454 TIGR03269 met_CoM_red_A2 methy 97.3 0.0035 7.5E-08 57.1 11.8 130 83-217 28-243 (520)
455 COG4107 PhnK ABC-type phosphon 97.3 0.011 2.4E-07 46.1 12.6 59 147-207 155-219 (258)
456 PRK15429 formate hydrogenlyase 97.3 0.004 8.6E-08 58.7 12.5 48 58-105 376-423 (686)
457 PRK14264 phosphate ABC transpo 97.3 0.0025 5.4E-08 54.1 10.2 56 152-207 208-266 (305)
458 PRK05480 uridine/cytidine kina 97.3 0.00021 4.5E-09 57.1 3.4 25 80-104 5-29 (209)
459 PRK09354 recA recombinase A; P 97.3 0.0013 2.7E-08 56.8 8.3 97 69-172 47-148 (349)
460 PRK08058 DNA polymerase III su 97.3 0.0048 1E-07 53.0 11.9 44 59-103 6-50 (329)
461 KOG0744 AAA+-type ATPase [Post 97.3 0.00097 2.1E-08 56.5 7.3 81 80-172 176-260 (423)
462 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.0056 1.2E-07 56.2 13.1 132 80-216 347-513 (552)
463 PF00448 SRP54: SRP54-type pro 97.3 0.00051 1.1E-08 54.6 5.5 23 81-103 1-23 (196)
464 TIGR00954 3a01203 Peroxysomal 97.3 0.0057 1.2E-07 57.4 13.3 131 80-217 477-652 (659)
465 PRK14244 phosphate ABC transpo 97.3 0.0041 8.9E-08 51.1 11.0 23 81-103 31-53 (251)
466 PRK14248 phosphate ABC transpo 97.3 0.0038 8.2E-08 51.9 10.9 24 80-103 46-69 (268)
467 TIGR03375 type_I_sec_LssB type 97.3 0.0021 4.5E-08 60.6 10.3 24 80-103 490-513 (694)
468 PRK14240 phosphate transporter 97.3 0.0047 1E-07 50.7 11.3 23 81-103 29-51 (250)
469 PRK11608 pspF phage shock prot 97.3 0.0015 3.4E-08 55.9 8.7 47 58-104 6-52 (326)
470 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00023 5E-09 57.7 3.4 122 81-207 31-161 (222)
471 COG0563 Adk Adenylate kinase a 97.3 0.00084 1.8E-08 52.5 6.4 95 83-185 2-101 (178)
472 TIGR02633 xylG D-xylose ABC tr 97.3 0.0039 8.4E-08 56.5 11.7 61 152-217 149-215 (500)
473 TIGR02788 VirB11 P-type DNA tr 97.3 0.0022 4.7E-08 54.6 9.4 113 81-205 144-258 (308)
474 PRK14270 phosphate ABC transpo 97.3 0.004 8.6E-08 51.2 10.7 24 80-103 29-52 (251)
475 COG1875 NYN ribonuclease and A 97.3 0.00084 1.8E-08 57.7 6.7 37 62-100 228-264 (436)
476 PRK08233 hypothetical protein; 97.3 0.00024 5.2E-09 55.1 3.3 24 81-104 3-26 (182)
477 PRK14253 phosphate ABC transpo 97.3 0.0037 8.1E-08 51.2 10.5 55 153-207 154-211 (249)
478 TIGR01069 mutS2 MutS2 family p 97.3 0.00017 3.6E-09 68.5 2.8 120 81-207 322-452 (771)
479 PRK14243 phosphate transporter 97.3 0.0037 8E-08 51.9 10.6 24 80-103 35-58 (264)
480 TIGR02239 recomb_RAD51 DNA rep 97.3 0.002 4.3E-08 55.0 9.0 104 68-172 83-201 (316)
481 PRK06793 fliI flagellum-specif 97.2 0.0028 6.1E-08 56.2 10.1 123 81-208 156-294 (432)
482 TIGR01192 chvA glucan exporter 97.2 0.0027 5.9E-08 58.7 10.5 25 79-103 359-383 (585)
483 PRK00771 signal recognition pa 97.2 0.0063 1.4E-07 54.2 12.3 24 80-103 94-117 (437)
484 TIGR01846 type_I_sec_HlyB type 97.2 0.0053 1.1E-07 57.9 12.5 25 80-104 482-506 (694)
485 PRK10535 macrolide transporter 97.2 0.0053 1.2E-07 57.5 12.4 62 152-217 152-217 (648)
486 PRK15455 PrkA family serine pr 97.2 0.00038 8.3E-09 63.4 4.6 46 58-103 76-125 (644)
487 cd03285 ABC_MSH2_euk MutS2 hom 97.2 0.00026 5.7E-09 57.4 3.3 122 80-207 29-160 (222)
488 TIGR03719 ABC_ABC_ChvD ATP-bin 97.2 0.0095 2.1E-07 54.7 13.8 25 80-104 30-54 (552)
489 TIGR01257 rim_protein retinal- 97.2 0.0041 8.9E-08 64.8 12.3 51 153-207 1070-1127(2272)
490 PF13238 AAA_18: AAA domain; P 97.2 0.00023 5.1E-09 51.7 2.7 20 84-103 1-20 (129)
491 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0025 5.5E-08 48.9 8.4 118 82-201 3-139 (159)
492 PRK04328 hypothetical protein; 97.2 0.0047 1E-07 50.9 10.7 122 72-198 14-171 (249)
493 COG3903 Predicted ATPase [Gene 97.2 0.00012 2.7E-09 63.4 1.3 112 80-201 13-128 (414)
494 TIGR02868 CydC thiol reductant 97.2 0.003 6.5E-08 57.6 10.4 26 79-104 359-384 (529)
495 PRK15134 microcin C ABC transp 97.2 0.0037 8.1E-08 57.0 11.0 25 80-104 311-335 (529)
496 PRK05022 anaerobic nitric oxid 97.2 0.01 2.2E-07 54.0 13.7 48 57-104 186-233 (509)
497 PTZ00301 uridine kinase; Provi 97.2 0.00028 6E-09 56.7 3.2 23 81-103 3-25 (210)
498 PLN03187 meiotic recombination 97.2 0.0018 4E-08 55.8 8.3 93 79-172 124-231 (344)
499 PRK14252 phosphate ABC transpo 97.2 0.0048 1E-07 51.2 10.7 25 80-104 41-65 (265)
500 PRK10261 glutathione transport 97.2 0.0059 1.3E-07 56.9 12.4 62 152-216 471-537 (623)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-29 Score=236.12 Aligned_cols=194 Identities=22% Similarity=0.232 Sum_probs=154.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccCccc----cc---C------CCCccCCCceeeehhhHHHHHHHHhcCCCCceE
Q 040890 17 ITLSKLQGILKEINYLVHEYEKAIDTFIMSS----MQ---Q------NGERSSKERCVMLLEDLKELLNQLIEGPPQLSV 83 (221)
Q Consensus 17 ~~~~~i~~~i~~i~~~~~~i~~~~~~~~~~~----~~---~------~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~v 83 (221)
...++.+..+..+.+++..+.+....+.... +. . ..|..+..+ ||.+..++++.+.|..++. .+
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~i 181 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GI 181 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CE
Confidence 3455566666666666665555555444322 11 0 111122333 9999999999999999774 99
Q ss_pred EEEEccCCCcHHHHHHHHhcCcC-CCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHh
Q 040890 84 VAVIDSYGFDKAVFAAEAYNSDY-VKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDYL 159 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L 159 (221)
++|+||||+||||||+.++|+.. ++.+|+..+|| |++++...++.+|+..++..... ... ...++...+.+.|
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~---~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE---WEDKEEDELASKLLNLL 258 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc---cchhhHHHHHHHHHHHh
Confidence 99999999999999999999977 99999999999 99999999999999998874331 122 4578999999999
Q ss_pred CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh-ccCCCCceEeccc
Q 040890 160 KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF-CRLDNDLMFTLIL 218 (221)
Q Consensus 160 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~-~~~~~~~v~~l~~ 218 (221)
++|||||||||||+...|+.|..++|...+||+|++|||+++||.. |+ .+..+++..
T Consensus 259 ~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~~~~v~~ 316 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDYPIEVEC 316 (889)
T ss_pred ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCccccccc
Confidence 9999999999999999999999999998899999999999999999 65 355555543
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=2.5e-28 Score=204.42 Aligned_cols=155 Identities=24% Similarity=0.332 Sum_probs=124.2
Q ss_pred ehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcc
Q 040890 63 LLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSAL 140 (221)
Q Consensus 63 ~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~ 140 (221)
|+.++++|.++|.....+.++|+|+||||+||||||..++++..++.+|+..+|+ +...+...++..|+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 6889999999999866789999999999999999999999966689999999999 77788899999999999876331
Q ss_pred hhcccC-CHHHHHHHHHHHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecccC
Q 040890 141 REIMGK-GFRQRKTALHDYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLILF 219 (221)
Q Consensus 141 ~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~~~ 219 (221)
. ... +...+...+.+.|+++++||||||||+...|+.+...++....||+||||||+..++..++. ...+|+|..|
T Consensus 81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~l~~L 157 (287)
T PF00931_consen 81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIELEPL 157 (287)
T ss_dssp S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEECSS-
T ss_pred c--ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 1 122 78889999999999999999999999999999999888877789999999999999988874 2678888876
Q ss_pred C
Q 040890 220 Q 220 (221)
Q Consensus 220 ~ 220 (221)
.
T Consensus 158 ~ 158 (287)
T PF00931_consen 158 S 158 (287)
T ss_dssp -
T ss_pred c
Confidence 4
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.1e-22 Score=198.20 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=120.3
Q ss_pred cCCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-e----Cc---------
Q 040890 55 SSKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-S----AN--------- 120 (221)
Q Consensus 55 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s----~~--------- 120 (221)
...+++||+++.++++..+|..+....++++|+||||+||||||+++|+ ++..+|+..+|+ . ..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccc
Confidence 3467899999999999999976666799999999999999999999999 788899988876 1 10
Q ss_pred --CC-hHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEc
Q 040890 121 --LD-PYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAML 197 (221)
Q Consensus 121 --~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTT 197 (221)
++ ...+..+++.++...... ... . ...+++.|+++|+||||||||+...|+.+.....+.++||+|||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~----~~~--~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI----KIY--H-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc----ccC--C-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 01 123445555554432211 111 1 2457788999999999999999999999987777678899999999
Q ss_pred CChHHHhhccCCCCceEecccCC
Q 040890 198 TSNEIFRFCRLDNDLMFTLILFQ 220 (221)
Q Consensus 198 R~~~va~~~~~~~~~v~~l~~~~ 220 (221)
|+++++..++ .+++|+|..+.
T Consensus 332 rd~~vl~~~~--~~~~~~v~~l~ 352 (1153)
T PLN03210 332 KDKHFLRAHG--IDHIYEVCLPS 352 (1153)
T ss_pred CcHHHHHhcC--CCeEEEecCCC
Confidence 9999998876 46799987654
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.17 E-value=6.6e-10 Score=97.24 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=95.5
Q ss_pred ccCCCceeeehhhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHH
Q 040890 54 RSSKERCVMLLEDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDN 129 (221)
Q Consensus 54 ~~~~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~ 129 (221)
...++.++||++++++|...|... +.....+.|+|++|+|||++++.++++.......-..+++ ....+...++..
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 335678999999999999998442 2234557899999999999999999843222211234455 444567788999
Q ss_pred HHHHhccCCcchhcccCCHHHHHHHHHHHhC--CceEEEEEeCCCCh------HHHHHHhhhcCCCC-CCeEEEEEcCCh
Q 040890 130 ILKIMMPQSALREIMGKGFRQRKTALHDYLK--NKRYLIVLEDVLTN------EVRKYLGEALPDRH-NGSRVLAMLTSN 200 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~l~~~~-~gs~IivTTR~~ 200 (221)
|+.++...... ....+..++...+.+.+. ++..+||||+++.. +.+..+...+.... .+-.+|.++...
T Consensus 106 i~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 106 IARQLFGHPPP--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 99998752110 011156677777877774 45689999999742 34444444333221 123366666655
Q ss_pred HHHhh
Q 040890 201 EIFRF 205 (221)
Q Consensus 201 ~va~~ 205 (221)
.+...
T Consensus 184 ~~~~~ 188 (394)
T PRK00411 184 TFLYI 188 (394)
T ss_pred chhhh
Confidence 44443
No 5
>PF05729 NACHT: NACHT domain
Probab=99.15 E-value=3.3e-10 Score=86.61 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=71.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCC----CCeEEEE-eCcCCh----HHHHHHHHHHhccCCcchhcccCCHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSY----FHCHAWV-SANLDP----YVILDNILKIMMPQSALREIMGKGFRQRK 152 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv-s~~~~~----~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 152 (221)
+++.|+|.+|+||||+++.++........ +...+|+ ...... ..+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999998864222222 3455566 222221 1333333333332111 1111
Q ss_pred HHHHHHh-CCceEEEEEeCCCChH---------HHHHHh-hhcCC-CCCCeEEEEEcCChHHHhhccC-CCCceEecccC
Q 040890 153 TALHDYL-KNKRYLIVLEDVLTNE---------VRKYLG-EALPD-RHNGSRVLAMLTSNEIFRFCRL-DNDLMFTLILF 219 (221)
Q Consensus 153 ~~l~~~L-~~kr~LlVlDdv~~~~---------~~~~l~-~~l~~-~~~gs~IivTTR~~~va~~~~~-~~~~v~~l~~~ 219 (221)
.+...+ ..++++||||+++... .+..+. ..++. ..++++++||||.......... .....+++..|
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 222222 6789999999986321 133332 33332 3568999999998877332211 13357788777
Q ss_pred C
Q 040890 220 Q 220 (221)
Q Consensus 220 ~ 220 (221)
.
T Consensus 151 ~ 151 (166)
T PF05729_consen 151 S 151 (166)
T ss_pred C
Confidence 5
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=3e-09 Score=92.08 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=78.0
Q ss_pred CCCceeeehhhHHHHHHHHhc--CCCCceEEEEEccCCCcHHHHHHHHhcCcCC-CCC--C-CeEEEE--eCcCChHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIE--GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV-KSY--F-HCHAWV--SANLDPYVIL 127 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F-~~~~wv--s~~~~~~~~~ 127 (221)
.++.++||++++++|...|.. .+.....+.|+|++|+|||++++.+++.... ... . -..+|+ ....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 456899999999999999864 1233456889999999999999999874211 011 1 123456 3445667899
Q ss_pred HHHHHHhcc-CCcchhcccC-CHHHHHHHHHHHh--CCceEEEEEeCCCC
Q 040890 128 DNILKIMMP-QSALREIMGK-GFRQRKTALHDYL--KNKRYLIVLEDVLT 173 (221)
Q Consensus 128 ~~il~~l~~-~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~~ 173 (221)
..|+.++.. ....+ ... +..++...+.+.+ .+++++||||+++.
T Consensus 93 ~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~ 140 (365)
T TIGR02928 93 VELANQLRGSGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY 140 (365)
T ss_pred HHHHHHHhhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 999998842 01111 112 4556666666666 35688999999974
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=4.3e-08 Score=81.30 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=62.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHH---
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALH--- 156 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~--- 156 (221)
..++.|+|++|+|||||++.+++..... .+ ..+|+ ....+..+++..|+..++..... .+...+...+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~-----~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVNTRVDAEDLLRMVAADFGLETEG-----RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeCCCCCHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHH
Confidence 5678999999999999999999853321 11 23455 55567788888998887653221 12222333333
Q ss_pred -HHh-CCceEEEEEeCCCC--hHHHHHHh
Q 040890 157 -DYL-KNKRYLIVLEDVLT--NEVRKYLG 181 (221)
Q Consensus 157 -~~L-~~kr~LlVlDdv~~--~~~~~~l~ 181 (221)
..+ .+++++||+||++. ...++.+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~ 144 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELR 144 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHH
Confidence 323 67889999999985 45666664
No 8
>PF13173 AAA_14: AAA domain
Probab=98.94 E-value=6.3e-09 Score=77.06 Aligned_cols=102 Identities=7% Similarity=0.013 Sum_probs=67.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
.+++.|.|+.|+|||||+++++++.. .-...+++ .......... +.. +.+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-------------------hhh-hHHHHHHhh
Confidence 47889999999999999999887422 12334455 1111110000 000 233344444
Q ss_pred CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 160 KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 160 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
..+..+|+||++.....|......+.+..+..+|++|+.+......
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 4578899999999888888887777766667899999998877754
No 9
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.90 E-value=4.1e-08 Score=72.72 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=67.6
Q ss_pred eeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCc
Q 040890 61 VMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSA 139 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~ 139 (221)
+|++..++.+...+... ....+.|+|++|+|||+|++.+++... ..-...+++ ................
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~------ 70 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGH------ 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhh------
Confidence 36777888888887653 356788999999999999999998432 211233444 1111111100000000
Q ss_pred chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCCh-----HHHHHHhhhcCCC---CCCeEEEEEcCChH
Q 040890 140 LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTN-----EVRKYLGEALPDR---HNGSRVLAMLTSNE 201 (221)
Q Consensus 140 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~---~~gs~IivTTR~~~ 201 (221)
. ............+..+|++||++.. ..+..+...+... ..+..||+||....
T Consensus 71 -------~--~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 -------F--LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------h--hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 0011112223456789999999842 2233333333221 35788988888654
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.89 E-value=8.9e-09 Score=75.95 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=73.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCC-----CCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY-----FHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGKGFRQRK 152 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 152 (221)
+.+++.|+|.+|+|||++++.+.+. .... -...+|+ +...+...+...|+.++...... ..+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~ 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELR 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHH
Confidence 3578899999999999999998873 2110 2344577 44448999999999999875442 11667777
Q ss_pred HHHHHHhCCc-eEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 153 TALHDYLKNK-RYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 153 ~~l~~~L~~k-r~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
+.+.+.+... ..+||+|++.. ...++.|+.... ..+.++|++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888888544 45999999853 344555544443 567778887654
No 11
>PTZ00202 tuzin; Provisional
Probab=98.86 E-value=8e-08 Score=84.07 Aligned_cols=102 Identities=12% Similarity=-0.000 Sum_probs=71.8
Q ss_pred CCCceeeehhhHHHHHHHHhcCC-CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHh
Q 040890 56 SKERCVMLLEDLKELLNQLIEGP-PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
....|+||+.+...|...|...+ ...+++.|+|++|+|||||++.+..... ...++....+..++++.|+.+|
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNprg~eElLr~LL~AL 333 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVRGTEDTLRSVVKAL 333 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCCCHHHHHHHHHHHc
Confidence 46789999999999999986533 3356899999999999999999887322 1244422227799999999999
Q ss_pred ccCCcchhcccCCHHHHHHHHHHHh-----C-CceEEEEEe
Q 040890 135 MPQSALREIMGKGFRQRKTALHDYL-----K-NKRYLIVLE 169 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVlD 169 (221)
+..... ...++...+.+.| . +++.+||+-
T Consensus 334 GV~p~~------~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 334 GVPNVE------ACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred CCCCcc------cHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 963221 3334444444444 2 677777775
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.85 E-value=3.8e-09 Score=82.35 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=31.5
Q ss_pred ceeeehhhHHHHHHHHh-cCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 59 RCVMLLEDLKELLNQLI-EGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.|+||+++++.|...|. ......+.+.|+|++|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999993 22345789999999999999999998874
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.85 E-value=2.5e-08 Score=80.28 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=35.6
Q ss_pred eeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 60 CVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 60 ~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
|+||+.+++.|.+++..+. ...+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999998743 678889999999999999999883
No 14
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.76 E-value=1.9e-08 Score=82.81 Aligned_cols=91 Identities=7% Similarity=-0.115 Sum_probs=58.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eC--cCChHHHHHHHHHHhccCCc-chhcccC-CHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SA--NLDPYVILDNILKIMMPQSA-LREIMGK-GFRQRKTA 154 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~--~~~~~~~~~~il~~l~~~~~-~~~~~~~-~~~~l~~~ 154 (221)
-..++|+|++|+|||||++.++++.... +|+..+|+ ++ .+++.++++.+...+-.... .+..... -.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4667899999999999999999965444 89999998 44 47899999998433222111 0100001 11122222
Q ss_pred HHHH-hCCceEEEEEeCCC
Q 040890 155 LHDY-LKNKRYLIVLEDVL 172 (221)
Q Consensus 155 l~~~-L~~kr~LlVlDdv~ 172 (221)
...+ -.+++.+|++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25899999999985
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=2.2e-07 Score=89.30 Aligned_cols=133 Identities=12% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~ 133 (221)
...++-|. .|.+.|... ...+++.|+|++|.||||++...... ++..+|+ ..+.++..++..++..
T Consensus 13 ~~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 44566665 444444432 35789999999999999999987752 2368899 4555667777777777
Q ss_pred hccCCcc--hh------cccC-CHHHHHHHHHHHhC--CceEEEEEeCCCC--hHHHH-HHhhhcCCCCCCeEEEEEcCC
Q 040890 134 MMPQSAL--RE------IMGK-GFRQRKTALHDYLK--NKRYLIVLEDVLT--NEVRK-YLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 134 l~~~~~~--~~------~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~-~l~~~l~~~~~gs~IivTTR~ 199 (221)
+...... +. .... +...+...+...+. +.+++|||||+.. ..... .+...+.....+..+|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 7431110 00 0111 33344444444443 6789999999963 22323 333333334456788899997
Q ss_pred h
Q 040890 200 N 200 (221)
Q Consensus 200 ~ 200 (221)
.
T Consensus 162 ~ 162 (903)
T PRK04841 162 L 162 (903)
T ss_pred C
Confidence 4
No 16
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.64 E-value=4.8e-08 Score=84.51 Aligned_cols=90 Identities=10% Similarity=-0.030 Sum_probs=56.5
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcC--ChHHHHHHHHHHhccCC-cchhcccC-CHHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANL--DPYVILDNILKIMMPQS-ALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~--~~~~~~~~il~~l~~~~-~~~~~~~~-~~~~l~~~l 155 (221)
.-..|+|++|+||||||+.+|++.... +|++.+|| ++.. .+.+++++++..+-.+. +.+..... -.....+.-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 446789999999999999999964444 89999998 5555 67777777763322111 11100000 111122222
Q ss_pred HHH-hCCceEEEEEeCCC
Q 040890 156 HDY-LKNKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~-L~~kr~LlVlDdv~ 172 (221)
..+ -.++..||++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 222 26899999999985
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=3.6e-07 Score=74.42 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=59.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
...+.++|++|+|||+|++.+.+. .........|+ .... .. ... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~--~~---------------------~~~----~~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS--QY---------------------FSP----AVLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh--hh---------------------hhH----HHHhhc
Confidence 456789999999999999999884 22222234455 1100 00 000 111112
Q ss_pred CCceEEEEEeCCCC---hHHHHH-HhhhcCC-CCCCeEEEEE-cCC---------hHHHhhccCCCCceEecccCC
Q 040890 160 KNKRYLIVLEDVLT---NEVRKY-LGEALPD-RHNGSRVLAM-LTS---------NEIFRFCRLDNDLMFTLILFQ 220 (221)
Q Consensus 160 ~~kr~LlVlDdv~~---~~~~~~-l~~~l~~-~~~gs~IivT-TR~---------~~va~~~~~~~~~v~~l~~~~ 220 (221)
. +.-+|+|||+|. ...|+. +...+.. ...|+.+||+ +.. ++++..+. .+.++++...+
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd 162 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLT 162 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCC
Confidence 1 234899999985 345553 2222221 1235556554 443 47777776 35677776543
No 18
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.8e-06 Score=73.47 Aligned_cols=122 Identities=12% Similarity=0.201 Sum_probs=78.6
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC----cCCCCCCCeEEEEe---CcCChHHHHHHH
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS----DYVKSYFHCHAWVS---ANLDPYVILDNI 130 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wvs---~~~~~~~~~~~i 130 (221)
.+++|-+...+.|.+++..+. -.....++|+.|+||||+|+.+++. .....|.+...|.. .....++ ++++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 467898888999999987654 3456788999999999999888762 11234555555541 2222222 2333
Q ss_pred HHHhccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCC--CChHHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 131 LKIMMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDV--LTNEVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv--~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
.+.+.... ...++| ++|+|++ .+.+.++.|...+....+++.+|++|.+.+
T Consensus 82 ~~~~~~~p-------------------~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKKP-------------------YEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcCc-------------------ccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 33322110 113444 5555554 578889999999988778899998887654
No 19
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.57 E-value=3.3e-07 Score=80.98 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCceeeehhhHHH---HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKE---LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
-.++||.+..+.. |..++.... ...+.++|++|+||||||+.+.+. ....| ..++.......-+++++
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~---~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPF---EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEecccccHHHHHHHH--
Confidence 4568888877665 777776543 556778999999999999999883 32222 11221111111112222
Q ss_pred hccCCcchhcccCCHHHHHHHHHHH-hCCceEEEEEeCCCC--hHHHHHHhhhcC
Q 040890 134 MMPQSALREIMGKGFRQRKTALHDY-LKNKRYLIVLEDVLT--NEVRKYLGEALP 185 (221)
Q Consensus 134 l~~~~~~~~~~~~~~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~ 185 (221)
+..... ..+++.+|++|+++. ....+.|...+.
T Consensus 82 -------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le 117 (413)
T PRK13342 82 -------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE 117 (413)
T ss_pred -------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh
Confidence 222211 145788999999984 456666666554
No 20
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.55 E-value=2.5e-07 Score=78.26 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=73.1
Q ss_pred CceeeehhhHHHHHHHHhcC---CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHH
Q 040890 58 ERCVMLLEDLKELLNQLIEG---PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKI 133 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~ 133 (221)
.+|+|+++.++.|..++... ......+.++|++|+|||+||+.+.+. ....+ ..+ .........+...+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~l~~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGDLAAILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchhHHHHHHh
Confidence 46899999999999988631 223556789999999999999999883 32221 112 1111112222233333
Q ss_pred hccCCc-chhcccC-CHHHHHHHHHHHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 134 MMPQSA-LREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 134 l~~~~~-~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
+....- .-++.+. + ....+.+...+.+.+..+|+++..+...+.. .+| +.+-|..||+...+..
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~ 144 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTS 144 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCH
Confidence 322110 0000111 1 1223456666666667777776654444321 222 3566667777654443
No 21
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.54 E-value=6.6e-07 Score=82.68 Aligned_cols=142 Identities=15% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC---CeEEEE---eCc--CChHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF---HCHAWV---SAN--LDPYVILD 128 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv---s~~--~~~~~~~~ 128 (221)
-++++|.+..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+ ... .+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 457899999999988887543 35678999999999999999998754332222 123355 111 12222211
Q ss_pred HH---------------HHHhccCCc-------------chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHH
Q 040890 129 NI---------------LKIMMPQSA-------------LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRK 178 (221)
Q Consensus 129 ~i---------------l~~l~~~~~-------------~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~ 178 (221)
.+ +...+.... .-+..+.=.......+.+.+.+++++++.|+.|. ...|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 111110000 0011122112346788888888999999877764 45688
Q ss_pred HHhhhcCCCCCCeEEEE--EcCCh
Q 040890 179 YLGEALPDRHNGSRVLA--MLTSN 200 (221)
Q Consensus 179 ~l~~~l~~~~~gs~Iiv--TTR~~ 200 (221)
.++..+....+..-+++ ||++.
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred hhhhhcccCccceEEEEEeccccc
Confidence 88777766555555555 56644
No 22
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.9e-06 Score=72.86 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCceeeehhhHHHHHHHHhc--CCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC--eEEEE--eCcCChHHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIE--GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH--CHAWV--SANLDPYVILDN 129 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv--s~~~~~~~~~~~ 129 (221)
.+..+.+|+++++++...|.. .+..+.-+.|+|..|+|||+.++.+.+. +..... ..++| ....+..+++..
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 345599999999999988854 1122333889999999999999999984 333211 15667 556778899999
Q ss_pred HHHHhccCCcchhcccCCHHHHHHHHHHHh--CCceEEEEEeCCC
Q 040890 130 ILKIMMPQSALREIMGKGFRQRKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
|+.+++.... ......+..+.+.+.+ .++.+++|||++.
T Consensus 93 i~~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 93 ILNKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred HHHHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 9999873221 1115666777777777 4688999999987
No 23
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.49 E-value=4e-07 Score=79.12 Aligned_cols=90 Identities=7% Similarity=-0.081 Sum_probs=58.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--e--CcCChHHHHHHHHHHhccCCcc-hhcccCC-HHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--S--ANLDPYVILDNILKIMMPQSAL-REIMGKG-FRQRKTAL 155 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s--~~~~~~~~~~~il~~l~~~~~~-~~~~~~~-~~~l~~~l 155 (221)
..++|+|++|+|||||++.+++..... +|+..+|+ . ++.++.++++.++..+-..... +...... ...+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 457899999999999999999953333 69999998 4 3478999999986544332211 1000001 11222222
Q ss_pred HHH-hCCceEEEEEeCCC
Q 040890 156 HDY-LKNKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~-L~~kr~LlVlDdv~ 172 (221)
... -.+++.+|++|++.
T Consensus 248 e~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHcCCCeEEEEEChh
Confidence 222 26899999999985
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=1.2e-06 Score=81.40 Aligned_cols=138 Identities=10% Similarity=-0.035 Sum_probs=74.5
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......+. +..+..-...+.|...-..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-----~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-----SQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-----CCCCcccHHHHHHhcCCCc
Confidence 4678999999999999987654 234556999999999999987766321111100 0011111111111110000
Q ss_pred C---CcchhcccC-CHHHHHHHHHHHh-CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 137 Q---SALREIMGK-GFRQRKTALHDYL-KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 137 ~---~~~~~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
. .+...+... +..++++.+.... .++.-++|||++. +...++.|+..|.......++|++|.+.
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 0 000000000 2222333222111 3455688999997 4567888887776555677777777654
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=1.6e-06 Score=74.06 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=38.0
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|++..++.|..++..+. ...+.++|+.|+||||+|+.+.+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999887643 445789999999999999998773
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.7e-06 Score=73.09 Aligned_cols=156 Identities=13% Similarity=0.025 Sum_probs=80.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-..... ..+...-....++......
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-----~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-----SNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCCCHHHHHHhcCCCC
Confidence 4678999999999999887643 345678999999999999998876321111000 0000000011111110000
Q ss_pred CCc--chh-cccC-CHHHHHHHHHHH-hCCceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeEEEEEcCC-hHHHhhccC
Q 040890 137 QSA--LRE-IMGK-GFRQRKTALHDY-LKNKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSRVLAMLTS-NEIFRFCRL 208 (221)
Q Consensus 137 ~~~--~~~-~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~~ 208 (221)
.-. .+. .... +..++.+.+... ..+++-++|+|++.. ...++.+...+.......++|++|.+ ..+.....+
T Consensus 89 d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 89 DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 000 000 0000 122222222111 124556999999974 45677887777655566777776654 333333221
Q ss_pred CCCceEecccC
Q 040890 209 DNDLMFTLILF 219 (221)
Q Consensus 209 ~~~~v~~l~~~ 219 (221)
-..++++.++
T Consensus 169 -Rc~~~~~~~l 178 (363)
T PRK14961 169 -RCLQFKLKII 178 (363)
T ss_pred -hceEEeCCCC
Confidence 2245565554
No 27
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.1e-07 Score=82.84 Aligned_cols=157 Identities=11% Similarity=-0.045 Sum_probs=81.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMM 135 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~ 135 (221)
-.+++|-+...+.|.+++..+. -...+.++|++|+||||+|+.+.+.......+...+|. .....+.......+..+.
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 4568999998888988887754 23556899999999999999887642211222222232 000000000000000000
Q ss_pred cCCcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcC-ChHHHhhccCCC
Q 040890 136 PQSALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLT-SNEIFRFCRLDN 210 (221)
Q Consensus 136 ~~~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR-~~~va~~~~~~~ 210 (221)
.... ... +..++.+.+... ..+++-++|+|+++ +...++.|...+......+.+|++|. ...+...+.+ -
T Consensus 92 ~~~~----~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S-R 166 (504)
T PRK14963 92 AASN----NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS-R 166 (504)
T ss_pred cccc----CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc-c
Confidence 0000 001 222233322221 23566789999997 45678888888765445555555554 3444333322 2
Q ss_pred CceEecccC
Q 040890 211 DLMFTLILF 219 (221)
Q Consensus 211 ~~v~~l~~~ 219 (221)
..+|++..+
T Consensus 167 c~~~~f~~l 175 (504)
T PRK14963 167 TQHFRFRRL 175 (504)
T ss_pred eEEEEecCC
Confidence 346666554
No 28
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=1.2e-06 Score=78.90 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=71.3
Q ss_pred CCceeeehhhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHh
Q 040890 57 KERCVMLLEDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
-.+++|.+..++.|.+|+..- +...+.+.|+|++|+||||+|+.+.+. .. |+...+-..+......+..++...
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~ielnasd~r~~~~i~~~i~~~ 88 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEVIELNASDQRTADVIERVAGEA 88 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCEEEEcccccccHHHHHHHHHHh
Confidence 457999999999999998642 222678899999999999999999984 31 222222122222233334433332
Q ss_pred ccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCCh------HHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 135 MPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTN------EVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
..... ....++-+||||+++.. ..+..|...+.. .+..||+|+.
T Consensus 89 ~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n 138 (482)
T PRK04195 89 ATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN 138 (482)
T ss_pred hccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence 21110 01136789999999742 335666655542 2344666653
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.44 E-value=3.8e-06 Score=79.07 Aligned_cols=112 Identities=8% Similarity=0.018 Sum_probs=74.7
Q ss_pred CCceeeehhhHHHHHHHHhc---CCCCceEEEEEccCCCcHHHHHHHHhcCcCC---CCCCC--eEEEE--eCcCChHHH
Q 040890 57 KERCVMLLEDLKELLNQLIE---GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV---KSYFH--CHAWV--SANLDPYVI 126 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv--s~~~~~~~~ 126 (221)
++.++||++++++|...|.. +.....++.|+|++|+|||++++.|.+.... ....+ ..++| ..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 57789999999999998854 2333467889999999999999999863210 11122 23456 334567788
Q ss_pred HHHHHHHhccCCcchhcccC-CHHHHHHHHHHHhC---CceEEEEEeCCC
Q 040890 127 LDNILKIMMPQSALREIMGK-GFRQRKTALHDYLK---NKRYLIVLEDVL 172 (221)
Q Consensus 127 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~---~kr~LlVlDdv~ 172 (221)
+..|+.++..... ... ...++++.+...+. ....+||||++.
T Consensus 834 YqvI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 834 YQVLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 8888888854321 112 34455666666552 224589999986
No 30
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=1.7e-06 Score=69.77 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=30.9
Q ss_pred ehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 63 LLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 63 ~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-+..++.+.+++.. .....+.++|+.|+|||+||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44566777776543 33577889999999999999999874
No 31
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.3e-06 Score=77.67 Aligned_cols=136 Identities=12% Similarity=0.014 Sum_probs=75.0
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMM 135 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~ 135 (221)
-.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+.+... |.-|+ ..+++.-...+.+...-.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCCCCCccCHHHHHHhcCCC
Confidence 4678999999999999998754 246778999999999999998876311 11111 111111111111111000
Q ss_pred cCC---cchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 136 PQS---ALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 136 ~~~---~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
..- +....... +..++...+... ..++.-++|+|++. +....+.|...+.....+.++|++|.+
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 000 00000000 222222222111 13566789999997 456777887777655556677777755
No 32
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=2.2e-06 Score=75.63 Aligned_cols=105 Identities=9% Similarity=0.021 Sum_probs=66.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHh
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIM 134 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l 134 (221)
..++++.++..+.+...|.. ...+.++|++|+|||++|+.+.+.......|....|| ++.++..+++..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--- 246 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--- 246 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC---
Confidence 34678889999999999876 3456779999999999999998854444566777788 66666655543221
Q ss_pred ccCCcchhcccCCHHHHHHHHHHHh--CCceEEEEEeCCC
Q 040890 135 MPQSALREIMGKGFRQRKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
.... ...-...-+.+.+.... .+++++||+|++-
T Consensus 247 -P~~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEIN 282 (459)
T PRK11331 247 -PNGV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEIN 282 (459)
T ss_pred -CCCC---CeEecCchHHHHHHHHHhcccCCcEEEEehhh
Confidence 1100 00001111222333332 2468999999985
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.39 E-value=3e-06 Score=73.02 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=71.9
Q ss_pred CceeeehhhH---HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHh
Q 040890 58 ERCVMLLEDL---KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 58 ~~~vG~~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
+++||.+.-+ .-|..++..+ ++.-...||++|+||||||+.+.+ .....|.. +|...+-.+-+++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~---~sAv~~gvkdlr~----- 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA---LSAVTSGVKDLRE----- 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceEE---eccccccHHHHHH-----
Confidence 4455544332 2333444443 355566799999999999999988 44444422 1222222222233
Q ss_pred ccCCcchhcccCCHHHHHHHHH-HHhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEE--EcCChHHHhh--cc
Q 040890 135 MPQSALREIMGKGFRQRKTALH-DYLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLA--MLTSNEIFRF--CR 207 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~-~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~va~~--~~ 207 (221)
..+.-+ ....+++.+|++|.|. +..+-+.|...+ ..|.-|+| ||-|....-. .-
T Consensus 92 ----------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 92 ----------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred ----------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh
Confidence 333332 2235899999999996 566666554444 56776666 4544322110 00
Q ss_pred CCCCceEecccCC
Q 040890 208 LDNDLMFTLILFQ 220 (221)
Q Consensus 208 ~~~~~v~~l~~~~ 220 (221)
+-..||+|+++.
T Consensus 153 -SR~~vf~lk~L~ 164 (436)
T COG2256 153 -SRARVFELKPLS 164 (436)
T ss_pred -hhhheeeeecCC
Confidence 134577776653
No 34
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.39 E-value=6.8e-06 Score=64.30 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=73.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eC---cCChHHH------HHHHHHHhccCCcc---hhcccC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SA---NLDPYVI------LDNILKIMMPQSAL---REIMGK 146 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~---~~~~~~~------~~~il~~l~~~~~~---~~~~~~ 146 (221)
.-.+++|+|..|+|||||++.+... . ......+++ .. ..+.... +-++++.++..... +...+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3578999999999999999999883 2 234455555 21 1122221 12234444332111 111122
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC-CC-CeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR-HN-GSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
...+ .-.+...|...+-+++||+.- +....+.+...+..- .. |..||++|++.+.+..++ ++++.|.
T Consensus 101 G~~q-rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~---d~~~~l~ 172 (180)
T cd03214 101 GERQ-RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA---DRVILLK 172 (180)
T ss_pred HHHH-HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEE
Confidence 3333 334666677788899999865 333333443333221 22 677999999888775553 4555553
No 35
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=5.9e-06 Score=74.54 Aligned_cols=149 Identities=11% Similarity=0.008 Sum_probs=83.4
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCC----------CCCCeEEEE----eCcCC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVK----------SYFHCHAWV----SANLD 122 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------~~F~~~~wv----s~~~~ 122 (221)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...-. .++.|.... ....+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 4678999999999988777643 24567789999999999999987632111 111111000 00011
Q ss_pred hHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEE-EEc
Q 040890 123 PYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVL-AML 197 (221)
Q Consensus 123 ~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Ii-vTT 197 (221)
+.+ +.... .... +..++.+..... +.+++-++|+|+++ +...++.|...+....+.+.+| +||
T Consensus 99 v~e--------idaas----~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 99 IIE--------IDAAS----KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred EEE--------eeccC----CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 000 00000 0001 222333222211 24567789999998 4677888888877655566655 455
Q ss_pred CChHHHhhccCCCCceEecccC
Q 040890 198 TSNEIFRFCRLDNDLMFTLILF 219 (221)
Q Consensus 198 R~~~va~~~~~~~~~v~~l~~~ 219 (221)
+.+.+...+.+ -...+++..+
T Consensus 167 e~~kI~~tI~S-Rc~~~ef~~l 187 (507)
T PRK06645 167 EVQKIPATIIS-RCQRYDLRRL 187 (507)
T ss_pred ChHHhhHHHHh-cceEEEccCC
Confidence 65566554432 3345666544
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.37 E-value=1.7e-06 Score=74.07 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=40.1
Q ss_pred CCCceeeehhhHHHHHHHHhc---CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIE---GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+|+|+++.++.+..++.. .......+.++|++|+||||||+.+.+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 356799999999999888753 2334567889999999999999999883
No 37
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.35 E-value=3.5e-06 Score=72.16 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=80.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCC-CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPP-QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~ 133 (221)
.+++.+|+..+..|..++.+.+. -++.+.|.|-.|+|||.+.+.+++.... ..+|+ -..++..-++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 56788999999999999988765 3566689999999999999999995422 35899 7778999999999999
Q ss_pred hccCCcchhcccC---CHHHHHHHHHH--HhC--CceEEEEEeCCCCh
Q 040890 134 MMPQSALREIMGK---GFRQRKTALHD--YLK--NKRYLIVLEDVLTN 174 (221)
Q Consensus 134 l~~~~~~~~~~~~---~~~~l~~~l~~--~L~--~kr~LlVlDdv~~~ 174 (221)
.......+...+. .....+..+.+ ... ++.++||||++...
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 8532221111111 23334444444 222 45899999999743
No 38
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=7.1e-06 Score=75.37 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=38.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999998754 235567899999999999998865
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=72.28 Aligned_cols=47 Identities=17% Similarity=-0.000 Sum_probs=37.5
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999888888888776643 2355788999999999999998763
No 40
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.34 E-value=1.2e-05 Score=65.01 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=76.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC-------------------CCC--CeEEEEeCcCC------h---------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK-------------------SYF--HCHAWVSANLD------P--------- 123 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F--~~~~wvs~~~~------~--------- 123 (221)
.-..++|+|++|+|||||...+..-.+.. ..| ....+|.|.++ +
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 34789999999999999999886421110 011 12234433322 1
Q ss_pred ---------HHHHHHHHHHhccCC----cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhc
Q 040890 124 ---------YVILDNILKIMMPQS----ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEAL 184 (221)
Q Consensus 124 ---------~~~~~~il~~l~~~~----~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l 184 (221)
.+....+++.++... ..|...+ .-++..-.+.+.|...+-+|+.|+-- +....-.+...+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLS-GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELS-GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HcCCChhHHHHHHHHHHHhcCChhhhccCCchhcC-HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 222344444444421 1122222 33444556888888999999999642 222333333333
Q ss_pred CCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 185 PDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 185 ~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
. ...|..||+.|++..+|..|. +++.|+
T Consensus 189 ~-~~~g~tii~VTHd~~lA~~~d----r~i~l~ 216 (226)
T COG1136 189 N-KERGKTIIMVTHDPELAKYAD----RVIELK 216 (226)
T ss_pred H-HhcCCEEEEEcCCHHHHHhCC----EEEEEe
Confidence 2 234788999999999999874 566654
No 41
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.5e-06 Score=77.51 Aligned_cols=151 Identities=14% Similarity=0.037 Sum_probs=81.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC---CeEEEEeCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF---HCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wvs~~~~~~~~~~~il~~ 133 (221)
-.++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-.... .|... .-...+...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--------~sC~~i~~g 85 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--------SSCVEIAQG 85 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--------hHHHHHhcC
Confidence 4678999999999999887643 23445789999999999999988742111110 11000 000000000
Q ss_pred hc-----cCCcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC-hHHH
Q 040890 134 MM-----PQSALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS-NEIF 203 (221)
Q Consensus 134 l~-----~~~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va 203 (221)
.. ..... .... +..++.+.+... ..+++-++|||++. +...++.|+..+-......++|++|.+ ..+.
T Consensus 86 ~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 86 RFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred CCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 00000 0000 223333333221 24677799999997 567888888887654556666665543 4443
Q ss_pred hhccCCCCceEecccC
Q 040890 204 RFCRLDNDLMFTLILF 219 (221)
Q Consensus 204 ~~~~~~~~~v~~l~~~ 219 (221)
..+-+ -..+|+++.+
T Consensus 164 ~TIlS-RCq~f~fkpL 178 (944)
T PRK14949 164 VTVLS-RCLQFNLKSL 178 (944)
T ss_pred HHHHH-hheEEeCCCC
Confidence 23221 2345666654
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.2e-06 Score=73.54 Aligned_cols=154 Identities=12% Similarity=-0.010 Sum_probs=81.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCC--CCeEEEEeCcCChHHHHHHHHHHh
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY--FHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
-.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...-... +.. +.. ..+ .+.+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p-Cg~--C~s----C~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP-CNE--CTS----CLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc-cCC--CcH----HHHHHccC
Confidence 4578999999999999988754 2345789999999999999998773211110 000 000 000 11111111
Q ss_pred ccCC---cchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEE-EEcCChHHHhhc
Q 040890 135 MPQS---ALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVL-AMLTSNEIFRFC 206 (221)
Q Consensus 135 ~~~~---~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~va~~~ 206 (221)
...- +...+... +..++.+.+... ..++.-++|+|++. +...++.|+..+-.......+| .||....+...+
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 0000 00000011 233333333322 24566699999997 5678888877776544455544 444444443333
Q ss_pred cCCCCceEecccC
Q 040890 207 RLDNDLMFTLILF 219 (221)
Q Consensus 207 ~~~~~~v~~l~~~ 219 (221)
.+ -...|.++.+
T Consensus 169 ~S-RCq~~~f~~l 180 (484)
T PRK14956 169 LS-RCQDFIFKKV 180 (484)
T ss_pred Hh-hhheeeecCC
Confidence 22 2235555544
No 43
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.31 E-value=1.3e-05 Score=74.85 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=88.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~ 133 (221)
..+.|-|. .|.+.|.... +.+++.|..|+|.|||||+..... ... .=..+.|. ..+.++..++..++..
T Consensus 18 ~~~~v~R~----rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccH----HHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHH
Confidence 44455554 5666666543 589999999999999999988765 222 22467899 7778888999999888
Q ss_pred hccCCcc--------hhcccC-CHHHHHHHHHHHhC--CceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 134 MMPQSAL--------REIMGK-GFRQRKTALHDYLK--NKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 134 l~~~~~~--------~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
+....+. ...... +...+...+..-|. .+++++||||.- +..--..+...+....++-..|||||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 8742111 001111 45555555555553 468999999975 333333333333444567889999997
Q ss_pred hH
Q 040890 200 NE 201 (221)
Q Consensus 200 ~~ 201 (221)
.-
T Consensus 170 rP 171 (894)
T COG2909 170 RP 171 (894)
T ss_pred CC
Confidence 53
No 44
>PRK08116 hypothetical protein; Validated
Probab=98.31 E-value=4.3e-06 Score=69.68 Aligned_cols=102 Identities=15% Similarity=0.065 Sum_probs=55.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKN 161 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~ 161 (221)
.-+.++|..|+|||.||.++++. ....-...+++ +..+++..+......... .+...+. +.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~----~~~~ll~~i~~~~~~~~~------~~~~~~~----~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFV----NFPQLLNRIKSTYKSSGK------EDENEII----RSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEE----EHHHHHHHHHHHHhcccc------ccHHHHH----HHhcC
Confidence 35789999999999999999984 32222234444 344455555544432110 0222333 33332
Q ss_pred ceEEEEEeCCC--ChHHHHH--HhhhcCC-CCCCeEEEEEcCCh
Q 040890 162 KRYLIVLEDVL--TNEVRKY--LGEALPD-RHNGSRVLAMLTSN 200 (221)
Q Consensus 162 kr~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~IivTTR~~ 200 (221)
- =||||||+. ....|.. |...+.. -..|..+||||...
T Consensus 179 ~-dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 A-DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 2 389999994 3333422 2222211 13456688988743
No 45
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=9.9e-06 Score=68.65 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=38.4
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+++.++.|..++..+. ...+.++|+.|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999987643 345789999999999999998873
No 46
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=6.6e-06 Score=76.16 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=38.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4679999999999999988754 245678899999999999998876
No 47
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.30 E-value=8.9e-06 Score=69.12 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=39.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.++..+.+..++..+. -..++.++|++|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4678999999999999987643 3567778999999999999999873
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=4.5e-06 Score=78.34 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=34.6
Q ss_pred CCceeeehhhHH---HHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLK---ELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-++++|.+..+. .|.+.+..+ ....+.++|++|+||||||+.+.+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899888774 455555553 355678999999999999999998
No 49
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.29 E-value=7.4e-06 Score=67.46 Aligned_cols=127 Identities=12% Similarity=0.108 Sum_probs=75.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC-------------------------------CCCCeEE-------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK-------------------------------SYFHCHA------------- 115 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------------------~~F~~~~------------- 115 (221)
.-.+++|.|+.|+|||||.+.+..-...+ ..|...+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 45889999999999999999998622110 0111111
Q ss_pred EEe-CcCChHHHHHHHHHHhccCCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCC
Q 040890 116 WVS-ANLDPYVILDNILKIMMPQSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPD 186 (221)
Q Consensus 116 wvs-~~~~~~~~~~~il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~ 186 (221)
|++ ....-.+...+.++.++...-.....+. .-+...-.+...|..+.-+|+||.-- +.-..-++...+.
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~- 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN- 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-
Confidence 110 0011223455556666553222222232 44455567888888899999999643 2222222333333
Q ss_pred CCCCeEEEEEcCChHHHhhcc
Q 040890 187 RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~ 207 (221)
...|..||+++++-+.|...+
T Consensus 186 ~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HhcCCEEEEEecCHHHHHHhC
Confidence 245778999999999998886
No 50
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1e-05 Score=73.58 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=79.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCC------CCCCCeEEEE----eCcCChHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV------KSYFHCHAWV----SANLDPYVI 126 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~wv----s~~~~~~~~ 126 (221)
-.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...- ..+..|.... ....++..+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 4578999999999999887643 2455678999999999999988762110 0011110000 000010000
Q ss_pred HHHHHHHhccCCcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEc-CChH
Q 040890 127 LDNILKIMMPQSALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAML-TSNE 201 (221)
Q Consensus 127 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTT-R~~~ 201 (221)
.... .... +...+.+.+... ..+++-++|+|++. +...++.|+..+-.....+.+|++| ....
T Consensus 94 --------daas----~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 94 --------DAAS----RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHK 161 (546)
T ss_pred --------eccc----ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 0000 0001 223333333322 24566799999997 5667888888887655566566544 4333
Q ss_pred HHhhccCCCCceEecccC
Q 040890 202 IFRFCRLDNDLMFTLILF 219 (221)
Q Consensus 202 va~~~~~~~~~v~~l~~~ 219 (221)
+...+.+ -..++++...
T Consensus 162 il~tI~S-Rc~~~~f~~L 178 (546)
T PRK14957 162 IPVTILS-RCIQLHLKHI 178 (546)
T ss_pred hhhhHHH-heeeEEeCCC
Confidence 3322221 2345555544
No 51
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=3.6e-05 Score=63.35 Aligned_cols=137 Identities=8% Similarity=0.029 Sum_probs=74.2
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eC----------cCChHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SA----------NLDPYV 125 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~----------~~~~~~ 125 (221)
...+.++......+..+|.+ ..++.++|+.|+|||+||.++..+.-....|+..+-. +. +-+.++
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 34567788889999998865 2488999999999999998766532222335444433 11 112222
Q ss_pred HHHHHHHHhccCCcchhcccCCHHHHHHH-----------HHHHhCCceE---EEEEeCCCChHHHHHHhhhcCCCCCCe
Q 040890 126 ILDNILKIMMPQSALREIMGKGFRQRKTA-----------LHDYLKNKRY---LIVLEDVLTNEVRKYLGEALPDRHNGS 191 (221)
Q Consensus 126 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----------l~~~L~~kr~---LlVlDdv~~~~~~~~l~~~l~~~~~gs 191 (221)
-+.-.+..+...-.. .- +...+... -..+++++.+ +||+|...+... ..+...+-..+.+|
T Consensus 130 K~~p~~~pi~D~L~~---~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~s 204 (262)
T PRK10536 130 KFAPYFRPVYDVLVR---RL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHHHHHHH---Hh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCC
Confidence 221111111110000 00 00111111 1236677765 999999985433 33333344446789
Q ss_pred EEEEEcCChHH
Q 040890 192 RVLAMLTSNEI 202 (221)
Q Consensus 192 ~IivTTR~~~v 202 (221)
++|+|--..++
T Consensus 205 k~v~~GD~~Qi 215 (262)
T PRK10536 205 TVIVNGDITQC 215 (262)
T ss_pred EEEEeCChhhc
Confidence 99998554433
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=3.3e-06 Score=73.39 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=36.9
Q ss_pred CceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.++.|+++.+++|.+.+... -...+-+.++|++|+|||+||+.+++.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999998877421 022455889999999999999999983
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=98.28 E-value=9.1e-06 Score=69.38 Aligned_cols=122 Identities=10% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEE-E--eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAW-V--SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v--s~~~~~~~~~~~il~~ 133 (221)
-.+++|-++.++.|..++..+. ...+.++|++|+||||+|..+.+.. ....|...+. + +...+ .+.++++++.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~-~~~vr~~i~~ 87 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRG-IDVVRNKIKM 87 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeeccccccc-HHHHHHHHHH
Confidence 4568898888888888776543 3446789999999999999887731 1122322111 1 21111 1223333222
Q ss_pred hccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 134 MMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 134 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
+..... ..-.++.-+++||++.. ....+.|...+......+++++++..
T Consensus 88 ~~~~~~-----------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 88 FAQKKV-----------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHhccc-----------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 211000 00024567999999973 44555565555433445677776643
No 54
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.6e-05 Score=69.98 Aligned_cols=46 Identities=13% Similarity=-0.096 Sum_probs=37.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+..++.|..++.++. -...+.++|+.|+||||+|..+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 4678999988898988887654 234577899999999999988765
No 55
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.9e-05 Score=71.81 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=37.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999988754 234567899999999999998865
No 56
>PRK08727 hypothetical protein; Validated
Probab=98.26 E-value=9.6e-06 Score=66.21 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+.++|..|+|||+|++.+++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998873
No 57
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.26 E-value=1.1e-05 Score=66.14 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=77.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCC-----C------CCC---CeEEEEeC--cC------Ch---------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYV-----K------SYF---HCHAWVSA--NL------DP--------------- 123 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~------~~F---~~~~wvs~--~~------~~--------------- 123 (221)
-.+++|+|+.|.|||||.+.+..-.+- . ..+ ....||+| .+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 478999999999999999999872110 0 001 24556622 11 11
Q ss_pred -------HHHHHHHHHHhccCCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCC
Q 040890 124 -------YVILDNILKIMMPQSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRH 188 (221)
Q Consensus 124 -------~~~~~~il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~ 188 (221)
.+...+.++.++...-....+.. .-+...-.+.+.|..+.=||+||.-- +...+-++...+.+.
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 23444555555443221122232 33444567889999999999999643 345555666666533
Q ss_pred CCeEEEEEcCChHHHhhcc
Q 040890 189 NGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 189 ~gs~IivTTR~~~va~~~~ 207 (221)
|..||++|.+-.......
T Consensus 189 -g~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 189 -GKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred -CCEEEEEeCCcHHhHhhC
Confidence 889999999887766653
No 58
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.26 E-value=1.2e-05 Score=58.58 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+.|+|++|+||||+|+.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 357889999999999999999883
No 59
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=2.2e-05 Score=63.84 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+.|+|+.|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 466899999999999999988873
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.23 E-value=9.2e-06 Score=65.42 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=36.6
Q ss_pred CCCceeeehhhHHHHHHHHh---cCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC
Q 040890 56 SKERCVMLLEDLKELLNQLI---EGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF 111 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 111 (221)
.-.++||.++-++.+.-++. ...+.+..+..+|++|+||||||..+.+ .....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 46789999988888765553 2334577888999999999999999998 444444
No 61
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.22 E-value=1.4e-05 Score=65.76 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=78.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCc------CChHHHHHHHHHHhccCCc----chhcccCCH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SAN------LDPYVILDNILKIMMPQSA----LREIMGKGF 148 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~------~~~~~~~~~il~~l~~~~~----~~~~~~~~~ 148 (221)
...+++++|.+|+|||||++.+.. -.+ .-...+++ .++ ....+...+++..++...+ .|...++.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG- 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG- 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch-
Confidence 457899999999999999999998 232 23344555 222 2234556677777665332 12223332
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC------hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 149 RQRKTALHDYLKNKRYLIVLEDVLT------NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
+...-.+.+.|.-+.-|+|+|..-+ ..+.-.|...+. ...|-..+..|.+-.|+++++.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 2223357888899999999997542 122222333333 2346778999999999999973
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.3e-05 Score=73.39 Aligned_cols=46 Identities=13% Similarity=0.004 Sum_probs=38.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999887653 245677899999999999998866
No 63
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.21 E-value=1.2e-05 Score=61.98 Aligned_cols=123 Identities=14% Similarity=0.063 Sum_probs=69.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCC---hHHHHHHHHHHhccCCcchhcccCCHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLD---PYVILDNILKIMMPQSALREIMGKGFRQRKTALH 156 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 156 (221)
-.+++|.|..|+|||||.+.+... .......+++ ..... ..+..+ ..++- .++ .+..+ ...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~---~~q-LS~G~-~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAM---VYQ-LSVGE-RQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEE---EEe-cCHHH-HHHHHHH
Confidence 478999999999999999999873 2334556666 22211 111111 11111 000 11123 3334466
Q ss_pred HHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 157 DYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
..+-.++-+++||+.- +......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~---d~~~~l~ 156 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIA---DRVTVLR 156 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEE
Confidence 6666778889999875 33333333333321 123667999999987655543 3555553
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.8e-05 Score=70.43 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=73.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-...+. ..+++.-...+.|...-..
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-----ANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----cccCCCCHHHHHHhcCCCc
Confidence 4578999999999999997754 234567899999999999988776321111110 0000000011111000000
Q ss_pred C---CcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 137 Q---SALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 137 ~---~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
. -+....... +..++.+.+.-. ..++.-++|+|++. +....+.|...+......+++|++|.+
T Consensus 89 d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 89 DLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred eEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 0 000000000 222222222211 13566689999997 567788888777665556777766543
No 65
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.20 E-value=1.9e-05 Score=61.73 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=68.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCc-CC--CC---CC--CeEEEEeCcCChHHHHHHHHHHhccCC---cc-hhcccCC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSD-YV--KS---YF--HCHAWVSANLDPYVILDNILKIMMPQS---AL-REIMGKG 147 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~-~~--~~---~F--~~~~wvs~~~~~~~~~~~il~~l~~~~---~~-~~~~~~~ 147 (221)
.-.+++|+|+.|+|||||.+.+..+. ++ .. .| ....|+.+ .+.+..++... .. +...+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 35789999999999999999886321 11 10 11 01233322 34555555321 11 1111113
Q ss_pred HHHHHHHHHHHhCCc--eEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 148 FRQRKTALHDYLKNK--RYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 148 ~~~l~~~l~~~L~~k--r~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
..+.+ .+...|..+ .-+++||+.- +....+.+...+.. ...|..||++|++.+.+..| ++++.|.
T Consensus 92 q~qrl-~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~----d~i~~l~ 162 (176)
T cd03238 92 ELQRV-KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSA----DWIIDFG 162 (176)
T ss_pred HHHHH-HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC----CEEEEEC
Confidence 33333 455566566 7788889864 33334444333322 12467799999998877542 4666664
No 66
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=1.9e-05 Score=57.77 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 040890 84 VAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~ 104 (221)
|.|+|++|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999984
No 67
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.8e-05 Score=71.66 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=37.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999998999999888754 245668899999999999998854
No 68
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.18 E-value=4e-05 Score=61.21 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=80.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---------------------eCcCC----------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---------------------SANLD---------------- 122 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------------s~~~~---------------- 122 (221)
.-.|++|+|++|+|||||.+.+..-+... ...+|+ .|.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 35789999999999999999987633332 233444 12222
Q ss_pred ---------hHHHHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC-
Q 040890 123 ---------PYVILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD- 186 (221)
Q Consensus 123 ---------~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~- 186 (221)
.++...++|..++.... .|...+ .-++..-.+.+.|.=++-++.||..-+ ++.-.++...+.+
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLS-GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLS-GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccC-cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 23334445554444221 122222 334445568888988999999999863 4433333333222
Q ss_pred CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 187 RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...|-..|+.|+.-..|+.+. ++|+-|
T Consensus 183 A~eGmTMivVTHEM~FAr~Va---drviFm 209 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAREVA---DRVIFM 209 (240)
T ss_pred HHcCCeEEEEechhHHHHHhh---heEEEe
Confidence 346788999999999999985 455444
No 69
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=5e-05 Score=65.45 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=38.0
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999887644 245678899999999999987765
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.16 E-value=5.3e-05 Score=59.39 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=75.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-----------------------eCcC---------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-----------------------SANL--------------- 121 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-----------------------s~~~--------------- 121 (221)
.-..+.++|++|.|||||.+.+|...+... ..+|+ .|++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 357889999999999999999997543211 12222 1111
Q ss_pred ---------ChHHHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeC----CCChHHHHHHhhhcC
Q 040890 122 ---------DPYVILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLED----VLTNEVRKYLGEALP 185 (221)
Q Consensus 122 ---------~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDd----v~~~~~~~~l~~~l~ 185 (221)
...+-..+.+...+... ..|...+ .-++.--.+.+.+-+++-+|+-|. ++....|+-+. .|.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS-GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS-GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccC-chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 12222333333333322 1222222 333444567788889999999994 54455565442 222
Q ss_pred -CCCCCeEEEEEcCChHHHhhcc
Q 040890 186 -DRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 186 -~~~~gs~IivTTR~~~va~~~~ 207 (221)
-+..|+.||+.|.+.++...+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 2467999999999999999886
No 71
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.15 E-value=3.1e-05 Score=68.15 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=62.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKN 161 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~ 161 (221)
++.|.|+.++|||||++.+.. ...+. .+++ ..+...... ...+....+...-..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~--------------------~l~d~~~~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRI--------------------ELLDLLRAYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchh--------------------hHHHHHHHHHHhhcc
Confidence 999999999999999977665 22222 4444 222211100 011111111111122
Q ss_pred ceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 162 KRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 162 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
++.+|+||.|.....|......+.+..+. +|++|+-+.......
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~ 137 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKE 137 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccc
Confidence 78899999999999999999999877766 899998766555443
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.2e-05 Score=72.59 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=81.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMM 135 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~ 135 (221)
-.++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-.. .. ..++..-...+.|...-.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~------~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCET------GITATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhcc------CCCCCCCCCCHHHHHHHcCCC
Confidence 5678999999999999887754 234467899999999999998876311100 01 001111111111111000
Q ss_pred cC---CcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC-hHHHhhcc
Q 040890 136 PQ---SALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS-NEIFRFCR 207 (221)
Q Consensus 136 ~~---~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va~~~~ 207 (221)
.. -+....... +..++.+.+... ..+++-++|+|++. +....+.|+..+-......++|++|.+ ..+...+.
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 00 000000011 233333333222 24667799999997 567788887777654555655555544 44433322
Q ss_pred CCCCceEecccC
Q 040890 208 LDNDLMFTLILF 219 (221)
Q Consensus 208 ~~~~~v~~l~~~ 219 (221)
+ -...|+++.+
T Consensus 168 S-RC~~~~f~~L 178 (647)
T PRK07994 168 S-RCLQFHLKAL 178 (647)
T ss_pred h-hheEeeCCCC
Confidence 1 2345555544
No 73
>PRK12377 putative replication protein; Provisional
Probab=98.14 E-value=5.9e-05 Score=62.14 Aligned_cols=73 Identities=15% Similarity=0.010 Sum_probs=43.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLK 160 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 160 (221)
..-+.++|..|+|||+||..+.+. .......+.++ +..+++..|-....... ....+... +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i----~~~~l~~~l~~~~~~~~--------~~~~~l~~----l- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVV----TVPDVMSRLHESYDNGQ--------SGEKFLQE----L- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEE----EHHHHHHHHHHHHhccc--------hHHHHHHH----h-
Confidence 457889999999999999999984 32232334454 23345555444332110 22222222 2
Q ss_pred CceEEEEEeCCC
Q 040890 161 NKRYLIVLEDVL 172 (221)
Q Consensus 161 ~kr~LlVlDdv~ 172 (221)
.+--||||||+-
T Consensus 162 ~~~dLLiIDDlg 173 (248)
T PRK12377 162 CKVDLLVLDEIG 173 (248)
T ss_pred cCCCEEEEcCCC
Confidence 456799999994
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.2e-05 Score=72.16 Aligned_cols=153 Identities=9% Similarity=-0.048 Sum_probs=81.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCC--C-CeEEEEeCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY--F-HCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F-~~~~wvs~~~~~~~~~~~il~~ 133 (221)
-.++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+...-... . .|... .-.+.|...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C--------~sC~~~~~g 84 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC--------DSCVALAPG 84 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc--------HHHHHHHcC
Confidence 4578999999999999988754 2345778999999999999988653211110 0 11000 000111100
Q ss_pred hccCC-----cchhcccC-CHHHHHHHHHH-HhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEc-CChHHH
Q 040890 134 MMPQS-----ALREIMGK-GFRQRKTALHD-YLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAML-TSNEIF 203 (221)
Q Consensus 134 l~~~~-----~~~~~~~~-~~~~l~~~l~~-~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va 203 (221)
..... +....... +..++.+.+.- -..++.-++|||++. +...++.|+..+..-...+.+|++| ..+.+.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00000 00000000 22222222211 124566688999997 5678888888887655566666555 444454
Q ss_pred hhccCCCCceEecccC
Q 040890 204 RFCRLDNDLMFTLILF 219 (221)
Q Consensus 204 ~~~~~~~~~v~~l~~~ 219 (221)
..+.+ -.++|++...
T Consensus 165 ~TIrS-Rc~~v~F~~l 179 (824)
T PRK07764 165 GTIRS-RTHHYPFRLV 179 (824)
T ss_pred HHHHh-heeEEEeeCC
Confidence 44332 3346666544
No 75
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=3.3e-05 Score=60.00 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=68.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhcc--CCc-------chhcc-cCCHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMP--QSA-------LREIM-GKGFR 149 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~--~~~-------~~~~~-~~~~~ 149 (221)
-.+++|+|..|+|||||++.+.... ......+++ ........ ..+...+.- +.. ..++. -+.-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch--HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 5789999999999999999998732 123344444 11111000 011111110 000 00000 01122
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
...-.+...|..++-++++|+.- +......+...+.. ...|..||++|++...+..++ ++++.|.
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~---d~i~~l~ 169 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC---DRVAILN 169 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC---CEEEEEe
Confidence 23335677777888999999875 33333333333321 123677999999988777654 4566654
No 76
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.12 E-value=7.4e-05 Score=62.32 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=77.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhcc--CCcchh
Q 040890 66 DLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMP--QSALRE 142 (221)
Q Consensus 66 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~--~~~~~~ 142 (221)
..+.++..|.... ...-++|.|+.|+|||||.+.+.. .+. .....+++ .......+-..++...... +.....
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecchhHHHHHHHhcccccccccc
Confidence 4455555555432 356789999999999999999988 333 23455666 3333221222344333221 111101
Q ss_pred cccC-CHHHHHHHHHHHh-CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 143 IMGK-GFRQRKTALHDYL-KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 143 ~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
.++. +...-...+...+ ...+-++++|.+...+.+..+...+. .|..+|+||.+..+...+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDLY 235 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHHH
Confidence 1111 1111122233333 25788999999988777777766653 477899999988886554
No 77
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.7e-05 Score=65.68 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+...+.+.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999987643 345788999999999999998866
No 78
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=9.8e-05 Score=58.06 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=35.8
Q ss_pred CceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh-HHHhhccCCCCceEecccC
Q 040890 161 NKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN-EIFRFCRLDNDLMFTLILF 219 (221)
Q Consensus 161 ~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~v~~l~~~ 219 (221)
+.+-++|+|++. +...++.|...+......+.+|++|++. .+...+.+ -..++++.++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~ 155 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPL 155 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCC
Confidence 556789999986 4566788887776655567777777643 33332222 2345665554
No 79
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.12 E-value=3.9e-05 Score=59.84 Aligned_cols=127 Identities=9% Similarity=0.011 Sum_probs=66.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcc------------hhcccCC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSAL------------REIMGKG 147 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~------------~~~~~~~ 147 (221)
-.+++|.|..|+|||||++.+..... .-...+++ ... .......+...+.--.+. +...+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~--~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS-~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVP--VSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS-G 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEE--HHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC-H
Confidence 47899999999999999999987422 12233444 211 111101111111100000 00111 1
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 148 FRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 148 ~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-+...-.+...+-.++-+++||+.. +....+.+...+.....+..||++|++.+....| ++++.|.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----d~~~~l~ 170 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM----DKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC----CEEEEEE
Confidence 2233344666677788899999875 2333333322222112367799999988877532 4566553
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.3e-05 Score=69.35 Aligned_cols=155 Identities=11% Similarity=-0.051 Sum_probs=78.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-..... ..+.+.-.....|......
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~-----~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT-----SDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC-----CCCccccHHHHHHhccCCC
Confidence 4678999999998888887654 234678999999999999988764110000000 0000000011111110000
Q ss_pred CC---cchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEc-CChHHHhhccC
Q 040890 137 QS---ALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAML-TSNEIFRFCRL 208 (221)
Q Consensus 137 ~~---~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTT-R~~~va~~~~~ 208 (221)
.. +....... +..++.+..... ..++.-++|+|++. +....+.|...+....+.+.+|++| ..+.+...+.+
T Consensus 86 Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred CEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 00 00000000 222222222111 13566689999986 4567888888877655667666655 44455443332
Q ss_pred CCCceEeccc
Q 040890 209 DNDLMFTLIL 218 (221)
Q Consensus 209 ~~~~v~~l~~ 218 (221)
-..++++..
T Consensus 166 -Rc~~~~f~~ 174 (491)
T PRK14964 166 -RCQRFDLQK 174 (491)
T ss_pred -hheeeeccc
Confidence 223444443
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=5.5e-05 Score=69.88 Aligned_cols=46 Identities=11% Similarity=-0.158 Sum_probs=37.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+..++.|.+.+.++. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999998887643 234577899999999999987765
No 82
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.11 E-value=6.1e-05 Score=56.84 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=65.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
-.+++|+|..|+|||||++.+..... .....+|+ .. ..+.- .++ .+.... ..-.+...|
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~------------~~i~~---~~~-lS~G~~-~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST------------VKIGY---FEQ-LSGGEK-MRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe------------EEEEE---Ecc-CCHHHH-HHHHHHHHH
Confidence 47889999999999999999987422 23444554 11 00000 000 011222 233456666
Q ss_pred CCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 160 KNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 160 ~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
..+.-+++||+.- +......+...+... +..||++|++.+.+...+ ++++.|.
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~---d~v~~l~ 141 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVA---TKIIELE 141 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC---CEEEEEe
Confidence 6778899999865 344444444444322 246899998887776553 4566554
No 83
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.10 E-value=4.7e-05 Score=61.00 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|..++-+++||+-- |......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 141 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~---d~i~~l~ 206 (213)
T cd03235 141 VLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYF---DRVLLLN 206 (213)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEc
Confidence 34555666788899999865 33333333333322 124677999999988776654 4555553
No 84
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.10 E-value=9.6e-06 Score=66.23 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=28.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV 117 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 117 (221)
--++|+|.+|+|||||...++. .....|.+.+++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEE
Confidence 3567899999999999998887 577788777766
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=2.9e-05 Score=63.50 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+.|+|+.|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999988873
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7.3e-05 Score=65.62 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=36.7
Q ss_pred CceeeehhhHHHHHHHHhcCCC--------CceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPP--------QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|-+.-++.|.+.+..+.. -...+.++|+.|+|||++|..+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999998876431 245677999999999999988754
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.09 E-value=5.1e-05 Score=61.89 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCceeeehhhHHHHHHHH---hcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEE-EEeCcCChHHHHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQL---IEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHA-WVSANLDPYVILDNIL 131 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wvs~~~~~~~~~~~il 131 (221)
..++++|.+...+.|++=. ..+. ...-+.++|..|+|||+|++.+.+. ....= .++ =|.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~--y~~~G-LRlIev~k------------ 88 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE--YADQG-LRLIEVSK------------ 88 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH--HhhcC-ceEEEECH------------
Confidence 3568999999998886543 3333 3455667999999999999998873 22110 111 0100
Q ss_pred HHhccCCcchhcccC-CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC----CCCeEEEEEcCChHH
Q 040890 132 KIMMPQSALREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR----HNGSRVLAMLTSNEI 202 (221)
Q Consensus 132 ~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~----~~gs~IivTTR~~~v 202 (221)
.+. +...+.+.++. +..||+|++||+. +...+..|+..|-.+ .....|..||-....
T Consensus 89 ------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 ------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 011 44444545443 4579999999996 456677777766532 233455556544433
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=6.3e-05 Score=60.13 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=36.2
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.+...|..++-+++||+-- |......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~ 202 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELC---DRVLLLN 202 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhh---hEEEEEe
Confidence 4556666677799999865 23333333332221 123677999999988776654 3455443
No 89
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.07 E-value=1.8e-05 Score=67.67 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHD 157 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 157 (221)
...-+.+||++|+||||||+.+....+-.. ..+| |....-.+-+++|.++... ..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------------~~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------------EK 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------------HH
Confidence 356667899999999999999998543332 2344 4444444555555554432 11
Q ss_pred HhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEE--EcCCh
Q 040890 158 YLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLA--MLTSN 200 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~ 200 (221)
.+..+|-+|++|.|. +..+-+. .||.-.+|+-++| ||-|.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCC
Confidence 245788999999995 4444443 3555566775555 55554
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.06 E-value=6.7e-05 Score=60.40 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..++-+++||+.- +....+.+...+..-..+..||++|++.+.+..++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 199 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALC 199 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhc
Confidence 34566666788899999875 33333333333322122367999999988776654
No 91
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.06 E-value=1.1e-05 Score=64.18 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=66.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChH-HHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPY-VILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
.++.|+|+.|+||||++..+.. ....+....+++ ..+.... .-...+..+. ....+.....+.++..|
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~--------~vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHESKRSLINQR--------EVGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccCccceeeec--------ccCCCccCHHHHHHHHh
Confidence 4688999999999999998777 333334445555 2221100 0000011000 00112234556778888
Q ss_pred CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 160 KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 160 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
+...=+|++|.+.+.+.+..+.... ..|..++.|+...+++..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 7778899999998877766554443 235568888887766544
No 92
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=7.2e-05 Score=68.93 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=39.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999988754 2446778999999999999988763
No 93
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=6.2e-05 Score=58.33 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=67.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcC---ChHHHHHHHHHHhcc--CCcc------hhcccCC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANL---DPYVILDNILKIMMP--QSAL------REIMGKG 147 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~---~~~~~~~~il~~l~~--~~~~------~~~~~~~ 147 (221)
.-.+++|+|+.|+|||||.+.+..-. ......+++ ..+. ..... ...+.- .... .++.-+.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 35789999999999999999998832 223344444 2111 11111 111110 0000 0000111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 148 FRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 148 ~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-+...-.+...|..+.-+++||+-. +......+...+..-..+..||++|++.+.+..| ++++.|.
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----d~~~~l~ 168 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDA----DRIIVLD 168 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC----CEEEEEc
Confidence 1222234666677788899999875 3333333333332112256799999988887653 4566554
No 94
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.05 E-value=6.2e-05 Score=58.90 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=60.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--------eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--------SANLDPYVILDNILKIMMPQSALREIMGKGFRQRK 152 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--------s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~ 152 (221)
-.+++|+|+.|+|||||++.+..... .....+++ .+... .+....+ .
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~---------------------LSgGq~q-r 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID---------------------LSGGELQ-R 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC---------------------CCHHHHH-H
Confidence 57899999999999999999987322 22333333 11111 1112233 3
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..+.-+++||+-- +....+.+...+.. ...+..||++|++......++
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 34566666778899999864 33333333333321 112356888998887776553
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.04 E-value=2.8e-05 Score=62.91 Aligned_cols=111 Identities=10% Similarity=0.126 Sum_probs=61.4
Q ss_pred HHHHHHhc-CCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCC
Q 040890 69 ELLNQLIE-GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKG 147 (221)
Q Consensus 69 ~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 147 (221)
.....+.. .+.....+.|+|..|+|||.|.+++++.......=..++++ +..++...+...+... .
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~----~~~~f~~~~~~~~~~~---------~ 87 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL----SAEEFIREFADALRDG---------E 87 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE----EHHHHHHHHHHHHHTT---------S
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee----cHHHHHHHHHHHHHcc---------c
Confidence 33444433 33345568899999999999999998832111111123344 3445555555555331 2
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHH----HhhhcCCCCCCeEEEEEcCC
Q 040890 148 FRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKY----LGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 148 ~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~----l~~~l~~~~~gs~IivTTR~ 199 (221)
. ..+.+.++ .-=+|++||+.. ...|.. +...+. ..|.+||+|+..
T Consensus 88 ~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~ 139 (219)
T PF00308_consen 88 I----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDR 139 (219)
T ss_dssp H----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS
T ss_pred c----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCC
Confidence 2 23334444 345889999973 233333 222222 346789999853
No 96
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=9e-05 Score=59.27 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
..-.+...|..++-+++||+-- +...-+.+...+.....+..||++|++.+.+..++ ++++.|.
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~---d~i~~l~ 203 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC---NQVAVLN 203 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC---CEEEEEE
Confidence 3445666777788899999764 22222223222221112356999999988776654 4565553
No 97
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.03 E-value=0.00015 Score=56.02 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=67.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCC---CC---eEEEEeCcCCh--HHHHHHHHHHhccCCcchhcccCCHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---FH---CHAWVSANLDP--YVILDNILKIMMPQSALREIMGKGFRQR 151 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~---~~~wvs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l 151 (221)
.-.+++|+|..|+|||||++.+......... ++ ...++.+.+.. ..+...+.-. . +...+.... .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~----~~~LS~G~~-~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--W----DDVLSGGEQ-Q 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc--C----CCCCCHHHH-H
Confidence 3578999999999999999999874222110 11 23344332211 1233332210 0 001111333 3
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|-.++-+++||+-- |......+...+... +..||++|++...+.. .++++.|.
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~----~d~i~~l~ 161 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF----HDRVLDLD 161 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh----CCEEEEEc
Confidence 344566666777888999764 333333333333221 4668999998877643 24566553
No 98
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=8e-05 Score=59.68 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|..++-+++||.-- |......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~v~~l~ 205 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALA---DRIAVMN 205 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhc---CEEEEEE
Confidence 34666666788899999865 23333333333322 123667999999887665554 4555553
No 99
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.03 E-value=9.7e-05 Score=58.87 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=69.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC---CC-----------CeEEEEeCcC-------ChH--------------H
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YF-----------HCHAWVSANL-------DPY--------------V 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F-----------~~~~wvs~~~-------~~~--------------~ 125 (221)
-.+++|+|+.|+|||||++.+..-..... .| ....++.+.+ ++. .
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~ 105 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNE 105 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHH
Confidence 57899999999999999999987321100 00 1123442221 111 1
Q ss_pred HHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcC
Q 040890 126 ILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 126 ~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR 198 (221)
-..++++.++.... .+...+..+.+. -.+...|..++-+++||+-- |......+...+.. ...|..||++|+
T Consensus 106 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qr-v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 106 QAETVLKDLDLYALKERHPLSLSGGQKQR-LAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred HHHHHHHHcCCchhcCCCchhCCHHHHHH-HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 12233333332211 111111133333 34556666778899999865 23333333333321 124667999999
Q ss_pred ChHHHhhccCCCCceEecc
Q 040890 199 SNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 199 ~~~va~~~~~~~~~v~~l~ 217 (221)
+.+.+..++ ++++.|.
T Consensus 185 ~~~~~~~~~---d~i~~l~ 200 (205)
T cd03226 185 DYEFLAKVC---DRVLLLA 200 (205)
T ss_pred CHHHHHHhC---CEEEEEE
Confidence 988776654 4566554
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=67.37 Aligned_cols=156 Identities=9% Similarity=-0.067 Sum_probs=81.2
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-..... ..+.+.-...+.|...-..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-----~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-----ATPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-----CCcccccHHHHHhhcccCC
Confidence 4578999999999999998754 234567899999999999998876311100000 0000000011111100000
Q ss_pred CC-----cchhcccC-CHHHHHHHHHHHh-CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEE-EcCChHHHhhc
Q 040890 137 QS-----ALREIMGK-GFRQRKTALHDYL-KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLA-MLTSNEIFRFC 206 (221)
Q Consensus 137 ~~-----~~~~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~va~~~ 206 (221)
.. +....... +..++.+.+...- .+++-++|+|++. +....+.|+..+........+|+ ||....+...+
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 00 00000001 2223333332211 3456688999986 56788888888876555565555 44445544443
Q ss_pred cCCCCceEecccC
Q 040890 207 RLDNDLMFTLILF 219 (221)
Q Consensus 207 ~~~~~~v~~l~~~ 219 (221)
.+ -..+|++..+
T Consensus 166 ~S-Rc~~~~F~~l 177 (584)
T PRK14952 166 RS-RTHHYPFRLL 177 (584)
T ss_pred HH-hceEEEeeCC
Confidence 32 2345555543
No 101
>PRK08181 transposase; Validated
Probab=98.02 E-value=9.4e-06 Score=67.62 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=40.5
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKN 161 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~ 161 (221)
.-+.++|++|+|||.||..+.+. .........|+ +..+++..+...... .........+ .
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~----~~~~L~~~l~~a~~~---------~~~~~~l~~l-----~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFT----RTTDLVQKLQVARRE---------LQLESAIAKL-----D 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeee----eHHHHHHHHHHHHhC---------CcHHHHHHHH-----h
Confidence 44889999999999999998763 22222223343 234455554332210 1333333332 2
Q ss_pred ceEEEEEeCCC
Q 040890 162 KRYLIVLEDVL 172 (221)
Q Consensus 162 kr~LlVlDdv~ 172 (221)
+--||||||+.
T Consensus 167 ~~dLLIIDDlg 177 (269)
T PRK08181 167 KFDLLILDDLA 177 (269)
T ss_pred cCCEEEEeccc
Confidence 34599999995
No 102
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.02 E-value=0.00013 Score=61.80 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999863
No 103
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.01 E-value=8.3e-05 Score=59.74 Aligned_cols=24 Identities=13% Similarity=0.010 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999863
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=8.3e-05 Score=65.28 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=36.8
Q ss_pred CceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.++.|+++.+++|.+.+... -...+-|.++|++|+|||+||+.+.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 35679999999998876321 123566889999999999999999883
No 105
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=5.7e-05 Score=69.66 Aligned_cols=137 Identities=10% Similarity=-0.040 Sum_probs=74.2
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.......+.. ...++.-...+.|......
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~----~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK----GRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCCccCHHHHHHhcCCCC
Confidence 4679999999999988887643 2455678999999999999988763211000000 0111112223333222111
Q ss_pred CCc--ch-hcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 137 QSA--LR-EIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 137 ~~~--~~-~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
..- .. ..... +..++.+.+... ..+++-++|+|++. +....+.|...+......+.+|++|.
T Consensus 90 d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 90 DVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred eEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 000 00 00011 222222222211 12456789999986 45667888777765555666666654
No 106
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.01 E-value=5.1e-05 Score=58.95 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=66.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCc---CChHHHHHHHHHHhccCCcch--------hcccC-C
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SAN---LDPYVILDNILKIMMPQSALR--------EIMGK-G 147 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~---~~~~~~~~~il~~l~~~~~~~--------~~~~~-~ 147 (221)
-.+++|+|+.|+|||||++.+.... ......+++ ..+ ...... ...+.-..+.+ ++.-+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 4689999999999999999998732 222334444 111 111111 11111100000 00011 2
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 148 FRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 148 ~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
+.+ .-.+...|..+.-+++||+.. +......+...+.. ...|..||++|++.+....| ++++.|.
T Consensus 101 ~~q-rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~----d~v~~l~ 169 (173)
T cd03246 101 QRQ-RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASA----DRILVLE 169 (173)
T ss_pred HHH-HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC----CEEEEEE
Confidence 333 334566666677789999875 33333333222221 12367799999998877542 4666664
No 107
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=3.6e-05 Score=60.07 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=68.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCC-hHHHHHHHHHHhccCCcch---------hcc---c
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLD-PYVILDNILKIMMPQSALR---------EIM---G 145 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~-~~~~~~~il~~l~~~~~~~---------~~~---~ 145 (221)
.-.+++|+|+.|+|||||++.+.... ......+.+ ..+.. ...-.......+.-..+.+ ++. -
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 35789999999999999999998732 223344444 21110 0000001111111100000 000 0
Q ss_pred CCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 146 KGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 146 ~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
+.-+...-.+...|..++-+++||+-- |......+...+.. ...|..||++|++.+....++ ++++.|.
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~ 175 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA---DRVVVLR 175 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEe
Confidence 111233344666677788899999764 33333333333321 122567999999888777553 4566654
No 108
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.00 E-value=0.00012 Score=58.73 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..++-+++||+-- |......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~---d~i~~l~ 212 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYR---HRTLTLS 212 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 345666677788899999765 22222333222221 123667999999988776654 4566553
No 109
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.99 E-value=0.00011 Score=60.41 Aligned_cols=133 Identities=12% Similarity=0.137 Sum_probs=70.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC--eEEEEeCc------CChHHHHH--------------HHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH--CHAWVSAN------LDPYVILD--------------NILKIMM 135 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wvs~~------~~~~~~~~--------------~il~~l~ 135 (221)
-.+++|+|..|+|||||++.+........ .++ ...++.+. .++.+.+. ++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 47899999999999999999987422111 111 22233211 12333222 2222222
Q ss_pred cCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccC
Q 040890 136 PQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 136 ~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~ 208 (221)
.......... +.-+...-.+...|..+.-+++||.-- +...-..+...+.. ...|..||++|++.+.+..++
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~- 183 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA- 183 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC-
Confidence 2110001111 122233345666777888999999865 22333333222221 123677999999988777654
Q ss_pred CCCceEec
Q 040890 209 DNDLMFTL 216 (221)
Q Consensus 209 ~~~~v~~l 216 (221)
++++.|
T Consensus 184 --d~i~~l 189 (246)
T cd03237 184 --DRLIVF 189 (246)
T ss_pred --CEEEEE
Confidence 345544
No 110
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.0002 Score=60.32 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+.++|++|+||||+|+.+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3477899999999999999966
No 111
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=6.2e-05 Score=62.42 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...-+.++|++|+||||+|+.+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH
Confidence 455678899999999999998876
No 112
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.98 E-value=0.00023 Score=58.52 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccC
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGK 146 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~ 146 (221)
+..+.+.......+...+.++|.+|+|||+||..+.+... ..-...+++ +..+++..+-...... +.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~i----t~~~l~~~l~~~~~~~-------~~ 151 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLII----TVADIMSAMKDTFSNS-------ET 151 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEE----EHHHHHHHHHHHHhhc-------cc
Confidence 3344444433222345678999999999999999988422 222233444 3344444443333210 00
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHHH--HhhhcCC-CCCCeEEEEEcC
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRKY--LGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~IivTTR 198 (221)
....+.+ .+. +.=||||||+.. ...|.. +...+.. -.....+||||-
T Consensus 152 ~~~~~l~----~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 152 SEEQLLN----DLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred cHHHHHH----Hhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 2233333 343 345899999963 344442 2112211 122334777775
No 113
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.98 E-value=0.00015 Score=61.37 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h----HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N----EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~----~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.++-+|+||.--+ . ..|+.|. .+. ..|..||+||++.+.+..++
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~-~~~--~~g~tvi~~sH~~~~~~~~~ 191 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIR-ALK--EEGVTILLTTHYMEEADKLC 191 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHH--hCCCEEEEECCCHHHHHHhC
Confidence 3356666777889999998652 2 2233332 332 23678999999998877654
No 114
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=7e-05 Score=70.85 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=37.2
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.++||+++++.+++.|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999887654 233458999999999999988773
No 115
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.97 E-value=0.00011 Score=58.71 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|..++-+++||+-- +......+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~---d~i~~l~ 208 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA---DRVIVLE 208 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 34555566677799999764 23333333332221 123677999999988777654 4566553
No 116
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.97 E-value=0.00016 Score=58.63 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 154 ALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.+...|-.++-+++||+--+ .. .++.|.. +. ..|..||++|++.+.+..++ ++++.|.
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~-~~--~~~~tiii~sH~~~~~~~~~---d~i~~l~ 216 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LL--KQGKTVILVSHDPSSIKRLC---DRALVLE 216 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HH--hCCCEEEEEeCCHHHHHHhC---CEEEEEE
Confidence 46677777889999998652 22 2333322 22 23567999999988776654 3455543
No 117
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.97 E-value=0.00015 Score=61.61 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=34.9
Q ss_pred HHHHHHhCCceEEEEEeCCCC---h----HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVLT---N----EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~~---~----~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+|+||.--+ . ..|+.|. .+. ..|..||+||++.+-+..++
T Consensus 147 l~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~-~l~--~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR-SLL--ARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred HHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHH--hCCCEEEEECCCHHHHHHhC
Confidence 346677778889999997652 2 3333333 332 34778999999988776654
No 118
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.96 E-value=0.00013 Score=60.16 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=67.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCC---CC---eEEEEeCcC--------ChHH-----------HHHHHHHHh
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---FH---CHAWVSANL--------DPYV-----------ILDNILKIM 134 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~---~~~wvs~~~--------~~~~-----------~~~~il~~l 134 (221)
.-.+++|+|..|+|||||++.+......... ++ ...++.+.+ +..+ -...+++.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHc
Confidence 3578999999999999999999874221110 11 123442221 1111 122233333
Q ss_pred ccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhc
Q 040890 135 MPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 135 ~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~ 206 (221)
+.... .+...+....+ .-.+...|-.++-+++||+.-+ ...-..+...+.. ...|..||++|++.+.+..+
T Consensus 109 gl~~~~~~~~~~LSgGq~q-rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 109 QAGHLIDAPMQKLSGGETQ-RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred CChHHHhCChhhCCHHHHH-HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 32111 01111112333 3345666667788999998752 2222333222221 12256789999888877655
Q ss_pred cCCCCceEec
Q 040890 207 RLDNDLMFTL 216 (221)
Q Consensus 207 ~~~~~~v~~l 216 (221)
+ ++++.|
T Consensus 188 ~---d~i~~l 194 (251)
T PRK09544 188 T---DEVLCL 194 (251)
T ss_pred C---CEEEEE
Confidence 4 345444
No 119
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.96 E-value=0.00012 Score=59.09 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.+...+-..+-+++||+.- +....+.+...+.. ...|..||++|++.+.+..++
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~ 191 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLA 191 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc
Confidence 4556666777899999865 33333333333321 123667999999988876654
No 120
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=0.00014 Score=58.57 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999863
No 121
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=0.00011 Score=59.66 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|-.+.-+++||+.- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~---d~i~~l 214 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC---DRVAVM 214 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 344555566677899999865 23333333333322 123678999999988776654 355554
No 122
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.00018 Score=58.44 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=72.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCC-------------C-----CCCCeEEEE----eCcCCh----HHH-------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYV-------------K-----SYFHCHAWV----SANLDP----YVI------- 126 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~-----~~F~~~~wv----s~~~~~----~~~------- 126 (221)
.-.+++|+|.+|+|||||++.+..-.+- . ..|...-.| ....++ .++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 3578999999999999999998752111 1 013223333 122222 222
Q ss_pred ---------HHHHHHHhccCCc----chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC-------hHHHHHHhhhcCC
Q 040890 127 ---------LDNILKIMMPQSA----LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT-------NEVRKYLGEALPD 186 (221)
Q Consensus 127 ---------~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~-------~~~~~~l~~~l~~ 186 (221)
..+++.+++.... .|...++... ..-.+.+.|.-+.-+||+|..-+ ...|+-|...-
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~-QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~-- 188 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQR-QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK-- 188 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHH-HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHH--
Confidence 2333333333211 1222222222 23357788888999999997642 24455443322
Q ss_pred CCCCeEEEEEcCChHHHhhccC
Q 040890 187 RHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~~ 208 (221)
..-+-.+|+.|.+..++.++|.
T Consensus 189 ~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 189 KERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HhcCceEEEEeCcHHHHHHHhh
Confidence 2345678999999999999984
No 123
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=0.00016 Score=58.32 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999874
No 124
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.95 E-value=9.4e-05 Score=57.91 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=65.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcC---ChH-----------------------HHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANL---DPY-----------------------VILDNILKI 133 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~---~~~-----------------------~~~~~il~~ 133 (221)
-.+++|+|..|+|||||++.+..-.. .....+++ ..+. +.. .+...+.-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 46889999999999999999987322 12233444 1111 000 111111000
Q ss_pred hccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCC
Q 040890 134 MMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLD 209 (221)
Q Consensus 134 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~ 209 (221)
.. .+..+ ...-.+...|-.++-+++||+-- +......+...+.. ...|..||++|++.+-+..++
T Consensus 103 ~~--------LS~G~-~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~-- 171 (182)
T cd03215 103 SL--------LSGGN-QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC-- 171 (182)
T ss_pred hh--------cCHHH-HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC--
Confidence 00 00011 22234666677788899999864 33333333333321 123677999999976665543
Q ss_pred CCceEecc
Q 040890 210 NDLMFTLI 217 (221)
Q Consensus 210 ~~~v~~l~ 217 (221)
++++.|.
T Consensus 172 -d~v~~l~ 178 (182)
T cd03215 172 -DRILVMY 178 (182)
T ss_pred -CEEEEec
Confidence 3555553
No 125
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00028 Score=61.42 Aligned_cols=47 Identities=15% Similarity=0.037 Sum_probs=37.8
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|-+...+.|.+.+..+. -...+.++|+.|+||+|||..+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999888754 234577999999999999976544
No 126
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.95 E-value=0.00019 Score=59.30 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|-.++-+|+||+-- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~---d~i~~l 202 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA---TELVLL 202 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 34556666778899999865 23333333333322 123677999999988776664 345554
No 127
>PHA00729 NTP-binding motif containing protein
Probab=97.94 E-value=9.2e-05 Score=59.89 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+++.+... +..-|.|+|.+|+||||||..+.+
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 33444443 345688999999999999999877
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=97.94 E-value=1.2e-05 Score=62.33 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCC-CCCCeEEEE
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVK-SYFHCHAWV 117 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv 117 (221)
-|.|+|++|+||||||+.+++..... -+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 47899999999999999999865444 457777754
No 129
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.94 E-value=7.2e-05 Score=60.58 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=29.9
Q ss_pred Ccee-eehhhH-HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCV-MLLEDL-KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~v-G~~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
++|+ |.++.. ..+.++.. .......+.++|..|+|||+||+.+++.
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444 443333 33334333 2233567889999999999999999874
No 130
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=0.0002 Score=57.52 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=68.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCC---CC-----------eEEEEeCc------CChHH--------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---FH-----------CHAWVSAN------LDPYV-------------- 125 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~-----------~~~wvs~~------~~~~~-------------- 125 (221)
.-.+++|+|..|+|||||++.+......... |+ ...++.+. .+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~ 115 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAK 115 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHH
Confidence 3578999999999999999999864221100 10 12344111 11111
Q ss_pred -HHHHHHHHhccCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcC
Q 040890 126 -ILDNILKIMMPQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 126 -~~~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR 198 (221)
...+++..++.......... +.-+...-.+...+-.+.-+++||+-- +......+...+.. ...|..||++|+
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (214)
T PRK13543 116 QMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195 (214)
T ss_pred HHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 11223333322110000011 122233344555566677799999764 33333333322221 123567999999
Q ss_pred ChHHHhhccCCCCceEec
Q 040890 199 SNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 199 ~~~va~~~~~~~~~v~~l 216 (221)
+.+.+..++ ++++.+
T Consensus 196 ~~~~~~~~~---~~i~~l 210 (214)
T PRK13543 196 GAYAAPPVR---TRMLTL 210 (214)
T ss_pred Chhhhhhhc---ceEEEE
Confidence 998887775 355554
No 131
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.93 E-value=0.00016 Score=57.74 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=36.4
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+...+..++-+++||+-- +......+...+.. ...|..||++|++...+..++ ++++.|
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~---d~v~~l 199 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA---DRIGII 199 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc---CEEEEE
Confidence 4556666677899999865 23333333333321 124677999999988776654 345544
No 132
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.93 E-value=0.00015 Score=58.10 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 133
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.93 E-value=3.8e-05 Score=66.48 Aligned_cols=101 Identities=8% Similarity=-0.006 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC-Ce-EEEE---eCcCChHHHHHHHHHHhccCCcchhc
Q 040890 69 ELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF-HC-HAWV---SANLDPYVILDNILKIMMPQSALREI 143 (221)
Q Consensus 69 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~-~~wv---s~~~~~~~~~~~il~~l~~~~~~~~~ 143 (221)
.+++.+.--..+ .-+.|+|..|+|||||++.+.+. +.... +. .+|+ .+...+.++++.++..+..+......
T Consensus 122 RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 467766543333 34589999999999999998773 22211 23 2444 77778889999998876653211000
Q ss_pred ccC-CHHHHHHHHHHHh--CCceEEEEEeCCC
Q 040890 144 MGK-GFRQRKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 144 ~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
... ..........+++ .++..+||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 010 1121222333333 6899999999984
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00012 Score=65.18 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=54.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCC-CC-eEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSY-FH-CHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
..-+.|+|..|+|||+|++.+.+. +... .. ..+|+ +..+++.++...+... .... +.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi----~~~~f~~~~~~~~~~~---------~~~~----f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYI----TSEKFLNDLVDSMKEG---------KLNE----FREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEE----EHHHHHHHHHHHHhcc---------cHHH----HHHH
Confidence 445889999999999999999984 3222 22 34455 2345556665555321 2222 2233
Q ss_pred hCCceEEEEEeCCCCh---H----HHHHHhhhcCCCCCCeEEEEEcC
Q 040890 159 LKNKRYLIVLEDVLTN---E----VRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 159 L~~kr~LlVlDdv~~~---~----~~~~l~~~l~~~~~gs~IivTTR 198 (221)
+..+.-+|++||+... . .+-.+...+. ..|..||+||.
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd 235 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSD 235 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECC
Confidence 3334568999999732 1 2222222232 23456888874
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=97.92 E-value=8e-05 Score=60.83 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+.|+|..|+|||.|++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~ 67 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL 67 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999876
No 136
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.92 E-value=0.00016 Score=57.38 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=67.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---------------CC-CeEEEEeC------cCChHHH-----------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---------------YF-HCHAWVSA------NLDPYVI----------- 126 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------~F-~~~~wvs~------~~~~~~~----------- 126 (221)
.-.+++|+|+.|+|||||++.+........ .+ ....|+.+ ..++.+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~ 105 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGA 105 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcch
Confidence 357899999999999999999876421100 01 12233311 1122211
Q ss_pred --HHHHHHHhccCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcC
Q 040890 127 --LDNILKIMMPQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 127 --~~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR 198 (221)
..++++.+........... +.-+...-.+...+..++-+++||+.- +...-+.+...+.. ...|..||++|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 185 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185 (200)
T ss_pred HHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 1223332222110000011 122333345666666778899999865 33333333333322 124677999999
Q ss_pred ChHHHhhcc
Q 040890 199 SNEIFRFCR 207 (221)
Q Consensus 199 ~~~va~~~~ 207 (221)
+......|.
T Consensus 186 ~~~~~~~~d 194 (200)
T PRK13540 186 QDLPLNKAD 194 (200)
T ss_pred Cchhccccc
Confidence 988887764
No 137
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.91 E-value=0.00019 Score=57.73 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.+...|-.++-+++||+-- +......+...+.. ...|..||++|++.+.+..++
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 199 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIA 199 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhc
Confidence 4555566677899999864 33333333333321 124678999999988766654
No 138
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=0.00018 Score=58.53 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=36.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..+.-+|+||+.- |...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~---d~v~~l 210 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIA---DRIAVL 210 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhc---CEEEEE
Confidence 34666666778899999865 22333333333321 113667999999988766554 344444
No 139
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.91 E-value=0.00031 Score=56.84 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.++-++++|+-- |......+...+.. ...|..||++|++.+.+..++
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~ 180 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATC 180 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 335666777788899999864 23333333333321 124677999999888665554
No 140
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.91 E-value=0.00019 Score=57.24 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|-...-+++||+-- +......+...+.. ...|..||++|++......|. ++++.+
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~---~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK---VRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC---ceEEec
Confidence 334566666788899999865 33333333333321 123567999999888887764 356554
No 141
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.90 E-value=0.00019 Score=57.61 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...+..+.-+++||+.- +......+...+.. ...|..||++|++.+....++ ++++.|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~---d~v~~l~ 203 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA---SQIAVVS 203 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc---CeEEEEE
Confidence 34555566677899999865 33333333333322 123677999999888765543 3555553
No 142
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.90 E-value=0.00018 Score=57.78 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CC-CCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RH-NGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~-~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|...+-+++||+-- +...-..+...+.. .. .|..||++|++.+.+. ++ ++++.|.
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~---d~v~~l~ 214 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YA---DRIIELR 214 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hh---cEEEEee
Confidence 34566667788899999764 23333333333322 12 3677999999988776 33 4666654
No 143
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.90 E-value=0.00018 Score=58.66 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=36.2
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC--CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR--HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+...|..++-+++||+.- |....+.+...+..- ..|..||++|++.+.+..| ++++.|
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~----d~i~~l 205 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD----DRLVVL 205 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC----CEEEEE
Confidence 4666666788899999865 333333343333321 2366799999988877643 345554
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=0.00031 Score=59.11 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-+.++|++|+||||+|+.+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999999976654
No 145
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=0.00022 Score=57.20 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|...+-+++||+-- +...-..+...+.. ...|..||++|++.+....++ ++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l 205 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLA---DRIVVM 205 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhc---CEEEEE
Confidence 344666667788899999864 23333333332221 122667999999888766554 345544
No 146
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.89 E-value=0.00019 Score=58.27 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999763
No 147
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.89 E-value=0.00029 Score=57.52 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=35.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...+-.++-+|+||+.- +......+...+..-..+..||++|++.+.+..++ ++++.|
T Consensus 151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~---d~i~~l 215 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA---DKVTVL 215 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEE
Confidence 344666666777899999875 22222233222221112457999999888776654 345444
No 148
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.89 E-value=0.00018 Score=58.75 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..++-+++||+.- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 162 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~---d~i~~l 227 (236)
T cd03267 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA---RRVLVI 227 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 34666666778899999875 33333333333321 123667999999998776654 355554
No 149
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.89 E-value=5.9e-05 Score=72.43 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=37.4
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-+.++||+.++..+++.|.... ..-+.++|++|+|||+||+.+..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997754 23345899999999999998877
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.89 E-value=4.9e-05 Score=72.76 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=37.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++||+++++.+++.|..... .-+.++|++|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999987542 3345899999999999988876
No 151
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.88 E-value=0.00017 Score=62.18 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
..-.+...|....-+|++|..- |...-..+...+.. ...|..||++|++.+++..++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~ 208 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3445677777888999999865 22222222222221 123678999999999987765
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=97.88 E-value=4.8e-05 Score=63.14 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+.|+|++|+|||+||..+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35577999999999999999865
No 153
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.88 E-value=0.00021 Score=57.28 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..+.-+++||.-- |...-..+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~---d~i~~l~ 211 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVA---HRVIILD 211 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CEEEEec
Confidence 345566666778899999764 22222233222221 123667899998887776654 4566553
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=0.00021 Score=58.49 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+++||+.- +......+...+.. ...|..||++|++.+.+..++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~ 199 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIG 199 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhC
Confidence 34566666778899999865 33333333333332 123667999999888766554
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00037 Score=62.90 Aligned_cols=46 Identities=11% Similarity=-0.081 Sum_probs=37.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997754 234567899999999999998765
No 156
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00026 Score=65.63 Aligned_cols=46 Identities=15% Similarity=-0.032 Sum_probs=37.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+...+.|.+++..+. -...+.++|+.|+||||+|+.+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999987753 245577899999999999987655
No 157
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.88 E-value=0.00021 Score=59.14 Aligned_cols=127 Identities=15% Similarity=0.075 Sum_probs=66.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC-C--CC---------CeEEEEeCc------CChHH------------HHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK-S--YF---------HCHAWVSAN------LDPYV------------ILDN 129 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F---------~~~~wvs~~------~~~~~------------~~~~ 129 (221)
.-.+++|+|+.|+|||||++.+....... . .| ....|+.+. .++.+ -..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 116 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ 116 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHH
Confidence 35789999999999999999998642211 0 01 113344221 11111 1223
Q ss_pred HHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChH
Q 040890 130 ILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNE 201 (221)
Q Consensus 130 il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~ 201 (221)
+++.++.... .+...+....+.+ .+...|-...-+++||.-- +......+...+.. ...|..||++|++.+
T Consensus 117 ~l~~~gl~~~~~~~~~~LSgGqkqrl-~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 117 ALAAVGLADRANEWPAALSGGQKQRV-ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHcCChhHhcCChhhCCHHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3333333211 1111111333333 4555566677889999765 23333333333321 123667999999988
Q ss_pred HHhhcc
Q 040890 202 IFRFCR 207 (221)
Q Consensus 202 va~~~~ 207 (221)
.+..++
T Consensus 196 ~~~~~~ 201 (257)
T PRK11247 196 EAVAMA 201 (257)
T ss_pred HHHHhC
Confidence 765554
No 158
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00017 Score=66.46 Aligned_cols=141 Identities=10% Similarity=-0.017 Sum_probs=72.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+...-..... ...++.-...+.|......
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-----~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-----GEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-----CCCCcccHHHHHHhcCCCC
Confidence 4568898888888888887643 245677899999999999998876321110000 0011111111111111000
Q ss_pred CCcchh---cccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC-hHHH
Q 040890 137 QSALRE---IMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS-NEIF 203 (221)
Q Consensus 137 ~~~~~~---~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~-~~va 203 (221)
..-... .... +...+.+.+... ..+++-++|+|++. +...++.|...+........+|++|.+ ..+.
T Consensus 89 Dv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 89 DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred ceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 000000 0000 122222222211 24566799999986 456778887777544445556665544 4444
No 159
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=9.7e-05 Score=66.03 Aligned_cols=102 Identities=9% Similarity=0.052 Sum_probs=55.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLK 160 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 160 (221)
..-+.|+|..|+|||+|++.+.+.......-...+++ +..+++..+...+.... ...+.+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----~~~~f~~~~~~~l~~~~-----------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM----SGDEFARKAVDILQKTH-----------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE----EHHHHHHHHHHHHHHhh-----------hHHHHHHHHhc
Confidence 4568899999999999999998732111111223344 33556666666554210 11233333333
Q ss_pred CceEEEEEeCCCCh---HHH-HHHhhhcCC-CCCCeEEEEEcC
Q 040890 161 NKRYLIVLEDVLTN---EVR-KYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 161 ~kr~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR 198 (221)
..-+||+||+... ..+ +.|...+.. ...|..||+|+.
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3448899999631 222 333222221 133456888865
No 160
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=0.00019 Score=62.02 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..++-+|+||.-- |......+...+.. ...|..||++|++.+.+..++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~ 208 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 334666666788899999864 33333333333322 123677999999988877654
No 161
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.87 E-value=7.6e-05 Score=63.99 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-+.++|..|+|||+||.++.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 66889999999999999999884
No 162
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=0.00023 Score=58.25 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 163
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.87 E-value=0.00018 Score=58.85 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998763
No 164
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.86 E-value=0.00036 Score=55.49 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 040890 83 VVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~ 102 (221)
+++|+|+.|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999876
No 165
>PRK10908 cell division protein FtsE; Provisional
Probab=97.86 E-value=0.00023 Score=57.36 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|-.++-+++||+-- +...-+.+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~ 211 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS---YRMLTLS 211 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEE
Confidence 34556666677899999764 22222233222221 123667999999988777664 4555553
No 166
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.86 E-value=0.0002 Score=57.37 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|-.++-+++||+-- +......+...+.. ...|..||++|++...+..++ ++++.|.
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~---d~i~~l~ 210 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTR---HRVIALE 210 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 34556666677899999865 23333333332221 123667999999888776653 4566553
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0004 Score=62.12 Aligned_cols=46 Identities=13% Similarity=-0.107 Sum_probs=37.7
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 5678999999999999887643 235577899999999999988765
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=9.4e-05 Score=66.14 Aligned_cols=73 Identities=7% Similarity=0.122 Sum_probs=43.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCC--CeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF--HCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHD 157 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 157 (221)
...-+.|+|+.|+|||+|++.+.+. ....+ ...+++ +..++...+...+... ....+ .+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi----~~~~~~~~~~~~~~~~---------~~~~~----~~ 207 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYV----TSEKFTNDFVNALRNN---------TMEEF----KE 207 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEE----EHHHHHHHHHHHHHcC---------cHHHH----HH
Confidence 3456889999999999999999884 33322 233455 2233444444444211 22222 33
Q ss_pred HhCCceEEEEEeCCC
Q 040890 158 YLKNKRYLIVLEDVL 172 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~ 172 (221)
.++ +.-+|+|||+.
T Consensus 208 ~~~-~~dlLiiDDi~ 221 (450)
T PRK00149 208 KYR-SVDVLLIDDIQ 221 (450)
T ss_pred HHh-cCCEEEEehhh
Confidence 333 34489999996
No 169
>PRK06526 transposase; Provisional
Probab=97.85 E-value=2.3e-05 Score=64.77 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-+.++|++|+|||+||..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999988763
No 170
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.85 E-value=0.00021 Score=58.30 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-C-CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-R-HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~-~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..+.-+++||..- +....+.+...+.. . ..|..||++|++...+..++ ++++.|
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~---d~i~~l 204 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVA---DRIVVM 204 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc---CEEEEE
Confidence 34555566677899999875 33444444444432 1 22677999999988766654 345444
No 171
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.85 E-value=0.00031 Score=57.10 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|-.++-+|+||+-- +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~---d~i~~l 216 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA---DRVTVL 216 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 34566666778899999865 23323333222221 114667999999888877654 345444
No 172
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.85 E-value=0.00023 Score=62.64 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=35.3
Q ss_pred ceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 59 RCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
++.|.+..+++|.+.+.. +-...+-+.++|++|+|||+||+.+.+.
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 467888888888776532 1123566889999999999999999983
No 173
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.84 E-value=2.6e-05 Score=62.80 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=62.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh-
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL- 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L- 159 (221)
.+++.|+|+.|.|||||.+.+...... .+-.+.+|. .... ...+.++...+........... ....-...+...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a-~~~~-~~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~l~ 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA-DSAT-IGLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKALR 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc-CCcE-EeeeeeeeeeeCCccChhhccc-hHHHHHHHHHHHHH
Confidence 488899999999999999887631111 011111111 1110 0122222233332222111111 2222223333332
Q ss_pred -CCceEEEEEeCCCCh---HHH----HHHhhhcCCC-CCCeEEEEEcCChHHHhhcc
Q 040890 160 -KNKRYLIVLEDVLTN---EVR----KYLGEALPDR-HNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 160 -~~kr~LlVlDdv~~~---~~~----~~l~~~l~~~-~~gs~IivTTR~~~va~~~~ 207 (221)
..++-|++||..-.. .+. ..+...+... ..+..+|++|++.+++....
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 467899999998632 111 2233333322 23457999999999988764
No 174
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=0.00025 Score=57.64 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..++-+++||+.- +......+...+.. ...|..||++|++......++
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~ 198 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMS 198 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 344566666778899999875 33333444333322 122677889988887655543
No 175
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=0.00024 Score=57.69 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=36.7
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...+..++-+++||+-- +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l 203 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIA---PRSLVV 203 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEE
Confidence 34555566677889999864 33333333333322 123667999999998776654 345444
No 176
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.84 E-value=2.7e-05 Score=62.28 Aligned_cols=120 Identities=9% Similarity=0.082 Sum_probs=61.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccC---CHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGK---GFRQRKTALH 156 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~---~~~~l~~~l~ 156 (221)
..++.|.|+.|.||||+.+.+....-. ..+.+++ ..... -.+...|...+....+....... +..++. .+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l---a~~G~~vpa~~~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM---AQIGCFVPAEYAT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA-YIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---HHcCCCcchhhcC-ccChhheeEecCCccccchhhhHHHHHHHHHH-HHH
Confidence 478999999999999999887532100 0111222 11111 12222333333222111111111 222222 222
Q ss_pred HHhCCceEEEEEeCCCC---hHH----HHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 157 DYLKNKRYLIVLEDVLT---NEV----RKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
. +..++-|+++|.... ..+ ...+...+. ..|+.+|++|.+.+++..+..
T Consensus 104 ~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 D-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 2 245678999999742 222 122333343 237889999999999988764
No 177
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.84 E-value=4.1e-05 Score=57.12 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 178
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.83 E-value=0.00035 Score=56.20 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|..++-+++||+.. +....+.+...+.....+..||++|++......| ++++.|.
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----d~i~~l~ 211 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS----DRILVLD 211 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC----CEEEEEE
Confidence 34556666777899999875 3333333333333222346688888888776654 4555553
No 179
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=0.00023 Score=59.46 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...|..++-+|+||+.. +......+...+.. ...|..||++|++.+.+..++
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~ 205 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA 205 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 33445667777888999999875 33333333333321 123677999999988776554
No 180
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00036 Score=64.28 Aligned_cols=46 Identities=13% Similarity=-0.036 Sum_probs=37.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+.-.+.|.+.+..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999987753 235567899999999999988766
No 181
>PRK04296 thymidine kinase; Provisional
Probab=97.83 E-value=5.5e-05 Score=59.81 Aligned_cols=112 Identities=8% Similarity=-0.037 Sum_probs=61.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHhC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDYLK 160 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~ 160 (221)
.++.|+|+.|+||||+|..+... ...+-...+.+...++.......++.+++..... ... ...++...+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~---~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREA---IPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEeccccccccCCcEecCCCCcccc---eEeCChHHHHHHHHh-hC
Confidence 46788999999999999776652 2222222233322222222233445555432110 011 34455555555 33
Q ss_pred CceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 161 NKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 161 ~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
++.-+||+|.+.- .++..++...+. ..|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 4455999999863 343444444432 45788999999833
No 182
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.83 E-value=0.00025 Score=57.64 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 183
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.83 E-value=0.00027 Score=55.94 Aligned_cols=120 Identities=8% Similarity=0.052 Sum_probs=62.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-----------------eCcCC---hHHHHHHHHHHhccCCc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-----------------SANLD---PYVILDNILKIMMPQSA 139 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-----------------s~~~~---~~~~~~~il~~l~~~~~ 139 (221)
.-.+++|.|+.|+|||||.+.+..-.- .......+++ ++.+. ...+...+.......
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-- 110 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-- 110 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--
Confidence 357899999999999999999987320 0112222222 21111 112222221100000
Q ss_pred chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChH-HHhhc
Q 040890 140 LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNE-IFRFC 206 (221)
Q Consensus 140 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~-va~~~ 206 (221)
..+....+ .-.+...|..++-+++||+.- +......+...+.. ...|..||++|++.. .+..+
T Consensus 111 ---~LS~G~~q-rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 178 (194)
T cd03213 111 ---GLSGGERK-RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFEL 178 (194)
T ss_pred ---cCCHHHHH-HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHh
Confidence 01112222 334666666777899999875 33333444333322 123777999998874 44444
No 184
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.83 E-value=0.00037 Score=55.41 Aligned_cols=133 Identities=13% Similarity=0.055 Sum_probs=67.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---------------CCC-eEEEEeCc------CChH------------H
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---------------YFH-CHAWVSAN------LDPY------------V 125 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------~F~-~~~wvs~~------~~~~------------~ 125 (221)
.-.+++|+|..|+|||||.+.+........ .+. ...++++. .++. +
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 104 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDE 104 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHH
Confidence 357899999999999999999876321100 011 12233111 1111 1
Q ss_pred HHHHHHHHhccCCcc---hhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcC
Q 040890 126 ILDNILKIMMPQSAL---REIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 126 ~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR 198 (221)
-..++++.++..... +...+....+ .-.+...|..+.-+++||+.- +......+...+.. ...|..||++|+
T Consensus 105 ~~~~~l~~~~l~~~~~~~~~~LS~G~~q-rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH 183 (201)
T cd03231 105 QVEEALARVGLNGFEDRPVAQLSAGQQR-RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183 (201)
T ss_pred HHHHHHHHcCChhhhcCchhhCCHHHHH-HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 123333333322110 1111112333 334566666677799999864 33333444333321 223667888888
Q ss_pred ChHHHhhccCCCCceEec
Q 040890 199 SNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 199 ~~~va~~~~~~~~~v~~l 216 (221)
+..-...++ ++++.+
T Consensus 184 ~~~~~~~~~---~~~~~~ 198 (201)
T cd03231 184 QDLGLSEAG---ARELDL 198 (201)
T ss_pred Cchhhhhcc---ceeEec
Confidence 765554454 356655
No 185
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.82 E-value=0.00023 Score=58.89 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998864
No 186
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.82 E-value=0.00036 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998863
No 187
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.81 E-value=0.00024 Score=61.92 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-+|+||+--+ ...-..+...+.. ...|..||++|++.+-+..++ ++++.|
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~---d~i~vl 207 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA---DKIVVL 207 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 3456677777888999998652 2222222222221 123667999999988776654 345544
No 188
>PRK06921 hypothetical protein; Provisional
Probab=97.81 E-value=8.4e-05 Score=61.90 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-+.++|..|+|||+||.++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 466889999999999999999884
No 189
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.00012 Score=64.55 Aligned_cols=72 Identities=10% Similarity=0.166 Sum_probs=42.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCC--CeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF--HCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
...+.|+|+.|+|||+|++.+++. +.... ...+++ +..++...+...+... ....+. +.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi----~~~~~~~~~~~~~~~~---------~~~~~~----~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYV----SSEKFTNDFVNALRNN---------KMEEFK----EK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEE----EHHHHHHHHHHHHHcC---------CHHHHH----HH
Confidence 456889999999999999999884 32221 233455 2334444555444321 222222 22
Q ss_pred hCCceEEEEEeCCC
Q 040890 159 LKNKRYLIVLEDVL 172 (221)
Q Consensus 159 L~~kr~LlVlDdv~ 172 (221)
+++ .-+|+|||+.
T Consensus 197 ~~~-~dlLiiDDi~ 209 (405)
T TIGR00362 197 YRS-VDLLLIDDIQ 209 (405)
T ss_pred HHh-CCEEEEehhh
Confidence 322 3489999996
No 190
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.81 E-value=0.00034 Score=55.91 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=38.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecccC
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLILF 219 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~~~ 219 (221)
-.+...|..+.-|++||+-- +......+...+.. ...|..||++|++.+.... ++++++..|
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-----~~~~~~~~~ 201 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-----ARELDLGPF 201 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----CcEEeecCc
Confidence 34566666778899999764 33333334333331 1246779999998776654 456777654
No 191
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00039 Score=57.92 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+|+||.-- |...-..+...+.. ...|..||++|++.+.+..++
T Consensus 169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~ 228 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLG 228 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 34666667788899999865 23333333333221 123677999999887665543
No 192
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.81 E-value=0.00039 Score=59.98 Aligned_cols=53 Identities=21% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h----HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N----EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~----~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..++-+|+||.--+ . ..|+.|. .+. ..|..||+||++.+-+..++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~-~l~--~~g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR-SLL--ARGKTILLTTHFMEEAERLC 239 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH-HHH--hCCCEEEEECCCHHHHHHhC
Confidence 3456666778889999997652 2 2333333 332 24778999999988877665
No 193
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00029 Score=56.30 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|-..+-+++||+-- |....+.+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l 202 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA---QRVVFL 202 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhh---CEEEEE
Confidence 34555556677899999865 33444444443332 123677999999888776654 355554
No 194
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00038 Score=56.85 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+..-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999763
No 195
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00029 Score=57.43 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|...+-+++||.-. +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~---d~v~~l 218 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYA---DRIVGL 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 34566666777899999865 23333333333322 123667999999988877654 345444
No 196
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=0.00035 Score=57.12 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+++||..- +......+...+.. ...|..||++|++......++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~ 208 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 34556666677899999875 33444444333332 123667899999888776543
No 197
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.81 E-value=0.00039 Score=58.97 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 154 ALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.+...|-.++-+|+||.--+ .. .|+.|. .+. ..|..||++|++.+.+..++
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~-~~~--~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLR-SLL--ARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHH--hCCCEEEEECCCHHHHHHhC
Confidence 46666777888999997642 22 223332 232 24677999999988776654
No 198
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00016 Score=55.18 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=70.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
-.+++|+|..|+|||||++.+... . ......+++ ....... ........+.-..+ ....+.+.+ .+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~-~~~~~~~~i~~~~q----lS~G~~~r~-~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL-PLEELRRRIGYVPQ----LSGGQRQRV-ALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC-CHHHHHhceEEEee----CCHHHHHHH-HHHHHH
Confidence 478999999999999999999873 2 234556666 2221100 00111111111000 111333333 456666
Q ss_pred CCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 160 KNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 160 ~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
....-+++||+.- +......+...+.. ...+..+|++|.+.+.+..++ ++++.+.
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~---d~i~~l~ 154 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAA---DRVIVLK 154 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 6678899999875 33333333333321 122567999999988888764 4566554
No 199
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=0.00028 Score=55.72 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=64.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcC---CCC-----------CCC-eEEEEeCcC---ChHHHHHHHHHHhccCCcchh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDY---VKS-----------YFH-CHAWVSANL---DPYVILDNILKIMMPQSALRE 142 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-----------~F~-~~~wvs~~~---~~~~~~~~il~~l~~~~~~~~ 142 (221)
-.+++|+|..|+|||||++.+..... ... .+. ...|+.+.+ ....+...+.-.....
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----- 107 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----- 107 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh-----
Confidence 57899999999999999999986311 111 011 122332221 1112222222110000
Q ss_pred cccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChH-HHhhccCCCCceEecc
Q 040890 143 IMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNE-IFRFCRLDNDLMFTLI 217 (221)
Q Consensus 143 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~-va~~~~~~~~~v~~l~ 217 (221)
..+..+.+. -.+...|..+.-++++|+-- +......+...+.. ...|..||++|++.+ .+..++ ++++.|.
T Consensus 108 ~LSgGe~qr-v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~---d~i~~l~ 183 (192)
T cd03232 108 GLSVEQRKR-LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF---DRLLLLK 183 (192)
T ss_pred cCCHHHhHH-HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC---CEEEEEc
Confidence 011133333 34555666677889999764 33333333222221 123677899998876 333333 4566554
No 200
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=6.9e-05 Score=68.73 Aligned_cols=97 Identities=6% Similarity=0.085 Sum_probs=53.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCC--CeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF--HCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
...+.|+|..|+|||.|++.+.+. ....+ -..+++ +..+++.++...+... ... .+.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yi----taeef~~el~~al~~~---------~~~----~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYV----SSEEFTNEFINSIRDG---------KGD----SFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEe----eHHHHHHHHHHHHHhc---------cHH----HHHHH
Confidence 345899999999999999999984 32211 123444 3344455554443211 111 22233
Q ss_pred hCCceEEEEEeCCCC---hHHH----HHHhhhcCCCCCCeEEEEEcCC
Q 040890 159 LKNKRYLIVLEDVLT---NEVR----KYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 159 L~~kr~LlVlDdv~~---~~~~----~~l~~~l~~~~~gs~IivTTR~ 199 (221)
++. -=+|+|||+.. ...| -.+...+. ..|..|||||..
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~ 419 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDR 419 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCC
Confidence 322 35899999972 2222 22333333 235568888864
No 201
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.80 E-value=0.0002 Score=64.73 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=37.1
Q ss_pred CCceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.++.|.+..+++|.+.+... -...+-+.++|++|+|||++|+.+++.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 356788999999988876421 123455789999999999999999984
No 202
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=0.0003 Score=58.89 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhh
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~ 205 (221)
..-.+...|..++-+|+||+.. +...-..+...+.. ...|..||++|++.+.+..
T Consensus 147 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~ 206 (279)
T PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL 206 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 3445677777888999999876 33333333333322 1237789999998877754
No 203
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.79 E-value=0.00043 Score=55.36 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|..++-+++||+-- +....+.+...+.. ...|..||++|++.+....++ ++++.|.
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~---d~i~~l~ 209 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA---DRVIFMD 209 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 34556666677899999865 33333333333321 123667889998887766554 4566654
No 204
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00049 Score=63.85 Aligned_cols=47 Identities=19% Similarity=-0.008 Sum_probs=38.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 4578999999999999888754 2345678999999999999988763
No 205
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00032 Score=56.57 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=40.8
Q ss_pred HHHHHHhCCceEEEEEeCCCChHHHHHH------hhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVLTNEVRKYL------GEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~~~~~~~~l------~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..+.+.+-=++=|.|||..++.-+.+.+ ...+. .+|+.+++.|+.+.++.... .+++|-|
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~--pD~vhvl 218 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIK--PDKVHVL 218 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcC--CCEEEEE
Confidence 3455555567789999988754333332 22333 44777999999999999998 5666655
No 206
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00021 Score=63.74 Aligned_cols=99 Identities=8% Similarity=0.137 Sum_probs=52.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLK 160 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 160 (221)
..-+.|+|+.|+|||+|++.+.+. +.......+++ +...+...+...+... . .+.++..++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi----~~~~f~~~~~~~l~~~---------~----~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYV----RSELFTEHLVSAIRSG---------E----MQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEe----eHHHHHHHHHHHHhcc---------h----HHHHHHHcc
Confidence 456789999999999999999884 22222233444 2234444444444210 1 122333333
Q ss_pred CceEEEEEeCCCCh----HHHHHHhhhcCC-CCCCeEEEEEcCC
Q 040890 161 NKRYLIVLEDVLTN----EVRKYLGEALPD-RHNGSRVLAMLTS 199 (221)
Q Consensus 161 ~kr~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~ 199 (221)
..-+|++||+... ...+.+...+.. ...|..||+||..
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 3458889998632 111222222210 1235568888754
No 207
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00042 Score=56.52 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=75.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcC------------CCCCCCeEEEEeCcCC------------------------h
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDY------------VKSYFHCHAWVSANLD------------------------P 123 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~~F~~~~wvs~~~~------------------------~ 123 (221)
.-..++|+|++|+|||||.+.+..-.+ +...-..+.++.|.+. .
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 357899999999999999999875211 1111122233311110 1
Q ss_pred HHHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC------h-HHHHHHhhhcCCCCCCeEE
Q 040890 124 YVILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT------N-EVRKYLGEALPDRHNGSRV 193 (221)
Q Consensus 124 ~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~------~-~~~~~l~~~l~~~~~gs~I 193 (221)
.+...+++...+... ..|...++.+.+.. .+.+.|..++-+|.+|.-.. . ...+.+...+. ..+..|
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV-aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~--~~~~Tv 184 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRV-AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE--ETRKTV 184 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHHH-HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH--hhCCEE
Confidence 234555555554422 22333333444444 56677778888888997542 1 22233333332 345778
Q ss_pred EEEcCChHHHhhccCCCCceEecc
Q 040890 194 LAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 194 ivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
+..|++-+=|-.++ ++||-|.
T Consensus 185 llVTHdi~EAv~Ls---dRivvl~ 205 (248)
T COG1116 185 LLVTHDVDEAVYLA---DRVVVLS 205 (248)
T ss_pred EEEeCCHHHHHhhh---CEEEEec
Confidence 88999888777774 5666654
No 208
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00062 Score=61.90 Aligned_cols=46 Identities=13% Similarity=-0.148 Sum_probs=37.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|-+...+.|...+..+. -..++.++|+.|+||||+|+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999887654 345667899999999999997765
No 209
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.78 E-value=0.00027 Score=56.14 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=63.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCC-------------C------Ce-EEEEeCcCCh--HHHHHHHHHHhccC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY-------------F------HC-HAWVSANLDP--YVILDNILKIMMPQ 137 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------F------~~-~~wvs~~~~~--~~~~~~il~~l~~~ 137 (221)
.-.+++|+|..|+|||||.+.+......... + .. ..++++.+.. .....+++....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~-- 102 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN-- 102 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc--
Confidence 3578999999999999999998874211100 0 01 1222222110 011112221110
Q ss_pred CcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhh
Q 040890 138 SALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 138 ~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~ 205 (221)
...+ .-+...-.+...|..++-+++||+.- +......+...+.. ...|..||++|++.+.+..
T Consensus 103 ----~~LS-~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 103 ----EGFS-GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ----ccCC-HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 0111 22233344666777788899999875 33333333333321 1236779999999888775
No 210
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.77 E-value=0.00055 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998763
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.77 E-value=9e-06 Score=63.68 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-+.++|..|+|||.||..+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH
Confidence 355889999999999999988763
No 212
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=0.00034 Score=58.66 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=38.1
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||+-. +......+...+.. ...|..||++|++.+....| ++++.|
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~----d~i~~l 216 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA----DQVLVL 216 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC----CEEEEE
Confidence 345666677788899999876 33444444443332 12367799999988877543 345544
No 213
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=0.00057 Score=57.74 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=68.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC---------------CC-CeEEEEeCc------CChHH-------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS---------------YF-HCHAWVSAN------LDPYV------------- 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------------~F-~~~~wvs~~------~~~~~------------- 125 (221)
-.+.++.|+.|+|||||.+.+..-.+-.. .+ ....++.+. .+..+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~ 110 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK 110 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh
Confidence 47899999999999999999987322100 00 122333111 12222
Q ss_pred -----HHHHHHHHhccCCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---h----HHHHHHhhhcCCCCCCe
Q 040890 126 -----ILDNILKIMMPQSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---N----EVRKYLGEALPDRHNGS 191 (221)
Q Consensus 126 -----~~~~il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~----~~~~~l~~~l~~~~~gs 191 (221)
....+++.++........... .-....-.+...|-+++-|++||.--+ . ..|+.|... .. ..|.
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l-~~-~g~~ 188 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL-AK-EGGV 188 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHH-Hh-CCCc
Confidence 333444444443211101111 122223346666778889999997642 2 334433333 21 1236
Q ss_pred EEEEEcCChHHHhhcc
Q 040890 192 RVLAMLTSNEIFRFCR 207 (221)
Q Consensus 192 ~IivTTR~~~va~~~~ 207 (221)
.||+||+..+-+..++
T Consensus 189 tvlissH~l~e~~~~~ 204 (293)
T COG1131 189 TILLSTHILEEAEELC 204 (293)
T ss_pred EEEEeCCcHHHHHHhC
Confidence 7999999998888875
No 214
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=0.00046 Score=56.81 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=34.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.++-+|+||+.- |...-..+...+.. ...|..||++|++.+.+..++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~ 221 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGIS 221 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhC
Confidence 345666677788999999875 22222233222221 122667999999988876654
No 215
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=0.00059 Score=62.26 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=34.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.+.-+|+||.-. |...-..+...+.. .|..||++|++.+.+..++
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhc
Confidence 344555666678899999875 23333344444432 3567999999988776654
No 216
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.76 E-value=0.00037 Score=56.43 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC--CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR--HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-+++||+-- +......+...+..- ..|..||++|++.+....| ++++.|
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~----d~i~~l 210 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHA----DKVITL 210 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhC----CEEEEE
Confidence 344666677788899999865 333444444433321 2367799999998887642 456665
No 217
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.75 E-value=0.00033 Score=57.19 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999864
No 218
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.75 E-value=0.00042 Score=60.27 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhh---hcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGE---ALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~---~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.|.+.|..+.-+|+||+-- |...-..+.. .+.....|..+|++|++.+-+..++ +++..|
T Consensus 145 RvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~---dri~vl 212 (362)
T TIGR03258 145 RIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA---DKAGIM 212 (362)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 345777778888999999764 2222233332 2222112677999999988777664 345444
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.75 E-value=0.00034 Score=67.31 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=37.1
Q ss_pred CCceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999998887531 12235788999999999999999886
No 220
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00041 Score=60.19 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.|.+.|..+.-+|+||.--+ ...-+.+...+.. ...|..+|++|++.+-+..++
T Consensus 140 ~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 140 RQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 334456777778889999998652 2222222222211 123678999999987666654
No 221
>PRK06620 hypothetical protein; Validated
Probab=97.74 E-value=0.00028 Score=56.85 Aligned_cols=23 Identities=9% Similarity=-0.089 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+.|+|++|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999988773
No 222
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00047 Score=57.39 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.|+.|+|||||.+.+..-
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999863
No 223
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00041 Score=60.06 Aligned_cols=47 Identities=21% Similarity=0.081 Sum_probs=39.0
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....++|-++..+.|...+.++. -...+.++|+.|+||||||..+.+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 45678999999999999987754 345678899999999999987765
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.74 E-value=0.00017 Score=57.55 Aligned_cols=91 Identities=9% Similarity=0.067 Sum_probs=51.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHh----ccCCcchhcccC-CHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIM----MPQSALREIMGK-GFRQRK 152 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l----~~~~~~~~~~~~-~~~~l~ 152 (221)
+.-+++.|+|++|+|||+|+.++... ....-...+|+ ...++...+.. +.... ...--.....+. +.....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEGLSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 55789999999999999999877652 22224567899 43355544433 33322 000000000011 223345
Q ss_pred HHHHHHhCC-ceEEEEEeCCC
Q 040890 153 TALHDYLKN-KRYLIVLEDVL 172 (221)
Q Consensus 153 ~~l~~~L~~-kr~LlVlDdv~ 172 (221)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 566665644 45699999874
No 225
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.73 E-value=0.0007 Score=55.52 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999875
No 226
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00059 Score=63.88 Aligned_cols=149 Identities=15% Similarity=0.062 Sum_probs=78.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCC---C-CeEEE---EeCcCChHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---F-HCHAW---VSANLDPYVILDN 129 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~w---vs~~~~~~~~~~~ 129 (221)
-.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+..--... + .|... ....++..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi----- 90 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII----- 90 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE-----
Confidence 4578999999999999997754 2455678999999999999888652110000 0 01000 00000000
Q ss_pred HHHHhccCCcchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEE-EEcCChHHHh
Q 040890 130 ILKIMMPQSALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVL-AMLTSNEIFR 204 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Ii-vTTR~~~va~ 204 (221)
.+.... .... +..++.+.+... ..+++-++|+|++. +...++.|...+-.....+.+| +||....+..
T Consensus 91 ---eidaas----n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 91 ---EMDAAS----NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred ---EEeccc----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000000 0000 233333333322 13566689999986 5567888877776544455544 4555555443
Q ss_pred hccCCCCceEecccC
Q 040890 205 FCRLDNDLMFTLILF 219 (221)
Q Consensus 205 ~~~~~~~~v~~l~~~ 219 (221)
...+ -..++++.++
T Consensus 164 TI~S-Rcq~ieF~~L 177 (725)
T PRK07133 164 TILS-RVQRFNFRRI 177 (725)
T ss_pred HHHh-hceeEEccCC
Confidence 3221 2235555443
No 227
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00054 Score=62.90 Aligned_cols=46 Identities=20% Similarity=-0.005 Sum_probs=38.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+.+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999999999999998754 245566899999999999988755
No 228
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.73 E-value=0.00057 Score=61.89 Aligned_cols=124 Identities=9% Similarity=0.070 Sum_probs=64.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-------------eCcCChHHH------------------HHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-------------SANLDPYVI------------------LDN 129 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------------s~~~~~~~~------------------~~~ 129 (221)
-.+++|+|+.|+|||||++.+...... ....+++ ....++.+. ...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 578999999999999999999874221 1222222 111121111 112
Q ss_pred HHHHhccCCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHH
Q 040890 130 ILKIMMPQSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIF 203 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va 203 (221)
+++.++........... .-+...-.+...|...+-+|+||.-- |......+...+.. ...|..||++|++.+.+
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i 206 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 23322221110011111 12222334666666778899999865 23322333222221 13467799999998777
Q ss_pred hhcc
Q 040890 204 RFCR 207 (221)
Q Consensus 204 ~~~~ 207 (221)
..++
T Consensus 207 ~~l~ 210 (549)
T PRK13545 207 KSFC 210 (549)
T ss_pred HHhC
Confidence 6654
No 229
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00077 Score=55.33 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+++||+.- +...-..+...+..-..|..||++|++.+.+..++ ++++.|
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~---d~i~~l 218 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARIS---DYVAFL 218 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEE
Confidence 334555666778899999864 23333333333222122567999999888776543 345544
No 230
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.72 E-value=0.00045 Score=60.34 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.|.+.|..+.-+++||+-- |...-..+...+.. ...|..+|++|.+..-+..++ ++++.|
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~la---Dri~vl 218 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMS---DRIVVM 218 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 344666676777899999865 22333333333321 123677899999888777664 445444
No 231
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00043 Score=57.81 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-..+-+++||+.. +......+...+.. ...|..||++|.+.+.+..++
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~ 204 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA 204 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 344566666788899999875 33333333333321 123667888888887766543
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.72 E-value=0.00046 Score=57.03 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=38.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+++||+.- +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~---d~i~~l 225 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---HRLLVM 225 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc---CEEEEE
Confidence 344666667788999999875 23333333333221 123677999999998887654 345444
No 233
>PRK13695 putative NTPase; Provisional
Probab=97.72 E-value=4.8e-05 Score=59.10 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=23.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV 117 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 117 (221)
-++|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 3789999999999999998774221 234444455
No 234
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00047 Score=59.76 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=68.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC--------------------CC-CeEEEEeCc------CChH---------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS--------------------YF-HCHAWVSAN------LDPY--------- 124 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F-~~~~wvs~~------~~~~--------- 124 (221)
-.+++|+|+.|+|||||++.+........ .. ....++.+. .++.
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 103 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK 103 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh
Confidence 46899999999999999999986321100 00 112233221 1211
Q ss_pred ---HHHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEE
Q 040890 125 ---VILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRV 193 (221)
Q Consensus 125 ---~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~I 193 (221)
+-..++++.++.... .+...+....+ .-.+...|..+.-+|+||+-- |...-..+...+.. ...|..|
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q-RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 104 SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQ-RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhHHHHHHHHHHcCCchhhhCCcccCCHHHHH-HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 112334444433211 11111113333 345666677778899999764 22222223222221 1236679
Q ss_pred EEEcCChHHHhhccCCCCceEec
Q 040890 194 LAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 194 ivTTR~~~va~~~~~~~~~v~~l 216 (221)
|++|++.+.+..++ ++++.|
T Consensus 183 i~vTHd~~~~~~~~---d~i~~l 202 (352)
T PRK11144 183 LYVSHSLDEILRLA---DRVVVL 202 (352)
T ss_pred EEEecCHHHHHHhC---CEEEEE
Confidence 99999988776654 344444
No 235
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.0006 Score=56.81 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..++-+|+||+.- |......+...+.. ...|..||++|++.+.+..++
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 203 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS 203 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 35666677788899999865 23332333332221 123667999999988776554
No 236
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.71 E-value=0.00018 Score=69.05 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCceeeehhhHHHHHHHHhc-------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIE-------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.+..++.+.+.+.. ......++.++|+.|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998843 123345788999999999999987765
No 237
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.71 E-value=0.00051 Score=56.50 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999863
No 238
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.71 E-value=0.00035 Score=63.56 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-+...-.|.+.|-.+.=+|+||.--+ .+...-|...|. .-+| .+||+|++......+++ +|+++.
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V~t---~I~~ld 224 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNVAT---HILELD 224 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHHhh---heEEec
Confidence 445556678888888999999996543 233333444444 2335 69999999999999874 444443
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00024 Score=57.47 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=51.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHH----hccCCcchhcccC-CHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKI----MMPQSALREIMGK-GFRQRK 152 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~----l~~~~~~~~~~~~-~~~~l~ 152 (221)
+.-.++.|+|.+|+|||+||.++... ....-..++|+ ...++...+ .++... +..........+. +..+++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTEGLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECCCCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 55789999999999999999887653 21223567888 434544433 333332 1000000000011 223344
Q ss_pred HHHHHHhCCceEEEEEeCCC
Q 040890 153 TALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~ 172 (221)
+.+...++.+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 55555555677799999974
No 240
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.0005 Score=59.56 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.|.+.|..+.-+++||.-- +......+...+.. ...|..+|++|++.+-+..++ +++.-|
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~la---D~i~vm 210 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS---DTVIVM 210 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEE
Confidence 345677777788899999764 33333333333321 233677999999998887764 344444
No 241
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.71 E-value=8.5e-05 Score=61.84 Aligned_cols=90 Identities=9% Similarity=0.100 Sum_probs=52.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE----eCcCChHHHHHHHHHHhcc--------CCcchhcccCCH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV----SANLDPYVILDNILKIMMP--------QSALREIMGKGF 148 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv----s~~~~~~~~~~~il~~l~~--------~~~~~~~~~~~~ 148 (221)
-.-++|.|.+|+||||||+.+++ .++.+|...+++ .+...+.++..++...-.. ..+.+.....-.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35578999999999999999998 455456444444 4444556666666543111 011100000011
Q ss_pred HHHHHHHHHHh--C-CceEEEEEeCCC
Q 040890 149 RQRKTALHDYL--K-NKRYLIVLEDVL 172 (221)
Q Consensus 149 ~~l~~~l~~~L--~-~kr~LlVlDdv~ 172 (221)
....-.+.+++ + ++.+||++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 12223455555 3 899999999984
No 242
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.71 E-value=0.0011 Score=53.48 Aligned_cols=61 Identities=10% Similarity=0.266 Sum_probs=37.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|-.+.-+++||+-- +......+...+.. ...|..||++|++.+.+..++ ++++.+
T Consensus 158 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~---d~i~~~ 222 (224)
T TIGR02324 158 VNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVA---DRVMDV 222 (224)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---ceeEec
Confidence 34555566677899999864 33333333333321 123677999999988887654 355554
No 243
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.71 E-value=0.001 Score=51.21 Aligned_cols=118 Identities=12% Similarity=0.103 Sum_probs=67.1
Q ss_pred eehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC----cCCC--------------CCCCeEEEE-eC---
Q 040890 62 MLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS----DYVK--------------SYFHCHAWV-SA--- 119 (221)
Q Consensus 62 G~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~--------------~~F~~~~wv-s~--- 119 (221)
|-+...+.|.+.+..+. -...+.++|+.|+||+++|..+.+. .... .......|+ ..
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 34556667777776643 3456788999999999999876542 1110 112223333 11
Q ss_pred -cCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEE
Q 040890 120 -NLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAM 196 (221)
Q Consensus 120 -~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivT 196 (221)
....++ .+++...+.... ..++.=++|+|++. +.+..+.|+..+-....++.+|++
T Consensus 80 ~~i~i~~-ir~i~~~~~~~~--------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 KSIKIDQ-IREIIEFLSLSP--------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp SSBSHHH-HHHHHHHCTSS---------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred chhhHHH-HHHHHHHHHHHH--------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 111211 113333222111 02456688999997 578888888888766778888888
Q ss_pred cCChH
Q 040890 197 LTSNE 201 (221)
Q Consensus 197 TR~~~ 201 (221)
|.+.+
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 87654
No 244
>PRK13409 putative ATPase RIL; Provisional
Probab=97.71 E-value=0.00046 Score=63.78 Aligned_cols=133 Identities=13% Similarity=0.141 Sum_probs=70.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCCeE-EEEeCcC------ChHHHH-------------HHHHHHhcc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFHCH-AWVSANL------DPYVIL-------------DNILKIMMP 136 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~-~wvs~~~------~~~~~~-------------~~il~~l~~ 136 (221)
.-.+++|+|+.|+|||||++.+........ .++.. .++++.. ++.+.+ .++++.++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 347899999999999999999987422111 01111 2232221 222222 223333332
Q ss_pred CCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCC---ChH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 137 QSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL---TNE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 137 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
.......... .-+...-.+...|....-+++||.-- |.. ....+...+.. ..|..||++|++...+..++
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~a- 521 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYIS- 521 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHhC-
Confidence 1110111111 23333445677777888999999754 222 22233333321 23667999999988877764
Q ss_pred CCCceEec
Q 040890 209 DNDLMFTL 216 (221)
Q Consensus 209 ~~~~v~~l 216 (221)
++++.|
T Consensus 522 --Drvivl 527 (590)
T PRK13409 522 --DRLMVF 527 (590)
T ss_pred --CEEEEE
Confidence 345544
No 245
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.00085 Score=56.85 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=70.3
Q ss_pred ceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCC---C----------------CCeEEEE--
Q 040890 59 RCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---Y----------------FHCHAWV-- 117 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~----------------F~~~~wv-- 117 (221)
.++|-+.....+..+..........+.++|+.|+||||+|..+.+..--.. . .+....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 456777888888888875443344588999999999999988766311000 0 1112222
Q ss_pred eCcCC---hHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeE
Q 040890 118 SANLD---PYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSR 192 (221)
Q Consensus 118 s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~ 192 (221)
+.... ..+..+++.+...... ..++.-++++|++.. .+.-+.+...+......+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~--------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP--------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC--------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 11111 1222222222221110 025677899999974 4556667666666667788
Q ss_pred EEEEcC
Q 040890 193 VLAMLT 198 (221)
Q Consensus 193 IivTTR 198 (221)
+|++|.
T Consensus 142 ~il~~n 147 (325)
T COG0470 142 FILITN 147 (325)
T ss_pred EEEEcC
Confidence 888876
No 246
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.71 E-value=0.00052 Score=54.55 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhh
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~ 205 (221)
.-.+...|-.+.-+++||+-- +......+...+.. ...|..||++|++......
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 199 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQ 199 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 344666677788999999865 33333333333321 1236789999999887653
No 247
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.71 E-value=0.00047 Score=55.85 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998863
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.70 E-value=0.00025 Score=60.23 Aligned_cols=124 Identities=12% Similarity=0.105 Sum_probs=66.1
Q ss_pred ehhhHHHHHHHHhcCC--CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcc
Q 040890 63 LLEDLKELLNQLIEGP--PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSAL 140 (221)
Q Consensus 63 ~~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~ 140 (221)
+........+++..-. ....-+.++|..|+|||.||.++.+... ...+.+ .++ ....++.++.......
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v-~~~----~~~~l~~~lk~~~~~~--- 206 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSS-TLL----HFPEFIRELKNSISDG--- 206 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCE-EEE----EHHHHHHHHHHHHhcC---
Confidence 3333444455554321 1345688999999999999999988532 223333 344 2334555555443210
Q ss_pred hhcccCCHHHHHHHHHHHhCCceEEEEEeCCC--ChHHHHH--Hhhhc-CCC-CCCeEEEEEcCC--hHHHhhc
Q 040890 141 REIMGKGFRQRKTALHDYLKNKRYLIVLEDVL--TNEVRKY--LGEAL-PDR-HNGSRVLAMLTS--NEIFRFC 206 (221)
Q Consensus 141 ~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~--l~~~l-~~~-~~gs~IivTTR~--~~va~~~ 206 (221)
...+.++. + .+--||||||+- ....|.. +...+ ... ..+..+|+||-- +++..++
T Consensus 207 ------~~~~~l~~----l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKIDA----V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHHH----h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 22222222 2 356699999996 3455643 44433 211 234557888853 3344443
No 249
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00068 Score=59.27 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC---hHHH----HHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVLT---NEVR----KYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~~---~~~~----~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
+..-.|.+.|..+.-+|+||+--+ ...- ..|..... ..|..+|++|++.+-+..++ ++++.|
T Consensus 155 ~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--~~g~tii~vTHd~~ea~~la---Dri~vl 223 (377)
T PRK11607 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE--RVGVTCVMVTHDQEEAMTMA---GRIAIM 223 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHHhC---CEEEEE
Confidence 334456777778888999998652 2222 22323322 23677999999998777664 445444
No 250
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.70 E-value=0.00055 Score=62.17 Aligned_cols=132 Identities=14% Similarity=0.030 Sum_probs=69.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CC---------------CeEEEEeCc------CChH-----------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YF---------------HCHAWVSAN------LDPY----------- 124 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F---------------~~~~wvs~~------~~~~----------- 124 (221)
.-.+++|+|+.|+|||||++.+........ .| ....++.+. .++.
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 357899999999999999999976321100 00 012344221 1111
Q ss_pred ---HHHHHHHHHhccCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEE
Q 040890 125 ---VILDNILKIMMPQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRV 193 (221)
Q Consensus 125 ---~~~~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~I 193 (221)
+-..+++..++.......... +.-+...-.+...|..++-+|+||.-.+ . ..+..+...+. ..|..|
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~ti 193 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL--AQGVGI 193 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HCCCEE
Confidence 122334444433211111111 1223333456666667888999997642 2 22223322332 236779
Q ss_pred EEEcCChHHHhhccCCCCceEec
Q 040890 194 LAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 194 ivTTR~~~va~~~~~~~~~v~~l 216 (221)
|++|++.+.+..++ ++++.|
T Consensus 194 iivtHd~~~~~~~~---d~i~~l 213 (510)
T PRK15439 194 VFISHKLPEIRQLA---DRISVM 213 (510)
T ss_pred EEEeCCHHHHHHhC---CEEEEE
Confidence 99999988776554 345544
No 251
>PRK06696 uridine kinase; Validated
Probab=97.70 E-value=5.7e-05 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=33.8
Q ss_pred ehhhHHHHHHHHhc-CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 63 LLEDLKELLNQLIE-GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 63 ~~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
|++-+++|.+.+.. ......+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56677788888764 334688999999999999999999887
No 252
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.70 E-value=0.0012 Score=53.64 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-...|.+.+.-.+-||++|.-- ....+++|...+.+. -|+.+++.|++-+-+..++ ++++-|
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~-lg~T~i~VTHDl~s~~~i~---Drv~~L 219 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA-LGLTVIMVTHDLDSLLTIA---DRVAVL 219 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh-hCCEEEEEECChHHHHhhh---ceEEEE
Confidence 33456788888889999999754 357788887777754 5788899999888887775 556554
No 253
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00054 Score=56.88 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
..-.+...|..++-+++||+-- +...-..+...+.. ...|..||++|++.+....++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~ 215 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYC 215 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3445666677788999999865 33333333333321 123667999999888766543
No 254
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.70 E-value=3.6e-05 Score=66.32 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCceeeehhhHHHHHHHHhcC----CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG----PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999652 235689999999999999999998764
No 255
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.70 E-value=0.00065 Score=56.05 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-+++||..- +....+.+...+.. ...|..||++|++.+....++ ++++.|
T Consensus 145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l 210 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYC---DHVVVL 210 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 344666666788899999865 33333333333322 123667999999988876654 344444
No 256
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=2.9e-05 Score=56.32 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 257
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00059 Score=57.07 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...|..++-+|+||+.. |...-..+...+.. ...|..||++|.+.+.+..++
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~ 205 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMA 205 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 33445677777788899999875 33333333333321 123667899998877765543
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.69 E-value=0.00082 Score=54.53 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.|+.|+|||||++.+...
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999999874
No 259
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.69 E-value=0.00055 Score=56.96 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999763
No 260
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.69 E-value=0.00023 Score=68.47 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=36.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.++||+.++..++..|..... .-+.++|++|+|||++|..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999977542 3344799999999999998876
No 261
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.69 E-value=0.0011 Score=55.24 Aligned_cols=54 Identities=6% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 154 ALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.+...+...+-+++||+.-+ ...-..+...+.. ...|..||++|++...+..++
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~ 210 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFC 210 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHc
Confidence 45666677888999998752 2222222222211 124678999999988776654
No 262
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.69 E-value=0.00061 Score=55.45 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=58.9
Q ss_pred HHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcch---------
Q 040890 71 LNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALR--------- 141 (221)
Q Consensus 71 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~--------- 141 (221)
=++|..+=+..+++.|+|.+|+|||+||.++... ..+. =..++|++-..+..++++++. +++......
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~~~~~~~~~~-~~g~~~~~~~~~g~l~i~ 91 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENTSKSYLKQME-SVKIDISDFFLWGYLRIF 91 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCCHHHHHHHHH-HCCCChhHHHhCCCceEE
Confidence 3334334466789999999999999999887432 1222 235677744455566666543 333211000
Q ss_pred ----h--cccC-CHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 040890 142 ----E--IMGK-GFRQRKTALHDYLKN-KRYLIVLEDVL 172 (221)
Q Consensus 142 ----~--~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~ 172 (221)
. .... +...+...+.+.+.. +.-++|+|.+-
T Consensus 92 ~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 92 PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0 0112 456777777777754 55689999864
No 263
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00055 Score=57.44 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.++-+|+||... +......+...+.. ...|..||++|++.+.+..++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~ 209 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYC 209 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 344666677788899999875 33333333333321 123677999999888776543
No 264
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.68 E-value=0.00063 Score=59.00 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 265
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.68 E-value=0.00083 Score=54.34 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999999864
No 266
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.68 E-value=0.00059 Score=59.18 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=67.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCC---C------------CeEEEEeCcC------ChH---------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---F------------HCHAWVSANL------DPY--------------- 124 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F------------~~~~wvs~~~------~~~--------------- 124 (221)
-.+++|.|++|+|||||.+.+..-...... | ....++.+.+ ++.
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~ 109 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA 109 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHH
Confidence 468999999999999999999863221100 0 0122222221 111
Q ss_pred ---HHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEE
Q 040890 125 ---VILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRV 193 (221)
Q Consensus 125 ---~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~I 193 (221)
....++++.++... ..+...+ .-++..-.+.+.|..+.-+++||.-- +...-..+...+.. ...|..+
T Consensus 110 ~~~~~~~~~l~~l~L~~~~~~~~~~LS-gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv 188 (353)
T TIGR03265 110 EVAERVAELLDLVGLPGSERKYPGQLS-GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188 (353)
T ss_pred HHHHHHHHHHHHcCCCchhhCChhhCC-HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 12333444443321 1111122 22333445667777788889999764 22222333322221 1236779
Q ss_pred EEEcCChHHHhhcc
Q 040890 194 LAMLTSNEIFRFCR 207 (221)
Q Consensus 194 ivTTR~~~va~~~~ 207 (221)
|++|++.+-+..++
T Consensus 189 i~vTHd~~ea~~l~ 202 (353)
T TIGR03265 189 IMVTHDQEEALSMA 202 (353)
T ss_pred EEEcCCHHHHHHhC
Confidence 99999998877665
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.67 E-value=0.00018 Score=54.27 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=25.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLD 122 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~ 122 (221)
++.|+|.+|+||||++..+... ....-...+|++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcc
Confidence 3678999999999999988763 2223345566633333
No 268
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.67 E-value=0.00057 Score=55.09 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=51.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCC----CCCeEEEE--eCcCChHHHHHHHHHHhccCCc-chh---cccC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS----YFHCHAWV--SANLDPYVILDNILKIMMPQSA-LRE---IMGK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~-~~~---~~~~-~ 147 (221)
+.-.++.|+|.+|+|||+||..+........ .=...+|+ ...++... +.++......... ... -... +
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPER-LVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHH-HHHHHHHhccchhhhhccEEEEeCCC
Confidence 5578999999999999999988765211111 01355788 33445443 3344443322100 000 0111 4
Q ss_pred HHHHHHHHHHHhC----CceEEEEEeCCC
Q 040890 148 FRQRKTALHDYLK----NKRYLIVLEDVL 172 (221)
Q Consensus 148 ~~~l~~~l~~~L~----~kr~LlVlDdv~ 172 (221)
.+++...+...+. .+.-|||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 5555555555543 345699999975
No 269
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.67 E-value=0.00096 Score=55.06 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.+.-+++||.-- +......+...+.. ...|..||++|++...+..++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~ 219 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS 219 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 344666666777899999764 33333333333221 124777999999888877654
No 270
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.67 E-value=7.9e-05 Score=59.51 Aligned_cols=53 Identities=19% Similarity=0.047 Sum_probs=32.6
Q ss_pred eeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE
Q 040890 61 VMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV 117 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 117 (221)
.++..+....++.|.+ ..++.+.|++|+|||.||....-+.-....|+..+++
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455666777777773 5688999999999999996554322223667777777
No 271
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00079 Score=61.80 Aligned_cols=134 Identities=10% Similarity=-0.056 Sum_probs=73.4
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCC---CCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVK---SYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
-.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-. ..+.|... ...+.|...
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C--------~~C~~i~~~ 85 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC--------SSCKSIDND 85 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc--------hHHHHHHcC
Confidence 4578999999999999998754 34567899999999999999887631111 11111100 000111110
Q ss_pred hccCCcchhcccC----CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 134 MMPQSALREIMGK----GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 134 l~~~~~~~~~~~~----~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
-...-..-..... +..++.+.+... ..+++-++|+|++. +...++.|...+......+.+|++|.+
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000000000000 222222222211 13566689999986 566788888887755556666666543
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.67 E-value=0.0004 Score=56.34 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCC----CCeEEEE--eCcCChHHHHHHHHHHhccCCcc-hhc------cc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY----FHCHAWV--SANLDPYVILDNILKIMMPQSAL-REI------MG 145 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~-~~~------~~ 145 (221)
+.-.++.|+|.+|+|||+||.++.-....... -...+|+ ...++... +.++++..+..... ... .+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~r-l~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPER-LVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHH-HHHHHHHhccChHhHhcCEEEEecCC
Confidence 55789999999999999999888642122211 2567888 34445433 34444443321110 000 01
Q ss_pred C-CHHHHHHHHHHHhC-C-ceEEEEEeCCC
Q 040890 146 K-GFRQRKTALHDYLK-N-KRYLIVLEDVL 172 (221)
Q Consensus 146 ~-~~~~l~~~l~~~L~-~-kr~LlVlDdv~ 172 (221)
. +...+...+.+.+. . +--|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1 23344455555553 3 56799999985
No 273
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.00095 Score=62.31 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
..-.|...|-.++-+|+||.--+ ...-..|...+... +..||++|++...+..++ ++++.|.
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~---d~i~~L~ 220 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIV---DKIIHIE 220 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhc---CEEEEEe
Confidence 34456666777888999997652 22223333333322 236999999988887765 3455543
No 274
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.66 E-value=0.00077 Score=56.11 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...|-.++-+|+||+-- +......+...+.. ...|..||++|++......++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~ 219 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhC
Confidence 33345666777788999999865 33333333333321 122677899998888776654
No 275
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00054 Score=55.82 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||.+.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 31 GEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 578999999999999999998763
No 276
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.66 E-value=0.00064 Score=58.93 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..+.-+|+||.-- |...-..+...+.. ...|..+|++|++.+-+..++ ++++-|
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~---Dri~vl 210 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVA---DRVVVM 210 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 3345677777788899999864 23333333333221 233677999999998887775 445544
No 277
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.66 E-value=0.00053 Score=64.95 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=37.3
Q ss_pred CCceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.++.++.|.+.+... +....++.++|+.|+|||+||+.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 456899999999998887631 12244678999999999999999987
No 278
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.66 E-value=3.9e-05 Score=61.10 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=29.8
Q ss_pred CceEEEEEeCCCC---h---HHH-HHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 161 NKRYLIVLEDVLT---N---EVR-KYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 161 ~kr~LlVlDdv~~---~---~~~-~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
..+-++++|..-. . ..+ ..+...+. ..++.+|++|++.+++..+.
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHhh
Confidence 5788999998752 1 111 22223332 23677999999999999876
No 279
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.66 E-value=0.00071 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999864
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00074 Score=61.01 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 149 RQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
++..-.+...+..++-+|+||+-- ......++...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~--~~~~tvi~vsHd~~~~~~~~---d~v~~l 464 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA--KKDKGIIIISSEMPELLGIT---DRILVM 464 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH--HCCCEEEEECCChHHHHhhC---CEEEEE
Confidence 334445666777788899999653 2233333333333 23666999999988777664 455555
No 281
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.65 E-value=0.00058 Score=56.68 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...+-.++-+++||..- +...-..+...+.. ...|..||++|++.+.+..++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~ 211 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYA 211 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 334556666778899999865 33333333333321 123667999999988666554
No 282
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00088 Score=54.45 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC--CCCeEEEEEcCChHHHhhc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR--HNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~ 206 (221)
-.+...+..++-+++||..- |...-..+...+..- ..|..||++|++.+.+..+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 34566666788899999865 233333333333221 2367799999998877665
No 283
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.65 E-value=0.00024 Score=65.77 Aligned_cols=48 Identities=8% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCceeeehhhHHHHHHHHhcCC---CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGP---PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+++|-+..++++..+|.... ....++.++|++|+||||+++.+.+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987532 23467999999999999999999873
No 284
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00066 Score=58.23 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-|||+|..- |......+...|.. ...|..||++|.+..++..++ ++++.|
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~a---drv~vm 228 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIA---DEVMVM 228 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 345666666778899999865 22323333333321 123678999999999998765 345444
No 285
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.65 E-value=0.00026 Score=55.02 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=28.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV 117 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 117 (221)
...+|.++|+.|+||||+|+.+++ .....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 457899999999999999999988 444455555555
No 286
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.65 E-value=0.00055 Score=65.93 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=37.6
Q ss_pred CCceeeehhhHHHHHHHHhcC------C-CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG------P-PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.+..++.+.+.+... . ....++.++|+.|+|||+||+.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999988642 1 1245678999999999999999887
No 287
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.00028 Score=67.67 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=36.2
Q ss_pred CCceeeehhhHHHHHHHHhc-------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIE-------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|-+..++.|.+.+.. .+.....+.++|+.|+|||+||+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46689999999999888752 112234567899999999999988776
No 288
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.64 E-value=0.00073 Score=54.54 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=37.4
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.+...|-.++-+|+||+-- +....+.+...+.. ...|..||++|++.+.+..++ ++++.|.
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~ 220 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIA---DRVAVMY 220 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CeEEEEe
Confidence 4555666778899999865 33333333333322 122667999999988877654 4566554
No 289
>PRK07667 uridine kinase; Provisional
Probab=97.64 E-value=7.9e-05 Score=59.01 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+.|.+.+........+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666678999999999999999998876
No 290
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.63 E-value=0.00084 Score=58.40 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|....-+|+||+-- +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 138 V~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~---drI~vl 203 (363)
T TIGR01186 138 VGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIG---DRIVIM 203 (363)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 34667777888899999875 33333333333221 123667999999998776654 344444
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.63 E-value=0.00079 Score=61.00 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...-.+...|..++-+|+||.--+ . ..+..+...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvii~sHd~~~~~~~~---d~i~~l 214 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK--SQGRGIVYISHRLKEIFEIC---DDVTVF 214 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 334456667777888999997652 2 22222333333 23667999999987776654 345544
No 292
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.63 E-value=0.0008 Score=61.23 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=72.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcC-CCC-----CCCeEEEEeCcC------------------C-hHHHHHHHHHHh
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDY-VKS-----YFHCHAWVSANL------------------D-PYVILDNILKIM 134 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~-----~F~~~~wvs~~~------------------~-~~~~~~~il~~l 134 (221)
.-.-|+|+|+.|+|||||.+.+..... ... .--...++.|.. + .+.-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 346689999999999999999955211 111 001112231111 1 134444445444
Q ss_pred ccCCcch-hcccC--CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 135 MPQSALR-EIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 135 ~~~~~~~-~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
+-..+.. ..+.. .-+...-.+...+-.+.-|||||.-- +.+..+.|..+|.+. +|+ ||++|++.......+.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va~ 504 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhcc
Confidence 4322211 11122 33333445666677899999999654 344555555555432 355 8999999999988863
No 293
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.63 E-value=0.00071 Score=61.11 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+...
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999763
No 294
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00068 Score=56.49 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999998864
No 295
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.00051 Score=56.33 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...|..+.-+++||+.- +...-..+...+.....|..||++|++.+.+..++
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~ 208 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVA 208 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhC
Confidence 33445667777788899999865 22222333333322122667999999888666554
No 296
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.0011 Score=55.30 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998763
No 297
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.62 E-value=0.0012 Score=53.34 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999998763
No 298
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00084 Score=56.55 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||+..+ ...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~---drv~~l 219 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYA---DQIVVM 219 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 3456777778889999998763 2222333332321 123677999999988776654 344444
No 299
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.62 E-value=0.0011 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||.+.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999763
No 300
>CHL00176 ftsH cell division protein; Validated
Probab=97.62 E-value=0.00028 Score=65.62 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=33.7
Q ss_pred CceeeehhhHHHHHHHH---hcCC-------CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQL---IEGP-------PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+++|.++..+++.+.+ .... ...+-+.++|++|+|||+||+.+.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46788877766665554 2211 22445889999999999999999883
No 301
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.62 E-value=0.0012 Score=53.78 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=36.2
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..+.-+++||+.. +......+...+.....|..||++|.+.+.+..| ++++.|
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~----d~v~~l 210 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNA----DLIAVL 210 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC----CEEEEE
Confidence 34566666777899999875 3333333333332212467799999888877643 345544
No 302
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00098 Score=54.29 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999998763
No 303
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.001 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3578999999999999999998874
No 304
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=0.0012 Score=55.66 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..++-+|+||+.- +......+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~---dri~~l 217 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYA---DYVYLL 217 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 3345666777788899999865 33333333333321 123678999999988775543 345544
No 305
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.0012 Score=55.40 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..+.-+|+||...+ ...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~---dri~~l 219 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYA---DEVIVM 219 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 34456777777888999998752 2222223222221 124778999999987665553 345544
No 306
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.60 E-value=0.00092 Score=60.74 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..+.-||+||.-- +......+...+.. .|..||++|++.+.+..++ ++++.|.
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tiIivsHd~~~i~~~~---d~i~~l~ 477 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA--QNVAVLFISSDLEEIEQMA---DRVLVMH 477 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhC---CEEEEEE
Confidence 334555666678899999754 22333333333332 3667999999988887765 4555553
No 307
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.60 E-value=0.00099 Score=54.21 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
.+...|-.++-+++||+.. +......+...+..-..|..||++|++.+.+..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 4555555677899999875 333333333333221236779999999988764
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00061 Score=61.84 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.--+ . ..+..+...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivsHd~~~~~~~~---d~v~~l 218 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR--KEGTAIVYISHKLAEIRRIC---DRYTVM 218 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 3456666777888999997652 2 22223333333 23677999999988877664 345444
No 309
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00086 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+..-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999998763
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.0013 Score=59.96 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=70.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC---eEEEEeCc----C----ChHHH-------------HHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH---CHAWVSAN----L----DPYVI-------------LDNILK 132 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~---~~~wvs~~----~----~~~~~-------------~~~il~ 132 (221)
.-.+++|+|+.|+|||||++.++....... .|+ ...++++. + ++.+. ...++.
T Consensus 344 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~ 423 (530)
T PRK15064 344 AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLG 423 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHH
Confidence 357899999999999999999987422111 121 12344221 1 12221 223333
Q ss_pred HhccCC-cchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 133 IMMPQS-ALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 133 ~l~~~~-~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
.++... ........ .-+...-.+...|..++-+|+||.--+ ...-+.+...+... .+ .||++|++.+.+..+
T Consensus 424 ~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~ 501 (530)
T PRK15064 424 RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL 501 (530)
T ss_pred HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence 333211 00001111 223333456666777888999997652 22233333333222 24 699999999888776
Q ss_pred cCCCCceEecc
Q 040890 207 RLDNDLMFTLI 217 (221)
Q Consensus 207 ~~~~~~v~~l~ 217 (221)
+ ++++.|.
T Consensus 502 ~---d~i~~l~ 509 (530)
T PRK15064 502 A---TRIIEIT 509 (530)
T ss_pred C---CEEEEEE
Confidence 5 4555553
No 311
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.0011 Score=53.71 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
..-.+...|..++-+++||+.- +....+.+...+..-..|..||++|++.+....|
T Consensus 145 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 203 (234)
T cd03251 145 QRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA 203 (234)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence 3345566666677799999875 3333333333332212356788999888777653
No 312
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00098 Score=60.24 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..++-+|+||.-. |...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 143 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~---d~i~~l 207 (491)
T PRK10982 143 IEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLC---DEITIL 207 (491)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 34666666778899999865 22222223222211 124667999999887776654 345544
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00037 Score=65.99 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=36.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.++||+.++..+++.|..... .-+.++|++|+|||+||+.+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHH
Confidence 5689999999999998887432 3335799999999999999876
No 314
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.59 E-value=0.00058 Score=60.73 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=34.6
Q ss_pred ceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++.|.+..+++|.+.+... -....-+.++|++|+|||+||+.+.+
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568888888888776321 12345677899999999999999998
No 315
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.0013 Score=58.04 Aligned_cols=62 Identities=8% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.-- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 172 Rv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~---Dri~vL 238 (400)
T PRK10070 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG---DRIAIM 238 (400)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC---CEEEEE
Confidence 344666677788899999865 22222222222221 123667999999988776654 345444
No 316
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.59 E-value=0.00046 Score=54.27 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998763
No 317
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.0015 Score=54.99 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=34.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..++-+|+||.-.+ . ..+..+...+. ..|..||++|++.+.+...+
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~--~~g~tvlivsH~~~~~~~~~ 212 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ--KAGHTVILVTHNMDDVAEYA 212 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhC
Confidence 3446666777888999998652 2 22333333332 24778999999988776554
No 318
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.58 E-value=0.00064 Score=58.69 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
...+.|.|+.|+||||+++.+.+ .+..+...+++. ..+... ..... ..+....+ ...+.....+.++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiEdp~E~--~~~~~-~~~i~q~e----vg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIEDPIEY--VHRNK-RSLINQRE----VGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEcCChhh--hccCc-cceEEccc----cCCCCcCHHHHHHHhh
Confidence 47799999999999999998887 344445556666 332111 00000 00000000 0112234566678888
Q ss_pred CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 160 KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 160 ~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
+...=.|++|.+.+.+.+.....+. ..|..++-|....+++.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHHH
Confidence 8899999999999887776543332 33555777777655443
No 319
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0012 Score=56.19 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-+|+||..-+ .. .+-.+...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 173 rvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~~a---drv~vl 238 (305)
T PRK13651 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN--KQGKTIILVTHDLDNVLEWT---KRTIFF 238 (305)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeeCHHHHHHhC---CEEEEE
Confidence 3457777778889999998652 22 2222222332 23777999999987555443 345544
No 320
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.002 Score=52.39 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+++||+.. +......+...+..-..|..||++|++.+....| ++++.|
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~----d~~~~l 208 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA----DKIIVL 208 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhC----CEEEEE
Confidence 345667777888999999875 3333343433333211266789999888877653 355554
No 321
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0012 Score=55.56 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 149 RQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
+...-.+...|..++-+|+||+-- +......+...+.. ...|..||++|++.+.+..++
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~ 212 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLA 212 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 334456777777888999999865 23333333333321 123667999999877665543
No 322
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.58 E-value=0.0013 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.|+.|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999863
No 323
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00084 Score=55.91 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999763
No 324
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.58 E-value=0.00065 Score=59.96 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=75.8
Q ss_pred CCCceeeehhhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCc-CChHHHHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SAN-LDPYVILDNIL 131 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~-~~~~~~~~~il 131 (221)
.+..++||+.+++.+.+++... .....-+-|.|.+|.|||.+...++.+......-.+++++ .-. .....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 3667999999999999998652 2345667789999999999999888852221111245666 333 45667888888
Q ss_pred HHhccCCcchhcccCCHHHHHHHHHHHhCC--ceEEEEEeCCC
Q 040890 132 KIMMPQSALREIMGKGFRQRKTALHDYLKN--KRYLIVLEDVL 172 (221)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVlDdv~ 172 (221)
..+...... .....+..+.+...... +.+|+|||.++
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 777332111 11335566666666643 35899999875
No 325
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00078 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 38 Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 38 NSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999863
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.57 E-value=0.0019 Score=60.31 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...-.|...|-.++-+|+||.--+ ...-..|...|... .+ .||++|++...+..++ ++++.|
T Consensus 162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~-~~-tvlivsHd~~~l~~~~---d~i~~L 226 (635)
T PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QG-SIIFISHDRSFIRNMA---TRIVDL 226 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhc---CeEEEE
Confidence 334456666777888999997652 23333333333322 23 6999999988887765 345554
No 327
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.57 E-value=0.0016 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999998864
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.57 E-value=0.00062 Score=54.70 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=48.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccC-CcchhcccC-CH---HHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQ-SALREIMGK-GF---RQRKT 153 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~-~~~~~~~~~-~~---~~l~~ 153 (221)
+.-.++.|.|.+|+||||||.++... ....-...+|++......+-+++++...... ...-.-.+. +. .....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 55789999999999999999887653 2122235567722211123334444321000 000000011 22 22333
Q ss_pred HHHHHhCCceEEEEEeCCC
Q 040890 154 ALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~ 172 (221)
.+...+..+.-++|+|.+.
T Consensus 95 ~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 95 ETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHhcCCcEEEEechH
Confidence 4555555556799999874
No 329
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.57 E-value=0.0014 Score=52.20 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|-.++-+++||+.. +....+.+...+.....|..+|++|++.+.+..| ++++.|.
T Consensus 134 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~----d~v~~l~ 197 (207)
T cd03369 134 LCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY----DKILVMD 197 (207)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC----CEEEEEE
Confidence 34555666678889999875 3333344433333222367788888888877543 4555553
No 330
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.57 E-value=0.00091 Score=55.37 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCC--CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDR--HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~--~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..++-||+||+-- |......+...+..- ..|..||++|++.+.+..++ ++++.|
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~---d~i~~l 226 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC---ERIVAL 226 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 34556666777899999864 233333333333321 23678999999998766554 345444
No 331
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.57 E-value=0.00013 Score=54.49 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=58.8
Q ss_pred eeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCC-CCCCCeEEEEeCcCChHHHHHHHHHHhccCCc
Q 040890 61 VMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV-KSYFHCHAWVSANLDPYVILDNILKIMMPQSA 139 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~ 139 (221)
||.-..++.+.+.+..-.....-|.|+|..|+||+++|+.++..... ...|...-+ ...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~--~~~------------------ 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC--ASL------------------ 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH--HCT------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech--hhC------------------
Confidence 45556677777766543233466789999999999999999884332 122221100 000
Q ss_pred chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC--ChHHHHHHhhhcCC-CCCCeEEEEEcCCh
Q 040890 140 LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL--TNEVRKYLGEALPD-RHNGSRVLAMLTSN 200 (221)
Q Consensus 140 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~ 200 (221)
+ .++. .. .+.--|+|+|+. +.+....|...+.. .....|+|.||...
T Consensus 61 -------~-~~~l---~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 61 -------P-AELL---EQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------C-HHHH---HH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------c-HHHH---HH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 1111 11 144457788886 45555556555542 25678999998743
No 332
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.56 E-value=0.0015 Score=52.83 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|-.++-+++||+-. +......+...+..-..+..||++|++.+.+..| ++++.|.
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----d~i~~l~ 222 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA----DQILVLD 222 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhC----CEEEEec
Confidence 34566666788899999865 3333333333322111235688888888777542 5676664
No 333
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.56 E-value=0.0017 Score=52.52 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCc
Confidence 3578999999999999999999764
No 334
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.0011 Score=55.47 Aligned_cols=63 Identities=5% Similarity=0.016 Sum_probs=39.1
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..+.-+|+||+-- +....+.+...+..-..+..||++|++...+..++ ++++.|+
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~ 234 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVA---DWTAFFN 234 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 344566666788899999865 33333333333322122467999999998887764 4666664
No 335
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.0025 Score=51.85 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=63.5
Q ss_pred CceeeehhhHHHHHHHH---hcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHh
Q 040890 58 ERCVMLLEDLKELLNQL---IEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
..++|.+...+.|++=- .++- ...-+.+||..|.|||.|++++++ .+....-.-+=|. ++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~---------k~----- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVD---------KE----- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEc---------HH-----
Confidence 45799999888886533 3333 345567899999999999999988 3433322111110 00
Q ss_pred ccCCcchhcccC-CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC
Q 040890 135 MPQSALREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD 186 (221)
Q Consensus 135 ~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~ 186 (221)
+. +...+.+.|+. ...||+|+.||+. ....+..|+..|-.
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 01 33333333333 4689999999996 46778888888763
No 336
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.0028 Score=51.23 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..++-+++||+-. +....+.+...+..-..|..||++|++......| ++++.|
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----d~i~~l 210 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA----DKILVL 210 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC----CEEEEE
Confidence 3445666677788899999865 3333333333332212366799999988877643 345544
No 337
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.001 Score=60.31 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCceeeehhhHHHHHHHHh---c-------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLI---E-------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.++..+++.+++. . +....+-+.++|++|+|||+||+.+.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3567888777766655443 2 1122345778999999999999999884
No 338
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=0.0002 Score=55.63 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=24.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCC-CCCCeEEEE
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVK-SYFHCHAWV 117 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv 117 (221)
-|.|+|++|+||||||+.+.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 47899999999999999987642221 134555554
No 339
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0014 Score=54.08 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...+..++-+++||+-- |....+.+...+.. ...|..||++|++.+.+..++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 34566666778899999865 33333333333321 123667999999888766554
No 340
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.001 Score=55.67 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhh
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~ 205 (221)
.-.+...|-.++-+++||.-- +......+...+.. ...|..||++|++.+.+..
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 344666667788899999865 33333344333332 1247779999998887764
No 341
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0012 Score=55.33 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..++-+|+||+.- +......+...+.. ...|..||++|++.+.+..++
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~ 212 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYA 212 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhC
Confidence 34566666788899999865 23333333333221 123677999999988776554
No 342
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0013 Score=59.61 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=36.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT------NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.--+ ......+...+.. .|..||++|++.+.+..++ ++++.|
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvi~~sHd~~~~~~~~---d~v~~l 478 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ--QGVAIIVISSELPEVLGLS---DRVLVM 478 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHhC---CEEEEE
Confidence 3445556666778999997542 2333333333432 3667999999988776654 345554
No 343
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.54 E-value=0.0017 Score=54.68 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCceeeehh---hHHHHHHHHhcCC-CCceEEEEEccCCCcHHHHHHHHhcC-cCCC----CCCCeEEEE--eCcCChHH
Q 040890 57 KERCVMLLE---DLKELLNQLIEGP-PQLSVVAVIDSYGFDKAVFAAEAYNS-DYVK----SYFHCHAWV--SANLDPYV 125 (221)
Q Consensus 57 ~~~~vG~~~---~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~----~~F~~~~wv--s~~~~~~~ 125 (221)
.+..+|... -++.|.++|.... ....-+.|+|.+|.|||++++.+... +... ..+ .++.| ...++...
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH
Confidence 456667533 4445555555433 34567899999999999999988753 1111 111 23344 77889999
Q ss_pred HHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhCC-ceEEEEEeCCCC
Q 040890 126 ILDNILKIMMPQSALREIMGKGFRQRKTALHDYLKN-KRYLIVLEDVLT 173 (221)
Q Consensus 126 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVlDdv~~ 173 (221)
+...|+.+++...... .....+.......|+. +--+||+|.+.+
T Consensus 112 ~Y~~IL~~lgaP~~~~----~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 112 FYSAILEALGAPYRPR----DRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHhCcccCCC----CCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999998754321 1333444444455532 445889999864
No 344
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.54 E-value=0.0012 Score=53.00 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999873
No 345
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.53 E-value=0.0021 Score=54.58 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 64 LEDLKELLNQLIEGP-PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 64 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.-.+.|.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345667778777653 56899999999999999999998874
No 346
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.53 E-value=0.0015 Score=57.61 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---Ch---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TN---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...|..++-+|+||.-- +. ..+-.+...+.. .|..||++|++.+.+..++
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~--~g~TIIivsHdl~~~~~~a 206 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYC 206 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhC
Confidence 33445667777888899999754 22 333344444432 3667999999988887665
No 347
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.0011 Score=55.56 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhh
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~ 205 (221)
.-.+...|..++-||+||+.- +......+...+.. ...|..||++|++.+.+..
T Consensus 148 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~ 206 (279)
T PRK13635 148 RVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ 206 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 345666667788899999875 33333333333322 1236789999998877754
No 348
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.53 E-value=0.0012 Score=55.11 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhh
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~ 205 (221)
.-.+...|..+.-+|+||+.- +......+...+.. ...|..||++|.+.+.+..
T Consensus 148 rv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 345666666777899999875 33333444333321 1236678888888887764
No 349
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.52 E-value=0.00075 Score=62.34 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|.+|+|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457799999999999999999875
No 350
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0013 Score=59.59 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+++||.-.+ . ....++...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvi~~tH~~~~~~~~~---d~v~~l 216 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK--AHGIACIYISHKLNEVKAIS---DTICVI 216 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHHhc---CEEEEE
Confidence 3345566667788999997652 2 22223333332 23667999999988777654 345544
No 351
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.52 E-value=0.0013 Score=54.51 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.+.-+|+||+.- +...-..+...+.. ...|..||++|++.+.+..++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~ 218 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC 218 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHh
Confidence 34566666677899999865 33332333333321 122667999999988877654
No 352
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00038 Score=63.24 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=62.0
Q ss_pred CceeeehhhHHHHHHHHhcCC----------CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHH
Q 040890 58 ERCVMLLEDLKELLNQLIEGP----------PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVIL 127 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~ 127 (221)
.++=|.+..+++|.+++..-. ...+=+.+||++|+|||.||+.+.++..+ .|-. |+ ..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf~~---is----Ap--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PFLS---IS----AP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ceEe---ec----ch---
Confidence 456789999999998886411 23455678999999999999999994333 4311 10 00
Q ss_pred HHHHHHhccCCcchhcccC-CHHHHHHHHHHHhCCceEEEEEeCCC
Q 040890 128 DNILKIMMPQSALREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 128 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~ 172 (221)
+|... +.+ .+..+-+.+.+.-..-.|++++|++.
T Consensus 258 -eivSG----------vSGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -EIVSG----------VSGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -hhhcc----------cCcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 11221 222 55666666667777889999999987
No 353
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.51 E-value=0.0039 Score=57.00 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=40.0
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999888653333455779999999999999999974
No 354
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.0018 Score=53.82 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999874
No 355
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.0018 Score=53.31 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999974
No 356
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.0015 Score=59.25 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..++-||+||.--+ . ..+.++...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviivsHd~~~~~~~~---d~i~~l 469 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA--AQGVAVLFVSSDLPEVLGVA---DRIVVM 469 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHhhC---CEEEEE
Confidence 33456666777888999997542 2 23333333333 23667999999988877665 345544
No 357
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.50 E-value=0.00097 Score=55.37 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++.+..++.. ..-+.+.|++|+|||+||+.+.+
T Consensus 11 ~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 11 TSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3444444443 23456899999999999999986
No 358
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.50 E-value=0.0028 Score=58.27 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|-.+.-+|+||.-.+ ......+...+.... + .||++|++.+.+..++ ++++.|
T Consensus 171 rv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~~---d~i~~l 233 (556)
T PRK11819 171 RVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNVA---GWILEL 233 (556)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhhc---CeEEEE
Confidence 3445566667778999998652 333333333333222 3 6999999998887765 345544
No 359
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.0014 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 65 Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 65 KYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999986
No 360
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.0013 Score=56.43 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=35.3
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..+.-|||+|.-- |...-..+...|.. ...|..||++|++..++..++
T Consensus 167 v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 167 VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA 226 (330)
T ss_pred HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 44677777888999999764 22222222222221 123778999999999987765
No 361
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.50 E-value=0.0014 Score=59.17 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+.-.|..+.-|||+|.-- +...-.+|...+.+ ...|..+|++|++-.|...++ |++.-|
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a---Drv~Vm 228 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA---DRVVVM 228 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc---CeEEEE
Confidence 346777788899999999754 22222222222221 346888999999999999986 445444
No 362
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.002 Score=53.86 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
.-.+...|-.++-+|+||.--+ .. .+-.+...+. ..|..||++|++.+.+..
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~g~til~~tH~~~~~~~ 201 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH--EKGKTIVYITHNLEELHD 201 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHhh
Confidence 3456677778889999998652 22 2222222232 247779999999888754
No 363
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.49 E-value=0.0022 Score=51.25 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHH-HHhhhcCCC-CC-CeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRK-YLGEALPDR-HN-GSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~-~l~~~l~~~-~~-gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.+...+..+.-+++||+.- +..... .+...+... .. |..||++|++.+....+ +.++.|.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~----d~i~~l~ 196 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA----DHIYRVE 196 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC----CEEEEEe
Confidence 4666777888999999875 333333 343333221 22 56699999998877543 4666664
No 364
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.0023 Score=52.60 Aligned_cols=55 Identities=5% Similarity=0.029 Sum_probs=33.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|..++-+++||+-- +......+...+.....+..||++|++...+..++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~ 213 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARAS 213 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhC
Confidence 34556666778899999864 33333333333322123677999999888777664
No 365
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.49 E-value=0.0012 Score=52.32 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999998764
No 366
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.0023 Score=52.51 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999985
No 367
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.48 E-value=0.0049 Score=48.94 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhh-cC-CCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEA-LP-DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~-l~-~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
...-.+...|..++-+++||+-- +....+.+... +. ....|..||++|++......+ ++++.|.
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~----d~i~~l~ 201 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA----DQIVVLD 201 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhC----CEEEEEe
Confidence 33445777777888999999864 33333333331 21 122377899999988877753 4566654
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.48 E-value=0.0018 Score=52.84 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred HHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCc------------
Q 040890 72 NQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSA------------ 139 (221)
Q Consensus 72 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~------------ 139 (221)
++|..+=+..+++.|.|.+|+|||+||.++... ..+ .-..++||+-..+..++.+.+.. ++....
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~~-~ge~~lyvs~ee~~~~i~~~~~~-~g~~~~~~~~~g~l~~~d 88 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQ-MGEPGIYVALEEHPVQVRRNMAQ-FGWDVRKYEEEGKFAIVD 88 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HHH-cCCcEEEEEeeCCHHHHHHHHHH-hCCCHHHHhhcCCEEEEe
Confidence 334334356789999999999999999765431 122 23457788555566676666443 221100
Q ss_pred ------------chhc-ccC-CHHHHHHHHHHHhCC-ceEEEEEeCCCC-----hH----HHHHHhhhcCCCCCCeEEEE
Q 040890 140 ------------LREI-MGK-GFRQRKTALHDYLKN-KRYLIVLEDVLT-----NE----VRKYLGEALPDRHNGSRVLA 195 (221)
Q Consensus 140 ------------~~~~-~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~-----~~----~~~~l~~~l~~~~~gs~Iiv 195 (221)
.+.. .+. +...+...+.+.+.. +.-++|+|.+.. .. ....|...+ ...|..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~l--k~~~~t~ll 166 (237)
T TIGR03877 89 AFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVL--SGLGCTSIF 166 (237)
T ss_pred ccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHH--HhCCCEEEE
Confidence 0000 012 566777777777643 344799999752 11 112233333 255778888
Q ss_pred EcC
Q 040890 196 MLT 198 (221)
Q Consensus 196 TTR 198 (221)
|+.
T Consensus 167 t~~ 169 (237)
T TIGR03877 167 VSQ 169 (237)
T ss_pred EEC
Confidence 864
No 369
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.0017 Score=58.93 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=33.4
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+|+||.-- |.. ...++...+. ..|..||++|++.+.+..++
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiiiitHd~~~~~~~~ 207 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR--AEGRVILYVSHRMEEIFALC 207 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhC
Confidence 34666666788899999765 222 2222223332 23677999999988776654
No 370
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.0027 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 57899999999999999999864
No 371
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.47 E-value=0.0022 Score=59.15 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.-..++|+|..|+|||||++.+..-
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998763
No 372
>PRK06762 hypothetical protein; Provisional
Probab=97.47 E-value=0.00095 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999887
No 373
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.47 E-value=0.0022 Score=52.77 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
..-.+...|..++-+|+||+.-+ ...-..+...+.. ...|..||++|++.+.+..++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 34456666777888999998752 2222223222221 123678999999988777654
No 374
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.46 E-value=0.00067 Score=53.93 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHh
Q 040890 82 SVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~ 102 (221)
+++.|+|+.|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999876
No 375
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.0016 Score=51.41 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 376
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.46 E-value=0.00089 Score=56.19 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=75.0
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~ 133 (221)
-.+++|-+..+..|.+.+.. ........+|++|.|||+-|..+....--.+-|+|++.= |..-... + .++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-v----vr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-V----VRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-c----hhh
Confidence 45789999999999999887 347888899999999999887766532223456666532 1111100 0 000
Q ss_pred hccCCcchhcccC-CHHHHHHHHHHHh--CCce-EEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 134 MMPQSALREIMGK-GFRQRKTALHDYL--KNKR-YLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 134 l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr-~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
.. +...+........ ...+ -.+|||++. ..+.|..|+..+-+....++.++.+.
T Consensus 108 -----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred -----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 00 2222221111111 1223 378999997 46889999888876666676665543
No 377
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.46 E-value=0.0019 Score=50.11 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=78.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCC-------------------CCCC--CeEEEEeC--------------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYV-------------------KSYF--HCHAWVSA-------------------- 119 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F--~~~~wvs~-------------------- 119 (221)
-..++|+|++|+||+||...+..-.+. +..| ....+|.+
T Consensus 36 Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 36 GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 356899999999999998876531111 0011 11122211
Q ss_pred ----cCChHHHHHHHHHHhccCCcc---hhcccCCHHHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCC
Q 040890 120 ----NLDPYVILDNILKIMMPQSAL---REIMGKGFRQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPD 186 (221)
Q Consensus 120 ----~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~ 186 (221)
..+.....+.++.+++..... |...+ .-++..-.+.+.+...+-+|+-|.-- ......++...+.
T Consensus 116 ~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLS-GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln- 193 (228)
T COG4181 116 RGESSADSRAGAKALLEAVGLGKRLTHYPAQLS-GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN- 193 (228)
T ss_pred cCCccccHHHHHHHHHHHhCcccccccCccccC-chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-
Confidence 234555677777777664322 22222 33444456888888999999999542 2344555555554
Q ss_pred CCCCeEEEEEcCChHHHhhcc
Q 040890 187 RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~ 207 (221)
...|+..+..|.+..+|..|.
T Consensus 194 re~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 194 RERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred hhcCceEEEEeCCHHHHHhhh
Confidence 456899999999999999996
No 378
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.46 E-value=0.0018 Score=55.65 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..+.-|||+|.-- +...-..+...+.. ...|..||++|++...+..++
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~ 229 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS 229 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 345666677788899999764 22222233222221 123678999999999988765
No 379
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.0016 Score=53.85 Aligned_cols=62 Identities=8% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+++||+.-+ ...-..+...+..-..+..||++|++.+.+..++ ++++.|
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~---d~i~~l 228 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCS---DYTAFM 228 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC---CEEEEE
Confidence 3446666667888999998752 2222233222221112456888988888776554 344444
No 380
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.45 E-value=0.0015 Score=54.36 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=36.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..++-+|+||..- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~---d~i~~l 223 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS---DQVLVM 223 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc---CEEEEE
Confidence 34666667788899999875 23333333333322 123667888998888877654 345444
No 381
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.0019 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.++..
T Consensus 108 Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 108 NKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 477999999999999999999874
No 382
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0016 Score=58.45 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=62.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
..+.-+.+.|++|+|||+||..+..+ ..|+..--+|.. ++ ++-++.. ....+.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe----~m-------iG~sEsa------Kc~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPE----DM-------IGLSESA------KCAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChH----Hc-------cCccHHH------HHHHHHHHHHHh
Confidence 34566778999999999999988753 456654433111 00 0000000 122223333444
Q ss_pred hCCceEEEEEeCCCChHHH------------HHHhhhc---CCCCCCeEEEEEcCChHHHhhccC
Q 040890 159 LKNKRYLIVLEDVLTNEVR------------KYLGEAL---PDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 159 L~~kr~LlVlDdv~~~~~~------------~~l~~~l---~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
-+..--.||+||+...-+| ..|...| |..+..--|+-||....|.+.|+-
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i 659 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGI 659 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCH
Confidence 4566678999998643333 3333333 333444556778888999998873
No 383
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.45 E-value=0.00093 Score=52.82 Aligned_cols=21 Identities=14% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
||+|.|.+|+||||||+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 384
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.45 E-value=0.00053 Score=58.58 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=51.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-+++-|.|++|+||||||.+++-. ....-..++|| ...++. ..+++++...+.-.-... +.+++.+.+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP-----VYAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 56788999999999999999876642 22223457788 333333 233444332111000111 455566666
Q ss_pred HHHhC-CceEEEEEeCCC
Q 040890 156 HDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L~-~kr~LlVlDdv~ 172 (221)
...++ +.--|||+|.+-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 345699999864
No 385
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.0027 Score=52.73 Aligned_cols=56 Identities=5% Similarity=0.048 Sum_probs=33.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|-.++-+|+||+.- +......+...+..-..+..||++|++.+.+..++
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~ 229 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVS 229 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhC
Confidence 334566666778899999865 33333333333321122457888888887776554
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.44 E-value=0.00013 Score=58.19 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++++|+|+.|+|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 8999999999999999988764
No 387
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.44 E-value=0.0026 Score=52.24 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||.+.+..
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 47899999999999999999875
No 388
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.44 E-value=0.0017 Score=58.81 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT------NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.--+ .....++...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tviivtHd~~~~~~~~---d~v~~l 468 (501)
T PRK10762 403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK--AEGLSIILVSSEMPEVLGMS---DRILVM 468 (501)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhhC---CEEEEE
Confidence 3455666667788999997542 223333333333 23677999999987776654 345554
No 389
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.44 E-value=0.0016 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999999763
No 390
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.44 E-value=0.0024 Score=57.88 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||.+.+...
T Consensus 285 ~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 285 RGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999864
No 391
>PRK13409 putative ATPase RIL; Provisional
Probab=97.43 E-value=0.0016 Score=60.33 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..+.-+++||.-.+ .. ....+...+. . |..||++|++.+.+..++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~--~-g~tvIivsHd~~~l~~~~ 278 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA--E-GKYVLVVEHDLAVLDYLA 278 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--C-CCEEEEEeCCHHHHHHhC
Confidence 3345666667788999997642 22 2223333333 2 677999999988877764
No 392
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.0009 Score=58.67 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=56.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC--eEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH--CHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHD 157 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 157 (221)
....+.|+|..|+|||.|++++.+. .....+ ..+++ +.+....++...+... . .+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~~---------~----~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRDN---------E----MEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHhh---------h----HHHHHH
Confidence 4788999999999999999999883 333332 22333 3334444444444321 1 233444
Q ss_pred HhCCceEEEEEeCCCC-------hHHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 158 YLKNKRYLIVLEDVLT-------NEVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~~-------~~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
.. .-=++++||++- .+.+-.+...+.. .|..||+|++
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsd 216 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSD 216 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcC
Confidence 44 334889999973 2233333344432 3447999984
No 393
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.0026 Score=51.03 Aligned_cols=53 Identities=8% Similarity=-0.013 Sum_probs=39.2
Q ss_pred HHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 153 TALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
--+.+.|.-++=+|.+|.-- +....+++...|. ..-.|+|.|++-+-|.+++.
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD 216 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhH
Confidence 35677788888899999754 3456677776665 34568999999998888864
No 394
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.43 E-value=0.00096 Score=63.27 Aligned_cols=45 Identities=16% Similarity=0.004 Sum_probs=35.1
Q ss_pred ceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++.|.+..++.|.+.+... -...+-+.++|++|+|||+||+.+.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 4678999988888776421 02245678999999999999999988
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0033 Score=55.07 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.++|+++|++|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988765
No 396
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.0028 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999975
No 397
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.42 E-value=0.0024 Score=57.83 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcC--CCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALP--DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~--~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
--.+.+.|..++-+||+|..-+ ...-..+...|. ...-|...|+.|++-.|.+.+| ++|.-|
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~---drv~vm 503 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA---DRVAVM 503 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC---ceEEEE
Confidence 3457788889999999997642 222222222221 1234788999999999999997 444444
No 398
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.42 E-value=0.0021 Score=55.24 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=37.6
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHH---hhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYL---GEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l---~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..+.-||++|..- |...-..+ ...+.. ..|..||++|++..++..++ ++++.|
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~~---Dri~vm 235 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR-EFNTAIIMITHDLGVVAGIC---DKVLVM 235 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEECCHHHHHHhC---CEEEEE
Confidence 34666677788899999864 22222222 223321 23677999999999887664 455554
No 399
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.42 E-value=0.0032 Score=51.29 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~ 206 (221)
-.+...|..++-+++||+-- |......+...+.. ...|..||++|++.+.+..+
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 34566666778899999864 23333333332221 12467799999998887764
No 400
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00039 Score=55.79 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+...+|+|.|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 401
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00062 Score=56.31 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=45.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL 159 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 159 (221)
+..=+.++|.+|+|||.||.++.+... +..+.+ .++ +..+++.++........ ....+...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv-~f~----~~~el~~~Lk~~~~~~~--------~~~~l~~~l---- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISV-LFI----TAPDLLSKLKAAFDEGR--------LEEKLLREL---- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeE-EEE----EHHHHHHHHHHHHhcCc--------hHHHHHHHh----
Confidence 455678999999999999999988533 333332 333 45566666665553210 122222222
Q ss_pred CCceEEEEEeCCC
Q 040890 160 KNKRYLIVLEDVL 172 (221)
Q Consensus 160 ~~kr~LlVlDdv~ 172 (221)
.+--||||||+-
T Consensus 166 -~~~dlLIiDDlG 177 (254)
T COG1484 166 -KKVDLLIIDDIG 177 (254)
T ss_pred -hcCCEEEEeccc
Confidence 234599999986
No 402
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.42 E-value=0.0016 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 403
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.42 E-value=0.002 Score=59.43 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-..++|+|+.|+|||||++.+...
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998763
No 404
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.42 E-value=0.0015 Score=53.27 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNI 130 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~i 130 (221)
+...++.|.|.+|+||||||.++... -.+.. ...++++...+..++++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCCCHHHHHHHH
Confidence 44679999999999999998554432 11222 3346665555666777766
No 405
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.40 E-value=0.0037 Score=50.58 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=64.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCc-------c-----------
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSA-------L----------- 140 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~-------~----------- 140 (221)
+.-.++.|.|.+|+||||||..+... ..+ .-...+|++-..+...+... +++++.... .
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~-~~~-~g~~~~~is~e~~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~~ 94 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK-GLR-DGDPVIYVTTEESRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEKE 94 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH-HHh-cCCeEEEEEccCCHHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccccc
Confidence 45789999999999999999875432 111 22456788444444444433 222222100 0
Q ss_pred -hhcccC-CHHHHHHHHHHHhCC---ceEEEEEeCCCC-----hHHHH----HHhhhcCCCCCCeEEEEEcCC
Q 040890 141 -REIMGK-GFRQRKTALHDYLKN---KRYLIVLEDVLT-----NEVRK----YLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 141 -~~~~~~-~~~~l~~~l~~~L~~---kr~LlVlDdv~~-----~~~~~----~l~~~l~~~~~gs~IivTTR~ 199 (221)
...... +.+++...+.+.++. +.-++|+|.+.. ..... .|...+. ..|..+|+|+..
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~--~~~~tvil~~~~ 165 (229)
T TIGR03881 95 DEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLN--RWNFTILLTSQY 165 (229)
T ss_pred cccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHH--hCCCEEEEEecc
Confidence 000112 566777777776643 345889998752 11111 2222332 458889999864
No 406
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.0028 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999964
No 407
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.40 E-value=0.00064 Score=56.31 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCC----CCCCeEEEE--eCcCChHHHHHHHHHHhccCCcc-hhcc---cC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVK----SYFHCHAWV--SANLDPYVILDNILKIMMPQSAL-REIM---GK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~-~~~~---~~-~ 147 (221)
....+.=|+|.+|+|||+|+..+.-...+. ..=...+|+ ...|+...+ .+|++......+. .+++ .. +
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchhhhceeeeecCC
Confidence 446788999999999999997765322221 122457789 555666555 4567654432110 0000 11 3
Q ss_pred ---HHHHHHHHHHHh-CCceEEEEEeCCC
Q 040890 148 ---FRQRKTALHDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 148 ---~~~l~~~l~~~L-~~kr~LlVlDdv~ 172 (221)
...++..+...+ .++--|||+|.+-
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchH
Confidence 333444444444 3455699999874
No 408
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.40 E-value=0.00014 Score=54.13 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=44.4
Q ss_pred EEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHhC
Q 040890 84 VAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYLK 160 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 160 (221)
|.++|++|+|||+||+.+... . +..++. +...+..+++...--. ..... -.+.. +...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~---~~~~~---l~~a~----- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L----GRPVIRINCSSDTTEEDLIGSYDPS-NGQFE---FKDGP---LVRAM----- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H----TCEEEEEE-TTTSTHHHHHCEEET--TTTTC---EEE-C---CCTTH-----
T ss_pred EEEECCCCCCHHHHHHHHHHH--h----hcceEEEEeccccccccceeeeeec-ccccc---ccccc---ccccc-----
Confidence 568999999999999998872 2 333333 5555655544322211 00000 00000 00011
Q ss_pred CceEEEEEeCCC--ChHHHHHHhhhc
Q 040890 161 NKRYLIVLEDVL--TNEVRKYLGEAL 184 (221)
Q Consensus 161 ~kr~LlVlDdv~--~~~~~~~l~~~l 184 (221)
.+..++|||++. +.+.+..|...+
T Consensus 64 ~~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 64 RKGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp HEEEEEEESSCGG--HHHHHTTHHHH
T ss_pred cceeEEEECCcccCCHHHHHHHHHHH
Confidence 178999999997 455555554443
No 409
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.0011 Score=63.71 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=38.1
Q ss_pred ceeeehhhHHHHHHHHhcC-CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIEG-PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++||+.+++.|...+..- .....++.+.|..|+|||+|++.|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 3689999999999988652 23467999999999999999999987
No 410
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.39 E-value=0.0029 Score=52.96 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.++.-
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3578999999999999999999864
No 411
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0022 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 578999999999999999998863
No 412
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0029 Score=57.50 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=36.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC---Ch---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TN---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.-- |. ....++...+. ..|..||++|++.+.+..++ ++++.|
T Consensus 417 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvi~vsHd~~~~~~~~---d~i~~l 482 (510)
T PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA--DDGKVILMVSSELPEIITVC---DRIAVF 482 (510)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhhC---CEEEEE
Confidence 344566666788899999754 22 23333333332 23677999999987766654 345554
No 413
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0029 Score=59.17 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=65.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC-CC--CC---eEEEEeCc----CChH-HH---------------HHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK-SY--FH---CHAWVSAN----LDPY-VI---------------LDNILKI 133 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~---~~~wvs~~----~~~~-~~---------------~~~il~~ 133 (221)
.-.+++|+|+.|+|||||.+.+....... .. |. ...++++. .+.. .+ ...++..
T Consensus 337 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 416 (638)
T PRK10636 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG 416 (638)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH
Confidence 35789999999999999999998742211 11 11 12244221 1111 11 1223333
Q ss_pred hccCCc----chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 134 MMPQSA----LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 134 l~~~~~----~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
++.... .+...+..+.+ .-.|...|..+.-+|+||.--+ ...-..+...+... .| .||++|++...+..+
T Consensus 417 ~~l~~~~~~~~~~~LSgGekq-Rl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~ 493 (638)
T PRK10636 417 FGFQGDKVTEETRRFSGGEKA-RLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRST 493 (638)
T ss_pred cCCChhHhcCchhhCCHHHHH-HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHh
Confidence 322110 01111112223 3345666667888999997542 22333333333222 35 599999999888776
Q ss_pred c
Q 040890 207 R 207 (221)
Q Consensus 207 ~ 207 (221)
+
T Consensus 494 ~ 494 (638)
T PRK10636 494 T 494 (638)
T ss_pred C
Confidence 5
No 414
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.0032 Score=51.73 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 478999999999999999998764
No 415
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.38 E-value=0.0038 Score=51.06 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=33.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
.-.+...|-.++-+|+||+.-+ . ..+..+...+. ..|..||++|++...+..+
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR--DGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhh
Confidence 3345666667788999998652 2 23333333333 2366799999998887764
No 416
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0006 Score=64.56 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=38.0
Q ss_pred CCceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|-++.++.|.+.+... ......+.++|+.|+|||+||+.+...
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999888631 222456889999999999999998773
No 417
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.38 E-value=0.0015 Score=55.96 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-+++||+-- +...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 108 RvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~---d~i~vl 174 (325)
T TIGR01187 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS---DRIAIM 174 (325)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 344566666778899999865 23322333222221 123667899999888776654 345444
No 418
>PLN03073 ABC transporter F family; Provisional
Probab=97.38 E-value=0.0035 Score=59.33 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 154 ALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.|...|-.++-+|+||.-.+ ...-..|...+... +..||++|++.+....++
T Consensus 354 ~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 354 ALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 45556666788999998763 23333333333321 456999999988877764
No 419
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0036 Score=53.56 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+..-
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999863
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=97.38 E-value=0.0035 Score=59.30 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=70.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC-C--CC---eEEEEeCcC----Ch----------------HHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS-Y--FH---CHAWVSANL----DP----------------YVILDNILKI 133 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~--F~---~~~wvs~~~----~~----------------~~~~~~il~~ 133 (221)
.-.+++|+|+.|+|||||++.+........ . +. ...++++.. +. .+-...++..
T Consensus 534 ~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~ 613 (718)
T PLN03073 534 LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS 613 (718)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 346899999999999999999987422111 0 11 122332211 11 1112233444
Q ss_pred hccCCc----chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 134 MMPQSA----LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 134 l~~~~~----~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
++.... .+...+....+ .-.+...|-.++-+|+||.--+ ...-+.+...+... .| .||++|++...+..+
T Consensus 614 ~gl~~~~~~~~~~~LSgGqkq-RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~ 690 (718)
T PLN03073 614 FGVTGNLALQPMYTLSGGQKS-RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGS 690 (718)
T ss_pred CCCChHHhcCCccccCHHHHH-HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHh
Confidence 333211 11111113333 3345666677889999998652 33333344444322 24 699999999888776
Q ss_pred cCCCCceEec
Q 040890 207 RLDNDLMFTL 216 (221)
Q Consensus 207 ~~~~~~v~~l 216 (221)
+ ++++.|
T Consensus 691 ~---drv~~l 697 (718)
T PLN03073 691 V---DELWVV 697 (718)
T ss_pred C---CEEEEE
Confidence 5 345554
No 421
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.0025 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999875
No 422
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.002 Score=52.91 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=35.4
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..+.-+++||+.- +......+...+..-..+..||++|++.+.+..++ ++++.|
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~---d~i~~l 219 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRIS---DQTAFL 219 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhc---CEEEEE
Confidence 34555666677899999865 33333333333322112466888888888766553 345444
No 423
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.0029 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999998763
No 424
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.37 E-value=0.0011 Score=60.77 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+.+.+...+..++ ++-+++||+.- |...-..+...+....++..+|+.|++......| |+++.|
T Consensus 473 GqrQRiaLARall~-~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~----D~ii~l 540 (571)
T TIGR02203 473 GQRQRLAIARALLK-DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA----DRIVVM 540 (571)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC----CEEEEE
Confidence 55566655555554 66778889764 3344444444444333456677778888777665 355555
No 425
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0028 Score=51.78 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHhCCceEEEEEeCCC---Ch---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TN---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|.-+.-+||||.-- +. ...-.+...+.. ..|+.||+.|++-+.+...+ +++|.|.
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~a---d~v~vl~ 213 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYA---DRVVVLD 213 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhC---CEEEEEE
Confidence 34666677788899999764 22 233333334432 23566777777776666543 4566554
No 426
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.37 E-value=0.0016 Score=51.75 Aligned_cols=107 Identities=7% Similarity=-0.031 Sum_probs=50.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh-
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL- 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L- 159 (221)
-++..|.|++|+||||++..+....... .+ ..+++...-. ....+....+.... ....++......-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~-~v~~~apT~~---Aa~~L~~~~~~~a~-------Ti~~~l~~~~~~~~ 85 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAA-GK-RVIGLAPTNK---AAKELREKTGIEAQ-------TIHSFLYRIPNGDD 85 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHT-T---EEEEESSHH---HHHHHHHHHTS-EE-------EHHHHTTEECCEEC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhC-CC-eEEEECCcHH---HHHHHHHhhCcchh-------hHHHHHhcCCcccc
Confidence 3678889999999999998876532221 11 2223322211 11222222222100 1000000000000
Q ss_pred -----CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 160 -----KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 160 -----~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
..+.-+||+|+.. +...+..|....+. .|+++|+.=-..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 1233488999886 55677777777663 4677887754443
No 427
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.36 E-value=0.0018 Score=50.40 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=29.3
Q ss_pred EEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHH
Q 040890 84 VAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNI 130 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~i 130 (221)
+.|.|++|+|||+||.++.... .+.. ..++|++-..+..++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~-~~~g-~~v~~~s~e~~~~~~~~~~ 46 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG-LARG-EPGLYVTLEESPEELIENA 46 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-HHCC-CcEEEEECCCCHHHHHHHH
Confidence 5789999999999998765421 1222 3466775555566665543
No 428
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.36 E-value=0.002 Score=55.60 Aligned_cols=124 Identities=18% Similarity=0.173 Sum_probs=71.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC----------------------CCCeEEEE-----eCc-------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS----------------------YFHCHAWV-----SAN------------- 120 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------------~F~~~~wv-----s~~------------- 120 (221)
-..+++.|++|+|||||.+.|..=..... -|+..+.+ .++
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~ 110 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKK 110 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCH
Confidence 47889999999999999999975211110 12211111 000
Q ss_pred CChHHHHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCCh-------HHHHHHhhhcCCCCCC
Q 040890 121 LDPYVILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTN-------EVRKYLGEALPDRHNG 190 (221)
Q Consensus 121 ~~~~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~-------~~~~~l~~~l~~~~~g 190 (221)
....+...++++.+..... .|...+ .-++..-.|.+.|..++-+|.||.--+. ..-.+++... ...|
T Consensus 111 ~~i~~rv~e~L~lV~L~~~~~R~p~qLS-GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq--~~~g 187 (352)
T COG3842 111 AEIKARVEEALELVGLEGFADRKPHQLS-GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ--RELG 187 (352)
T ss_pred HHHHHHHHHHHHHcCchhhhhhChhhhC-hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHH--HhcC
Confidence 0122344455554444221 122222 3444556788899999999999975421 1222232222 2348
Q ss_pred eEEEEEcCChHHHhhcc
Q 040890 191 SRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 191 s~IivTTR~~~va~~~~ 207 (221)
...|..|++++=|-.|+
T Consensus 188 iT~i~VTHDqeEAl~ms 204 (352)
T COG3842 188 ITFVYVTHDQEEALAMS 204 (352)
T ss_pred CeEEEEECCHHHHhhhc
Confidence 88999999999888886
No 429
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0022 Score=54.72 Aligned_cols=45 Identities=7% Similarity=-0.045 Sum_probs=36.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|-+...+.|...+..+. -.....++|+.|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999887753 246788999999999998876643
No 430
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.36 E-value=0.0033 Score=57.65 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|+.|+|||||++.+..
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999875
No 431
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.0042 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 30 GTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 432
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.35 E-value=0.0038 Score=54.68 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhcc
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~ 207 (221)
..-.+...|....-+|++|.-- +...-..+...+.. ...|..||++|++.+.+..++
T Consensus 171 QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 171 QRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG 232 (382)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 3445677777888999999865 33333333222221 123677999999988876654
No 433
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.35 E-value=0.0027 Score=51.12 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||.+.+...
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999863
No 434
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.35 E-value=0.00032 Score=57.01 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 78 PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 78 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.....+++|.|++|+|||||++.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999998886
No 435
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.35 E-value=0.0037 Score=58.39 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC---eEEEEeCc---C----ChHHHH----------------HHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH---CHAWVSAN---L----DPYVIL----------------DNI 130 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~---~~~wvs~~---~----~~~~~~----------------~~i 130 (221)
.-.+++|+|+.|+|||||.+.++....... .|. ...|+.+. + ++.+.+ ..+
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 423 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGY 423 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHH
Confidence 346899999999999999999987422111 121 12344221 1 222111 122
Q ss_pred HHHhccCCc-chhccc--CCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 131 LKIMMPQSA-LREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 131 l~~l~~~~~-~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
+..++.... ...... +.-+...-.+...|-.+.-+|+||.-- +....+.|...+... .| .||++|++...+.
T Consensus 424 l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vSHd~~~~~ 501 (635)
T PRK11147 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-QG-TVLLVSHDRQFVD 501 (635)
T ss_pred HHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence 222222110 000111 122222334555666778899999765 233344444444322 24 6999999988777
Q ss_pred hcc
Q 040890 205 FCR 207 (221)
Q Consensus 205 ~~~ 207 (221)
.++
T Consensus 502 ~~~ 504 (635)
T PRK11147 502 NTV 504 (635)
T ss_pred Hhc
Confidence 664
No 436
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.35 E-value=0.0014 Score=60.45 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|..|+|||||++.+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999999876
No 437
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.35 E-value=0.00094 Score=57.00 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHH
Q 040890 77 GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKT 153 (221)
Q Consensus 77 ~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~ 153 (221)
+=+.-+++-|.|++|+||||||.++... ....-..++|| ...++.. .+++++...+...-... ..++..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 3356789999999999999999876553 22223456788 3333321 34444432111101111 4555566
Q ss_pred HHHHHhC-CceEEEEEeCCC
Q 040890 154 ALHDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 154 ~l~~~L~-~kr~LlVlDdv~ 172 (221)
.+...++ +.--+||+|.+-
T Consensus 124 ~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHhhccCCcEEEEcchh
Confidence 6655553 456699999874
No 438
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.35 E-value=0.0027 Score=56.74 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCceEEEEEeCC----CChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 151 RKTALHDYLKNKRYLIVLEDV----LTNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv----~~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
..-.|.+.|=+.++|+|||.- +...+- .+..++.. ...|+.+|+.|+...+...+.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~-AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEA-ALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHH-HHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 344678888899999999954 322211 12222221 345777888888887776653
No 439
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0045 Score=51.25 Aligned_cols=62 Identities=5% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
-.+...|-.++-+++||+.- +......+...+.. ...|..||++|++...+..++ ++++.|+
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~---d~i~~l~ 225 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS---DFTAFFK 225 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc---CEEEEEc
Confidence 34555566677899999864 33334444333332 123677899999888877665 4555554
No 440
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0028 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999976
No 441
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0045 Score=53.14 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=28.2
Q ss_pred CceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 161 NKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 161 ~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
+++-++|+|++. +.+..+.|...+-....++.+|+||.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 334455679997 5678888887776655677777777765
No 442
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.34 E-value=0.005 Score=56.59 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=68.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC---eEEEEeCcC-------ChHHH----------------HHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH---CHAWVSANL-------DPYVI----------------LDNI 130 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~---~~~wvs~~~-------~~~~~----------------~~~i 130 (221)
.-.+++|+|+.|+|||||++.++....... .|. ...++++.. ++.+. ...+
T Consensus 349 ~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 347899999999999999999987421111 111 123442221 12111 1223
Q ss_pred HHHhccCCcc-hhcccC--CHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 131 LKIMMPQSAL-REIMGK--GFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 131 l~~l~~~~~~-~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
+..++..... ...... .-+...-.+...|..+.-+++||.-- +...-+.+...+... .| .||++|++.+.+.
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-PG-CAVVISHDRWFLD 506 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CC-eEEEEECCHHHHH
Confidence 3333332110 001111 22222335566677888899999764 222223333333222 25 4889999988777
Q ss_pred hccCCCCceEecc
Q 040890 205 FCRLDNDLMFTLI 217 (221)
Q Consensus 205 ~~~~~~~~v~~l~ 217 (221)
.++ ++++.|.
T Consensus 507 ~~~---d~i~~l~ 516 (556)
T PRK11819 507 RIA---THILAFE 516 (556)
T ss_pred HhC---CEEEEEE
Confidence 665 3455553
No 443
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.0033 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||++.+...
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999763
No 444
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.33 E-value=0.0012 Score=56.18 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=79.1
Q ss_pred CCCceeeehhhHHHHHHHHhcC---CCCceEEEEEccCCCcHHHHHHHHhcC-cCCCCCCCeEEEE--eCcC-ChHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIEG---PPQLSVVAVIDSYGFDKAVFAAEAYNS-DYVKSYFHCHAWV--SANL-DPYVILD 128 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv--s~~~-~~~~~~~ 128 (221)
+...++|..++..++-.|+... ++ ..-+.|+|+.|+|||+|......+ ++++++| +-| .... .-+-.++
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gE-snsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGE-SNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALK 97 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcC-CCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHH
Confidence 3567999999999999988541 22 344568999999999998877764 2344443 222 1111 2233566
Q ss_pred HHHHHhccCCcchhcccCCHHHHHHHHHHHhCC------ceEEEEEeCCCC------hHHHHHHhh-hcCCCCCCeEEEE
Q 040890 129 NILKIMMPQSALREIMGKGFRQRKTALHDYLKN------KRYLIVLEDVLT------NEVRKYLGE-ALPDRHNGSRVLA 195 (221)
Q Consensus 129 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LlVlDdv~~------~~~~~~l~~-~l~~~~~gs~Iiv 195 (221)
.|.+|+............+..+-...+...|+. -+++.|+|.++- ..-+-.+.+ .=....|-|-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 666666542211100011444445556666632 247888877651 111222211 1122456677888
Q ss_pred EcCCh
Q 040890 196 MLTSN 200 (221)
Q Consensus 196 TTR~~ 200 (221)
|||-.
T Consensus 178 Ttrld 182 (408)
T KOG2228|consen 178 TTRLD 182 (408)
T ss_pred ecccc
Confidence 98843
No 445
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.004 Score=51.50 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|-.++-+++||+-- +......+...+..-..++.||++|++.+.+..++ ++++.|
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~---d~v~~l 225 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVA---DYVAFL 225 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhC---CEEEEE
Confidence 345556666777899999764 33333333333322122477999999988886654 345444
No 446
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.0047 Score=51.66 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 46 ARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999864
No 447
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.33 E-value=0.0025 Score=58.06 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.-..++|+|+.|+|||||++.+..
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999876
No 448
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.33 E-value=0.0051 Score=50.79 Aligned_cols=62 Identities=11% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|-.+.-+++||+-- +...-+.+...+.....+..||++|++.+.+..| ++++.|
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~----dri~~l 227 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDA----DLVLVL 227 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhC----CEEEEE
Confidence 3345666677778899999864 2222223322222222367889999888877653 445554
No 449
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.32 E-value=0.00021 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999863
No 450
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.32 E-value=0.0019 Score=49.88 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988765
No 451
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.004 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999653
No 452
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.32 E-value=0.005 Score=56.40 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.-..++|+|+.|+|||||++.+...
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999763
No 453
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.32 E-value=0.0013 Score=54.83 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=66.2
Q ss_pred eeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCC
Q 040890 61 VMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQS 138 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~ 138 (221)
.|...+..+.+..+... ...++.|.|..|+||||++..+.+. +...-...+.+ +..+.... ..++....
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVNE 132 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeCC
Confidence 34444444434434332 2467899999999999999988762 32211223333 22222110 01111000
Q ss_pred cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHH
Q 040890 139 ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIF 203 (221)
Q Consensus 139 ~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va 203 (221)
+ ......+.++..|+...=.|+++++.+.+....+..+.. .|-.++-|.+-.++.
T Consensus 133 ------~-~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~~ 187 (264)
T cd01129 133 ------K-AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDAP 187 (264)
T ss_pred ------c-CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCHH
Confidence 0 112345667777888888999999998876554444432 233355554544333
No 454
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.31 E-value=0.0035 Score=57.09 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCC-CCCCeEEE---------------------------------------------
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVK-SYFHCHAW--------------------------------------------- 116 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w--------------------------------------------- 116 (221)
+++|+|+.|+|||||++.+.. ... ......++
T Consensus 28 ~~~iiG~nGsGKSTLl~~l~G--l~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 105 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRG--MDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR 105 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhh--cccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHH
Q ss_pred -----E---eCc-CC------------------------hHHHHHHHHHHhccCCcchhcccC--CHHHHHHHHHHHhCC
Q 040890 117 -----V---SAN-LD------------------------PYVILDNILKIMMPQSALREIMGK--GFRQRKTALHDYLKN 161 (221)
Q Consensus 117 -----v---s~~-~~------------------------~~~~~~~il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~ 161 (221)
+ .+. +. ..+-..++++.++........... .-+...-.+...|..
T Consensus 106 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~ 185 (520)
T TIGR03269 106 RIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK 185 (520)
T ss_pred HhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhc
Q ss_pred ceEEEEEeCCC---ChHHHHHHhhhcCCCCC--CeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 162 KRYLIVLEDVL---TNEVRKYLGEALPDRHN--GSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 162 kr~LlVlDdv~---~~~~~~~l~~~l~~~~~--gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
++-+|+||.-. |...-..+...+..-.. |..||++|++.+.+..++ ++++.|.
T Consensus 186 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~---d~i~~l~ 243 (520)
T TIGR03269 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS---DKAIWLE 243 (520)
T ss_pred CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc---CEEEEEe
No 455
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.011 Score=46.11 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCC------CChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDV------LTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv------~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.+.+.++ +.+.|-..+-|+++|.- .-..-+-++...|- ..-|-.++|.|.+-.||+...
T Consensus 155 GMqQRLQ-iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv-~~l~la~viVTHDl~VarLla 219 (258)
T COG4107 155 GMQQRLQ-IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV-RELGLAVVIVTHDLAVARLLA 219 (258)
T ss_pred HHHHHHH-HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHH-HhcCceEEEEechhHHHHHhh
Confidence 4444443 44445567778899953 22233333333333 245778999999999999875
No 456
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.31 E-value=0.004 Score=58.69 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=38.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSD 105 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 105 (221)
..++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999999998887775433334567899999999999999998753
No 457
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.0025 Score=54.09 Aligned_cols=56 Identities=5% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..++-+|+||+.- +......+...+.....+..||++|++.+.+..++
T Consensus 208 rv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~ 266 (305)
T PRK14264 208 RLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266 (305)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc
Confidence 345566666788899999875 23333333333221111346899999888876654
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.30 E-value=0.00021 Score=57.15 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999873
No 459
>PRK09354 recA recombinase A; Provisional
Probab=97.30 E-value=0.0013 Score=56.79 Aligned_cols=97 Identities=19% Similarity=0.106 Sum_probs=55.7
Q ss_pred HHHHHHh-cCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhccc
Q 040890 69 ELLNQLI-EGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMG 145 (221)
Q Consensus 69 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~ 145 (221)
.|=.+|. .+=+.-+++-|+|++|+||||||.++... ....-..++|| ...++. ..+++++.....-.-..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~q 119 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQ 119 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEec
Confidence 3334444 33356789999999999999999876652 22223567888 333443 23444443211100011
Q ss_pred C-CHHHHHHHHHHHhC-CceEEEEEeCCC
Q 040890 146 K-GFRQRKTALHDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 146 ~-~~~~l~~~l~~~L~-~kr~LlVlDdv~ 172 (221)
. ..++..+.+...++ +.--|||+|.|-
T Consensus 120 p~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 120 PDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 1 45555666665554 455699999875
No 460
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0048 Score=52.98 Aligned_cols=44 Identities=14% Similarity=-0.053 Sum_probs=31.5
Q ss_pred ceee-ehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVM-LLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG-~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++| -+.-++.|...+..+. -.....++|+.|+||||+|..+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3556 5556667777665543 356668999999999999987754
No 461
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00097 Score=56.47 Aligned_cols=81 Identities=4% Similarity=0.091 Sum_probs=49.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC--CCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK--SYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHD 157 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 157 (221)
..++|.++|++|.|||+|.+.++++..++ +.|.....+ ..+...++.+....-+. -...+.+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li--EinshsLFSKWFsESgK----------lV~kmF~kI~E 243 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI--EINSHSLFSKWFSESGK----------LVAKMFQKIQE 243 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE--EEehhHHHHHHHhhhhh----------HHHHHHHHHHH
Confidence 35889999999999999999999864443 334333333 11222333333322111 45566677777
Q ss_pred HhCCceE--EEEEeCCC
Q 040890 158 YLKNKRY--LIVLEDVL 172 (221)
Q Consensus 158 ~L~~kr~--LlVlDdv~ 172 (221)
.+.++.. ++.+|.|.
T Consensus 244 Lv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHhCCCcEEEEEeHHHH
Confidence 7766654 55678876
No 462
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.30 E-value=0.0056 Score=56.21 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=69.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC---eEEEEeCcC-------ChHHH----------------HHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH---CHAWVSANL-------DPYVI----------------LDNI 130 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~---~~~wvs~~~-------~~~~~----------------~~~i 130 (221)
.-.+++|+|+.|+|||||++.+........ .|. ...++++.. ++.+. .+.+
T Consensus 347 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 426 (552)
T TIGR03719 347 PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAY 426 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHH
Confidence 357899999999999999999986421111 111 123332211 11111 1234
Q ss_pred HHHhccCCcc-hhccc--CCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 131 LKIMMPQSAL-REIMG--KGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 131 l~~l~~~~~~-~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
+..++..... ..... +.-+...-.+...|..+.-+++||.--+ ...-+.+...+..- .| .||++|++.+.+.
T Consensus 427 l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~viivsHd~~~~~ 504 (552)
T TIGR03719 427 VGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-AG-CAVVISHDRWFLD 504 (552)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-CC-eEEEEeCCHHHHH
Confidence 4444332110 00111 1222333445666777888999997652 23333333333222 24 4899999998777
Q ss_pred hccCCCCceEec
Q 040890 205 FCRLDNDLMFTL 216 (221)
Q Consensus 205 ~~~~~~~~v~~l 216 (221)
.++ ++++.|
T Consensus 505 ~~~---d~i~~l 513 (552)
T TIGR03719 505 RIA---THILAF 513 (552)
T ss_pred HhC---CEEEEE
Confidence 664 345554
No 463
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.29 E-value=0.00051 Score=54.61 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++++.++|+.|+||||.+.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHH
Confidence 47899999999999987766554
No 464
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.29 E-value=0.0057 Score=57.41 Aligned_cols=131 Identities=13% Similarity=0.147 Sum_probs=69.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC-C--C---CeEEEEeCcC-----Ch-------------------HHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS-Y--F---HCHAWVSANL-----DP-------------------YVILDN 129 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~--F---~~~~wvs~~~-----~~-------------------~~~~~~ 129 (221)
.-..++|+|+.|+|||||++.+..-..... . + ....++++.+ ++ .+-..+
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~ 556 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ 556 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHH
Confidence 457899999999999999999887422111 0 1 1223442221 11 112233
Q ss_pred HHHHhccCCcc--h----------hcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEE
Q 040890 130 ILKIMMPQSAL--R----------EIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVL 194 (221)
Q Consensus 130 il~~l~~~~~~--~----------~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~Ii 194 (221)
+++.++..... + ...+..+.+.+ .+.+.|-.++-+++||+.- |...-+.+...+.. .|..+|
T Consensus 557 ~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl-~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI 633 (659)
T TIGR00954 557 ILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRI-AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLF 633 (659)
T ss_pred HHHHcCCHHHHhhcCCcccccccccCCCHHHHHHH-HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEE
Confidence 34433321100 0 01111333333 4556666677899999865 33333444444432 266688
Q ss_pred EEcCChHHHhhccCCCCceEecc
Q 040890 195 AMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 195 vTTR~~~va~~~~~~~~~v~~l~ 217 (221)
++|++.+....| ++++.|.
T Consensus 634 ~isH~~~~~~~~----d~il~l~ 652 (659)
T TIGR00954 634 SVSHRKSLWKYH----EYLLYMD 652 (659)
T ss_pred EEeCchHHHHhC----CEEEEEe
Confidence 888888776554 4566553
No 465
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0041 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||++.+..
T Consensus 31 Ge~~~I~G~nGsGKSTLl~~i~G 53 (251)
T PRK14244 31 REVTAFIGPSGCGKSTFLRCFNR 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 466
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.0038 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999875
No 467
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.28 E-value=0.0021 Score=60.62 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357799999999999999999876
No 468
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.0047 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 469
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.28 E-value=0.0015 Score=55.94 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=38.0
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|....+..+.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998888654333456789999999999999999863
No 470
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.00023 Score=57.69 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=61.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh-
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL- 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L- 159 (221)
..++.|.|+.|.||||+.+.+.... +..+-.+..|- .... -..+.+|+..++...+...+.+ ....-...+...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a-~~~~-~~~~~~i~~~~~~~d~~~~~~S-tF~~e~~~~~~il~ 106 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPA-SSAT-LSIFDSVLTRMGASDSIQHGMS-TFMVELSETSHILS 106 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEc-CceE-EeccceEEEEecCccccccccc-hHHHHHHHHHHHHH
Confidence 4778899999999999998876521 11111111222 0000 0111112222222111111111 2222233333333
Q ss_pred -CCceEEEEEeCCCCh------HH-HHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 160 -KNKRYLIVLEDVLTN------EV-RKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 160 -~~kr~LlVlDdv~~~------~~-~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.+++-|++||..-.. .. ...+...|... .++.+|++|++.+++....
T Consensus 107 ~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~~ 161 (222)
T cd03287 107 NCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEILR 161 (222)
T ss_pred hCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHHH
Confidence 357899999997421 11 12334444432 4788999999999987663
No 471
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00084 Score=52.54 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=48.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh--
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL-- 159 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L-- 159 (221)
-|.|.|++|+||||+|+.+.+...+ .|.+..-|. ........+...+..-+....-. +.+-....+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv------~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-PHLDTGDILRAAIAERTELGEEIKKYIDKGELV------PDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-cEEcHhHHhHhhhccCChHHHHHHHHHHcCCcc------chHHHHHHHHHHHHh
Confidence 3679999999999999999884222 233333333 11111233333333323221111 1122223333333
Q ss_pred -CCceEEEEEeCCC-ChHHHHHHhhhcC
Q 040890 160 -KNKRYLIVLEDVL-TNEVRKYLGEALP 185 (221)
Q Consensus 160 -~~kr~LlVlDdv~-~~~~~~~l~~~l~ 185 (221)
..+. .+|+|+.- ....+..+...|.
T Consensus 75 ~d~~~-~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 75 ADCKA-GFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred hcccC-eEEEeCCCCcHHHHHHHHHHHH
Confidence 2233 88999984 4566666665554
No 472
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.28 E-value=0.0039 Score=56.48 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|-.++-+|+||.--+ . ....++...+. ..|..||++|++.+.+..++ ++++.|.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviiitHd~~~~~~~~---d~i~~l~ 215 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK--AHGVACVYISHKLNEVKAVC---DTICVIR 215 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCcHHHHHHhC---CEEEEEe
Confidence 3345566666788999997642 2 22223333332 34677999999988776654 3555543
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.27 E-value=0.0022 Score=54.58 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=61.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
...+.|+|..|+|||||++.+... +.... ..+.+ ........ .... ++...... . ........+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~-~l~~~~~~-~--~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYV-HLFYSKGG-Q--GLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEE-EEEecCCC-C--CcCccCHHHHHHHH
Confidence 478899999999999999998873 32221 22233 11111110 0000 00000000 0 00223345556677
Q ss_pred hCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 159 LKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 159 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
|+...-.|++|.+.+.+.++-+ .++..+..| ++.|++..+++..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l-~a~~~g~~~--~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFI-RAVNTGHPG--SITTLHAGSPEEA 258 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHH-HHHhcCCCe--EEEEEeCCCHHHH
Confidence 8888889999999987777644 443333333 4778777665543
No 474
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.004 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 475
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.27 E-value=0.00084 Score=57.65 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=29.6
Q ss_pred eehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHH
Q 040890 62 MLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAE 100 (221)
Q Consensus 62 G~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~ 100 (221)
+|..+..--.++|+.++ ...|.+.|.+|+|||.||-+
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALa 264 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALA 264 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHH
Confidence 35666666778888755 89999999999999988843
No 476
>PRK08233 hypothetical protein; Provisional
Probab=97.27 E-value=0.00024 Score=55.14 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=21.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999873
No 477
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.0037 Score=51.24 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=32.8
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-.++-+++||+-- +......+...+..-..+..||++|++.+.+..++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~ 211 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRIS 211 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhC
Confidence 34566666778899999865 23333333333322122457888888888766654
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.26 E-value=0.00017 Score=68.50 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=58.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccC---CHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGK---GFRQRKTALH 156 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~---~~~~l~~~l~ 156 (221)
..++.|+|+.|.|||||.+.+....-. ..+.++| .........+.++...++........... ....+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 478999999999999999887542000 0011111 00000001111111111111000000111 2222232222
Q ss_pred HHhCCceEEEEEeCCCC---hHHHHHH----hhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 157 DYLKNKRYLIVLEDVLT---NEVRKYL----GEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~~---~~~~~~l----~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.+ ..+-|++||..-. ......+ ...+. ..|+.+|+||+..++.....
T Consensus 399 -~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~ 452 (771)
T TIGR01069 399 -KT-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMY 452 (771)
T ss_pred -hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhc
Confidence 22 5789999999863 2233223 33332 35788999999998866543
No 479
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.0037 Score=51.88 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|..|+|||||++.+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 480
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.26 E-value=0.002 Score=55.05 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCC----CCCeEEEE--eCcCChHHHHHHHHHHhccCCcc-
Q 040890 68 KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS----YFHCHAWV--SANLDPYVILDNILKIMMPQSAL- 140 (221)
Q Consensus 68 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~- 140 (221)
..|-++|..+=+...++.|.|.+|+|||||+..++....... .-...+|+ ...++... +.++++.++.....
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~ 161 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDV 161 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHh
Confidence 344444544435679999999999999999988764211111 11356888 44456655 44455554432110
Q ss_pred hhc---ccC-CHHH---HHHHHHHHhC-CceEEEEEeCCC
Q 040890 141 REI---MGK-GFRQ---RKTALHDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 141 ~~~---~~~-~~~~---l~~~l~~~L~-~kr~LlVlDdv~ 172 (221)
..+ ... +.+. ++..+...+. .+--|||+|.+-
T Consensus 162 l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 162 LDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 000 011 2333 3344444443 345699999874
No 481
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.25 E-value=0.0028 Score=56.17 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=70.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccC--------CcchhcccCCHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQ--------SALREIMGKGFRQ 150 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~--------~~~~~~~~~~~~~ 150 (221)
-..++|.|..|+|||||++.+....+ .. ...+.. .+.....+++.+.+..-+.. .+.+.........
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~-~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK--AD-INVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC--CC-eEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 46779999999999999999987432 21 223333 45566667766666542211 0000000001112
Q ss_pred HHHHHHHHh--CCceEEEEEeCCCC-hHHHHHHhhh---cCCCCCCeEEEEEcCChHHHhhccC
Q 040890 151 RKTALHDYL--KNKRYLIVLEDVLT-NEVRKYLGEA---LPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 151 l~~~l~~~L--~~kr~LlVlDdv~~-~~~~~~l~~~---l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
....+.+++ +++..||++||+-. .....++... .|. .|-...+.|....+++.++.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHhcc
Confidence 223344444 58999999999953 2333444333 332 26667777777888877763
No 482
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.25 E-value=0.0027 Score=58.67 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.-..++|+|+.|+|||||++.+..
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcc
Confidence 3457899999999999999999865
No 483
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.25 E-value=0.0063 Score=54.22 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+.+|.++|..|+||||+|..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999988776
No 484
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.24 E-value=0.0053 Score=57.92 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-..++|+|..|+|||||++.+...
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999998763
No 485
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.24 E-value=0.0053 Score=57.48 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..++-+|+||+-- |....+.+...+.. ...|..||++|++.+.+..| ++++.|.
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~----d~i~~l~ 217 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQA----ERVIEIR 217 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhC----CEEEEEE
Confidence 345666677788899999864 33333333333321 12477899999999988753 3555543
No 486
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.24 E-value=0.00038 Score=63.38 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=39.0
Q ss_pred CceeeehhhHHHHHHHHhc----CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE----GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|.++.++.|++.|.. -+...+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3689999999999999832 234568999999999999999999876
No 487
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.00026 Score=57.37 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=59.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
..+++.|+|+.|.|||||.+.+....- -+...++| .... .......++..++.......+.+ ....-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~---la~~g~~vpa~~~-~~~~~~~il~~~~l~d~~~~~lS-~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL---MAQIGCFVPCDSA-DIPIVDCILARVGASDSQLKGVS-TFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---HHHhCCCcCcccE-EEeccceeEeeeccccchhcCcC-hHHHHHHHHHHH
Confidence 467899999999999999887542100 00111122 0000 00111222222222111100111 122222233333
Q ss_pred h--CCceEEEEEeCC---CChHHHH----HHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 159 L--KNKRYLIVLEDV---LTNEVRK----YLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 159 L--~~kr~LlVlDdv---~~~~~~~----~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
+ ...+-|++||.. .+..+-. .+...+.. ..|+.+|+||...++...|.
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhh
Confidence 3 356889999998 3221111 11133322 34788999999988887664
No 488
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.23 E-value=0.0095 Score=54.70 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||.+.+...
T Consensus 30 ~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 30 PGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999874
No 489
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.23 E-value=0.0041 Score=64.77 Aligned_cols=51 Identities=8% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHHHhCCceEEEEEeCCCC-------hHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 153 TALHDYLKNKRYLIVLEDVLT-------NEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~~-------~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
-.+...|-++.-+|+||+--+ ...|+-|... . .|..||+||++.+.+...+
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~---~g~TIIltTHdmdea~~la 1127 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-R---SGRTIIMSTHHMDEADLLG 1127 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-h---CCCEEEEEECCHHHHHHhC
Confidence 345566667788899997652 2445555443 2 3677999999999888765
No 490
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.23 E-value=0.00023 Score=51.70 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=18.6
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 040890 84 VAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~ 103 (221)
|.|.|+.|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999887
No 491
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.23 E-value=0.0025 Score=48.86 Aligned_cols=118 Identities=8% Similarity=0.035 Sum_probs=59.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEE--EE-e-CcCChHHHHHHHHHHhcc---CCc-----chhcccC-CH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHA--WV-S-ANLDPYVILDNILKIMMP---QSA-----LREIMGK-GF 148 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~--wv-s-~~~~~~~~~~~il~~l~~---~~~-----~~~~~~~-~~ 148 (221)
..|-|++..|.||||+|..+.-. .....+...+ |+ + ........+..+ ..+.. ... .....+. ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r-a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR-ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 46778888899999999654431 1222232222 23 3 234444444333 10100 000 0000000 22
Q ss_pred HHHHHHHHHHhCCceE-EEEEeCCCC-----hHHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 149 RQRKTALHDYLKNKRY-LIVLEDVLT-----NEVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
....+..++.+....| |||||++-. .-..+.+...+.....+.-+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2344455555655554 999998742 1233444445544455678999999743
No 492
>PRK04328 hypothetical protein; Provisional
Probab=97.23 E-value=0.0047 Score=50.89 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred HHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcc-----------
Q 040890 72 NQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSAL----------- 140 (221)
Q Consensus 72 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~----------- 140 (221)
++|..+=+.-+++.|.|.+|+|||+||.++... ..+. -...+|++-..+..++.+. ++.++.....
T Consensus 14 ~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee~~~~i~~~-~~~~g~d~~~~~~~~~l~iid 90 (249)
T PRK04328 14 EILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEEHPVQVRRN-MRQFGWDVRKYEEEGKFAIVD 90 (249)
T ss_pred HHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeCCHHHHHHH-HHHcCCCHHHHhhcCCEEEEe
Confidence 334333355789999999999999999765432 2222 2456777443455554443 3333221000
Q ss_pred --h-----------hcc-cC-CHHHHHHHHHHHhCC-ceEEEEEeCCCC-----hH----HHHHHhhhcCCCCCCeEEEE
Q 040890 141 --R-----------EIM-GK-GFRQRKTALHDYLKN-KRYLIVLEDVLT-----NE----VRKYLGEALPDRHNGSRVLA 195 (221)
Q Consensus 141 --~-----------~~~-~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~-----~~----~~~~l~~~l~~~~~gs~Iiv 195 (221)
+ ... +. +...+...+.+.++. +.-++|+|.+-. .. ....|...+. ..|+.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk--~~g~t~ll 168 (249)
T PRK04328 91 AFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLS--GLGCTAIF 168 (249)
T ss_pred ccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHH--hCCCEEEE
Confidence 0 000 12 556666777776643 345799999741 11 1122333332 45778888
Q ss_pred EcC
Q 040890 196 MLT 198 (221)
Q Consensus 196 TTR 198 (221)
|+.
T Consensus 169 t~e 171 (249)
T PRK04328 169 VSQ 171 (249)
T ss_pred EEC
Confidence 864
No 493
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.23 E-value=0.00012 Score=63.42 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=71.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHH-HHHHHHHHhccCCcchhcccCCHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYV-ILDNILKIMMPQSALREIMGKGFRQRKTALH 156 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 156 (221)
..+.+.++|.||+||||++-.+-. +...|....|+ -.+.+-.. +.-.+...++-... +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 368899999999999999987765 55667666655 44444333 33333443544322 2234455677
Q ss_pred HHhCCceEEEEEeCCCCh-HHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 157 DYLKNKRYLIVLEDVLTN-EVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
....++|.++|+||..+. ..-..+...+..+.+.-.|+.|+|+..
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~ 128 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI 128 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh
Confidence 778899999999998432 222333444555556667888888653
No 494
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.22 E-value=0.003 Score=57.56 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.-..++|+|+.|+|||||++.+..-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999763
No 495
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.22 E-value=0.0037 Score=57.04 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|+.|+|||||++.+..-
T Consensus 311 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 311 PGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3578999999999999999999763
No 496
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.22 E-value=0.01 Score=54.03 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|....++.+.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 567999999999999888764444567889999999999999999884
No 497
>PTZ00301 uridine kinase; Provisional
Probab=97.21 E-value=0.00028 Score=56.74 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999987765
No 498
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.21 E-value=0.0018 Score=55.82 Aligned_cols=93 Identities=10% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCC----CCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcc-hhc---ccC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYV----KSYFHCHAWV--SANLDPYVILDNILKIMMPQSAL-REI---MGK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~-~~~---~~~-~ 147 (221)
+..++.-|.|.+|+|||+|+..++-.... ...-...+|| ...|+++++. ++++.++..... ..+ ... +
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCC
Confidence 55788889999999999999776422121 1112467899 5567776654 455655442110 000 111 3
Q ss_pred HHH---HHHHHHHHhC-CceEEEEEeCCC
Q 040890 148 FRQ---RKTALHDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 148 ~~~---l~~~l~~~L~-~kr~LlVlDdv~ 172 (221)
.+. ++..+...+. .+--|||+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 333 3334433443 344589999874
No 499
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0048 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|+|..|+|||||++.+...
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999863
No 500
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.0059 Score=56.90 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..+.-||++|.-- |...-..+...+.. ...|..||++|++.+.+..++ ++++.|
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~---dri~vl 537 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS---HRVAVM 537 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 345666677788899999764 22222222222221 123667999999988887765 345544
Done!