Query 040890
Match_columns 221
No_of_seqs 211 out of 1906
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-27 3.7E-32 216.3 18.3 153 61-220 131-294 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 3.1E-23 1.1E-27 200.8 14.6 155 56-218 122-284 (1249)
3 1vt4_I APAF-1 related killer D 99.9 3.2E-23 1.1E-27 195.3 9.2 148 60-217 130-290 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.7E-21 9.2E-26 175.4 12.4 151 56-217 122-281 (591)
5 1w5s_A Origin recognition comp 99.4 1.8E-12 6.3E-17 111.8 11.3 144 56-203 20-192 (412)
6 2qen_A Walker-type ATPase; unk 99.3 1.7E-11 5.7E-16 103.2 11.6 136 55-202 9-176 (350)
7 2qby_B CDC6 homolog 3, cell di 99.3 9.1E-12 3.1E-16 106.6 9.6 142 57-201 19-175 (384)
8 2qby_A CDC6 homolog 1, cell di 99.3 1.4E-11 4.9E-16 104.9 9.1 159 56-220 18-198 (386)
9 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4E-15 99.6 14.5 143 57-205 16-174 (389)
10 2fna_A Conserved hypothetical 99.2 4.8E-11 1.6E-15 100.6 11.6 135 56-202 11-182 (357)
11 2v1u_A Cell division control p 99.2 7.3E-11 2.5E-15 100.6 10.7 138 57-200 18-177 (387)
12 1njg_A DNA polymerase III subu 99.2 2.7E-10 9.2E-15 90.3 11.2 138 57-201 22-167 (250)
13 2chg_A Replication factor C sm 99.0 2E-09 7E-14 84.2 11.2 122 57-200 16-142 (226)
14 1sxj_B Activator 1 37 kDa subu 98.8 1.1E-08 3.6E-13 85.2 8.2 122 57-200 20-147 (323)
15 1iqp_A RFCS; clamp loader, ext 98.7 3.2E-08 1.1E-12 82.4 6.8 121 57-200 24-150 (327)
16 1jbk_A CLPB protein; beta barr 98.6 1.2E-07 4E-12 72.3 8.8 46 57-104 21-66 (195)
17 3te6_A Regulatory protein SIR3 98.6 2.2E-07 7.4E-12 78.1 10.8 111 59-173 21-143 (318)
18 1jr3_A DNA polymerase III subu 98.6 2.1E-07 7.1E-12 79.0 10.0 138 57-200 15-159 (373)
19 2p65_A Hypothetical protein PF 98.5 2.6E-07 9E-12 70.2 8.2 46 57-104 21-66 (187)
20 3n70_A Transport activator; si 98.5 3E-07 1E-11 68.2 6.7 46 59-104 2-47 (145)
21 3h4m_A Proteasome-activating n 98.5 3.6E-07 1.2E-11 74.9 7.8 48 56-103 15-73 (285)
22 3u61_B DNA polymerase accessor 98.4 1E-06 3.5E-11 73.6 9.9 118 57-200 25-146 (324)
23 3ec2_A DNA replication protein 98.4 6.2E-07 2.1E-11 68.6 7.2 118 64-200 20-143 (180)
24 2chq_A Replication factor C sm 98.4 3.9E-07 1.3E-11 75.4 6.0 120 57-200 16-142 (319)
25 2z4s_A Chromosomal replication 98.3 2.2E-06 7.4E-11 75.1 10.1 122 58-199 105-236 (440)
26 3uk6_A RUVB-like 2; hexameric 98.3 9.9E-06 3.4E-10 68.6 14.0 48 57-104 43-93 (368)
27 1sxj_E Activator 1 40 kDa subu 98.3 5.6E-07 1.9E-11 75.9 5.8 45 57-103 13-58 (354)
28 2w58_A DNAI, primosome compone 98.3 1.1E-06 3.6E-11 68.4 6.5 59 57-117 24-88 (202)
29 3syl_A Protein CBBX; photosynt 98.3 2.3E-06 7.9E-11 70.8 8.4 45 59-103 32-89 (309)
30 3co5_A Putative two-component 98.2 8.6E-07 3E-11 65.5 4.5 47 58-104 4-50 (143)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.2 5.7E-06 2E-10 66.6 9.4 48 57-104 5-62 (262)
32 3eie_A Vacuolar protein sortin 98.2 1.1E-05 3.6E-10 67.6 10.9 49 56-104 16-74 (322)
33 1sxj_D Activator 1 41 kDa subu 98.2 7E-07 2.4E-11 75.1 3.6 133 57-199 36-172 (353)
34 1d2n_A N-ethylmaleimide-sensit 98.2 7.8E-06 2.7E-10 66.6 9.4 48 57-104 32-87 (272)
35 1l8q_A Chromosomal replication 98.2 4.2E-06 1.4E-10 69.9 7.8 113 67-199 23-140 (324)
36 3pfi_A Holliday junction ATP-d 98.2 8.7E-06 3E-10 68.2 9.6 47 57-103 28-77 (338)
37 3pvs_A Replication-associated 98.2 1.1E-05 3.8E-10 70.7 10.6 45 57-103 25-72 (447)
38 1hqc_A RUVB; extended AAA-ATPa 98.2 2.7E-06 9.3E-11 70.8 6.4 48 57-104 11-61 (324)
39 1sxj_A Activator 1 95 kDa subu 98.2 6.8E-06 2.3E-10 73.3 9.1 48 57-104 38-100 (516)
40 3cf0_A Transitional endoplasmi 98.1 2E-05 7E-10 65.3 11.2 49 56-104 13-72 (301)
41 3bos_A Putative DNA replicatio 98.1 5.5E-07 1.9E-11 71.3 1.0 47 56-104 26-75 (242)
42 3vfd_A Spastin; ATPase, microt 98.1 3.6E-05 1.2E-09 66.1 12.4 47 57-103 114-170 (389)
43 2bjv_A PSP operon transcriptio 98.1 5.2E-06 1.8E-10 67.3 6.8 47 58-104 6-52 (265)
44 1vpl_A ABC transporter, ATP-bi 98.1 4E-05 1.4E-09 62.3 11.9 125 80-207 40-213 (256)
45 4g1u_C Hemin import ATP-bindin 98.1 3.3E-05 1.1E-09 63.1 10.9 131 81-216 37-221 (266)
46 1xwi_A SKD1 protein; VPS4B, AA 98.1 4.7E-05 1.6E-09 63.8 12.0 48 57-104 11-68 (322)
47 3tui_C Methionine import ATP-b 98.1 3.1E-05 1E-09 66.1 10.9 133 80-216 53-237 (366)
48 3d8b_A Fidgetin-like protein 1 98.0 2.2E-05 7.6E-10 66.7 9.9 48 57-104 83-140 (357)
49 3gfo_A Cobalt import ATP-bindi 98.0 2.4E-05 8.2E-10 64.3 9.6 62 151-216 150-217 (275)
50 2pcj_A ABC transporter, lipopr 98.0 6.1E-05 2.1E-09 59.9 11.6 60 152-217 148-213 (224)
51 2nq2_C Hypothetical ABC transp 98.0 2.7E-05 9.2E-10 63.2 9.3 131 81-216 31-202 (253)
52 2onk_A Molybdate/tungstate ABC 98.0 2.5E-05 8.5E-10 62.9 8.9 127 79-207 23-194 (240)
53 2cvh_A DNA repair and recombin 98.0 5.5E-05 1.9E-09 59.1 10.5 88 79-172 18-115 (220)
54 4a74_A DNA repair and recombin 98.0 3.5E-05 1.2E-09 60.6 9.3 25 79-103 23-47 (231)
55 3fvq_A Fe(3+) IONS import ATP- 98.0 7.7E-05 2.6E-09 63.5 11.9 130 81-216 30-212 (359)
56 3tif_A Uncharacterized ABC tra 98.0 7.2E-05 2.5E-09 59.9 11.1 62 152-217 153-219 (235)
57 3b9p_A CG5977-PA, isoform A; A 98.0 3.5E-05 1.2E-09 63.3 9.4 48 56-103 19-76 (297)
58 4gp7_A Metallophosphoesterase; 98.0 4E-06 1.4E-10 63.8 3.4 58 150-207 89-166 (171)
59 1ji0_A ABC transporter; ATP bi 98.0 4.5E-05 1.5E-09 61.3 9.8 23 81-103 32-54 (240)
60 2qp9_X Vacuolar protein sortin 98.0 2.2E-05 7.4E-10 66.8 8.2 49 56-104 49-107 (355)
61 1sxj_C Activator 1 40 kDa subu 98.0 2.5E-05 8.4E-10 65.8 8.4 45 57-103 24-68 (340)
62 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.4E-05 8E-10 61.5 7.8 118 80-200 22-168 (235)
63 1a5t_A Delta prime, HOLB; zinc 97.9 0.00012 4.1E-09 61.5 12.5 113 64-200 8-148 (334)
64 1lv7_A FTSH; alpha/beta domain 97.9 4.5E-05 1.5E-09 61.4 9.4 49 56-104 10-68 (257)
65 2kjq_A DNAA-related protein; s 97.9 5E-06 1.7E-10 62.0 3.4 25 80-104 35-59 (149)
66 2olj_A Amino acid ABC transpor 97.9 9.7E-05 3.3E-09 60.2 11.3 60 152-216 167-232 (263)
67 2gno_A DNA polymerase III, gam 97.9 9E-05 3.1E-09 61.7 11.2 132 63-219 2-139 (305)
68 1z47_A CYSA, putative ABC-tran 97.9 6.9E-05 2.4E-09 63.7 10.5 130 81-216 41-219 (355)
69 2pze_A Cystic fibrosis transme 97.9 0.00027 9.3E-09 56.3 13.4 131 81-216 34-202 (229)
70 2zan_A Vacuolar protein sortin 97.9 5.7E-05 1.9E-09 66.1 10.1 48 57-104 133-190 (444)
71 4fcw_A Chaperone protein CLPB; 97.9 6.4E-06 2.2E-10 68.1 3.8 47 58-104 17-70 (311)
72 2pjz_A Hypothetical protein ST 97.9 0.00016 5.4E-09 58.9 11.9 129 81-216 30-199 (263)
73 2yyz_A Sugar ABC transporter, 97.9 7.5E-05 2.6E-09 63.6 10.2 130 81-216 29-207 (359)
74 3rlf_A Maltose/maltodextrin im 97.9 5.8E-05 2E-09 64.7 9.5 132 81-216 29-207 (381)
75 2qi9_C Vitamin B12 import ATP- 97.9 6.6E-05 2.3E-09 60.7 9.4 24 81-104 26-49 (249)
76 2it1_A 362AA long hypothetical 97.9 8.8E-05 3E-09 63.2 10.5 130 81-216 29-207 (362)
77 1ojl_A Transcriptional regulat 97.9 8.9E-05 3E-09 61.6 10.1 47 58-104 2-48 (304)
78 1r6b_X CLPA protein; AAA+, N-t 97.9 9.9E-05 3.4E-09 68.7 11.3 45 57-103 185-229 (758)
79 1b0u_A Histidine permease; ABC 97.8 9.4E-05 3.2E-09 60.2 9.8 24 80-103 31-54 (262)
80 1v43_A Sugar-binding transport 97.8 8.7E-05 3E-09 63.5 10.0 133 80-216 36-215 (372)
81 3d31_A Sulfate/molybdate ABC t 97.8 0.00011 3.8E-09 62.3 10.2 124 81-207 26-195 (348)
82 1sgw_A Putative ABC transporte 97.8 6.1E-05 2.1E-09 59.5 8.0 124 81-207 35-200 (214)
83 1g29_1 MALK, maltose transport 97.8 0.00014 4.8E-09 62.2 10.7 130 81-216 29-213 (372)
84 2cbz_A Multidrug resistance-as 97.8 0.00015 5.2E-09 58.1 10.3 59 154-216 137-201 (237)
85 2ixe_A Antigen peptide transpo 97.8 0.00034 1.2E-08 57.2 12.6 61 152-216 164-229 (271)
86 3hu3_A Transitional endoplasmi 97.8 3.9E-05 1.3E-09 68.0 7.4 46 58-103 204-260 (489)
87 3jvv_A Twitching mobility prot 97.8 3.8E-05 1.3E-09 65.4 7.1 112 81-206 123-237 (356)
88 1oxx_K GLCV, glucose, ABC tran 97.8 0.00013 4.3E-09 62.1 10.2 130 81-216 31-214 (353)
89 2ehv_A Hypothetical protein PH 97.8 3.9E-05 1.3E-09 61.1 6.5 120 80-203 29-185 (251)
90 2ff7_A Alpha-hemolysin translo 97.8 0.00013 4.4E-09 58.9 9.4 23 81-103 35-57 (247)
91 3lw7_A Adenylate kinase relate 97.8 0.00024 8.3E-09 52.9 10.4 92 82-185 2-100 (179)
92 4b4t_L 26S protease subunit RP 97.8 0.00032 1.1E-08 61.2 12.3 46 58-103 181-237 (437)
93 1g6h_A High-affinity branched- 97.7 0.00011 3.9E-09 59.5 8.8 23 81-103 33-55 (257)
94 2yz2_A Putative ABC transporte 97.7 0.0002 6.9E-09 58.3 10.1 132 81-216 33-211 (266)
95 2c9o_A RUVB-like 1; hexameric 97.7 0.00021 7.1E-09 62.7 10.7 49 56-104 35-86 (456)
96 2ce7_A Cell division protein F 97.7 9.2E-05 3.1E-09 65.4 8.4 48 57-104 15-72 (476)
97 1qvr_A CLPB protein; coiled co 97.7 5.6E-05 1.9E-09 71.4 7.4 44 58-103 170-213 (854)
98 2qgz_A Helicase loader, putati 97.7 5.1E-05 1.7E-09 63.3 5.6 39 66-104 136-175 (308)
99 2bbs_A Cystic fibrosis transme 97.7 0.00076 2.6E-08 55.7 12.4 126 80-206 63-225 (290)
100 2ihy_A ABC transporter, ATP-bi 97.6 0.00017 5.9E-09 59.2 8.4 23 81-103 47-69 (279)
101 1n0w_A DNA repair protein RAD5 97.6 0.00022 7.4E-09 56.4 8.4 93 79-172 22-129 (243)
102 1yqt_A RNAse L inhibitor; ATP- 97.6 0.00025 8.4E-09 63.6 9.3 134 81-217 312-476 (538)
103 3bk7_A ABC transporter ATP-bin 97.6 0.0006 2E-08 62.0 11.7 133 81-217 382-546 (607)
104 3hr8_A Protein RECA; alpha and 97.6 0.00046 1.6E-08 58.7 10.1 87 79-172 59-149 (356)
105 2zu0_C Probable ATP-dependent 97.6 0.0012 4.1E-08 53.8 12.3 62 153-216 173-238 (267)
106 1mv5_A LMRA, multidrug resista 97.6 0.00028 9.6E-09 56.7 8.4 24 80-103 27-50 (243)
107 3t15_A Ribulose bisphosphate c 97.5 0.00022 7.6E-09 58.8 7.7 25 80-104 35-59 (293)
108 3j16_B RLI1P; ribosome recycli 97.5 0.0002 6.8E-09 65.1 7.9 132 82-217 379-542 (608)
109 3c8u_A Fructokinase; YP_612366 97.5 7E-05 2.4E-09 58.5 4.3 38 66-103 7-44 (208)
110 3ozx_A RNAse L inhibitor; ATP 97.5 0.0002 6.8E-09 64.2 7.5 132 81-217 294-460 (538)
111 2eyu_A Twitching motility prot 97.5 0.00014 4.7E-09 59.2 5.6 115 80-206 24-139 (261)
112 3gd7_A Fusion complex of cysti 97.5 0.0005 1.7E-08 59.1 9.2 24 80-103 46-69 (390)
113 3pxg_A Negative regulator of g 97.5 0.0001 3.6E-09 64.9 5.0 44 58-103 180-223 (468)
114 1rz3_A Hypothetical protein rb 97.4 0.00015 5.1E-09 56.3 5.3 41 63-103 3-44 (201)
115 3j16_B RLI1P; ribosome recycli 97.4 0.0012 4.2E-08 59.9 12.0 85 126-216 201-294 (608)
116 3cf2_A TER ATPase, transitiona 97.4 0.00068 2.3E-08 63.4 10.0 92 58-172 204-307 (806)
117 2zr9_A Protein RECA, recombina 97.4 0.00043 1.5E-08 58.7 8.0 87 79-172 59-149 (349)
118 3ozx_A RNAse L inhibitor; ATP 97.4 0.00092 3.1E-08 59.9 10.5 53 152-207 146-204 (538)
119 3nh6_A ATP-binding cassette SU 97.4 0.00033 1.1E-08 58.3 7.1 24 80-103 79-102 (306)
120 4b4t_J 26S protease regulatory 97.4 0.00053 1.8E-08 59.1 8.2 46 58-103 148-204 (405)
121 4b4t_I 26S protease regulatory 97.4 0.0012 4.3E-08 57.2 10.6 46 58-103 182-238 (437)
122 1nlf_A Regulatory protein REPA 97.4 0.0007 2.4E-08 55.2 8.6 24 80-103 29-52 (279)
123 4b4t_K 26S protease regulatory 97.4 0.00076 2.6E-08 58.7 9.2 46 58-103 172-228 (428)
124 1xp8_A RECA protein, recombina 97.4 0.0012 4.2E-08 56.2 10.3 87 79-172 72-162 (366)
125 2iw3_A Elongation factor 3A; a 97.3 0.00087 3E-08 63.9 10.0 122 81-207 461-612 (986)
126 1ypw_A Transitional endoplasmi 97.3 0.00026 8.8E-09 66.5 6.5 46 58-103 204-260 (806)
127 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00063 2.2E-08 60.9 8.7 132 80-216 46-231 (538)
128 1cr0_A DNA primase/helicase; R 97.3 0.00061 2.1E-08 56.0 8.0 119 80-200 34-197 (296)
129 2ewv_A Twitching motility prot 97.3 0.00021 7E-09 61.2 5.2 112 80-205 135-249 (372)
130 4b4t_M 26S protease regulatory 97.3 0.0006 2.1E-08 59.4 8.1 46 58-103 181-237 (434)
131 3pxi_A Negative regulator of g 97.3 0.00048 1.6E-08 64.1 7.9 47 58-104 491-544 (758)
132 1in4_A RUVB, holliday junction 97.3 0.00014 4.6E-09 61.2 3.8 47 57-103 24-73 (334)
133 2b8t_A Thymidine kinase; deoxy 97.3 0.0001 3.5E-09 58.7 2.7 109 81-198 12-124 (223)
134 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00016 5.6E-09 60.6 3.9 68 81-172 123-192 (331)
135 2z43_A DNA repair and recombin 97.3 0.0009 3.1E-08 55.9 8.5 93 79-172 105-213 (324)
136 3b5x_A Lipid A export ATP-bind 97.3 0.0028 9.4E-08 57.2 12.1 24 80-103 368-391 (582)
137 1u94_A RECA protein, recombina 97.3 0.00092 3.1E-08 56.8 8.3 87 79-172 61-151 (356)
138 1odf_A YGR205W, hypothetical 3 97.3 0.00032 1.1E-08 57.9 5.3 26 78-103 28-53 (290)
139 1ofh_A ATP-dependent HSL prote 97.2 0.00015 5E-09 59.6 3.2 48 57-104 14-73 (310)
140 4b4t_H 26S protease regulatory 97.2 0.00043 1.5E-08 60.6 6.1 46 58-103 209-265 (467)
141 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00076 2.6E-08 56.7 7.5 109 81-206 171-281 (330)
142 3bk7_A ABC transporter ATP-bin 97.2 0.00077 2.6E-08 61.3 7.9 132 80-216 116-301 (607)
143 3m6a_A ATP-dependent protease 97.2 0.00092 3.1E-08 59.9 8.1 45 59-103 82-130 (543)
144 1qvr_A CLPB protein; coiled co 97.2 0.00069 2.4E-08 63.9 7.6 45 59-103 559-610 (854)
145 2iw3_A Elongation factor 3A; a 97.2 0.0022 7.6E-08 61.1 11.0 60 152-216 909-971 (986)
146 1zp6_A Hypothetical protein AT 97.2 0.00024 8.4E-09 54.2 3.7 24 81-104 9-32 (191)
147 3t61_A Gluconokinase; PSI-biol 97.2 0.0013 4.4E-08 50.8 7.7 23 81-103 18-40 (202)
148 3pxi_A Negative regulator of g 97.2 0.00034 1.2E-08 65.1 5.0 45 57-103 179-223 (758)
149 2px0_A Flagellar biosynthesis 97.1 0.0063 2.2E-07 50.2 12.1 24 80-103 104-127 (296)
150 2i1q_A DNA repair and recombin 97.1 0.0014 4.7E-08 54.6 8.1 93 79-172 96-214 (322)
151 1qhx_A CPT, protein (chloramph 97.1 0.00022 7.7E-09 53.8 2.7 22 82-103 4-25 (178)
152 1pzn_A RAD51, DNA repair and r 97.1 0.0019 6.5E-08 54.6 8.7 94 79-173 129-242 (349)
153 2r62_A Cell division protease 97.1 0.00025 8.7E-09 57.2 3.1 48 57-104 10-67 (268)
154 3lda_A DNA repair protein RAD5 97.1 0.0019 6.4E-08 55.7 8.7 93 79-172 176-283 (400)
155 3kb2_A SPBC2 prophage-derived 97.1 0.00026 8.9E-09 52.9 2.8 22 82-103 2-23 (173)
156 1v5w_A DMC1, meiotic recombina 97.1 0.0044 1.5E-07 52.2 10.5 93 79-172 120-229 (343)
157 3io5_A Recombination and repai 97.1 0.0025 8.7E-08 53.2 8.8 85 83-172 30-121 (333)
158 1kgd_A CASK, peripheral plasma 97.1 0.00028 9.7E-09 53.7 2.9 23 81-103 5-27 (180)
159 3hws_A ATP-dependent CLP prote 97.0 0.0005 1.7E-08 58.2 4.5 46 59-104 16-74 (363)
160 3uie_A Adenylyl-sulfate kinase 97.0 0.00036 1.2E-08 54.0 3.4 24 80-103 24-47 (200)
161 1ly1_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 52.5 3.1 22 82-103 3-24 (181)
162 3e70_C DPA, signal recognition 97.0 0.0014 4.9E-08 55.0 7.2 24 80-103 128-151 (328)
163 2r44_A Uncharacterized protein 97.0 0.00056 1.9E-08 57.0 4.6 43 57-103 26-68 (331)
164 1ixz_A ATP-dependent metallopr 97.0 0.00057 2E-08 54.7 4.5 48 56-104 14-72 (254)
165 1g5t_A COB(I)alamin adenosyltr 97.0 0.00088 3E-08 52.1 5.3 52 149-200 106-163 (196)
166 3qf4_A ABC transporter, ATP-bi 97.0 0.0032 1.1E-07 56.9 9.8 24 80-103 368-391 (587)
167 3tr0_A Guanylate kinase, GMP k 97.0 0.00037 1.3E-08 53.7 3.2 23 81-103 7-29 (205)
168 3vaa_A Shikimate kinase, SK; s 97.0 0.00035 1.2E-08 54.0 3.0 23 81-103 25-47 (199)
169 1kag_A SKI, shikimate kinase I 97.0 0.00027 9.3E-09 53.0 2.3 22 82-103 5-26 (173)
170 2yl4_A ATP-binding cassette SU 97.0 0.0035 1.2E-07 56.7 9.9 24 80-103 369-392 (595)
171 3bh0_A DNAB-like replicative h 97.0 0.004 1.4E-07 51.8 9.6 53 79-133 66-118 (315)
172 3asz_A Uridine kinase; cytidin 97.0 0.00041 1.4E-08 53.9 3.3 24 80-103 5-28 (211)
173 1tf7_A KAIC; homohexamer, hexa 97.0 0.0017 5.7E-08 57.9 7.6 115 79-200 279-417 (525)
174 1knq_A Gluconate kinase; ALFA/ 97.0 0.00056 1.9E-08 51.5 3.8 23 81-103 8-30 (175)
175 3b60_A Lipid A export ATP-bind 97.0 0.0024 8.3E-08 57.6 8.5 24 80-103 368-391 (582)
176 3sr0_A Adenylate kinase; phosp 96.9 0.0064 2.2E-07 47.5 9.8 123 83-217 2-137 (206)
177 4eun_A Thermoresistant glucoki 96.9 0.00043 1.5E-08 53.5 3.0 24 80-103 28-51 (200)
178 1vma_A Cell division protein F 96.9 0.001 3.5E-08 55.4 5.3 24 80-103 103-126 (306)
179 1uj2_A Uridine-cytidine kinase 96.9 0.00049 1.7E-08 55.3 3.3 25 79-103 20-44 (252)
180 2j41_A Guanylate kinase; GMP, 96.9 0.00051 1.7E-08 52.9 3.2 24 81-104 6-29 (207)
181 2x8a_A Nuclear valosin-contain 96.9 0.00092 3.2E-08 54.6 4.8 47 57-104 9-67 (274)
182 3tau_A Guanylate kinase, GMP k 96.9 0.00052 1.8E-08 53.5 3.2 25 80-104 7-31 (208)
183 2rhm_A Putative kinase; P-loop 96.9 0.00059 2E-08 52.0 3.4 23 81-103 5-27 (193)
184 2bdt_A BH3686; alpha-beta prot 96.9 0.00055 1.9E-08 52.2 3.1 22 82-103 3-24 (189)
185 3a00_A Guanylate kinase, GMP k 96.9 0.00043 1.5E-08 52.9 2.4 22 82-103 2-23 (186)
186 2qt1_A Nicotinamide riboside k 96.9 0.0007 2.4E-08 52.5 3.6 25 79-103 19-43 (207)
187 1nks_A Adenylate kinase; therm 96.9 0.00058 2E-08 51.9 3.1 22 82-103 2-23 (194)
188 4a82_A Cystic fibrosis transme 96.9 0.0051 1.7E-07 55.5 9.8 24 80-103 366-389 (578)
189 3qf4_B Uncharacterized ABC tra 96.8 0.0018 6.2E-08 58.7 6.7 24 80-103 380-403 (598)
190 1uf9_A TT1252 protein; P-loop, 96.8 0.00068 2.3E-08 52.1 3.4 25 79-103 6-30 (203)
191 3trf_A Shikimate kinase, SK; a 96.8 0.00056 1.9E-08 51.9 2.9 23 81-103 5-27 (185)
192 1iy2_A ATP-dependent metallopr 96.8 0.00084 2.9E-08 54.6 4.0 49 55-104 37-96 (278)
193 1tf7_A KAIC; homohexamer, hexa 96.8 0.0007 2.4E-08 60.4 3.8 117 80-202 38-187 (525)
194 1gvn_B Zeta; postsegregational 96.8 0.0012 4.2E-08 54.2 5.0 24 80-103 32-55 (287)
195 3kl4_A SRP54, signal recogniti 96.8 0.0024 8.2E-08 55.6 7.0 24 80-103 96-119 (433)
196 1ye8_A Protein THEP1, hypothet 96.8 0.0006 2.1E-08 52.1 2.9 58 159-218 96-162 (178)
197 1kht_A Adenylate kinase; phosp 96.8 0.00063 2.2E-08 51.6 2.9 22 82-103 4-25 (192)
198 1cke_A CK, MSSA, protein (cyti 96.8 0.00065 2.2E-08 53.2 2.9 22 82-103 6-27 (227)
199 3tlx_A Adenylate kinase 2; str 96.8 0.0011 3.8E-08 53.0 4.3 38 66-103 14-51 (243)
200 1lvg_A Guanylate kinase, GMP k 96.8 0.00053 1.8E-08 53.2 2.3 23 81-103 4-26 (198)
201 2jeo_A Uridine-cytidine kinase 96.8 0.00082 2.8E-08 53.7 3.4 24 80-103 24-47 (245)
202 2qor_A Guanylate kinase; phosp 96.8 0.00058 2E-08 53.0 2.4 23 81-103 12-34 (204)
203 2if2_A Dephospho-COA kinase; a 96.8 0.00071 2.4E-08 52.2 2.9 22 82-103 2-23 (204)
204 1jjv_A Dephospho-COA kinase; P 96.7 0.00087 3E-08 51.9 3.4 22 82-103 3-24 (206)
205 3aez_A Pantothenate kinase; tr 96.7 0.00088 3E-08 55.8 3.6 25 79-103 88-112 (312)
206 1zuh_A Shikimate kinase; alpha 96.7 0.00076 2.6E-08 50.4 2.9 24 80-103 6-29 (168)
207 1tev_A UMP-CMP kinase; ploop, 96.7 0.00083 2.8E-08 51.1 3.1 23 81-103 3-25 (196)
208 3tqc_A Pantothenate kinase; bi 96.7 0.0015 5.2E-08 54.7 5.0 39 65-103 74-114 (321)
209 1znw_A Guanylate kinase, GMP k 96.7 0.00083 2.8E-08 52.2 3.2 23 81-103 20-42 (207)
210 2jaq_A Deoxyguanosine kinase; 96.7 0.00077 2.6E-08 51.7 2.9 21 83-103 2-22 (205)
211 3dm5_A SRP54, signal recogniti 96.7 0.0041 1.4E-07 54.3 7.7 24 80-103 99-122 (443)
212 2ze6_A Isopentenyl transferase 96.7 0.00082 2.8E-08 54.2 3.1 22 82-103 2-23 (253)
213 2bbw_A Adenylate kinase 4, AK4 96.7 0.00084 2.9E-08 53.6 3.2 23 81-103 27-49 (246)
214 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.0015 5E-08 58.0 5.0 43 58-104 22-64 (500)
215 1ukz_A Uridylate kinase; trans 96.7 0.00098 3.3E-08 51.4 3.4 24 80-103 14-37 (203)
216 3iij_A Coilin-interacting nucl 96.7 0.00068 2.3E-08 51.3 2.4 23 81-103 11-33 (180)
217 1y63_A LMAJ004144AAA protein; 96.7 0.00092 3.2E-08 51.0 3.2 24 80-103 9-32 (184)
218 2c95_A Adenylate kinase 1; tra 96.7 0.0009 3.1E-08 51.1 3.1 23 81-103 9-31 (196)
219 1ex7_A Guanylate kinase; subst 96.7 0.00055 1.9E-08 52.8 1.8 22 82-103 2-23 (186)
220 3thx_A DNA mismatch repair pro 96.7 0.002 6.8E-08 61.3 5.9 47 160-207 739-792 (934)
221 2p5t_B PEZT; postsegregational 96.7 0.0013 4.5E-08 52.8 4.1 25 79-103 30-54 (253)
222 2hf9_A Probable hydrogenase ni 96.7 0.002 7E-08 50.2 5.0 36 67-104 26-61 (226)
223 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 50.3 3.3 23 81-103 4-26 (186)
224 1z6g_A Guanylate kinase; struc 96.7 0.00076 2.6E-08 53.1 2.4 23 81-103 23-45 (218)
225 2yvu_A Probable adenylyl-sulfa 96.6 0.0012 4E-08 50.3 3.4 24 80-103 12-35 (186)
226 1um8_A ATP-dependent CLP prote 96.6 0.0017 5.7E-08 55.2 4.6 23 81-103 72-94 (376)
227 1g8p_A Magnesium-chelatase 38 96.6 0.001 3.5E-08 55.5 3.2 46 57-104 23-68 (350)
228 2r6a_A DNAB helicase, replicat 96.6 0.0082 2.8E-07 52.5 9.1 53 79-132 201-253 (454)
229 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0011 3.7E-08 53.6 3.3 23 81-103 4-26 (260)
230 2plr_A DTMP kinase, probable t 96.6 0.0012 4E-08 51.0 3.3 24 81-104 4-27 (213)
231 1sq5_A Pantothenate kinase; P- 96.6 0.0025 8.7E-08 52.8 5.5 25 79-103 78-102 (308)
232 1htw_A HI0065; nucleotide-bind 96.6 0.0013 4.5E-08 49.3 3.4 24 80-103 32-55 (158)
233 2bwj_A Adenylate kinase 5; pho 96.6 0.001 3.6E-08 50.8 2.9 23 81-103 12-34 (199)
234 3ux8_A Excinuclease ABC, A sub 96.6 0.007 2.4E-07 55.5 8.8 63 147-216 206-276 (670)
235 1s96_A Guanylate kinase, GMP k 96.6 0.0011 3.7E-08 52.4 3.0 114 80-204 15-144 (219)
236 1via_A Shikimate kinase; struc 96.6 0.001 3.5E-08 50.1 2.7 22 82-103 5-26 (175)
237 2vli_A Antibiotic resistance p 96.6 0.00076 2.6E-08 50.9 2.0 23 81-103 5-27 (183)
238 1qf9_A UMP/CMP kinase, protein 96.6 0.0012 4.1E-08 50.1 3.1 23 81-103 6-28 (194)
239 2iyv_A Shikimate kinase, SK; t 96.6 0.0008 2.7E-08 51.0 2.1 22 82-103 3-24 (184)
240 3ney_A 55 kDa erythrocyte memb 96.6 0.0012 4.1E-08 51.4 3.0 24 80-103 18-41 (197)
241 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.4E-08 52.9 3.3 23 81-103 27-49 (252)
242 1j8m_F SRP54, signal recogniti 96.6 0.0087 3E-07 49.4 8.4 23 81-103 98-120 (297)
243 2wsm_A Hydrogenase expression/ 96.6 0.002 6.9E-08 50.1 4.3 39 64-104 15-53 (221)
244 1e6c_A Shikimate kinase; phosp 96.5 0.00096 3.3E-08 49.9 2.3 22 82-103 3-24 (173)
245 2pez_A Bifunctional 3'-phospho 96.5 0.0015 5E-08 49.4 3.3 23 81-103 5-27 (179)
246 2pbr_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 50.0 2.9 21 83-103 2-22 (195)
247 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0018 6.3E-08 54.9 4.1 43 61-103 2-46 (359)
248 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.7E-08 50.8 3.2 23 81-103 9-31 (215)
249 1fx0_B ATP synthase beta chain 96.5 0.0068 2.3E-07 53.5 7.7 101 70-172 155-276 (498)
250 4f4c_A Multidrug resistance pr 96.5 0.014 4.8E-07 57.6 10.8 23 81-103 1105-1127(1321)
251 3bgw_A DNAB-like replicative h 96.5 0.0098 3.3E-07 51.9 8.8 53 79-133 195-247 (444)
252 2cdn_A Adenylate kinase; phosp 96.5 0.0015 5E-08 50.4 3.2 24 80-103 19-42 (201)
253 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.7E-08 48.8 2.9 21 83-103 2-22 (168)
254 2grj_A Dephospho-COA kinase; T 96.5 0.0016 5.4E-08 50.4 3.3 25 79-103 10-34 (192)
255 1xjc_A MOBB protein homolog; s 96.5 0.0014 4.7E-08 49.8 2.9 24 80-103 3-26 (169)
256 3p32_A Probable GTPase RV1496/ 96.5 0.0031 1.1E-07 53.3 5.4 37 67-103 65-101 (355)
257 3fwy_A Light-independent proto 96.5 0.0015 5E-08 54.6 3.3 24 79-102 46-69 (314)
258 2wwf_A Thymidilate kinase, put 96.5 0.0014 4.8E-08 50.7 3.0 23 81-103 10-32 (212)
259 1rj9_A FTSY, signal recognitio 96.5 0.0017 5.8E-08 53.9 3.6 24 80-103 101-124 (304)
260 1gtv_A TMK, thymidylate kinase 96.5 0.00073 2.5E-08 52.4 1.2 21 83-103 2-22 (214)
261 3thx_B DNA mismatch repair pro 96.5 0.0038 1.3E-07 59.3 6.3 47 160-207 750-803 (918)
262 3lnc_A Guanylate kinase, GMP k 96.5 0.00099 3.4E-08 52.6 1.9 23 81-103 27-50 (231)
263 1q57_A DNA primase/helicase; d 96.4 0.021 7.2E-07 50.4 10.7 54 79-133 240-293 (503)
264 2z0h_A DTMP kinase, thymidylat 96.4 0.0015 5.2E-08 49.8 2.9 21 83-103 2-22 (197)
265 2f6r_A COA synthase, bifunctio 96.4 0.0018 6E-08 53.1 3.4 24 80-103 74-97 (281)
266 2q6t_A DNAB replication FORK h 96.4 0.02 6.8E-07 49.8 10.3 64 68-133 188-251 (444)
267 2ck3_D ATP synthase subunit be 96.4 0.0062 2.1E-07 53.5 7.0 62 70-133 143-207 (482)
268 1vht_A Dephospho-COA kinase; s 96.4 0.002 6.7E-08 50.3 3.5 23 81-103 4-26 (218)
269 3ux8_A Excinuclease ABC, A sub 96.4 0.017 5.9E-07 52.9 10.2 64 147-216 547-618 (670)
270 3zvl_A Bifunctional polynucleo 96.4 0.0096 3.3E-07 51.5 8.1 24 80-103 257-280 (416)
271 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.6E-08 51.2 2.9 23 81-103 7-29 (227)
272 1m7g_A Adenylylsulfate kinase; 96.4 0.0021 7E-08 50.1 3.4 23 81-103 25-47 (211)
273 2xxa_A Signal recognition part 96.4 0.014 4.9E-07 50.7 9.1 38 66-103 78-122 (433)
274 1aky_A Adenylate kinase; ATP:A 96.4 0.0018 6.1E-08 50.7 3.0 23 81-103 4-26 (220)
275 3umf_A Adenylate kinase; rossm 96.4 0.0022 7.5E-08 50.7 3.5 25 79-103 27-51 (217)
276 2v54_A DTMP kinase, thymidylat 96.4 0.0019 6.4E-08 49.6 3.0 23 81-103 4-26 (204)
277 3ice_A Transcription terminati 96.4 0.00064 2.2E-08 58.4 0.3 23 81-103 174-196 (422)
278 2f1r_A Molybdopterin-guanine d 96.4 0.001 3.5E-08 50.5 1.4 22 82-103 3-24 (171)
279 3fb4_A Adenylate kinase; psych 96.3 0.0019 6.4E-08 50.3 2.9 21 83-103 2-22 (216)
280 3b9q_A Chloroplast SRP recepto 96.3 0.0023 7.8E-08 53.1 3.6 24 80-103 99-122 (302)
281 2i3b_A HCR-ntpase, human cance 96.3 0.0015 5.1E-08 50.4 2.3 23 82-104 2-24 (189)
282 1zu4_A FTSY; GTPase, signal re 96.3 0.0045 1.6E-07 51.7 5.4 24 80-103 104-127 (320)
283 3b85_A Phosphate starvation-in 96.3 0.0016 5.5E-08 51.0 2.5 23 81-103 22-44 (208)
284 2yhs_A FTSY, cell division pro 96.3 0.0039 1.3E-07 55.2 5.0 24 80-103 292-315 (503)
285 1zak_A Adenylate kinase; ATP:A 96.3 0.0017 6E-08 50.8 2.6 23 81-103 5-27 (222)
286 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0021 7.2E-08 51.7 3.1 23 81-103 29-51 (250)
287 2o8b_B DNA mismatch repair pro 96.3 0.00029 1E-08 67.6 -2.4 49 158-207 864-919 (1022)
288 3hjn_A DTMP kinase, thymidylat 96.3 0.0051 1.7E-07 47.6 5.1 87 83-172 2-91 (197)
289 2ffh_A Protein (FFH); SRP54, s 96.3 0.011 3.7E-07 51.4 7.6 24 80-103 97-120 (425)
290 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0049 1.7E-07 54.1 5.5 50 82-132 152-204 (473)
291 4f4c_A Multidrug resistance pr 96.3 0.016 5.4E-07 57.2 9.6 25 80-104 443-467 (1321)
292 3dl0_A Adenylate kinase; phosp 96.3 0.0022 7.5E-08 49.9 2.9 21 83-103 2-22 (216)
293 3ake_A Cytidylate kinase; CMP 96.3 0.0022 7.5E-08 49.3 2.9 21 83-103 4-24 (208)
294 2ghi_A Transport protein; mult 96.2 0.0026 8.8E-08 51.6 3.3 24 81-104 46-69 (260)
295 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0031 1E-07 56.0 4.0 49 56-104 29-87 (499)
296 1svm_A Large T antigen; AAA+ f 96.2 0.0044 1.5E-07 53.0 4.6 25 79-103 167-191 (377)
297 4a1f_A DNAB helicase, replicat 96.2 0.019 6.5E-07 48.3 8.5 54 79-134 44-97 (338)
298 1np6_A Molybdopterin-guanine d 96.2 0.0026 8.8E-08 48.4 2.9 23 81-103 6-28 (174)
299 1g41_A Heat shock protein HSLU 96.2 0.003 1E-07 55.2 3.6 46 58-103 15-72 (444)
300 1tue_A Replication protein E1; 96.2 0.0039 1.3E-07 48.9 3.9 38 65-103 43-80 (212)
301 3nwj_A ATSK2; P loop, shikimat 96.2 0.0021 7.2E-08 51.9 2.3 23 81-103 48-70 (250)
302 3k1j_A LON protease, ATP-depen 96.1 0.0068 2.3E-07 54.9 5.8 44 57-104 40-83 (604)
303 2og2_A Putative signal recogni 96.1 0.0034 1.2E-07 53.3 3.6 24 80-103 156-179 (359)
304 2vp4_A Deoxynucleoside kinase; 96.1 0.0028 9.6E-08 50.1 2.8 25 79-103 18-42 (230)
305 1a7j_A Phosphoribulokinase; tr 96.1 0.0017 5.7E-08 53.6 1.3 24 80-103 4-27 (290)
306 2v9p_A Replication protein E1; 96.1 0.0032 1.1E-07 52.3 3.0 25 79-103 124-148 (305)
307 2dr3_A UPF0273 protein PH0284; 96.0 0.0056 1.9E-07 48.2 4.4 117 80-201 22-174 (247)
308 1ltq_A Polynucleotide kinase; 96.0 0.0034 1.2E-07 51.4 3.1 22 82-103 3-24 (301)
309 3r20_A Cytidylate kinase; stru 96.0 0.0033 1.1E-07 50.2 3.0 23 81-103 9-31 (233)
310 3be4_A Adenylate kinase; malar 96.0 0.003 1E-07 49.3 2.6 23 81-103 5-27 (217)
311 1e4v_A Adenylate kinase; trans 96.0 0.0036 1.2E-07 48.8 2.9 21 83-103 2-22 (214)
312 2xb4_A Adenylate kinase; ATP-b 96.0 0.0036 1.2E-07 49.2 2.9 21 83-103 2-22 (223)
313 3d3q_A TRNA delta(2)-isopenten 96.0 0.0037 1.3E-07 52.7 3.1 22 82-103 8-29 (340)
314 3cmu_A Protein RECA, recombina 96.0 0.034 1.2E-06 56.7 10.4 87 79-172 1425-1515(2050)
315 3e1s_A Exodeoxyribonuclease V, 96.0 0.033 1.1E-06 50.2 9.5 36 64-103 191-226 (574)
316 3g5u_A MCG1178, multidrug resi 96.0 0.014 4.9E-07 57.4 7.6 24 80-103 415-438 (1284)
317 3sop_A Neuronal-specific septi 95.9 0.0037 1.3E-07 51.0 2.9 21 83-103 4-24 (270)
318 2vf7_A UVRA2, excinuclease ABC 95.9 0.022 7.4E-07 53.6 8.4 57 154-216 740-805 (842)
319 3g5u_A MCG1178, multidrug resi 95.9 0.0081 2.8E-07 59.1 5.7 24 80-103 1058-1081(1284)
320 1oix_A RAS-related protein RAB 95.9 0.0041 1.4E-07 47.4 2.9 24 81-104 29-52 (191)
321 1ak2_A Adenylate kinase isoenz 95.9 0.0044 1.5E-07 49.0 3.2 23 81-103 16-38 (233)
322 2zej_A Dardarin, leucine-rich 95.9 0.0042 1.4E-07 46.9 2.8 22 83-104 4-25 (184)
323 1nij_A Hypothetical protein YJ 95.9 0.0041 1.4E-07 51.8 3.0 25 80-104 3-27 (318)
324 1yrb_A ATP(GTP)binding protein 95.9 0.0052 1.8E-07 49.1 3.4 24 80-103 13-36 (262)
325 1tq4_A IIGP1, interferon-induc 95.9 0.0047 1.6E-07 53.5 3.3 24 80-103 68-91 (413)
326 1q3t_A Cytidylate kinase; nucl 95.9 0.0049 1.7E-07 48.8 3.2 25 79-103 14-38 (236)
327 2f9l_A RAB11B, member RAS onco 95.8 0.0042 1.4E-07 47.5 2.7 24 81-104 5-28 (199)
328 2wji_A Ferrous iron transport 95.8 0.0062 2.1E-07 45.0 3.5 23 82-104 4-26 (165)
329 3vr4_D V-type sodium ATPase su 95.8 0.0086 2.9E-07 52.3 4.7 89 84-172 154-258 (465)
330 3kta_A Chromosome segregation 95.8 0.0054 1.8E-07 46.3 3.1 21 82-102 27-47 (182)
331 3cmu_A Protein RECA, recombina 95.8 0.033 1.1E-06 56.8 9.4 106 62-172 363-471 (2050)
332 3crm_A TRNA delta(2)-isopenten 95.8 0.0052 1.8E-07 51.4 3.1 22 82-103 6-27 (323)
333 1u0j_A DNA replication protein 95.8 0.011 3.6E-07 48.2 4.8 37 67-103 90-126 (267)
334 2r9v_A ATP synthase subunit al 95.8 0.014 4.9E-07 51.5 6.0 98 70-172 165-277 (515)
335 2qm8_A GTPase/ATPase; G protei 95.8 0.01 3.5E-07 49.9 4.9 34 70-103 44-77 (337)
336 3cf2_A TER ATPase, transitiona 95.7 0.029 1E-06 52.5 8.3 48 57-104 476-534 (806)
337 3a8t_A Adenylate isopentenyltr 95.7 0.0067 2.3E-07 51.0 3.6 23 81-103 40-62 (339)
338 1fzq_A ADP-ribosylation factor 95.7 0.0082 2.8E-07 45.2 3.9 25 80-104 15-39 (181)
339 4eaq_A DTMP kinase, thymidylat 95.7 0.0068 2.3E-07 48.0 3.4 25 80-104 25-49 (229)
340 1r6b_X CLPA protein; AAA+, N-t 95.7 0.013 4.4E-07 54.4 5.8 47 58-104 458-511 (758)
341 1lw7_A Transcriptional regulat 95.7 0.0056 1.9E-07 51.9 3.0 23 81-103 170-192 (365)
342 3exa_A TRNA delta(2)-isopenten 95.7 0.0065 2.2E-07 50.7 3.3 23 81-103 3-25 (322)
343 1ls1_A Signal recognition part 95.6 0.0072 2.5E-07 49.8 3.5 24 80-103 97-120 (295)
344 2wjg_A FEOB, ferrous iron tran 95.6 0.008 2.7E-07 45.1 3.5 24 81-104 7-30 (188)
345 2ocp_A DGK, deoxyguanosine kin 95.6 0.007 2.4E-07 48.0 3.3 24 81-104 2-25 (241)
346 3cmw_A Protein RECA, recombina 95.6 0.02 7E-07 57.5 7.1 102 66-172 716-820 (1706)
347 2ce2_X GTPase HRAS; signaling 95.6 0.006 2.1E-07 44.3 2.7 22 83-104 5-26 (166)
348 2yv5_A YJEQ protein; hydrolase 95.6 0.0096 3.3E-07 49.2 4.1 31 67-102 156-186 (302)
349 2r6f_A Excinuclease ABC subuni 95.6 0.085 2.9E-06 50.2 10.9 130 83-216 652-920 (972)
350 2ged_A SR-beta, signal recogni 95.6 0.012 4.3E-07 44.3 4.4 25 80-104 47-71 (193)
351 1fx0_A ATP synthase alpha chai 95.6 0.015 5.3E-07 51.3 5.4 86 82-172 164-265 (507)
352 4hlc_A DTMP kinase, thymidylat 95.5 0.017 5.9E-07 44.9 5.2 49 82-132 3-52 (205)
353 2dyk_A GTP-binding protein; GT 95.5 0.0081 2.8E-07 43.7 3.1 23 82-104 2-24 (161)
354 1z2a_A RAS-related protein RAB 95.5 0.0067 2.3E-07 44.4 2.7 24 81-104 5-28 (168)
355 2p67_A LAO/AO transport system 95.5 0.016 5.6E-07 48.6 5.3 25 79-103 54-78 (341)
356 3def_A T7I23.11 protein; chlor 95.5 0.018 6.2E-07 46.3 5.4 37 68-104 23-59 (262)
357 1h65_A Chloroplast outer envel 95.5 0.018 6.3E-07 46.4 5.5 38 67-104 25-62 (270)
358 1p9r_A General secretion pathw 95.5 0.014 4.8E-07 50.6 5.0 24 80-103 166-189 (418)
359 2lkc_A Translation initiation 95.5 0.015 5E-07 43.1 4.5 25 80-104 7-31 (178)
360 2nzj_A GTP-binding protein REM 95.5 0.0076 2.6E-07 44.5 2.9 24 81-104 4-27 (175)
361 3end_A Light-independent proto 95.5 0.008 2.7E-07 49.4 3.3 25 79-103 39-63 (307)
362 2v3c_C SRP54, signal recogniti 95.5 0.0082 2.8E-07 52.2 3.5 23 81-103 99-121 (432)
363 3foz_A TRNA delta(2)-isopenten 95.5 0.0079 2.7E-07 50.1 3.2 24 80-103 9-32 (316)
364 2erx_A GTP-binding protein DI- 95.4 0.0084 2.9E-07 44.0 2.9 23 82-104 4-26 (172)
365 1pui_A ENGB, probable GTP-bind 95.4 0.0056 1.9E-07 47.0 1.9 24 81-104 26-49 (210)
366 1u8z_A RAS-related protein RAL 95.4 0.0087 3E-07 43.6 2.9 23 82-104 5-27 (168)
367 2j37_W Signal recognition part 95.4 0.015 5.1E-07 51.6 4.9 24 80-103 100-123 (504)
368 3con_A GTPase NRAS; structural 95.4 0.0078 2.7E-07 45.3 2.7 23 82-104 22-44 (190)
369 2gj8_A MNME, tRNA modification 95.4 0.0088 3E-07 44.7 2.9 23 82-104 5-27 (172)
370 1z08_A RAS-related protein RAB 95.4 0.013 4.4E-07 43.0 3.8 24 81-104 6-29 (170)
371 3q85_A GTP-binding protein REM 95.4 0.009 3.1E-07 43.9 2.9 21 83-103 4-24 (169)
372 1p5z_B DCK, deoxycytidine kina 95.4 0.0063 2.1E-07 49.0 2.2 24 80-103 23-46 (263)
373 1u0l_A Probable GTPase ENGC; p 95.4 0.013 4.4E-07 48.4 4.1 33 67-104 160-192 (301)
374 3q72_A GTP-binding protein RAD 95.4 0.0082 2.8E-07 43.9 2.6 21 83-103 4-24 (166)
375 2gza_A Type IV secretion syste 95.3 0.0071 2.4E-07 51.3 2.5 111 81-202 175-289 (361)
376 2f7s_A C25KG, RAS-related prot 95.3 0.12 4.2E-06 39.5 9.4 24 81-104 25-48 (217)
377 1ek0_A Protein (GTP-binding pr 95.3 0.0099 3.4E-07 43.5 2.9 22 83-104 5-26 (170)
378 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.6E-07 46.2 3.1 23 81-103 34-56 (205)
379 1c1y_A RAS-related protein RAP 95.3 0.0091 3.1E-07 43.6 2.7 22 83-104 5-26 (167)
380 1kao_A RAP2A; GTP-binding prot 95.3 0.0093 3.2E-07 43.4 2.7 23 82-104 4-26 (167)
381 3cr8_A Sulfate adenylyltranfer 95.3 0.0089 3E-07 53.7 3.0 24 80-103 368-391 (552)
382 2qe7_A ATP synthase subunit al 95.3 0.025 8.5E-07 49.9 5.8 98 70-172 152-264 (502)
383 1z0j_A RAB-22, RAS-related pro 95.3 0.01 3.5E-07 43.5 2.9 23 82-104 7-29 (170)
384 1ky3_A GTP-binding protein YPT 95.2 0.01 3.6E-07 43.9 2.9 25 80-104 7-31 (182)
385 1g8f_A Sulfate adenylyltransfe 95.2 0.011 3.7E-07 52.6 3.4 44 61-104 375-418 (511)
386 2qnr_A Septin-2, protein NEDD5 95.2 0.0089 3E-07 49.4 2.7 20 84-103 21-40 (301)
387 1svi_A GTP-binding protein YSX 95.2 0.012 4.2E-07 44.4 3.3 25 80-104 22-46 (195)
388 2cxx_A Probable GTP-binding pr 95.2 0.011 3.7E-07 44.4 2.9 22 83-104 3-24 (190)
389 2afh_E Nitrogenase iron protei 95.2 0.012 4E-07 48.0 3.3 23 81-103 2-24 (289)
390 3pqc_A Probable GTP-binding pr 95.2 0.013 4.5E-07 44.0 3.4 24 81-104 23-46 (195)
391 3gqb_B V-type ATP synthase bet 95.2 0.012 4.2E-07 51.3 3.5 91 82-172 148-261 (464)
392 2c61_A A-type ATP synthase non 95.2 0.014 4.9E-07 51.1 4.0 90 82-171 153-258 (469)
393 1cp2_A CP2, nitrogenase iron p 95.2 0.012 4E-07 47.3 3.2 22 82-103 2-23 (269)
394 2fn4_A P23, RAS-related protei 95.2 0.016 5.3E-07 42.9 3.7 25 80-104 8-32 (181)
395 2www_A Methylmalonic aciduria 95.2 0.013 4.6E-07 49.4 3.6 24 80-103 73-96 (349)
396 1r8s_A ADP-ribosylation factor 95.1 0.011 3.7E-07 43.2 2.7 20 84-103 3-22 (164)
397 1m7b_A RND3/RHOE small GTP-bin 95.1 0.01 3.6E-07 44.5 2.7 24 81-104 7-30 (184)
398 3tw8_B RAS-related protein RAB 95.1 0.013 4.4E-07 43.4 3.1 25 80-104 8-32 (181)
399 3t1o_A Gliding protein MGLA; G 95.1 0.01 3.6E-07 44.6 2.7 23 81-103 14-36 (198)
400 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.011 3.7E-07 43.8 2.7 24 81-104 7-30 (177)
401 1nrj_B SR-beta, signal recogni 95.1 0.013 4.3E-07 45.3 3.2 25 80-104 11-35 (218)
402 1g16_A RAS-related protein SEC 95.1 0.011 3.7E-07 43.3 2.7 23 82-104 4-26 (170)
403 3l0o_A Transcription terminati 95.1 0.096 3.3E-06 45.0 8.7 34 69-103 164-197 (427)
404 2qtf_A Protein HFLX, GTP-bindi 95.1 0.033 1.1E-06 47.2 6.0 25 80-104 178-202 (364)
405 2h92_A Cytidylate kinase; ross 95.1 0.0095 3.3E-07 46.2 2.4 22 82-103 4-25 (219)
406 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4.2E-07 43.5 2.9 24 81-104 6-29 (178)
407 1f6b_A SAR1; gtpases, N-termin 95.1 0.01 3.5E-07 45.4 2.5 22 82-103 26-47 (198)
408 1r2q_A RAS-related protein RAB 95.1 0.011 3.9E-07 43.1 2.7 23 82-104 7-29 (170)
409 4edh_A DTMP kinase, thymidylat 95.1 0.023 7.7E-07 44.5 4.5 24 81-104 6-29 (213)
410 3kkq_A RAS-related protein M-R 95.1 0.016 5.4E-07 43.2 3.5 24 81-104 18-41 (183)
411 4dsu_A GTPase KRAS, isoform 2B 95.1 0.016 5.4E-07 43.3 3.5 23 82-104 5-27 (189)
412 3ihw_A Centg3; RAS, centaurin, 95.1 0.011 3.9E-07 44.6 2.7 24 81-104 20-43 (184)
413 3eph_A TRNA isopentenyltransfe 95.1 0.012 4.1E-07 50.7 3.1 22 82-103 3-24 (409)
414 1z0f_A RAB14, member RAS oncog 95.0 0.012 4E-07 43.5 2.7 24 81-104 15-38 (179)
415 2npi_A Protein CLP1; CLP1-PCF1 95.0 0.0092 3.2E-07 52.3 2.3 23 81-103 138-160 (460)
416 3t5g_A GTP-binding protein RHE 95.0 0.017 5.8E-07 43.0 3.5 24 81-104 6-29 (181)
417 2bme_A RAB4A, RAS-related prot 95.0 0.013 4.6E-07 43.7 2.9 24 81-104 10-33 (186)
418 1upt_A ARL1, ADP-ribosylation 95.0 0.013 4.3E-07 43.1 2.7 24 81-104 7-30 (171)
419 2obl_A ESCN; ATPase, hydrolase 95.0 0.012 4.1E-07 49.7 2.9 24 81-104 71-94 (347)
420 2axn_A 6-phosphofructo-2-kinas 95.0 0.014 4.8E-07 52.0 3.4 24 80-103 34-57 (520)
421 2y8e_A RAB-protein 6, GH09086P 95.0 0.014 4.8E-07 43.1 2.9 23 82-104 15-37 (179)
422 3oaa_A ATP synthase subunit al 95.0 0.042 1.4E-06 48.5 6.3 97 70-172 152-264 (513)
423 3bc1_A RAS-related protein RAB 95.0 0.013 4.3E-07 43.9 2.7 24 81-104 11-34 (195)
424 2a9k_A RAS-related protein RAL 95.0 0.014 4.9E-07 43.4 2.9 24 81-104 18-41 (187)
425 2zts_A Putative uncharacterize 94.9 0.013 4.3E-07 46.1 2.7 53 79-132 28-80 (251)
426 1m2o_B GTP-binding protein SAR 94.9 0.013 4.4E-07 44.5 2.7 23 82-104 24-46 (190)
427 2qag_B Septin-6, protein NEDD5 94.9 0.012 4E-07 51.1 2.7 24 81-104 40-65 (427)
428 3c5c_A RAS-like protein 12; GD 94.9 0.013 4.5E-07 44.2 2.7 24 81-104 21-44 (187)
429 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.014 4.9E-07 43.4 2.8 23 82-104 6-28 (186)
430 2bov_A RAla, RAS-related prote 94.9 0.015 5.1E-07 44.2 2.9 24 81-104 14-37 (206)
431 3llu_A RAS-related GTP-binding 94.9 0.015 5.1E-07 44.2 2.9 23 81-103 20-42 (196)
432 3cbq_A GTP-binding protein REM 94.9 0.012 4.2E-07 44.9 2.4 22 81-102 23-44 (195)
433 2oil_A CATX-8, RAS-related pro 94.9 0.014 4.7E-07 44.1 2.7 24 81-104 25-48 (193)
434 3upu_A ATP-dependent DNA helic 94.9 0.03 1E-06 48.8 5.2 42 59-103 22-67 (459)
435 3euj_A Chromosome partition pr 94.9 0.015 5.2E-07 51.2 3.3 22 82-103 30-51 (483)
436 2efe_B Small GTP-binding prote 94.9 0.014 4.9E-07 43.3 2.7 24 81-104 12-35 (181)
437 3tkl_A RAS-related protein RAB 94.8 0.022 7.4E-07 42.9 3.8 24 81-104 16-39 (196)
438 3clv_A RAB5 protein, putative; 94.8 0.014 4.8E-07 43.9 2.7 24 81-104 7-30 (208)
439 1zbd_A Rabphilin-3A; G protein 94.8 0.016 5.4E-07 44.1 2.9 24 81-104 8-31 (203)
440 1moz_A ARL1, ADP-ribosylation 94.8 0.012 4E-07 43.9 2.1 24 80-103 17-40 (183)
441 2g6b_A RAS-related protein RAB 94.8 0.015 5.1E-07 43.1 2.7 24 81-104 10-33 (180)
442 3bwd_D RAC-like GTP-binding pr 94.8 0.015 5.1E-07 43.2 2.7 23 82-104 9-31 (182)
443 1vg8_A RAS-related protein RAB 94.8 0.02 6.9E-07 43.6 3.5 25 80-104 7-31 (207)
444 3lxx_A GTPase IMAP family memb 94.8 0.016 5.4E-07 45.8 2.9 25 80-104 28-52 (239)
445 1ega_A Protein (GTP-binding pr 94.8 0.016 5.5E-07 47.7 3.1 25 80-104 7-31 (301)
446 2atv_A RERG, RAS-like estrogen 94.8 0.015 5.2E-07 44.1 2.7 24 81-104 28-51 (196)
447 2fg5_A RAB-22B, RAS-related pr 94.8 0.017 5.7E-07 43.8 2.9 24 81-104 23-46 (192)
448 2rcn_A Probable GTPase ENGC; Y 94.8 0.017 5.8E-07 49.0 3.2 23 82-104 216-238 (358)
449 4gzl_A RAS-related C3 botulinu 94.7 0.024 8.3E-07 43.4 3.8 24 81-104 30-53 (204)
450 1ksh_A ARF-like protein 2; sma 94.7 0.017 5.7E-07 43.3 2.8 25 81-105 18-42 (186)
451 2iwr_A Centaurin gamma 1; ANK 94.7 0.011 3.8E-07 43.9 1.8 23 82-104 8-30 (178)
452 1zj6_A ADP-ribosylation factor 94.7 0.041 1.4E-06 41.2 5.0 24 81-104 16-39 (187)
453 3oes_A GTPase rhebl1; small GT 94.7 0.016 5.4E-07 44.2 2.7 24 81-104 24-47 (201)
454 3gmt_A Adenylate kinase; ssgci 94.7 0.016 5.3E-07 46.1 2.7 23 81-103 8-30 (230)
455 3f9v_A Minichromosome maintena 94.7 0.01 3.6E-07 53.7 1.9 48 57-104 294-350 (595)
456 4bas_A ADP-ribosylation factor 94.7 0.02 6.9E-07 43.2 3.3 25 80-104 16-40 (199)
457 2q3h_A RAS homolog gene family 94.7 0.018 6.1E-07 43.7 2.9 24 81-104 20-43 (201)
458 3dz8_A RAS-related protein RAB 94.7 0.016 5.6E-07 43.7 2.7 24 81-104 23-46 (191)
459 3fdi_A Uncharacterized protein 94.7 0.016 5.5E-07 44.9 2.6 23 81-103 6-28 (201)
460 2gf0_A GTP-binding protein DI- 94.7 0.016 5.6E-07 43.7 2.7 24 81-104 8-31 (199)
461 2ck3_A ATP synthase subunit al 94.7 0.037 1.3E-06 48.9 5.2 102 70-172 152-272 (510)
462 2orw_A Thymidine kinase; TMTK, 94.6 0.018 6.3E-07 43.9 2.9 22 82-103 4-25 (184)
463 2x77_A ADP-ribosylation factor 94.6 0.034 1.2E-06 41.7 4.4 25 80-104 21-45 (189)
464 2gf9_A RAS-related protein RAB 94.6 0.019 6.5E-07 43.2 2.9 24 81-104 22-45 (189)
465 2qu8_A Putative nucleolar GTP- 94.6 0.024 8.4E-07 44.2 3.7 25 80-104 28-52 (228)
466 2o52_A RAS-related protein RAB 94.6 0.019 6.4E-07 43.9 2.9 24 81-104 25-48 (200)
467 2ew1_A RAS-related protein RAB 94.6 0.017 5.8E-07 44.4 2.7 24 81-104 26-49 (201)
468 2cjw_A GTP-binding protein GEM 94.6 0.018 6.3E-07 43.7 2.9 23 81-103 6-28 (192)
469 1gwn_A RHO-related GTP-binding 94.6 0.017 5.8E-07 44.5 2.7 24 81-104 28-51 (205)
470 1zd9_A ADP-ribosylation factor 94.6 0.017 6E-07 43.5 2.7 24 81-104 22-45 (188)
471 2fh5_B SR-beta, signal recogni 94.6 0.017 5.9E-07 44.4 2.7 24 81-104 7-30 (214)
472 3ch4_B Pmkase, phosphomevalona 94.6 0.024 8.2E-07 44.1 3.5 24 80-103 10-33 (202)
473 3k53_A Ferrous iron transport 94.6 0.022 7.6E-07 45.9 3.4 24 81-104 3-26 (271)
474 2b6h_A ADP-ribosylation factor 94.6 0.017 5.9E-07 43.8 2.6 24 81-104 29-52 (192)
475 1mky_A Probable GTP-binding pr 94.6 0.039 1.4E-06 47.8 5.2 45 60-104 150-203 (439)
476 2dpy_A FLII, flagellum-specifi 94.6 0.017 5.8E-07 50.3 2.9 25 80-104 156-180 (438)
477 1bif_A 6-phosphofructo-2-kinas 94.6 0.02 6.7E-07 50.2 3.3 23 81-103 39-61 (469)
478 3reg_A RHO-like small GTPase; 94.6 0.018 6.2E-07 43.5 2.7 24 81-104 23-46 (194)
479 2a5j_A RAS-related protein RAB 94.6 0.018 6.2E-07 43.5 2.7 24 81-104 21-44 (191)
480 3ld9_A DTMP kinase, thymidylat 94.6 0.024 8.1E-07 44.8 3.4 25 80-104 20-44 (223)
481 2qag_C Septin-7; cell cycle, c 94.6 0.017 5.9E-07 50.0 2.8 21 84-104 34-54 (418)
482 2il1_A RAB12; G-protein, GDP, 94.6 0.018 6.2E-07 43.6 2.7 24 81-104 26-49 (192)
483 2h17_A ADP-ribosylation factor 94.6 0.019 6.5E-07 42.9 2.7 24 81-104 21-44 (181)
484 2j1l_A RHO-related GTP-binding 94.5 0.02 6.8E-07 44.3 2.9 24 81-104 34-57 (214)
485 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.025 8.6E-07 41.6 3.3 22 81-102 23-44 (149)
486 1z06_A RAS-related protein RAB 94.5 0.019 6.5E-07 43.2 2.7 24 81-104 20-43 (189)
487 1x3s_A RAS-related protein RAB 94.5 0.019 6.5E-07 43.1 2.7 23 82-104 16-38 (195)
488 3mfy_A V-type ATP synthase alp 94.5 0.037 1.3E-06 49.5 4.8 45 82-130 228-275 (588)
489 3cmw_A Protein RECA, recombina 94.5 0.055 1.9E-06 54.4 6.5 87 79-172 1429-1519(1706)
490 2oap_1 GSPE-2, type II secreti 94.5 0.027 9.1E-07 50.1 3.9 22 82-103 261-282 (511)
491 2p5s_A RAS and EF-hand domain 94.5 0.02 6.7E-07 43.6 2.7 24 81-104 28-51 (199)
492 2h57_A ADP-ribosylation factor 94.5 0.017 5.9E-07 43.5 2.4 25 81-105 21-45 (190)
493 2bcg_Y Protein YP2, GTP-bindin 94.5 0.02 6.7E-07 43.8 2.7 24 81-104 8-31 (206)
494 1m8p_A Sulfate adenylyltransfe 94.5 0.022 7.7E-07 51.3 3.4 24 80-103 395-418 (573)
495 2qag_A Septin-2, protein NEDD5 94.4 0.016 5.4E-07 49.1 2.3 47 57-104 14-60 (361)
496 4tmk_A Protein (thymidylate ki 94.4 0.03 1E-06 43.8 3.7 50 82-132 4-55 (213)
497 2fv8_A H6, RHO-related GTP-bin 94.4 0.021 7.3E-07 43.7 2.7 24 81-104 25-48 (207)
498 2r8r_A Sensor protein; KDPD, P 94.3 0.022 7.6E-07 45.1 2.7 22 82-103 7-28 (228)
499 2atx_A Small GTP binding prote 94.3 0.022 7.5E-07 43.0 2.7 24 81-104 18-41 (194)
500 1ypw_A Transitional endoplasmi 94.3 0.026 8.9E-07 52.9 3.6 48 57-104 476-534 (806)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1.1e-27 Score=216.32 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=126.0
Q ss_pred eeehhhHHHHHHHHhcC-CCCceEEEEEccCCCcHHHHHHHHhc--CcCCCCCCCeEEEE--eCc--CChHHHHHHHHHH
Q 040890 61 VMLLEDLKELLNQLIEG-PPQLSVVAVIDSYGFDKAVFAAEAYN--SDYVKSYFHCHAWV--SAN--LDPYVILDNILKI 133 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv--s~~--~~~~~~~~~il~~ 133 (221)
+||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ +.+++.+|++++|| ++. ++...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34589999999999999999999998 67899999999999 555 3789999999999
Q ss_pred hccCCc--chhcccC-CHHHHHHHHHHHhCCc-eEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCC
Q 040890 134 MMPQSA--LREIMGK-GFRQRKTALHDYLKNK-RYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLD 209 (221)
Q Consensus 134 l~~~~~--~~~~~~~-~~~~l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~ 209 (221)
++.... ...+.+. +...+...+++.|+++ ||||||||||+...+ .+.. .+||+||||||++.|+..+++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~- 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ- 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS-
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC-
Confidence 986532 1222333 6788899999999996 999999999998765 2211 269999999999999998863
Q ss_pred CCceEecccCC
Q 040890 210 NDLMFTLILFQ 220 (221)
Q Consensus 210 ~~~v~~l~~~~ 220 (221)
..++|+|..++
T Consensus 284 ~~~~~~l~~L~ 294 (549)
T 2a5y_B 284 TCEFIEVTSLE 294 (549)
T ss_dssp CEEEEECCCCC
T ss_pred CCeEEECCCCC
Confidence 44689988775
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.90 E-value=3.1e-23 Score=200.78 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=119.4
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcC-CCCCC-CeEEEE--eCcC--ChHHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDY-VKSYF-HCHAWV--SANL--DPYVILDN 129 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F-~~~~wv--s~~~--~~~~~~~~ 129 (221)
..+.||||++++++|.++|...+...++|+|+||||+||||||+++|++.+ ...+| +..+|+ ++.. +....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 356799999999999999987666789999999999999999999998643 35556 566699 4432 34455677
Q ss_pred HHHHhccCCcchhcccCCHHHHHHHHHHHhCCc--eEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 130 ILKIMMPQSALREIMGKGFRQRKTALHDYLKNK--RYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
++..+............+...+.+.++..|.++ |+||||||||+...|..+ .+||+||||||++.++..+.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 777776543322222227888999999999877 999999999998776553 57899999999999997654
Q ss_pred CCCCceEeccc
Q 040890 208 LDNDLMFTLIL 218 (221)
Q Consensus 208 ~~~~~v~~l~~ 218 (221)
. ..++|++..
T Consensus 275 ~-~~~~~~~~~ 284 (1249)
T 3sfz_A 275 G-PKHVVPVES 284 (1249)
T ss_dssp S-CBCCEECCS
T ss_pred C-CceEEEecC
Confidence 3 456777764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=3.2e-23 Score=195.29 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=114.2
Q ss_pred eeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCe-EEEE--eCcCChHHHHHHHHHHhcc
Q 040890 60 CVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHC-HAWV--SANLDPYVILDNILKIMMP 136 (221)
Q Consensus 60 ~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv--s~~~~~~~~~~~il~~l~~ 136 (221)
.|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|++ ++|+ ++.++...++..|+..+..
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998643 3789999999999999999999987678889987 8899 7778888888888775432
Q ss_pred CC---cchh----cccCCHHHHHHHHHHHh---CCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 137 QS---ALRE----IMGKGFRQRKTALHDYL---KNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 137 ~~---~~~~----~~~~~~~~l~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
.. .... ....+.+.+.+.+++.| .+||+||||||||+.+.|+.+. +||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 11 0000 00013455667777766 7899999999999988888752 689999999999999765
Q ss_pred cCCCCceEecc
Q 040890 207 RLDNDLMFTLI 217 (221)
Q Consensus 207 ~~~~~~v~~l~ 217 (221)
.+ ..+|+|.
T Consensus 282 ~g--~~vy~Le 290 (1221)
T 1vt4_I 282 SA--ATTTHIS 290 (1221)
T ss_dssp HH--HSSCEEE
T ss_pred CC--CeEEEec
Confidence 42 2356665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=175.40 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=110.8
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCC-CCCC-CeEEEE-eCcCChHHHHHHH--
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV-KSYF-HCHAWV-SANLDPYVILDNI-- 130 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv-s~~~~~~~~~~~i-- 130 (221)
.++.||||+.+++.|.++|.....+.++++|+||||+||||||..++++.++ ..+| +..+|+ ....+...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 3567999999999999999865556899999999999999999999986544 6789 478999 3333444444444
Q ss_pred -HHHhccCCcchhcccC-CHHHHHHHHHHHhCC--ceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 131 -LKIMMPQSALREIMGK-GFRQRKTALHDYLKN--KRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 131 -l~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
+..+....... .... +...+...+...+.+ +++||||||+|+...+.. + .+|++||||||+..++..+
T Consensus 202 l~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 202 LCTRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTTC
T ss_pred HHHHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHhc
Confidence 33444211110 1122 677888888888865 789999999998766543 3 4689999999999998876
Q ss_pred cCCCCceEecc
Q 040890 207 RLDNDLMFTLI 217 (221)
Q Consensus 207 ~~~~~~v~~l~ 217 (221)
. +..|++.
T Consensus 274 ~---~~~~~v~ 281 (591)
T 1z6t_A 274 M---GPKYVVP 281 (591)
T ss_dssp C---SCEEEEE
T ss_pred C---CCceEee
Confidence 5 3456654
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=1.8e-12 Score=111.82 Aligned_cols=144 Identities=17% Similarity=0.072 Sum_probs=95.2
Q ss_pred CCCceeeehhhHHHHHHHH-hc---C-CCCceEEEE--EccCCCcHHHHHHHHhcCcCCC---CCCC-eEEEE--eCcCC
Q 040890 56 SKERCVMLLEDLKELLNQL-IE---G-PPQLSVVAV--IDSYGFDKAVFAAEAYNSDYVK---SYFH-CHAWV--SANLD 122 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv--s~~~~ 122 (221)
.+..++||+.+++.|.++| .. + ......+.| +|++|+||||||+.+++..... ..|. ..+|+ ....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3578999999999999988 42 2 023456666 9999999999999998742110 0122 24566 45677
Q ss_pred hHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHhC--CceEEEEEeCCCCh--------HHHHHHhhhcCC---CC
Q 040890 123 PYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDYLK--NKRYLIVLEDVLTN--------EVRKYLGEALPD---RH 188 (221)
Q Consensus 123 ~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~l~~---~~ 188 (221)
...++..++.+++..... .. +...+...+.+.+. +++++|||||++.. ..+..+...+.. .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV----RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred HHHHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 889999999988653211 12 45566777777774 77999999999742 444444333321 12
Q ss_pred --CCeEEEEEcCChHHH
Q 040890 189 --NGSRVLAMLTSNEIF 203 (221)
Q Consensus 189 --~gs~IivTTR~~~va 203 (221)
.+..+|+||+..++.
T Consensus 176 ~~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRAL 192 (412)
T ss_dssp SCCBEEEEEEEEETHHH
T ss_pred CCceEEEEEEeccccHH
Confidence 455688888866644
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.30 E-value=1.7e-11 Score=103.24 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=89.1
Q ss_pred cCCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCc------CChHHH
Q 040890 55 SSKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SAN------LDPYVI 126 (221)
Q Consensus 55 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~------~~~~~~ 126 (221)
..+..++||+.+++.|.+++..+ .++.|+|++|+|||||++.+.+. . . .+|+ ... .+...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHH
Confidence 34667999999999999998762 68999999999999999999874 2 1 5677 211 245666
Q ss_pred HHHHHHHhccC-------------CcchhcccC-CHHHHHHHHHHHhCC-ceEEEEEeCCCCh---------HHHHHHhh
Q 040890 127 LDNILKIMMPQ-------------SALREIMGK-GFRQRKTALHDYLKN-KRYLIVLEDVLTN---------EVRKYLGE 182 (221)
Q Consensus 127 ~~~il~~l~~~-------------~~~~~~~~~-~~~~l~~~l~~~L~~-kr~LlVlDdv~~~---------~~~~~l~~ 182 (221)
+..+...+... ......... +..++.+.+.+.++. ++++|||||++.. ..+..|..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 66666655320 000000112 566677777766643 3899999999752 22333333
Q ss_pred hcCCCCCCeEEEEEcCChHH
Q 040890 183 ALPDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 183 ~l~~~~~gs~IivTTR~~~v 202 (221)
.+. ..++.++|+|++...+
T Consensus 158 ~~~-~~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 158 AYD-SLPNLKIILTGSEVGL 176 (350)
T ss_dssp HHH-HCTTEEEEEEESSHHH
T ss_pred HHH-hcCCeEEEEECCcHHH
Confidence 222 2247889999987654
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=9.1e-12 Score=106.55 Aligned_cols=142 Identities=12% Similarity=0.000 Sum_probs=94.3
Q ss_pred CCceeeehhhHHHHHHHHhc--CCCCceEEEEEccCCCcHHHHHHHHhcCcCC----CCC--CCeEEEE--eCcC-ChHH
Q 040890 57 KERCVMLLEDLKELLNQLIE--GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV----KSY--FHCHAWV--SANL-DPYV 125 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~--F~~~~wv--s~~~-~~~~ 125 (221)
+..++||+.+++.+.++|.. .......+.|+|++|+||||||+.+++...- ... ....+|+ +... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 47899999999999988854 2334568999999999999999999873210 111 2244566 4445 7788
Q ss_pred HHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHhCCceEEEEEeCCCChHH---HHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 126 ILDNILKIMMPQSALREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVLTNEV---RKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 126 ~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
++..++.++...... ... ....+...+.+.+..++.+|||||++.... .+.+...+.....+..+|+||+...
T Consensus 99 ~~~~l~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVP---KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCC---SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCC---CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 889988888432110 112 456777888888877777999999974221 1220222221116788999998753
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.4e-11 Score=104.91 Aligned_cols=159 Identities=9% Similarity=0.141 Sum_probs=101.2
Q ss_pred CCCceeeehhhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC---CeEEEE--eCcCChHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF---HCHAWV--SANLDPYVILD 128 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv--s~~~~~~~~~~ 128 (221)
.+..++||+.+++.|.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|+ ....+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3578999999999999988742 234568899999999999999999873 32221 234566 44456677788
Q ss_pred HHHHHhccCCcchhcccC-CHHHHHHHHHHHhC--CceEEEEEeCCCC------hHHHHHHhhhcCC-CCCCeEEEEEcC
Q 040890 129 NILKIMMPQSALREIMGK-GFRQRKTALHDYLK--NKRYLIVLEDVLT------NEVRKYLGEALPD-RHNGSRVLAMLT 198 (221)
Q Consensus 129 ~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~------~~~~~~l~~~l~~-~~~gs~IivTTR 198 (221)
.++.+++.... ... +...+.+.+.+.+. +++.+||||+++. ...+..+...+.. ...+..+|+||+
T Consensus 96 ~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 96 DLLESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHTTTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 88777754221 112 45666666666663 4589999999863 3345555444321 234567888888
Q ss_pred ChHHHhhccC-----CCCceEecccCC
Q 040890 199 SNEIFRFCRL-----DNDLMFTLILFQ 220 (221)
Q Consensus 199 ~~~va~~~~~-----~~~~v~~l~~~~ 220 (221)
.......+.. .....+++.++.
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~ 198 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYN 198 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCC
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCC
Confidence 7654433321 112356666653
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=1.2e-10 Score=99.61 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=98.8
Q ss_pred CCceeeehhhHHHHHHHHhc----CCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC-CeEEEE--eCcCChHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIE----GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF-HCHAWV--SANLDPYVILDN 129 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv--s~~~~~~~~~~~ 129 (221)
++.++||+.+++.|.+++.. .....+.+.|+|++|+||||||+.+.+. ..... ...+|+ +...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 47799999999999999865 2222348899999999999999999874 22221 234556 455567888999
Q ss_pred HHHHhccCCcchhcccC-CHHHHHHHHHHHhC--CceEEEEEeCCCC--hHHHHHHhhhcCCCC----CCeEEEEEcCCh
Q 040890 130 ILKIMMPQSALREIMGK-GFRQRKTALHDYLK--NKRYLIVLEDVLT--NEVRKYLGEALPDRH----NGSRVLAMLTSN 200 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~--~kr~LlVlDdv~~--~~~~~~l~~~l~~~~----~gs~IivTTR~~ 200 (221)
++..++.... ... ....+.+.+...+. +++.+||||+++. ...+..|...+.... .+..+|++|+..
T Consensus 94 l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 94 IARSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 9888865321 112 55666666666663 6688999999964 566666666654311 477888888877
Q ss_pred HHHhh
Q 040890 201 EIFRF 205 (221)
Q Consensus 201 ~va~~ 205 (221)
.....
T Consensus 170 ~~~~~ 174 (389)
T 1fnn_A 170 AVLNN 174 (389)
T ss_dssp HHHHT
T ss_pred hHHHH
Confidence 55443
No 10
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=4.8e-11 Score=100.58 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=82.9
Q ss_pred CCCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCc------CChHHHHH
Q 040890 56 SKERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SAN------LDPYVILD 128 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~------~~~~~~~~ 128 (221)
.+..++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. .. ..+|+ ... .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHHHHH
Confidence 46789999999999999 643 589999999999999999998742 22 24677 222 24455555
Q ss_pred HHHHHhcc-------------CC---cchh---cc-----cC-CHHHHHHHHHHHhCCceEEEEEeCCCCh-----HHHH
Q 040890 129 NILKIMMP-------------QS---ALRE---IM-----GK-GFRQRKTALHDYLKNKRYLIVLEDVLTN-----EVRK 178 (221)
Q Consensus 129 ~il~~l~~-------------~~---~~~~---~~-----~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~-----~~~~ 178 (221)
.+...+.. .. ..+. .. .. ....+.+.+.+..+ ++++|||||++.. ..|.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 54443311 00 0000 00 12 55666666665433 4999999999641 2222
Q ss_pred HHhhhcCCCCCCeEEEEEcCChHH
Q 040890 179 YLGEALPDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 179 ~l~~~l~~~~~gs~IivTTR~~~v 202 (221)
.+...+.+...+.++|+|++....
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHH
Confidence 222222222247889999998764
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.20 E-value=7.3e-11 Score=100.61 Aligned_cols=138 Identities=13% Similarity=0.081 Sum_probs=91.9
Q ss_pred CCceeeehhhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCC------CCeEEEE--eCcCChHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY------FHCHAWV--SANLDPYVI 126 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv--s~~~~~~~~ 126 (221)
+..++||+.+++.+.++|... ......+.|+|++|+||||||+.+++. .... -...+|+ ....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 478999999999999998542 234567889999999999999999873 2111 1133466 555677888
Q ss_pred HHHHHHHhccCCcchhcccC-CHHHHHHHHHHHh--CCceEEEEEeCCCChH-------HHHHHhhhcCCC--CCCeEEE
Q 040890 127 LDNILKIMMPQSALREIMGK-GFRQRKTALHDYL--KNKRYLIVLEDVLTNE-------VRKYLGEALPDR--HNGSRVL 194 (221)
Q Consensus 127 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L--~~kr~LlVlDdv~~~~-------~~~~l~~~l~~~--~~gs~Ii 194 (221)
+..++.+++.... ... ....+...+.+.+ .+++.+||||+++... .+..+....... ..+..+|
T Consensus 96 ~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 96 ASAIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 9999998865322 112 4666677777777 4568999999997432 222222222211 3456788
Q ss_pred EEcCCh
Q 040890 195 AMLTSN 200 (221)
Q Consensus 195 vTTR~~ 200 (221)
.||+..
T Consensus 172 ~~t~~~ 177 (387)
T 2v1u_A 172 GITNSL 177 (387)
T ss_dssp EECSCS
T ss_pred EEECCC
Confidence 888765
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=2.7e-10 Score=90.26 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=77.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
..+++|++..++.|..++..+. ....+.|+|++|+||||||+.+++.......+.. ........ ...+......
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----TPCGVCDN-CREIEQGRFV 95 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS----SCCSCSHH-HHHHHTTCCS
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCcccHH-HHHHhccCCc
Confidence 4579999999999999997643 2357889999999999999998863211111000 00000000 0111100000
Q ss_pred CCcchhcccC-CHHHHHHHHHHHh-----CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 137 QSALREIMGK-GFRQRKTALHDYL-----KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 137 ~~~~~~~~~~-~~~~l~~~l~~~L-----~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
.......... .... ...+.+.+ .+++.+||+||++ +...++.|...+.....+..+|+||+...
T Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 96 DLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000000000 1111 22222222 3567999999996 46777888777765556788899887643
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=2e-09 Score=84.17 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=73.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCe-EEEE--eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHC-HAWV--SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv--s~~~~~~~~~~~il~~ 133 (221)
..+++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++... ...+.. .+.+ +....... +...+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV-VRHKIKE 91 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHH-HHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHH-HHHHHHH
Confidence 4578999999999999998754 33388999999999999999887311 111221 2223 11112111 1111111
Q ss_pred hccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 134 MMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 134 l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
+.... ....+++.+||+||++. ...++.|...+.....++.+|+||+..
T Consensus 92 ~~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 92 FARTA------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHTSC------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred Hhccc------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 11000 00135789999999974 455666665555445678889888765
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=1.1e-08 Score=85.19 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=73.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC-eEEEE--eCcCChHHHHHHHHHH
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH-CHAWV--SANLDPYVILDNILKI 133 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv--s~~~~~~~~~~~il~~ 133 (221)
..+++|++..++.|.+++..+.. ..+.++|++|+||||+|+.+.+... ...+. ..+++ +.... ...+++++..
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 95 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRG-IDVVRNQIKH 95 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCS-HHHHHTHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccC-hHHHHHHHHH
Confidence 45799999999999999987542 2388999999999999999887311 11111 22333 11112 1222222222
Q ss_pred hccCCcchhcccCCHHHHHHHHHHHh-CCceEEEEEeCCCC--hHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 134 MMPQSALREIMGKGFRQRKTALHDYL-KNKRYLIVLEDVLT--NEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 134 l~~~~~~~~~~~~~~~~l~~~l~~~L-~~kr~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
+.... ..+ .+++.+||+||++. ...++.|...+.....++.+|+||...
T Consensus 96 ~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 96 FAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 11000 012 45689999999974 455666655554445678888888653
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=3.2e-08 Score=82.41 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=72.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC-eEEEEeCcCChHHHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH-CHAWVSANLDPYVILDNILKIMM 135 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wvs~~~~~~~~~~~il~~l~ 135 (221)
-.+++|++..++.|.+++..+. ...+.++|++|+||||+|+.+++... ...+. ..+.+... +.... .
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~-~~~~~-~------- 91 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNAS-DERGI-N------- 91 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETT-CHHHH-H-------
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeecc-ccCch-H-------
Confidence 4569999999999999998754 33488999999999999999887311 11111 11222111 10000 0
Q ss_pred cCCcchhcccCCHHHHHHHHHHH--h-CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 136 PQSALREIMGKGFRQRKTALHDY--L-KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
............ + .+++.++|+|+++ +...++.|...+.....++++|+||...
T Consensus 92 -----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 92 -----------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 000111111111 1 2578899999997 3466677766665445678888888654
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=1.2e-07 Score=72.30 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=39.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-..++|+++.++.+.+++.... ...+.|+|++|+|||+||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999987733 456789999999999999998773
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.2e-07 Score=78.05 Aligned_cols=111 Identities=8% Similarity=0.076 Sum_probs=71.6
Q ss_pred ceeeehhhHHHHHHHHhc--CCCCceEEEEEccCCCcHHHHHHHHhcCcCCC---CCCC--eEEEE--eCcCChHHHHHH
Q 040890 59 RCVMLLEDLKELLNQLIE--GPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVK---SYFH--CHAWV--SANLDPYVILDN 129 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~--~~~wv--s~~~~~~~~~~~ 129 (221)
.+.||+++++.|...|.. .......+.|+|++|+|||++++.+.+..... .... ..+.+ ....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999988754 12346778899999999999999998742111 1111 23455 445677889999
Q ss_pred HHHHhccCCcchhcccC-CHHHHHHHHHHH--hCCceEEEEEeCCCC
Q 040890 130 ILKIMMPQSALREIMGK-GFRQRKTALHDY--LKNKRYLIVLEDVLT 173 (221)
Q Consensus 130 il~~l~~~~~~~~~~~~-~~~~l~~~l~~~--L~~kr~LlVlDdv~~ 173 (221)
|++++...... .. ....+...+... -.+++++++||++..
T Consensus 101 I~~~L~g~~~~----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~ 143 (318)
T 3te6_A 101 IWFAISKENLC----GDISLEALNFYITNVPKAKKRKTLILIQNPEN 143 (318)
T ss_dssp HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS
T ss_pred HHHHhcCCCCC----chHHHHHHHHHHHHhhhccCCceEEEEecHHH
Confidence 99999653210 11 333333333332 246789999999874
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.60 E-value=2.1e-07 Score=78.98 Aligned_cols=138 Identities=12% Similarity=-0.020 Sum_probs=75.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhcc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMP 136 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~ 136 (221)
-.+++|++..++.|.+.+..+. ....+.|+|++|+||||+|+.+.+.......+. ..+.........+......
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-----ATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-----SSCCSSSHHHHHHHTSCCS
T ss_pred hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-----CCCCcccHHHHHHhccCCC
Confidence 3569999999999999997644 235678999999999999998876322111100 0000000011111110000
Q ss_pred CC---cchhcccC-CHHHHHHHHHHH-hCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 137 QS---ALREIMGK-GFRQRKTALHDY-LKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 137 ~~---~~~~~~~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
.. ........ ....+.+.+... ..+++.+||+||+. +...++.|...+.....+..+|++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00 00000011 333333332211 13567899999996 4566777776665545567777777643
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.54 E-value=2.6e-07 Score=70.17 Aligned_cols=46 Identities=7% Similarity=0.036 Sum_probs=38.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|++..++.+.+.+.... ...+.|+|++|+|||+||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999997633 456689999999999999988763
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.47 E-value=3e-07 Score=68.19 Aligned_cols=46 Identities=11% Similarity=-0.106 Sum_probs=35.1
Q ss_pred ceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 59 RCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+++|....++.+.+.+..-.....-|.|+|..|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999998887542222344679999999999999999884
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.47 E-value=3.6e-07 Score=74.91 Aligned_cols=48 Identities=13% Similarity=0.024 Sum_probs=38.8
Q ss_pred CCCceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 56 SKERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|.+..++.|.+.+... -....-+.|+|++|+|||+||+.+.+
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4567999999999998887431 12345688999999999999999988
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.44 E-value=1e-06 Score=73.60 Aligned_cols=118 Identities=12% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMM 135 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~ 135 (221)
-.+++|.+..++.|.+++..+. ...++.+.|++|+|||++|+.+.+. ... ..+.+ ..... ...+++++....
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~~~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSDCK-IDFVRGPLTNFA 97 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTTCC-HHHHHTHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccccC-HHHHHHHHHHHH
Confidence 4679999999999999998654 3467788899999999999999873 311 12233 22222 222222222211
Q ss_pred cCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 136 PQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
.... ..+++.+|++|++.. ....+.|...+.....+..+|+||...
T Consensus 98 ~~~~-------------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 98 SAAS-------------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HBCC-------------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred hhcc-------------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 1000 124788999999985 335555555544333456788887653
No 23
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=6.2e-07 Score=68.61 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHhcCC-CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchh
Q 040890 64 LEDLKELLNQLIEGP-PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALRE 142 (221)
Q Consensus 64 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~ 142 (221)
...++.+.+++.+-. .....+.++|++|+||||||+.+++.......+. .+++ +..+++..+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~----~~~~~~~~~~~~~~~~~~--- 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF----DTKDLIFRLKHLMDEGKD--- 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE----EHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE----EHHHHHHHHHHHhcCchH---
Confidence 334444444444322 2357889999999999999999987321111221 1222 334444444443322111
Q ss_pred cccCCHHHHHHHHHHHhCCceEEEEEeCCCC--hHHHH--HHhhhcCC-CCCCeEEEEEcCCh
Q 040890 143 IMGKGFRQRKTALHDYLKNKRYLIVLEDVLT--NEVRK--YLGEALPD-RHNGSRVLAMLTSN 200 (221)
Q Consensus 143 ~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~l~~-~~~gs~IivTTR~~ 200 (221)
. .+.+.+. +.-+|||||++. ...|. .+...+.. ...|..+|+||...
T Consensus 92 ----~--~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T--KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S--HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H--HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 2222222 456999999972 22332 22222211 12467788888643
No 24
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=3.9e-07 Score=75.43 Aligned_cols=120 Identities=10% Similarity=0.049 Sum_probs=72.1
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCe-EEEE-eCcCChHHHHHHHHHHh
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHC-HAWV-SANLDPYVILDNILKIM 134 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv-s~~~~~~~~~~~il~~l 134 (221)
-.+++|++..++.|.+++..+. ...+.++|++|+|||++|+.+.+... ...+.. .+.+ ......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~----------- 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG----------- 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC-----------
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC-----------
Confidence 4569999999999998887643 23378999999999999999887310 111111 1122 111000
Q ss_pred ccCCcchhcccCCHHHHHHHHHHH--h-CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 135 MPQSALREIMGKGFRQRKTALHDY--L-KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~~~--L-~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
.+ ........+... + .+++.++|+|++. +....+.|...+.....++.+|+||...
T Consensus 82 ---------~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 82 ---------ID-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp ---------TT-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred ---------hH-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 00 111111111111 1 2568899999996 3456677777776555678888887654
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=2.2e-06 Score=75.13 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=65.8
Q ss_pred Ccee-eehh--hHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC--CeEEEEeCcCChHHHHHHHHH
Q 040890 58 ERCV-MLLE--DLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF--HCHAWVSANLDPYVILDNILK 132 (221)
Q Consensus 58 ~~~v-G~~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wvs~~~~~~~~~~~il~ 132 (221)
.+|+ |... ....+......... ...+.|+|++|+||||||+.+.+. ....+ ...+++ +...+..++..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v----~~~~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYI----TSEKFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEE----EHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEe----eHHHHHHHHHH
Confidence 4565 5333 23334444444332 667889999999999999999873 32222 123344 12233444444
Q ss_pred HhccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCCh----HHHHHHhhhcCC-CCCCeEEEEEcCC
Q 040890 133 IMMPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLTN----EVRKYLGEALPD-RHNGSRVLAMLTS 199 (221)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~ 199 (221)
.+... .. ..+...+..+..+|+|||+... ...+.+...+.. ...|..||+||.+
T Consensus 178 ~~~~~---------~~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 178 SMKEG---------KL----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHTT---------CH----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHcc---------cH----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 43221 11 1233444446779999999632 233334333321 1346778888875
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.34 E-value=9.9e-06 Score=68.57 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCceeeehhhHHH---HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKE---LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+++|.+..++. +.+.+..+......+.++|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999988776 45555554433468889999999999999999874
No 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.6e-07 Score=75.94 Aligned_cols=45 Identities=9% Similarity=-0.152 Sum_probs=36.1
Q ss_pred CCceeeehhhHHHHHHHH-hcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQL-IEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+...+.|.+++ ..+. ... +.++|+.|+||||||+.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 456899999999988888 4433 233 88999999999999998766
No 28
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.30 E-value=1.1e-06 Score=68.42 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=36.6
Q ss_pred CCceeeeh----hhHHHHHHHHhcCCCC--ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE
Q 040890 57 KERCVMLL----EDLKELLNQLIEGPPQ--LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV 117 (221)
Q Consensus 57 ~~~~vG~~----~~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 117 (221)
-.++++.. ..++.+.+++...... ...+.|+|++|+|||+||+.+++. ........+|+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~ 88 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIV 88 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEE
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEE
Confidence 34566543 3445555665543222 267889999999999999999884 22222344555
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=2.3e-06 Score=70.77 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=34.7
Q ss_pred ceeeehhhHHHHHHHHhc-------------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIE-------------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++|.+..++.|.+++.. .......+.++|++|+|||+||+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 588998888888876542 123345688999999999999987765
No 30
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.24 E-value=8.6e-07 Score=65.54 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=33.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-+++|.+..++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35789988888888887531112234678999999999999999884
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.22 E-value=5.7e-06 Score=66.58 Aligned_cols=48 Identities=10% Similarity=-0.003 Sum_probs=35.7
Q ss_pred CCceeeehhhHHHHHHHHh---cCC-------CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLI---EGP-------PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.|.+++. ... ....-+.++|++|+|||+||+.+.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999888887766542 211 23455789999999999999999883
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.20 E-value=1.1e-05 Score=67.63 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=38.6
Q ss_pred CCCceeeehhhHHHHHHHHhc----------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIE----------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.+..++.|.+.+.. ......-+.++|++|+|||+||+.+.+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999888731 1123456889999999999999999883
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=7e-07 Score=75.12 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=71.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC-eEEEE-eCcCChHHHHHHHHHHh
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH-CHAWV-SANLDPYVILDNILKIM 134 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv-s~~~~~~~~~~~il~~l 134 (221)
-.+++|.++.++.|..++..+.. ..+.++|++|+||||||+.+.+.......+. ....+ .........+.+.+..+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 45789999999999999877542 2378999999999999999887311110111 12223 22212222222222222
Q ss_pred ccCCcchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCC
Q 040890 135 MPQSALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~ 199 (221)
...... ..... .....-.++.-+|++|++. +....+.|...+.......++|++|..
T Consensus 114 ~~~~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 114 ARLTVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp HHSCCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred hhhccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 110000 00000 0011112456799999986 344556665555444456677777643
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=7.8e-06 Score=66.59 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=35.5
Q ss_pred CCceeeehhhHHHHHHH-------Hhc-CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQ-------LIE-GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|....++.+... +.. .......+.++|++|+|||+||+.+.+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678887777766662 322 1345677889999999999999999883
No 35
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.17 E-value=4.2e-06 Score=69.92 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccC
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGK 146 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~ 146 (221)
...+..++.........+.|+|++|+||||||+.+.+..... .+ ..+++ +...+...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i----~~~~~~~~~~~~~~~~--------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYS----SADDFAQAMVEHLKKG--------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEE----EHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEE----EHHHHHHHHHHHHHcC---------
Confidence 344555554443345678899999999999999998732111 11 22344 1223333343333211
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCCCh----HHHHHHhhhcCC-CCCCeEEEEEcCC
Q 040890 147 GFRQRKTALHDYLKNKRYLIVLEDVLTN----EVRKYLGEALPD-RHNGSRVLAMLTS 199 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~ 199 (221)
...... ..+. +..+|+|||+... ...+.+...+.. ...|..||+||.+
T Consensus 88 ~~~~~~----~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 TINEFR----NMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp CHHHHH----HHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cHHHHH----HHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 112222 2222 3679999998632 223333333211 1235678888753
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.16 E-value=8.7e-06 Score=68.24 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=39.0
Q ss_pred CCceeeehhhHHHHHHHHhcC---CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG---PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.+..++... ......+.|+|++|+|||+||+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 567999999999999988642 23345678999999999999999987
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.16 E-value=1.1e-05 Score=70.72 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCceeeehhhH---HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDL---KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..+ ..|...+..+. ...+.++|++|+||||||+.+.+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 56789998888 77888777654 46788999999999999999998
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.16 E-value=2.7e-06 Score=70.75 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=38.2
Q ss_pred CCceeeehhhHHHHHHHHhc---CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE---GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|++..++.+..++.. .......+.|+|++|+|||+||+.+.+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999998888753 1123456789999999999999999873
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=6.8e-06 Score=73.32 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=39.9
Q ss_pred CCceeeehhhHHHHHHHHhcCC---------------CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGP---------------PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|++..++.|.++|.... ...+.+.|+|++|+||||||+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999996510 13468899999999999999999883
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.14 E-value=2e-05 Score=65.27 Aligned_cols=49 Identities=18% Similarity=0.027 Sum_probs=38.7
Q ss_pred CCCceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.+..++.|.+++... -.....+.++|++|+|||+||+.+.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3457899999988888877431 133567889999999999999999983
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.11 E-value=5.5e-07 Score=71.33 Aligned_cols=47 Identities=6% Similarity=-0.071 Sum_probs=33.2
Q ss_pred CCCceeee---hhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVML---LEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~---~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|. +..++.+..++... ....+.|+|++|+||||||+.+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567763 34555566655543 3577889999999999999998873
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.10 E-value=3.6e-05 Score=66.06 Aligned_cols=47 Identities=11% Similarity=-0.040 Sum_probs=37.7
Q ss_pred CCceeeehhhHHHHHHHHhcC----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.|.+++... .....-+.|+|++|+|||+||+.+.+
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998887320 11246788999999999999999987
No 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.10 E-value=5.2e-06 Score=67.31 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=33.7
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+++|.+..+..+.+.+..-......+.|+|..|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45789998888888777542222345679999999999999999884
No 44
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.09 E-value=4e-05 Score=62.30 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=67.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC------------C---CC-CeEEEEeCc------CChHH------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK------------S---YF-HCHAWVSAN------LDPYV------------ 125 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------~---~F-~~~~wvs~~------~~~~~------------ 125 (221)
.-.+++|+|+.|+|||||.+.+..-.... . .+ ....++.+. .++.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 35789999999999999999997632110 0 00 123455221 12211
Q ss_pred ------HHHHHHHHhccCCcc---hhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHH---HHHHhhhcCCCCCC
Q 040890 126 ------ILDNILKIMMPQSAL---REIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEV---RKYLGEALPDRHNG 190 (221)
Q Consensus 126 ------~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~---~~~l~~~l~~~~~g 190 (221)
...++++.++..... +...+....+ .-.+...|..++-+|+||.--+ ... ...+...+. ..|
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q-Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g 196 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR-KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEG 196 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHH-HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTT
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHH-HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCC
Confidence 122334444332111 1111113333 3456667778888999998652 222 222222232 236
Q ss_pred eEEEEEcCChHHHhhcc
Q 040890 191 SRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 191 s~IivTTR~~~va~~~~ 207 (221)
..||++|.+.+.+..++
T Consensus 197 ~tiiivtHd~~~~~~~~ 213 (256)
T 1vpl_A 197 LTILVSSHNMLEVEFLC 213 (256)
T ss_dssp CEEEEEECCHHHHTTTC
T ss_pred CEEEEEcCCHHHHHHHC
Confidence 78999999988777654
No 45
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.06 E-value=3.3e-05 Score=63.13 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=70.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC-----------CC------CeEEEEeCc------CCh--------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS-----------YF------HCHAWVSAN------LDP-------------- 123 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------~F------~~~~wvs~~------~~~-------------- 123 (221)
-.+++|+|+.|+|||||++.+..-..... .. ....++.+. .++
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 116 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGS 116 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCST
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcH
Confidence 47899999999999999999976321100 00 112334111 111
Q ss_pred --HHHHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCC------ceEEEEEeCCCC---hH---HHHHHhhhcCC
Q 040890 124 --YVILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKN------KRYLIVLEDVLT---NE---VRKYLGEALPD 186 (221)
Q Consensus 124 --~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~------kr~LlVlDdv~~---~~---~~~~l~~~l~~ 186 (221)
.+...++++.++.... .+...+..+.+.+ .+...|-. ++-+|+||.--+ .. ...++...+.
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv-~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~- 194 (266)
T 4g1u_C 117 QDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRV-QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT- 194 (266)
T ss_dssp THHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHH-HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH-HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH-
Confidence 2234455555544221 1112222444444 45555554 888999998652 22 2222222222
Q ss_pred CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 187 RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...|..||++|++.+.+..++ ++++-|
T Consensus 195 ~~~~~tvi~vtHdl~~~~~~~---d~v~vl 221 (266)
T 4g1u_C 195 RQEPLAVCCVLHDLNLAALYA---DRIMLL 221 (266)
T ss_dssp HHSSEEEEEECSCHHHHHHHC---SEEEEE
T ss_pred HcCCCEEEEEEcCHHHHHHhC---CEEEEE
Confidence 123567999999988877654 345544
No 46
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.06 E-value=4.7e-05 Score=63.77 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=37.5
Q ss_pred CCceeeehhhHHHHHHHHhc---------C-CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE---------G-PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.++.++.|.+.+.. + ....+-+.++|++|+|||+||+.+.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45789999988888877632 1 123467889999999999999999983
No 47
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.06 E-value=3.1e-05 Score=66.10 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=73.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC-----------C---------CCeEEEEeCcC------ChHH--------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS-----------Y---------FHCHAWVSANL------DPYV-------- 125 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------~---------F~~~~wvs~~~------~~~~-------- 125 (221)
.-.+++|+|+.|+|||||.+.+..-..... . -....+|.+.+ ++.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 357899999999999999999876321100 0 01234552222 1111
Q ss_pred ----------HHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--C
Q 040890 126 ----------ILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--R 187 (221)
Q Consensus 126 ----------~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~ 187 (221)
...++++.++.... .+...+ .-+...-.+...|..++-+|+||.--+ ...-..+...+.. .
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LS-GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLS-GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSC-HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCC-HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 12334444443211 111111 233334567778888899999998652 2222222222221 1
Q ss_pred CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 188 HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 188 ~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..|..||++|.+-+++..++ ++++-|
T Consensus 212 ~~g~Tii~vTHdl~~~~~~a---Drv~vl 237 (366)
T 3tui_C 212 RLGLTILLITHEMDVVKRIC---DCVAVI 237 (366)
T ss_dssp HSCCEEEEEESCHHHHHHHC---SEEEEE
T ss_pred hCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 24778999999998887765 345544
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.04 E-value=2.2e-05 Score=66.68 Aligned_cols=48 Identities=6% Similarity=-0.111 Sum_probs=38.3
Q ss_pred CCceeeehhhHHHHHHHHhc----------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE----------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.|.+.+.. .......+.++|++|+|||+||+.+.+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999888742 1123567889999999999999999873
No 49
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.04 E-value=2.4e-05 Score=64.27 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCceEEEEEeCCC---ChHH---HHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 151 RKTALHDYLKNKRYLIVLEDVL---TNEV---RKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 151 l~~~l~~~L~~kr~LlVlDdv~---~~~~---~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..-.+...|..++-+|+||.-- +... +-.+...+.. ..|..||++|.+.+.+..++ ++++-|
T Consensus 150 QRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHdl~~~~~~~---drv~~l 217 (275)
T 3gfo_A 150 KRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK-ELGITIIIATHDIDIVPLYC---DNVFVM 217 (275)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHCCEEEEEESCCSSGGGGC---SEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh-hCCCEEEEEecCHHHHHHhC---CEEEEE
Confidence 3446777778888999999864 2222 2222222221 12777999999887776654 445544
No 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.03 E-value=6.1e-05 Score=59.87 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHH---HhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKY---LGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~---l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..++-+|+||.-- |...-.. +...+. ..|..||++|++.+.+. ++ ++++.|.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~-~~---d~v~~l~ 213 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--EGGTSIVMVTHERELAE-LT---HRTLEMK 213 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHT-TS---SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHH-hC---CEEEEEE
Confidence 345667777888899999865 2222222 222232 12678999999988874 32 4566553
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.01 E-value=2.7e-05 Score=63.17 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=69.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC-C---CCeEEEEeCcC------ChH----------------------HHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS-Y---FHCHAWVSANL------DPY----------------------VILD 128 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~---F~~~~wvs~~~------~~~----------------------~~~~ 128 (221)
-.+++|+|+.|+|||||.+.+..-..... . .....++.+.+ ++. +...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 46899999999999999999987321110 0 11233441111 111 1233
Q ss_pred HHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHH---HhhhcCCCCCCeEEEEEcCC
Q 040890 129 NILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKY---LGEALPDRHNGSRVLAMLTS 199 (221)
Q Consensus 129 ~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~---l~~~l~~~~~gs~IivTTR~ 199 (221)
++++.++.... .+...+....+. -.+...|..++-+|+||.--+ ...-.. +...+. ...|..||++|++
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qr-v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~-~~~g~tvi~vtHd 188 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQL-ILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA-QSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHH-HHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH-HTSCCEEEEEESC
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHH-HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HhcCCEEEEEecC
Confidence 44444433211 111111133333 355666667788999998652 222222 222222 1226779999999
Q ss_pred hHHHhhccCCCCceEec
Q 040890 200 NEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 200 ~~va~~~~~~~~~v~~l 216 (221)
.+.+..++ ++++.|
T Consensus 189 ~~~~~~~~---d~v~~l 202 (253)
T 2nq2_C 189 PNQVVAIA---NKTLLL 202 (253)
T ss_dssp HHHHHHHC---SEEEEE
T ss_pred HHHHHHhC---CEEEEE
Confidence 88775543 345544
No 52
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.01 E-value=2.5e-05 Score=62.90 Aligned_cols=127 Identities=16% Similarity=0.077 Sum_probs=66.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCC------------C---CCCCeEEEEeCc------CCh--------------
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYV------------K---SYFHCHAWVSAN------LDP-------------- 123 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~---~~F~~~~wvs~~------~~~-------------- 123 (221)
.. .+++|+|+.|+|||||.+.+..-... . .......++.+. .++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 101 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV 101 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCc
Confidence 45 78999999999999999998752110 0 000112233111 111
Q ss_pred --HHHHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEE
Q 040890 124 --YVILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRV 193 (221)
Q Consensus 124 --~~~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~I 193 (221)
.+-..++++.++.... .+...+..+.+ .-.+...|..++-+|+||.-- |...-..+...+.. ...|..|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq-Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tv 180 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQ-RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHH-HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHHHHcCCHHHhcCChhhCCHHHHH-HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1223344555443221 11112223333 345667777888899999864 22222222222211 1125679
Q ss_pred EEEcCChHHHhhcc
Q 040890 194 LAMLTSNEIFRFCR 207 (221)
Q Consensus 194 ivTTR~~~va~~~~ 207 (221)
|++|++.+.+..++
T Consensus 181 i~vtHd~~~~~~~~ 194 (240)
T 2onk_A 181 LHVTHDLIEAAMLA 194 (240)
T ss_dssp EEEESCHHHHHHHC
T ss_pred EEEeCCHHHHHHhC
Confidence 99999977665543
No 53
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.99 E-value=5.5e-05 Score=59.05 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=50.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcc------hhcccC--CH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSAL------REIMGK--GF 148 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~------~~~~~~--~~ 148 (221)
+.-.++.|+|.+|+||||||..+.. ..-...+|+ ...++...+. .++..++..... ...... +.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 3467899999999999999998876 112356677 2223544433 344333221000 000011 22
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCC
Q 040890 149 RQRKTALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~LlVlDdv~ 172 (221)
......++..+..+.-+||+|.+.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 345556666665457799999875
No 54
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.98 E-value=3.5e-05 Score=60.57 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.-.+++|+|++|+|||||++.+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999875
No 55
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.98 E-value=7.7e-05 Score=63.50 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=73.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------C----CCCeEEEEeCcC------Ch------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------S----YFHCHAWVSANL------DP------------ 123 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~----~F~~~~wvs~~~------~~------------ 123 (221)
-.+++|+|++|+|||||.+.+..-.... . .-....+|.|.+ ++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~ 109 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK 109 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997522110 0 011233442211 11
Q ss_pred ------HHHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---h----HHHHHHhhhcCCC
Q 040890 124 ------YVILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---N----EVRKYLGEALPDR 187 (221)
Q Consensus 124 ------~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~----~~~~~l~~~l~~~ 187 (221)
.+-..++++.++... ..+...+ .-++..-.+.+.|-.++-+|+||.--+ . ..++.|.....
T Consensus 110 ~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LS-GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~-- 186 (359)
T 3fvq_A 110 GRTAQERQRIEAMLELTGISELAGRYPHELS-GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR-- 186 (359)
T ss_dssp CCSHHHHHHHHHHHHHHTCGGGTTSCGGGSC-HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHcCCchHhcCChhhCC-HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--
Confidence 122345555554422 1122222 233334457777778888999997642 2 22233333322
Q ss_pred CCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 188 HNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 188 ~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
..|..||++|.+.+.+..++ ++++-|
T Consensus 187 ~~g~tvi~vTHd~~ea~~~a---Dri~vl 212 (359)
T 3fvq_A 187 ANGKSAVFVSHDREEALQYA---DRIAVM 212 (359)
T ss_dssp HTTCEEEEECCCHHHHHHHC---SEEEEE
T ss_pred hCCCEEEEEeCCHHHHHHHC---CEEEEE
Confidence 34778999999988887764 455544
No 56
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.97 E-value=7.2e-05 Score=59.91 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEecc
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTLI 217 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l~ 217 (221)
.-.+...|..++-+|+||.-- |...-..+...+.. ...|..||++|++.+++..| ++++.|+
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~----d~i~~l~ 219 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG----ERIIYLK 219 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS----SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC----CEEEEEE
Confidence 345667777788899999865 22222222222221 12377899999999987543 4555543
No 57
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=3.5e-05 Score=63.34 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=38.3
Q ss_pred CCCceeeehhhHHHHHHHHhcC----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 56 SKERCVMLLEDLKELLNQLIEG----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|.+..++.|.+++... ......+.++|++|+||||||+.+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3567999999999998887431 11246788999999999999999988
No 58
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.97 E-value=4e-06 Score=63.79 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCC---hH----------------HHHHHhhhcCC-CCCCeEEEEEcCChHHHhhcc
Q 040890 150 QRKTALHDYLKNKRYLIVLEDVLT---NE----------------VRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 150 ~l~~~l~~~L~~kr~LlVlDdv~~---~~----------------~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~ 207 (221)
...-.+...+..+.-+|+||.-.+ .. ....+...+.. ...|..+|++|++.+.+..+.
T Consensus 89 ~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 89 KPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred HHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 334467788888999999997642 12 33455555543 123778999999988887654
No 59
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.96 E-value=4.5e-05 Score=61.31 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999976
No 60
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.96 E-value=2.2e-05 Score=66.76 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=37.7
Q ss_pred CCCceeeehhhHHHHHHHHhc----------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIE----------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.+..++.|.+.+.. ......-+.++|++|+|||+||+.+.+.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 346799999999999887732 1122345778999999999999999983
No 61
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=2.5e-05 Score=65.75 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=36.6
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|.+..++.|...+..+. ...+.++|+.|+||||+|+.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3567898888888888887754 22378999999999999999877
No 62
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=2.4e-05 Score=61.53 Aligned_cols=118 Identities=9% Similarity=-0.033 Sum_probs=62.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcch------------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALR------------------ 141 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~------------------ 141 (221)
.-.++.|+|++|+|||||++.+..... ..-...+|++.......+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 347899999999999999998875211 11123456644445555444433 332211100
Q ss_pred hcccC-CHHHHHHHHHHHh---CCceEEEEEeCCC-----ChHHHHHHhhhcCC--CCCCeEEEEEcCCh
Q 040890 142 EIMGK-GFRQRKTALHDYL---KNKRYLIVLEDVL-----TNEVRKYLGEALPD--RHNGSRVLAMLTSN 200 (221)
Q Consensus 142 ~~~~~-~~~~l~~~l~~~L---~~kr~LlVlDdv~-----~~~~~~~l~~~l~~--~~~gs~IivTTR~~ 200 (221)
..... +..++...+...+ +-+..+||+|... +......+...+.. ...|..||++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00011 4455555555544 2233499999875 33223333222221 13478899999876
No 63
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.95 E-value=0.00012 Score=61.51 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCC---CC-----------------CCCeEEEE-eCcCC
Q 040890 64 LEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYV---KS-----------------YFHCHAWV-SANLD 122 (221)
Q Consensus 64 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~-----------------~F~~~~wv-s~~~~ 122 (221)
++..+.|...+..+. -...+.++|+.|+|||++|+.+.+...- .. +++ ..++ ...
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 455666777666543 3456889999999999999887653111 00 111 1222 110
Q ss_pred hHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHHh-----CCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEE
Q 040890 123 PYVILDNILKIMMPQSALREIMGKGFRQRKTALHDYL-----KNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLA 195 (221)
Q Consensus 123 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~Iiv 195 (221)
. ......+++.+ +.+.+ .+++-++|+|++. +.+..+.|...+.....++.+|+
T Consensus 84 ----------------~---~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 84 ----------------G---KNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp ----------------T---CSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ----------------c---CCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 00002222222 22222 3567899999997 45667777777765556777777
Q ss_pred EcCCh
Q 040890 196 MLTSN 200 (221)
Q Consensus 196 TTR~~ 200 (221)
+|.+.
T Consensus 144 ~t~~~ 148 (334)
T 1a5t_A 144 ATREP 148 (334)
T ss_dssp EESCG
T ss_pred EeCCh
Confidence 77654
No 64
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=4.5e-05 Score=61.44 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=35.3
Q ss_pred CCCceeeehhhHHHHHHHHh---cC-------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLI---EG-------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.+..++.+.+.+. .. .....-+.|+|++|+||||||+.+.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34678999888877766542 21 012344789999999999999999873
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.94 E-value=5e-06 Score=62.04 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....+.|+|+.|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999874
No 66
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.93 E-value=9.7e-05 Score=60.23 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|..++-+|+||.--+ .. ...++...+. ..|..||++|.+.+.+..++ ++++.|
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~~~---d~v~~l 232 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFAREVG---DRVLFM 232 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHHhC---CEEEEE
Confidence 3356677777888999998652 22 2222222332 22778999999988776654 345444
No 67
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=9e-05 Score=61.72 Aligned_cols=132 Identities=8% Similarity=-0.062 Sum_probs=75.4
Q ss_pred ehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCc-CCCCCCCeEEEE-eCc-CChHHHHHHHHHHhccCCc
Q 040890 63 LLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSD-YVKSYFHCHAWV-SAN-LDPYVILDNILKIMMPQSA 139 (221)
Q Consensus 63 ~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv-s~~-~~~~~~~~~il~~l~~~~~ 139 (221)
-++.++.|...+..+. .....++|+.|+||||+|..+.+.. ..........++ ... ..-.+..+++...+....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p- 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP- 78 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC-
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc-
Confidence 3455667777776654 6788899999999999999887621 111112223444 211 111222333444332211
Q ss_pred chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcCCh-HHHhhccCCCCceEec
Q 040890 140 LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLTSN-EIFRFCRLDNDLMFTL 216 (221)
Q Consensus 140 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR~~-~va~~~~~~~~~v~~l 216 (221)
..+++-++|+|++. +....+.|...+....+.+.+|++|.+. .+...+.+ - ++++
T Consensus 79 -------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f 136 (305)
T 2gno_A 79 -------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS--R-VFRV 136 (305)
T ss_dssp -------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT--T-SEEE
T ss_pred -------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc--e-eEeC
Confidence 12456789999987 5667777877776555677777776543 34333332 1 5555
Q ss_pred ccC
Q 040890 217 ILF 219 (221)
Q Consensus 217 ~~~ 219 (221)
.+.
T Consensus 137 ~~l 139 (305)
T 2gno_A 137 VVN 139 (305)
T ss_dssp ECC
T ss_pred CCC
Confidence 544
No 68
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.92 E-value=6.9e-05 Score=63.73 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=71.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------CCCCeEEEEeCc------CChHH--------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------SYFHCHAWVSAN------LDPYV-------------- 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wvs~~------~~~~~-------------- 125 (221)
-.+++|+|+.|+|||||.+.+..-.... ..-....+|.+. .++.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~ 120 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD 120 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999987632110 001123455221 12211
Q ss_pred ----HHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcCCCCCCe
Q 040890 126 ----ILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALPDRHNGS 191 (221)
Q Consensus 126 ----~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~~~~~gs 191 (221)
-..++++.++... ..+...+.... ..-.|...|-.++-+|+||.--+ .. .++.|.. +. ...|.
T Consensus 121 ~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~-QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~-~~~g~ 197 (355)
T 1z47_A 121 EMDARVRELLRFMRLESYANRFPHELSGGQQ-QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ-VH-DEMGV 197 (355)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH-HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHH-HH-HHHTC
T ss_pred HHHHHHHHHHHHcCChhHhcCCcccCCHHHH-HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HH-HhcCC
Confidence 2233444443321 11222222333 34456777778888999998642 22 2233322 21 12366
Q ss_pred EEEEEcCChHHHhhccCCCCceEec
Q 040890 192 RVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 192 ~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.||++|.+.+.+..++ ++++-|
T Consensus 198 tvi~vTHd~~~a~~~a---dri~vl 219 (355)
T 1z47_A 198 TSVFVTHDQEEALEVA---DRVLVL 219 (355)
T ss_dssp EEEEECSCHHHHHHHC---SEEEEE
T ss_pred EEEEECCCHHHHHHhC---CEEEEE
Confidence 7999999988877664 345444
No 69
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.91 E-value=0.00027 Score=56.27 Aligned_cols=131 Identities=14% Similarity=0.054 Sum_probs=69.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC---CC-CeEEEEeCcC-----ChHHH-----------HHHHHHHhccCC--
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YF-HCHAWVSANL-----DPYVI-----------LDNILKIMMPQS-- 138 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F-~~~~wvs~~~-----~~~~~-----------~~~il~~l~~~~-- 138 (221)
-.+++|+|+.|+|||||.+.+..-..... .| ....|+++.+ ++.+. ...++.......
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 113 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI 113 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence 46899999999999999999987322111 01 1233452221 11111 112222211100
Q ss_pred -cch-----------hcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhc-CCCCCCeEEEEEcCChHH
Q 040890 139 -ALR-----------EIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEAL-PDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 139 -~~~-----------~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l-~~~~~gs~IivTTR~~~v 202 (221)
..+ ...+....+. -.+...|-.++-+++||.-- +...-..+...+ .....|..||++|++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~LSgGqkqr-v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 114 SKFAEKDNIVLGEGGITLSGGQRAR-ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp TTSTTGGGSCBCTTCTTSCHHHHHH-HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HhCcccccccccCCCCcCCHHHHHH-HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 000 0111133333 34566666777899999875 344444554432 222346789999999887
Q ss_pred HhhccCCCCceEec
Q 040890 203 FRFCRLDNDLMFTL 216 (221)
Q Consensus 203 a~~~~~~~~~v~~l 216 (221)
+..| ++++.|
T Consensus 193 ~~~~----d~v~~l 202 (229)
T 2pze_A 193 LKKA----DKILIL 202 (229)
T ss_dssp HHHC----SEEEEE
T ss_pred HHhC----CEEEEE
Confidence 7653 345544
No 70
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=5.7e-05 Score=66.11 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=37.6
Q ss_pred CCceeeehhhHHHHHHHHhc----C------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE----G------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~----~------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.|.+.+.. . ....+-+.++|++|+|||+||+.+.+.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999887731 0 123467889999999999999999983
No 71
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.90 E-value=6.4e-06 Score=68.06 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=36.7
Q ss_pred CceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 35789888888888877542 112357899999999999999998873
No 72
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.89 E-value=0.00016 Score=58.95 Aligned_cols=129 Identities=9% Similarity=0.065 Sum_probs=68.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC--------------CCCeEE-EEeCcC----ChH--------------HHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS--------------YFHCHA-WVSANL----DPY--------------VIL 127 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------~F~~~~-wvs~~~----~~~--------------~~~ 127 (221)
-.+++|+|+.|+|||||.+.+..-. ... ...... ++.+.+ ++. +..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 4689999999999999999998632 100 011233 442222 211 123
Q ss_pred HHHHHHhccC-Ccc---hhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 128 DNILKIMMPQ-SAL---REIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 128 ~~il~~l~~~-~~~---~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
.++++.++.. ... +...+..+.+. -.+...|..++-+|+||.-- +...-..+...+..-.. .||++|++.
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqR-v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~ 185 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVL-VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHEL 185 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHH-HHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHH-HHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCH
Confidence 3445555443 211 11111133333 35666676778899999865 22222333222221112 699999997
Q ss_pred HHHhhccCCCC-ceEec
Q 040890 201 EIFRFCRLDND-LMFTL 216 (221)
Q Consensus 201 ~va~~~~~~~~-~v~~l 216 (221)
+.+..++ + +++.|
T Consensus 186 ~~~~~~~---d~~i~~l 199 (263)
T 2pjz_A 186 DMLNLYK---EYKAYFL 199 (263)
T ss_dssp GGGGGCT---TSEEEEE
T ss_pred HHHHHhc---CceEEEE
Confidence 7665553 3 45554
No 73
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.88 E-value=7.5e-05 Score=63.60 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=71.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------CCCCeEEEEeCcC------ChH---------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------SYFHCHAWVSANL------DPY--------------- 124 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wvs~~~------~~~--------------- 124 (221)
-.+++|+|++|+|||||.+.+..-.... ..-....+|.+.+ ++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD 108 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999997632110 0011234452211 111
Q ss_pred ---HHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcCCCCCCe
Q 040890 125 ---VILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALPDRHNGS 191 (221)
Q Consensus 125 ---~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~~~~~gs 191 (221)
+-..++++.++... ..+...+... +..-.+...|-.++-+|+||.--+ .. .++.|.. +. ...|.
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq-~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~-~~~g~ 185 (359)
T 2yyz_A 109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQ-QQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH-LQ-QELGI 185 (359)
T ss_dssp HTTHHHHHHHHHTTCGGGTTSCGGGSCHHH-HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH-HH-HHHCC
T ss_pred HHHHHHHHHHHHcCCchHhcCChhhCCHHH-HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH-HH-HhcCC
Confidence 12344555554421 1122222233 334457777778888999998642 22 2222322 21 12366
Q ss_pred EEEEEcCChHHHhhccCCCCceEec
Q 040890 192 RVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 192 ~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.||++|++.+.+..++ ++++-|
T Consensus 186 tvi~vTHd~~~~~~~a---dri~vl 207 (359)
T 2yyz_A 186 TSVYVTHDQAEAMTMA---SRIAVF 207 (359)
T ss_dssp EEEEEESCHHHHHHHC---SEEEEE
T ss_pred EEEEEcCCHHHHHHhC---CEEEEE
Confidence 7999999988777664 345444
No 74
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.88 E-value=5.8e-05 Score=64.73 Aligned_cols=132 Identities=12% Similarity=0.126 Sum_probs=70.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------CCCCeEEEEeCcC------ChH---------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------SYFHCHAWVSANL------DPY--------------- 124 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wvs~~~------~~~--------------- 124 (221)
-.+++|+|++|+|||||.+.+..-.... ..-....+|.|++ ++.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~ 108 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE 108 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999997632110 0011234442221 211
Q ss_pred ---HHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEE
Q 040890 125 ---VILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRV 193 (221)
Q Consensus 125 ---~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~I 193 (221)
+-..++++.++... ..+...+....+. -.|...|..+.-+|+||.--+ ...-..+...+.. ...|..|
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQR-VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~ti 187 (381)
T 3rlf_A 109 VINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR-VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187 (381)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHH-HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHcCCchhhcCChhHCCHHHHHH-HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 12334444444321 1122222233333 356666667778999997642 2222222222211 1236789
Q ss_pred EEEcCChHHHhhccCCCCceEec
Q 040890 194 LAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 194 ivTTR~~~va~~~~~~~~~v~~l 216 (221)
|++|.+.+.+..++ +++.-|
T Consensus 188 i~vTHd~~ea~~~a---Dri~vl 207 (381)
T 3rlf_A 188 IYVTHDQVEAMTLA---DKIVVL 207 (381)
T ss_dssp EEECSCHHHHHHHC---SEEEEE
T ss_pred EEEECCHHHHHHhC---CEEEEE
Confidence 99999988777764 445444
No 75
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.88 E-value=6.6e-05 Score=60.71 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||.+.+..-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998863
No 76
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.87 E-value=8.8e-05 Score=63.24 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=70.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------CCCCeEEEEeCcC------ChHH--------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------SYFHCHAWVSANL------DPYV-------------- 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wvs~~~------~~~~-------------- 125 (221)
-.+++|+|+.|+|||||.+.+..-.... ..-....+|.+.+ ++.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~ 108 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE 108 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999987632110 0011234552221 2211
Q ss_pred ----HHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChH----HHHHHhhhcCCCCCCe
Q 040890 126 ----ILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNE----VRKYLGEALPDRHNGS 191 (221)
Q Consensus 126 ----~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~----~~~~l~~~l~~~~~gs 191 (221)
-..++++.++.... .+...+... +..-.+...|-.++-+|+||.-- |.. .++.|.. +. ...|.
T Consensus 109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq-~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~-~~~g~ 185 (362)
T 2it1_A 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQ-QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQ-KELGI 185 (362)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCCGGGSCHHH-HHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH-HH-HHHTC
T ss_pred HHHHHHHHHHHHcCCchHhhCChhhCCHHH-HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH-HH-HhCCC
Confidence 12334444443221 122222233 33445777777888899999754 222 2222322 21 12266
Q ss_pred EEEEEcCChHHHhhccCCCCceEec
Q 040890 192 RVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 192 ~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.||++|++.+.+..++ ++++-|
T Consensus 186 tvi~vTHd~~~a~~~a---dri~vl 207 (362)
T 2it1_A 186 TTVYVTHDQAEALAMA---DRIAVI 207 (362)
T ss_dssp EEEEEESCHHHHHHHC---SEEEEE
T ss_pred EEEEECCCHHHHHHhC---CEEEEE
Confidence 7999999988776664 344444
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.86 E-value=8.9e-05 Score=61.62 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.9
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|....+..+.+.+..-.....-+.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999998887652223445679999999999999999874
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.85 E-value=9.9e-05 Score=68.66 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=37.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-..++|++.+++.+.+.|.... ..-+.++|++|+|||+||+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999987643 34567899999999999998876
No 79
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.85 E-value=9.4e-05 Score=60.24 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||.+.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999876
No 80
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.85 E-value=8.7e-05 Score=63.52 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=71.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCC---------------CCCCeEEEEeCcC------Ch---------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------SYFHCHAWVSANL------DP--------------- 123 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------~~F~~~~wvs~~~------~~--------------- 123 (221)
.-.+++|+|+.|+|||||.+.+..-.... ..-....+|.+.+ ++
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 35789999999999999999987532110 0001123441111 11
Q ss_pred ---HHHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeE
Q 040890 124 ---YVILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSR 192 (221)
Q Consensus 124 ---~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~ 192 (221)
.+-..++++.++... ..+...+....+. -.+...|..++-+|+||.--+ ...-..+...+.. ...|..
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR-valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 194 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR-VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHH-HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH-HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 122345555554421 1222333333333 346677778888999997642 2222222222211 122667
Q ss_pred EEEEcCChHHHhhccCCCCceEec
Q 040890 193 VLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 193 IivTTR~~~va~~~~~~~~~v~~l 216 (221)
||++|++.+.+..++ ++++-|
T Consensus 195 vi~vTHd~~~a~~~a---dri~vl 215 (372)
T 1v43_A 195 TIYVTHDQVEAMTMG---DRIAVM 215 (372)
T ss_dssp EEEEESCHHHHHHHC---SEEEEE
T ss_pred EEEEeCCHHHHHHhC---CEEEEE
Confidence 999999988776664 345444
No 81
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.82 E-value=0.00011 Score=62.28 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=68.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC---CC------------CeEEEEeCcC------ChHH--------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YF------------HCHAWVSANL------DPYV-------------- 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F------------~~~~wvs~~~------~~~~-------------- 125 (221)
-.+++|+|+.|+|||||.+.+..-..... .| ....+|.+.+ ++.+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~ 105 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP 105 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH
Confidence 47899999999999999999986321100 00 0123442221 2211
Q ss_pred -HHHHHHHHhccCCc---chhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcCCCCCCeEEE
Q 040890 126 -ILDNILKIMMPQSA---LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALPDRHNGSRVL 194 (221)
Q Consensus 126 -~~~~il~~l~~~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~~~~~gs~Ii 194 (221)
-..++++.++.... .+...+... +..-.+...|-.++-+|+||.--+ .. .++.|.. +. ...|..||
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~~LSgGq-~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~-l~-~~~g~tii 182 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPLTLSGGE-QQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV-LH-KKNKLTVL 182 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGGGSCHHH-HHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH-HH-HHTTCEEE
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHH-HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH-HH-HhcCCEEE
Confidence 22344554443221 122222233 334467777888888999998642 22 2222322 21 12367799
Q ss_pred EEcCChHHHhhcc
Q 040890 195 AMLTSNEIFRFCR 207 (221)
Q Consensus 195 vTTR~~~va~~~~ 207 (221)
++|++.+.+..++
T Consensus 183 ~vTHd~~~~~~~a 195 (348)
T 3d31_A 183 HITHDQTEARIMA 195 (348)
T ss_dssp EEESCHHHHHHHC
T ss_pred EEeCCHHHHHHhC
Confidence 9999988776654
No 82
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.81 E-value=6.1e-05 Score=59.55 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=66.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC-----------CC-CeEEEEeCcC------ChHH----------------H
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS-----------YF-HCHAWVSANL------DPYV----------------I 126 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------~F-~~~~wvs~~~------~~~~----------------~ 126 (221)
-.+++|+|+.|+|||||++.+..-..... .+ ....++.+.+ ++.+ -
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 114 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE 114 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHH
Confidence 46789999999999999999986321100 01 1234552211 2211 2
Q ss_pred HHHHHHHhccCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 127 LDNILKIMMPQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 127 ~~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
..++++.++.... ..... +.-+...-.+...|..++-+|+||.-- ......++...+. ..|..||++|.
T Consensus 115 ~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tiiivtH 191 (214)
T 1sgw_A 115 IMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSR 191 (214)
T ss_dssp HHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEES
T ss_pred HHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeC
Confidence 2334444433221 11111 122333345667777788899999754 2233333333332 12567899998
Q ss_pred ChHHHhhcc
Q 040890 199 SNEIFRFCR 207 (221)
Q Consensus 199 ~~~va~~~~ 207 (221)
+.+.+..++
T Consensus 192 d~~~~~~~~ 200 (214)
T 1sgw_A 192 EELSYCDVN 200 (214)
T ss_dssp SCCTTSSEE
T ss_pred CHHHHHHhC
Confidence 877665543
No 83
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.81 E-value=0.00014 Score=62.22 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=70.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC---------------------CCCCeEEEEeCcC------ChHH--------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK---------------------SYFHCHAWVSANL------DPYV-------- 125 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~wvs~~~------~~~~-------- 125 (221)
-.+++|+|+.|+|||||.+.+..-.... ..-....+|.+.+ ++.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 108 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 4689999999999999999987532110 0011234552221 2211
Q ss_pred ----------HHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hH----HHHHHhhhcC
Q 040890 126 ----------ILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NE----VRKYLGEALP 185 (221)
Q Consensus 126 ----------~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~----~~~~l~~~l~ 185 (221)
-..++++.++... ..+...+....+ .-.+...|..++-+|+||.--+ .. .++.|.. +.
T Consensus 109 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q-RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~ 186 (372)
T 1g29_1 109 RKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ-RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQ 186 (372)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH-HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH-HH
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHH-HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH-HH
Confidence 1233444443321 112222223333 3456677777888999997642 22 2222322 21
Q ss_pred CCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 186 DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 186 ~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...|..||++|++.+.+..++ ++++-|
T Consensus 187 -~~~g~tvi~vTHd~~~a~~~a---dri~vl 213 (372)
T 1g29_1 187 -RQLGVTTIYVTHDQVEAMTMG---DRIAVM 213 (372)
T ss_dssp -HHHTCEEEEEESCHHHHHHHC---SEEEEE
T ss_pred -HhcCCEEEEECCCHHHHHHhC---CEEEEE
Confidence 123667999999988877664 345444
No 84
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.81 E-value=0.00015 Score=58.10 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=36.7
Q ss_pred HHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcC---CCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 154 ALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALP---DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 154 ~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~---~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+...|-.++-+|+||.-- +...-..+...+. ....|..||++|.+.+.+..| ++++.|
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~----d~v~~l 201 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV----DVIIVM 201 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGS----SEEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhC----CEEEEE
Confidence 4556666677789999875 3344444544442 222477899999988776543 345544
No 85
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.81 E-value=0.00034 Score=57.15 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.+...|-.++-+|+||.-- |...-..+...+.. ...|..||++|.+.+.+..| ++++.|
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~----d~v~~l 229 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA----HHILFL 229 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTC----SEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhC----CEEEEE
Confidence 335666777788899999865 23322333322221 12377899999998877643 455555
No 86
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.81 E-value=3.9e-05 Score=68.03 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=37.3
Q ss_pred CceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|.+..++.|.+++... .....-+.|+|++|+|||+||+.+.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998887531 23345688999999999999999987
No 87
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.81 E-value=3.8e-05 Score=65.37 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=68.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccC-Ccchh-cccCCHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQ-SALRE-IMGKGFRQRKTALHD 157 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~-~~~~~-~~~~~~~~l~~~l~~ 157 (221)
..+++|+|+.|+|||||.+.+... +.......++. ..+.... +... ...++ ....+.....+.++.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhh---------hhccccceeeeeeccccCCHHHHHHH
Confidence 359999999999999999988762 22111223333 2221110 0000 00000 000022234458889
Q ss_pred HhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 158 YLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
.|...+=+|++|...+.+.++.+.... ..|..||+||...+.+..+
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence 999999999999999887777765543 2366799999988877554
No 88
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.80 E-value=0.00013 Score=62.07 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=71.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCC--------------------CCCCCeEEEEeCcC------Ch-----------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYV--------------------KSYFHCHAWVSANL------DP----------- 123 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--------------------~~~F~~~~wvs~~~------~~----------- 123 (221)
-.+++|+|+.|+|||||.+.+..-... ...-....+|.+.+ ++
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 110 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998752111 00011233452221 11
Q ss_pred -------HHHHHHHHHHhccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---Ch----HHHHHHhhhcCC
Q 040890 124 -------YVILDNILKIMMPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TN----EVRKYLGEALPD 186 (221)
Q Consensus 124 -------~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~----~~~~~l~~~l~~ 186 (221)
.+-..++++.++... ..+...+.... ..-.+...|..++-+|+||.-- |. ..++.|.. +.
T Consensus 111 ~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~-QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~-l~- 187 (353)
T 1oxx_K 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ-QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQ- 187 (353)
T ss_dssp SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH-HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH-HH-
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH-HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH-HH-
Confidence 122344555554321 11222222333 3446777787888899999754 22 22333322 21
Q ss_pred CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 187 RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 187 ~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
...|..||++|++.+.+..++ ++++-|
T Consensus 188 ~~~g~tvi~vTHd~~~~~~~a---dri~vl 214 (353)
T 1oxx_K 188 SRLGVTLLVVSHDPADIFAIA---DRVGVL 214 (353)
T ss_dssp HHHCCEEEEEESCHHHHHHHC---SEEEEE
T ss_pred HhcCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 123667999999988777664 345444
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.79 E-value=3.9e-05 Score=61.10 Aligned_cols=120 Identities=10% Similarity=0.009 Sum_probs=59.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcc-------------hh----
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSAL-------------RE---- 142 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~-------------~~---- 142 (221)
.-.+++|+|++|+|||||++.+........ -...+++........+. .....++..... +.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLR-REMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHH-HHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEccCCHHHHH-HHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 458899999999999999998773101011 12344552222222222 222222211000 00
Q ss_pred -------cccC-CHHHHHHHHHHHh-CCceEEEEEeCCCC-------hH----HHHHHhhhcCCCCCCeEEEEEcCChHH
Q 040890 143 -------IMGK-GFRQRKTALHDYL-KNKRYLIVLEDVLT-------NE----VRKYLGEALPDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 143 -------~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~-------~~----~~~~l~~~l~~~~~gs~IivTTR~~~v 202 (221)
.... +..++...+...+ ..+.-+++||..-. .. .+..+...+. ..|..||++|++.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~--~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL--EMGVTTILTTEAPDP 184 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH--HHCCEEEEEECCC--
T ss_pred ccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH--HCCCeEEEEECCCCC
Confidence 0111 3445555555555 35667899997531 11 1333333332 347889999998666
Q ss_pred H
Q 040890 203 F 203 (221)
Q Consensus 203 a 203 (221)
+
T Consensus 185 ~ 185 (251)
T 2ehv_A 185 Q 185 (251)
T ss_dssp -
T ss_pred C
Confidence 5
No 90
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=0.00013 Score=58.87 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 91
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.77 E-value=0.00024 Score=52.92 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=48.2
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcch-----hcccC-CHHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALR-----EIMGK-GFRQRKTAL 155 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~-----~~~~~-~~~~l~~~l 155 (221)
.+|.|.|++|+||||+|+.+ . +. ... ++ +..++++..+..-+...... ...+. ........+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~--~~----g~~-~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K--ER----GAK-VI----VMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLC 69 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H--HT----TCE-EE----EHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-H--HC----CCc-EE----EHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHH
Confidence 47899999999999999998 4 22 111 22 22344444333321000000 00000 111233445
Q ss_pred HHHh-CCceEEEEEeCCCChHHHHHHhhhcC
Q 040890 156 HDYL-KNKRYLIVLEDVLTNEVRKYLGEALP 185 (221)
Q Consensus 156 ~~~L-~~kr~LlVlDdv~~~~~~~~l~~~l~ 185 (221)
.+.+ ......+|+|.+.+...++.+...+.
T Consensus 70 ~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 70 VEELGTSNHDLVVFDGVRSLAEVEEFKRLLG 100 (179)
T ss_dssp HHHHCSCCCSCEEEECCCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC
Confidence 5555 23445688899977777777766553
No 92
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00032 Score=61.22 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=35.8
Q ss_pred CceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.+++|.+.+.. +-..++=|.++|++|+|||+||+++.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4567888888888776632 123456678999999999999999998
No 93
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.75 E-value=0.00011 Score=59.51 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999876
No 94
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.74 E-value=0.0002 Score=58.35 Aligned_cols=132 Identities=12% Similarity=0.107 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCC-------------CC-CeEEEEeCc----C---ChH---------------
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKS-------------YF-HCHAWVSAN----L---DPY--------------- 124 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------~F-~~~~wvs~~----~---~~~--------------- 124 (221)
-.+++|+|+.|+|||||++.+..-..... .+ ....++.+. + ++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~ 112 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD 112 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHH
Confidence 47899999999999999999876321100 00 123455221 1 111
Q ss_pred --HHHHHHHHHhccC--C---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEE
Q 040890 125 --VILDNILKIMMPQ--S---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRV 193 (221)
Q Consensus 125 --~~~~~il~~l~~~--~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~I 193 (221)
+...++++.++.. . ..+...+....+ .-.+...|..++-+|+||.-- |...-..+...+.. ...|..|
T Consensus 113 ~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~q-Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ti 191 (266)
T 2yz2_A 113 PVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR-RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191 (266)
T ss_dssp SHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHH-HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCcCCcccccCChhhCCHHHHH-HHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 1223344444332 1 111111112333 345667777888899999865 22222222222211 1126779
Q ss_pred EEEcCChHHHhhccCCCCceEec
Q 040890 194 LAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 194 ivTTR~~~va~~~~~~~~~v~~l 216 (221)
|++|++.+.+..++ ++++.|
T Consensus 192 i~vtHd~~~~~~~~---d~v~~l 211 (266)
T 2yz2_A 192 ILISHDIETVINHV---DRVVVL 211 (266)
T ss_dssp EEECSCCTTTGGGC---SEEEEE
T ss_pred EEEeCCHHHHHHhC---CEEEEE
Confidence 99999977766543 345544
No 95
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.72 E-value=0.00021 Score=62.66 Aligned_cols=49 Identities=10% Similarity=-0.094 Sum_probs=36.8
Q ss_pred CCCceeeehhhHHHHHHH---HhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQ---LIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~---L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....++|.++.++.+..+ +..+....+-+.++|++|+|||+||+.+.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 347899999887765544 4444333456789999999999999999884
No 96
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=9.2e-05 Score=65.38 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=35.1
Q ss_pred CCceeeehhhHHHHHHHHhc---C-------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE---G-------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.++.++++.+.+.. . ....+-+.++|++|+|||+||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789998887777766432 1 111234779999999999999999883
No 97
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=5.6e-05 Score=71.38 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=37.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.++|+++++..+.+.|.... ..-+.++|++|+||||||+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999997743 33467899999999999999876
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.67 E-value=5.1e-05 Score=63.26 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=27.9
Q ss_pred hHHHHHHHHhcCCC-CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 66 DLKELLNQLIEGPP-QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 66 ~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+.+.+++..... ...-+.++|+.|+|||+||..+.+.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44455566654322 2467889999999999999999874
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.65 E-value=0.00076 Score=55.70 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=66.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCC---CCC-eEEEEeCcC-----ChHHHH----------HHHHHHhccCC--
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---YFH-CHAWVSANL-----DPYVIL----------DNILKIMMPQS-- 138 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~-~~~wvs~~~-----~~~~~~----------~~il~~l~~~~-- 138 (221)
.-.+++|+|+.|+|||||.+.+..-..... .|+ ...++.+.+ ++.+.+ ..++.......
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l 142 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDI 142 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHH
Confidence 357899999999999999999987322110 121 234552221 111111 11111111100
Q ss_pred -cch-----------hcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhc-CCCCCCeEEEEEcCChHH
Q 040890 139 -ALR-----------EIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEAL-PDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 139 -~~~-----------~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l-~~~~~gs~IivTTR~~~v 202 (221)
..+ ...+....+ .-.+...|..++-+++||.-- +...-..+...+ .....|..||++|++.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~Q-Rv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 143 SKFAEKDNIVLGEGGITLSGGQRA-RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp HTSTTGGGCBC----CCCCHHHHH-HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred HhccccccchhcCccCcCCHHHHH-HHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 000 011113333 335566666777899999875 334444454432 222347789999999887
Q ss_pred Hhhc
Q 040890 203 FRFC 206 (221)
Q Consensus 203 a~~~ 206 (221)
+..|
T Consensus 222 ~~~~ 225 (290)
T 2bbs_A 222 LKKA 225 (290)
T ss_dssp HHHS
T ss_pred HHcC
Confidence 7653
No 100
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.64 E-value=0.00017 Score=59.24 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999876
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.61 E-value=0.00022 Score=56.45 Aligned_cols=93 Identities=5% Similarity=-0.026 Sum_probs=51.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCC----CCCeEEEE-eCc-CChHHHHHHHHHHhccCCcc-hhc---ccC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS----YFHCHAWV-SAN-LDPYVILDNILKIMMPQSAL-REI---MGK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv-s~~-~~~~~~~~~il~~l~~~~~~-~~~---~~~-~ 147 (221)
+.-.++.|+|++|+|||||+..+........ .-...+|+ ... +....+ ..+++.++..... ..+ ... +
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 3457899999999999999998876321211 12467788 322 343333 3444444332100 000 011 2
Q ss_pred HH---HHHHHHHHHhC-CceEEEEEeCCC
Q 040890 148 FR---QRKTALHDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 148 ~~---~l~~~l~~~L~-~kr~LlVlDdv~ 172 (221)
.. .+...+.+.+. .+.-+||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 23344555553 467899999876
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.59 E-value=0.00025 Score=63.63 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=71.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC-CC--CC-eEEEEeCc------CChHHHHHHH----------HHHh----cc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK-SY--FH-CHAWVSAN------LDPYVILDNI----------LKIM----MP 136 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~-~~~wvs~~------~~~~~~~~~i----------l~~l----~~ 136 (221)
-.+++|+|+.|+|||||++.++.-.... .. +. ...++++. .++.+.+... +.++ +.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999998742211 11 12 23455222 2333333221 1111 11
Q ss_pred CCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---hHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhccCC
Q 040890 137 QSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---NEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFCRLD 209 (221)
Q Consensus 137 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~~~~ 209 (221)
.......... .-++..-.+...|..+.-+|+||.--+ ...-..+...+.. ...|..||++|.+.+.+..++
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~-- 469 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS-- 469 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC--
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence 1100011111 223334467777888888999997642 2222222222211 123567999999988877665
Q ss_pred CCceEecc
Q 040890 210 NDLMFTLI 217 (221)
Q Consensus 210 ~~~v~~l~ 217 (221)
++++.|.
T Consensus 470 -drv~vl~ 476 (538)
T 1yqt_A 470 -DRLMVFE 476 (538)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEe
Confidence 4565553
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.58 E-value=0.0006 Score=61.99 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=72.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCC-CC--CC-eEEEEeCc------CChHHHH--------------HHHHHHhcc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVK-SY--FH-CHAWVSAN------LDPYVIL--------------DNILKIMMP 136 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~-~~~wvs~~------~~~~~~~--------------~~il~~l~~ 136 (221)
-.+++|+|+.|+|||||++.+..-.... .. +. ...++.+. .++.+.+ .++++.++.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999998742211 11 11 23455222 2333322 223333333
Q ss_pred CCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhccC
Q 040890 137 QSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRL 208 (221)
Q Consensus 137 ~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~ 208 (221)
.......... .-+...-.+...|....-+|+||.--+ .. ....+...+. ...|..||++|++...+..++
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-~~~g~tvi~vsHd~~~~~~~a- 539 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-EKNEKTALVVEHDVLMIDYVS- 539 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHC-
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhC-
Confidence 2111111112 223334456777888888999997542 22 2222222221 123667999999988887664
Q ss_pred CCCceEecc
Q 040890 209 DNDLMFTLI 217 (221)
Q Consensus 209 ~~~~v~~l~ 217 (221)
++++.|.
T Consensus 540 --drv~vl~ 546 (607)
T 3bk7_A 540 --DRLIVFE 546 (607)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEc
Confidence 4555543
No 104
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=0.00046 Score=58.68 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=52.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-.++.|.|++|+||||||.++..... ..=..++|+ ...++.. .++.++...+...-... +.+++.+.+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4568999999999999999988876321 111245778 3333432 44555443221111122 566666666
Q ss_pred HHHhC-CceEEEEEeCCC
Q 040890 156 HDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L~-~kr~LlVlDdv~ 172 (221)
...++ .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 66553 455699999875
No 105
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.56 E-value=0.0012 Score=53.76 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 153 TALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 153 ~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
-.+...|..++-+|+||.-- |...-..+...+.. ...|..||++|.+.+.+..+. .++++.|
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~--~d~v~~l 238 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIK--PDYVHVL 238 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSC--CSEEEEE
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhc--CCEEEEE
Confidence 34556666677899999865 23332333322221 134778999999988776531 1345544
No 106
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.56 E-value=0.00028 Score=56.67 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999875
No 107
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.54 E-value=0.00022 Score=58.83 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....+.++|++|+|||+||+.+.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 108
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0002 Score=65.10 Aligned_cols=132 Identities=7% Similarity=0.034 Sum_probs=71.4
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCC--C-C-eEEEEeCc----C--ChH--------------HHHHHHHHHhccC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSY--F-H-CHAWVSAN----L--DPY--------------VILDNILKIMMPQ 137 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F-~-~~~wvs~~----~--~~~--------------~~~~~il~~l~~~ 137 (221)
.+++|+|+.|+|||||++.+..-...... . . ...++.+. + ++. ....++++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 57999999999999999999873221110 0 1 12333221 1 111 1223334444332
Q ss_pred CcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCC
Q 040890 138 SALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLD 209 (221)
Q Consensus 138 ~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~ 209 (221)
......... .-++..-.+..+|..+.-+|+||.--+ . .....+...+. ...|..||++|++.+.+..++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~-~~~g~tviivtHdl~~~~~~a-- 535 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI-LHNKKTAFIVEHDFIMATYLA-- 535 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHC--
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhC--
Confidence 111111122 233334467788888899999997542 2 22222222221 123667999999988887764
Q ss_pred CCceEecc
Q 040890 210 NDLMFTLI 217 (221)
Q Consensus 210 ~~~v~~l~ 217 (221)
++++.|.
T Consensus 536 -Drvivl~ 542 (608)
T 3j16_B 536 -DKVIVFE 542 (608)
T ss_dssp -SEEEECE
T ss_pred -CEEEEEe
Confidence 4555553
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.52 E-value=7e-05 Score=58.50 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 66 DLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 66 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.++|.+.+........+++|+|++|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544334578999999999999999998876
No 110
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.50 E-value=0.0002 Score=64.22 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=69.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCC---C--CeEEEEeCc------CChHHHHH---------------HHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSY---F--HCHAWVSAN------LDPYVILD---------------NILKIM 134 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F--~~~~wvs~~------~~~~~~~~---------------~il~~l 134 (221)
-.+++|+|+.|+|||||++.++.-...... + ....++++. .++.+.+. ++++.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~ 373 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL 373 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence 468999999999999999999873221110 1 112233221 12222221 111111
Q ss_pred ccCC---cchhcccCCHHHHHHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 135 MPQS---ALREIMGKGFRQRKTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 135 ~~~~---~~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
+... ..+...+ .-+...-.+..+|..+.-+|+||.--+ .. ..-.+...+. ...|..||++|.+.+.+..
T Consensus 374 ~l~~~~~~~~~~LS-GGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~-~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 374 NLHRLLESNVNDLS-GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT-RERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp TGGGCTTSBGGGCC-HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HHTTCEEEEECSCHHHHHH
T ss_pred CCHHHhcCChhhCC-HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHH
Confidence 1111 1111111 223334457777778888999997642 22 2222222222 1236679999999988887
Q ss_pred ccCCCCceEecc
Q 040890 206 CRLDNDLMFTLI 217 (221)
Q Consensus 206 ~~~~~~~v~~l~ 217 (221)
++ ++++.|.
T Consensus 452 ~a---Dri~vl~ 460 (538)
T 3ozx_A 452 IA---DRIIVFK 460 (538)
T ss_dssp HC---SEEEEEE
T ss_pred hC---CEEEEEe
Confidence 65 4555553
No 111
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.47 E-value=0.00014 Score=59.21 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=63.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
.-.+++|+|+.|+|||||++.+... +...+...+++ ..+.... .... ..+... . ....+...+...+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~--~~~~-~~~v~q--~--~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV--FKHK-KSIVNQ--R--EVGEDTKSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSC--CCCS-SSEEEE--E--EBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceee--cCCc-ceeeeH--H--HhCCCHHHHHHHHHHH
Confidence 3579999999999999999988762 22222344544 3221100 0000 000000 0 0000112234567777
Q ss_pred hCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 159 LKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 159 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
|..++-+|++|...+......+.... ..|..|++||.+.+++..|
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~~ 139 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAIDTI 139 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHHHH
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHHHH
Confidence 76677899999997665544443332 2466799999887655443
No 112
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.47 E-value=0.0005 Score=59.14 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|++|+|||||.+.+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 357899999999999999999876
No 113
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.46 E-value=0.0001 Score=64.86 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=37.3
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.++|++.+++.+...|.... ..-+.++|++|+|||+||+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 568999999999999997643 33456899999999999999876
No 114
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=0.00015 Score=56.34 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=32.9
Q ss_pred ehhhHHHHHHHHhcCC-CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 63 LLEDLKELLNQLIEGP-PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 63 ~~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+++.++.|.+.+.... ....+++|+|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566778888887532 3468999999999999999998876
No 115
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0012 Score=59.91 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCCcchhcccC---CHHHHHHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEE
Q 040890 126 ILDNILKIMMPQSALREIMGK---GFRQRKTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAM 196 (221)
Q Consensus 126 ~~~~il~~l~~~~~~~~~~~~---~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivT 196 (221)
...++++.++........... .+.+. -.+...|..+.-+|+||.--+ .. .+..+...+. ..|..||++
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qr-v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~v 277 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEKLSGGELQR-FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICV 277 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTTCCHHHHHH-HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEE
T ss_pred HHHHHHHHcCCcchhCCChHHCCHHHHHH-HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEE
Confidence 344556665543221111222 33333 345566666777899997642 22 2333334443 236679999
Q ss_pred cCChHHHhhccCCCCceEec
Q 040890 197 LTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 197 TR~~~va~~~~~~~~~v~~l 216 (221)
|++.+.+..++ ++++.|
T Consensus 278 tHdl~~~~~~~---drv~vl 294 (608)
T 3j16_B 278 EHDLSVLDYLS---DFVCII 294 (608)
T ss_dssp CSCHHHHHHHC---SEEEEE
T ss_pred eCCHHHHHHhC---CEEEEE
Confidence 99988887764 455544
No 116
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.41 E-value=0.00068 Score=63.39 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=57.0
Q ss_pred CceeeehhhHHHHHHHHh----cC-------CCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHH
Q 040890 58 ERCVMLLEDLKELLNQLI----EG-------PPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVI 126 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~----~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~ 126 (221)
.++.|.++.+++|.+++. .. -..++-|.++|++|+|||+||+.+.+ +...+| +.|+. .+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~----~~- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING----PE- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEH----HH-
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEh----HH-
Confidence 457788888888877653 21 13356788999999999999999998 333332 23311 01
Q ss_pred HHHHHHHhccCCcchhcccC-CHHHHHHHHHHHhCCceEEEEEeCCC
Q 040890 127 LDNILKIMMPQSALREIMGK-GFRQRKTALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 127 ~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L~~kr~LlVlDdv~ 172 (221)
+.... .. ....+...+.......+++|+||++.
T Consensus 274 ---l~sk~----------~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 274 ---IMSKL----------AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---HHSSC----------TTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred ---hhccc----------chHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 11000 11 23334444555556778999999986
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.41 E-value=0.00043 Score=58.69 Aligned_cols=87 Identities=16% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-+++.|.|.+|+||||||.++..... ..=...+|+ ...++.. .++.++...+...-... +.+++.+.+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4468899999999999999988765211 111346777 3333332 24444432111101112 555666656
Q ss_pred HHHhC-CceEEEEEeCCC
Q 040890 156 HDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L~-~kr~LlVlDdv~ 172 (221)
....+ .+.-+||+|.+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 55553 345699999874
No 118
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.41 E-value=0.00092 Score=59.89 Aligned_cols=53 Identities=6% Similarity=0.006 Sum_probs=35.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 152 KTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.-.+...|..+.-+|+||.--+ .. .+..+...+. . |..||++|.+.+.+..++
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~--~-g~tii~vsHdl~~~~~~~ 204 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--K-NKYVIVVDHDLIVLDYLT 204 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC--T-TSEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEEeChHHHHhhC
Confidence 3456677777888999997642 22 2333333443 2 677999999988877765
No 119
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.40 E-value=0.00033 Score=58.31 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 357899999999999999999876
No 120
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00053 Score=59.13 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=35.2
Q ss_pred CceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.+++|.+.+.- +-...+=+.++|++|+|||.||+++.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4567888888888776532 113345577999999999999999998
No 121
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0012 Score=57.23 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=35.4
Q ss_pred CceeeehhhHHHHHHHHhc----C-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE----G-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.+++|.+.+.. . -...+=|.++|++|+|||.||+++.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3567888888888776532 1 13356688999999999999999998
No 122
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.37 E-value=0.0007 Score=55.17 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.++.|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999988764
No 123
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00076 Score=58.67 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=35.9
Q ss_pred CceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.++.|.+.+.. +-...+=+.++|++|+|||+||+++.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4578899888888776632 123355678999999999999999998
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.36 E-value=0.0012 Score=56.24 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-.++.|.|.+|+||||||..+...... .-..++|+ ...++. + .+..++.......-.+. +.+++.+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~--~---~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDP--V---YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCH--H---HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhH--H---HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 34578889999999999999877653111 11356788 333332 2 23444432111000112 566677777
Q ss_pred HHHhCC-ceEEEEEeCCC
Q 040890 156 HDYLKN-KRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L~~-kr~LlVlDdv~ 172 (221)
...++. .--+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 666643 45599999874
No 125
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.35 E-value=0.00087 Score=63.88 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=67.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC-----eEEEEeCc-------CCh-----------HHHHHHHHHHhccC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH-----CHAWVSAN-------LDP-----------YVILDNILKIMMPQ 137 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-----~~~wvs~~-------~~~-----------~~~~~~il~~l~~~ 137 (221)
-.+++|+|+.|+|||||++.+..- .+. .++ ...++.+. .+. .+-..+++..++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 467899999999999999999841 111 111 12333211 111 22334555555542
Q ss_pred Cc----chhcccCCHHHHHHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 138 SA----LREIMGKGFRQRKTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 138 ~~----~~~~~~~~~~~l~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.. .+...+..+.+ .-.|...|-.+.-+|+||.-- +...-..+...+.. .|..||++|++.+.+..++
T Consensus 539 ~~~~~~~~~~LSGGqkQ-RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKM-KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp HHHHHSBGGGCCHHHHH-HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred hhhhcCCcccCCHHHHH-HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 11 11111113333 345566666778899999765 22333333333332 3677999999988877654
No 126
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.35 E-value=0.00026 Score=66.46 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=37.3
Q ss_pred CceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|.+..++.|.+++.. .-.....+.++|++|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999888753 113346688999999999999999988
No 127
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.35 E-value=0.00063 Score=60.94 Aligned_cols=132 Identities=12% Similarity=0.138 Sum_probs=71.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcC--CCC----------CCC----------------eEEEEeCcC---------C
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDY--VKS----------YFH----------------CHAWVSANL---------D 122 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~----------~F~----------------~~~wvs~~~---------~ 122 (221)
.-.+++|+|+.|+|||||++.+..-.. -.. .|. ....+.+.. +
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 357899999999999999999986321 111 010 011221110 1
Q ss_pred hHH---------HHHHHHHHhccCCcchhccc--CCHHHHHHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcC
Q 040890 123 PYV---------ILDNILKIMMPQSALREIMG--KGFRQRKTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALP 185 (221)
Q Consensus 123 ~~~---------~~~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~ 185 (221)
..+ -..+++..++.......... +.-+...-.|...|..+.-+|+||.--+ .. .+..+...+.
T Consensus 126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 205 (538)
T 1yqt_A 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205 (538)
T ss_dssp HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 211 13455565554321111112 2233334456677777888999997652 22 2222233332
Q ss_pred CCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 186 DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 186 ~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
. .|..||++|++.+.+..++ ++++.|
T Consensus 206 ~--~g~tvi~vsHd~~~~~~~~---dri~vl 231 (538)
T 1yqt_A 206 E--EGKSVLVVEHDLAVLDYLS---DIIHVV 231 (538)
T ss_dssp H--TTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred h--cCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 2 3677999999988877764 345544
No 128
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.34 E-value=0.00061 Score=55.96 Aligned_cols=119 Identities=9% Similarity=0.012 Sum_probs=62.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCC-eEEEEeCcCChHHHHHHHHHHhccC---------------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFH-CHAWVSANLDPYVILDNILKIMMPQ--------------------- 137 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wvs~~~~~~~~~~~il~~l~~~--------------------- 137 (221)
.-.+++|.|.+|+|||||+..+....... -. ..+|++...+..++...+.......
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 111 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 111 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 45789999999999999999887632211 12 3455533334444443333321110
Q ss_pred -------Ccc-hhcc-cC-CHHHHHHHHHHH-hCCceEEEEEeCCCC---h-------HHHHHHhhhcCC--CCCCeEEE
Q 040890 138 -------SAL-REIM-GK-GFRQRKTALHDY-LKNKRYLIVLEDVLT---N-------EVRKYLGEALPD--RHNGSRVL 194 (221)
Q Consensus 138 -------~~~-~~~~-~~-~~~~l~~~l~~~-L~~kr~LlVlDdv~~---~-------~~~~~l~~~l~~--~~~gs~Ii 194 (221)
... .... .. ...++...+... +..+.-+||||.... . .....+...|.. ...|..||
T Consensus 112 ~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi 191 (296)
T 1cr0_A 112 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLV 191 (296)
T ss_dssp HHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 000 0001 12 556665555532 456677999998754 1 222233333321 12367899
Q ss_pred EEcCCh
Q 040890 195 AMLTSN 200 (221)
Q Consensus 195 vTTR~~ 200 (221)
++|...
T Consensus 192 ~vsh~~ 197 (296)
T 1cr0_A 192 VICHLK 197 (296)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998874
No 129
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.33 E-value=0.00021 Score=61.18 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccC-Ccchhc-ccCCHHHHHHHHH
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQ-SALREI-MGKGFRQRKTALH 156 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~-~~~~~~-~~~~~~~l~~~l~ 156 (221)
...+++|+|+.|+|||||++.+... +.......+.+ ..+... .+... ...++. ...+...+...++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEY---------VFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCS---------CCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhh---------hhccCceEEEeeecCCCHHHHHHHHH
Confidence 3578999999999999999988762 22111234433 322210 00000 000000 0001112345677
Q ss_pred HHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhh
Q 040890 157 DYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRF 205 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~ 205 (221)
..|...+-+|++|.+.+.+.+..+.... ..|..|+.|+...+++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHHH
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHHH
Confidence 8887788899999998766555443333 246668888887665443
No 130
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0006 Score=59.41 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=36.0
Q ss_pred CceeeehhhHHHHHHHHhc----C-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE----G-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.+++|.+.+.. . -...+=|.++|++|+|||.||+++.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4578899988888776432 1 13456678999999999999999998
No 131
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.00048 Score=64.11 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=36.8
Q ss_pred CceeeehhhHHHHHHHHhcCC-------CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGP-------PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|.+..++.+.+.+.... .....+.++|++|+|||+||+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999988888875311 12336889999999999999998873
No 132
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.32 E-value=0.00014 Score=61.19 Aligned_cols=47 Identities=17% Similarity=0.052 Sum_probs=36.2
Q ss_pred CCceeeehhhHHHHHHHHhcC---CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEG---PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-..++|.+..++.+...+... ......+.++|++|+||||||+.+.+
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 456788887777776666432 22346789999999999999999987
No 133
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.30 E-value=0.0001 Score=58.68 Aligned_cols=109 Identities=10% Similarity=-0.039 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDYL 159 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L 159 (221)
-.++.|+|..|+||||++..+... ...+-...+.+....+.. ....+++.++..... ... ...++.+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~---~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPS---VEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCC---EEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCch-HHHHHHHhcCCCccc---cccCCHHHHHHHHHHHh
Confidence 578899999999999988666552 211111223332222211 112334444322110 111 4455666666666
Q ss_pred CCceE-EEEEeCCC--ChHHHHHHhhhcCCCCCCeEEEEEcC
Q 040890 160 KNKRY-LIVLEDVL--TNEVRKYLGEALPDRHNGSRVLAMLT 198 (221)
Q Consensus 160 ~~kr~-LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IivTTR 198 (221)
.+.++ +|++|.+. +.+..+.+.. +.+ .|..||+|-+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGL 124 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEec
Confidence 55555 99999986 3444444433 222 2788999988
No 134
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.29 E-value=0.00016 Score=60.56 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=42.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-e-CcCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-S-ANLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
.+++.|+|++|+||||||.++... .. ...+|+ . .... +... ..+.+...+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G-~~VlyIs~~~eE~-----------v~~~-------~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LG-GKDKYATVRFGEP-----------LSGY-------NTDFNVFVDDIARA 179 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HH-TTSCCEEEEBSCS-----------STTC-------BCCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CC-CCEEEEEecchhh-----------hhhh-------hcCHHHHHHHHHHH
Confidence 466789999999999999988763 11 123344 2 0111 0000 01556666666777
Q ss_pred hCCceEEEEEeCCC
Q 040890 159 LKNKRYLIVLEDVL 172 (221)
Q Consensus 159 L~~kr~LlVlDdv~ 172 (221)
+...+ +||+|++.
T Consensus 180 l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 180 MLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHCS-EEEEECCT
T ss_pred HhhCC-EEEEeccc
Confidence 75555 99999986
No 135
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.29 E-value=0.0009 Score=55.94 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=53.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCC----CCeEEEE--eCcCChHHHHHHHHHHhccCCcc-hhc---ccC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSY----FHCHAWV--SANLDPYVILDNILKIMMPQSAL-REI---MGK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~-~~~---~~~-~ 147 (221)
+.-.++.|.|.+|+||||||..+......... -..++|+ ...++...+. ++++.++..... ..+ ... +
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 34578999999999999999887653221110 2356788 3335555544 445555432110 000 011 2
Q ss_pred HH---HHHHHHHHHhC--CceEEEEEeCCC
Q 040890 148 FR---QRKTALHDYLK--NKRYLIVLEDVL 172 (221)
Q Consensus 148 ~~---~l~~~l~~~L~--~kr~LlVlDdv~ 172 (221)
.+ ++.+.+...++ .+.-+||+|.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 22 45556666663 467799999986
No 136
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.27 E-value=0.0028 Score=57.25 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999876
No 137
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.25 E-value=0.00092 Score=56.80 Aligned_cols=87 Identities=13% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-.++.|.|.+|+||||||.++...... .-..++|+ ...++.. .+..++.......-.+. +.+++.+.+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 44678999999999999999877653111 11256778 3334432 23444432111000112 455555555
Q ss_pred HHHh-CCceEEEEEeCCC
Q 040890 156 HDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L-~~kr~LlVlDdv~ 172 (221)
.... ..+--+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 5444 2445599999874
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.25 E-value=0.00032 Score=57.94 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 78 PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 78 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998766
No 139
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.25 E-value=0.00015 Score=59.55 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=37.0
Q ss_pred CCceeeehhhHHHHHHHHhcC------------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG------------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|.+..++.|...+... ......+.++|++|+|||+||+.+.+.
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999988877540 112355779999999999999999873
No 140
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00043 Score=60.63 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=35.7
Q ss_pred CceeeehhhHHHHHHHHhc-----------CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIE-----------GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.++.+++|.+.+.. +-...+=|.++|++|+|||.||+++.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 3578888888888776421 113456677999999999999999998
No 141
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.23 E-value=0.00076 Score=56.66 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=62.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eC-cCChHHHHHHHHHHhccCCcchhcccCCHHHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SA-NLDPYVILDNILKIMMPQSALREIMGKGFRQRKTALHDY 158 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 158 (221)
...++|+|+.|+|||||++.+..- +.. -...+.+ .. ..... ... ... .-...........+...
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~--------~~~--~~i-~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFK--------HHK--NYT-QLFFGGNITSADCLKSC 236 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCS--------SCS--SEE-EEECBTTBCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccc--------cch--hEE-EEEeCCChhHHHHHHHH
Confidence 357899999999999999999873 222 2345555 21 11100 000 000 00000111234566777
Q ss_pred hCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhc
Q 040890 159 LKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFC 206 (221)
Q Consensus 159 L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~ 206 (221)
|..++-+|+||...+.+.++.|.. +..+ +..+|+||+...+...|
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~-~~~g--~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNV-LCSG--HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHH-HHTT--CCCEEEEEECSSHHHHH
T ss_pred hhhCCCEEEEcCCChHHHHHHHHH-HhcC--CCEEEEEEcccHHHHHh
Confidence 888888999999988666665543 3322 22378888776655443
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.22 E-value=0.00077 Score=61.27 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=71.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcC--CCC----------CCC---------------e-EEEEeCc---------CC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDY--VKS----------YFH---------------C-HAWVSAN---------LD 122 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~----------~F~---------------~-~~wvs~~---------~~ 122 (221)
.-.+++|+|+.|+|||||++.+..... ... .|. . ...+.+. .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 357899999999999999999886321 111 010 0 1122111 01
Q ss_pred hHH---------HHHHHHHHhccCCcchhcccC--CHHHHHHHHHHHhCCceEEEEEeCCCC---hH---HHHHHhhhcC
Q 040890 123 PYV---------ILDNILKIMMPQSALREIMGK--GFRQRKTALHDYLKNKRYLIVLEDVLT---NE---VRKYLGEALP 185 (221)
Q Consensus 123 ~~~---------~~~~il~~l~~~~~~~~~~~~--~~~~l~~~l~~~L~~kr~LlVlDdv~~---~~---~~~~l~~~l~ 185 (221)
+.+ ...+++..++........... .-+...-.|...|..+.-+|+||.--+ .. ....+...+.
T Consensus 196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 111 134555555543221111222 223334456677777888999997652 22 2222333332
Q ss_pred CCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 186 DRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 186 ~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
. .|..||++|++.+.+..++ ++++.|
T Consensus 276 ~--~g~tvIivsHdl~~~~~~a---dri~vl 301 (607)
T 3bk7_A 276 N--EGKAVLVVEHDLAVLDYLS---DVIHVV 301 (607)
T ss_dssp H--TTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred h--cCCEEEEEecChHHHHhhC---CEEEEE
Confidence 2 3778999999988887764 445544
No 143
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.20 E-value=0.00092 Score=59.94 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=34.3
Q ss_pred ceeeehhhHHHHHHHHhc----CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIE----GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+++|.++-.+.+.+.+.- .......+.++|++|+||||||+.+.+
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478888877777655431 222456899999999999999999987
No 144
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00069 Score=63.93 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=35.4
Q ss_pred ceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++|.+..++.+...+... ......+.++|+.|+|||+||+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4789999888888877531 11235788999999999999999887
No 145
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.19 E-value=0.0022 Score=61.09 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC---ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 152 KTALHDYLKNKRYLIVLEDVL---TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 152 ~~~l~~~L~~kr~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.-.|...|-.+.-||+||.-- |......+...+... |..||++|++.+.+..++ ++++.|
T Consensus 909 RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~---DrVivL 971 (986)
T 2iw3_A 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLT---EEVWAV 971 (986)
T ss_dssp HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTC---CEEECC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhC---CEEEEE
Confidence 345666777888999999754 334444444444322 346999999988877654 455554
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.18 E-value=0.00024 Score=54.19 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999999999873
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.0013 Score=50.75 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||||+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 148
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00034 Score=65.08 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=37.8
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-+.++|++..++.+...|.... ..-+.++|++|+|||++|+.+.+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999997743 33467999999999999998876
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.0063 Score=50.24 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++++|++|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988765
No 150
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.14 E-value=0.0014 Score=54.57 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=53.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCC---------CC-----CeEEEE--eCcCChHHHHHHHHHHhccCCcc-h
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS---------YF-----HCHAWV--SANLDPYVILDNILKIMMPQSAL-R 141 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv--s~~~~~~~~~~~il~~l~~~~~~-~ 141 (221)
+.-.++.|.|.+|+||||||..+........ .. ..++|+ ...++...+. ++++.++..... .
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHh
Confidence 4468999999999999999987765311111 11 356778 3445555554 345555432110 0
Q ss_pred hc---ccC-CHH---HHHHHHHHHhC--CceEEEEEeCCC
Q 040890 142 EI---MGK-GFR---QRKTALHDYLK--NKRYLIVLEDVL 172 (221)
Q Consensus 142 ~~---~~~-~~~---~l~~~l~~~L~--~kr~LlVlDdv~ 172 (221)
.+ ... +.+ ++.+.+...++ .+.-+||+|.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 00 011 222 35556666664 456699999885
No 151
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00022 Score=53.77 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|+|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 152
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.10 E-value=0.0019 Score=54.65 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=52.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCC----CeEEEE-eCc-CChHHHHHHHHHHhccCCc-------chhccc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYF----HCHAWV-SAN-LDPYVILDNILKIMMPQSA-------LREIMG 145 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv-s~~-~~~~~~~~~il~~l~~~~~-------~~~~~~ 145 (221)
+.-.++.|+|++|+|||||+..+.......... ..++|+ ... +.... +..++........ ......
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 456899999999999999999887632112111 234788 322 33333 3334444332110 000001
Q ss_pred C-CHHHHHHHHHHHhC------CceEEEEEeCCCC
Q 040890 146 K-GFRQRKTALHDYLK------NKRYLIVLEDVLT 173 (221)
Q Consensus 146 ~-~~~~l~~~l~~~L~------~kr~LlVlDdv~~ 173 (221)
. ...++++.+...+. .+.-|||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1 23445555555554 4678999998863
No 153
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.10 E-value=0.00025 Score=57.20 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCceeeehhhHHHHHHHHhc----------CCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE----------GPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.|.+.+.. +.....-+.++|++|+|||+||+.+.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46789998888888776541 1111233678999999999999999873
No 154
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.0019 Score=55.73 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=49.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCC----CCCeEEEE-eC-cCChHHHHHHHHHHhccCCcch-hc---ccC-C
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS----YFHCHAWV-SA-NLDPYVILDNILKIMMPQSALR-EI---MGK-G 147 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv-s~-~~~~~~~~~~il~~l~~~~~~~-~~---~~~-~ 147 (221)
+.-.++.|+|++|+|||||+..+.-...... .-...+|+ .. .++... +..+++.++...... .+ ... +
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccCC
Confidence 4468899999999999999996642111111 22457788 33 344433 344566554321100 00 011 2
Q ss_pred H---HHHHHHHHHHh-CCceEEEEEeCCC
Q 040890 148 F---RQRKTALHDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 148 ~---~~l~~~l~~~L-~~kr~LlVlDdv~ 172 (221)
. ..+...+...+ ..+.-+||+|.+.
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 23333444444 3467799999864
No 155
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.08 E-value=0.00026 Score=52.89 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 156
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.06 E-value=0.0044 Score=52.20 Aligned_cols=93 Identities=4% Similarity=0.055 Sum_probs=53.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCC----CCCeEEEE--eCcCChHHHHHHHHHHhccCCc-----c--hhccc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKS----YFHCHAWV--SANLDPYVILDNILKIMMPQSA-----L--REIMG 145 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~-----~--~~~~~ 145 (221)
+.-.++.|.|.+|+||||||..+........ .-..++|+ ...++...+. +++..++.... . .....
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 4568999999999999999988765322211 12456788 4445555543 44444433210 0 00001
Q ss_pred C-CHHHHHHHHHHHhC---CceEEEEEeCCC
Q 040890 146 K-GFRQRKTALHDYLK---NKRYLIVLEDVL 172 (221)
Q Consensus 146 ~-~~~~l~~~l~~~L~---~kr~LlVlDdv~ 172 (221)
. ...+++..+...++ .+.-|||+|.+.
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1 23344445555553 566799999885
No 157
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.06 E-value=0.0025 Score=53.24 Aligned_cols=85 Identities=8% Similarity=0.039 Sum_probs=48.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHH-HHHHHHH
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQR-KTALHDY 158 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l-~~~l~~~ 158 (221)
++-|.|++|+||||||.++.........=..++|| ...++.. .++.++...+...-... +.+++ .+.+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999997765421111012356788 3344432 25666653221111112 45555 4433332
Q ss_pred --h-CCceEEEEEeCCC
Q 040890 159 --L-KNKRYLIVLEDVL 172 (221)
Q Consensus 159 --L-~~kr~LlVlDdv~ 172 (221)
+ .++.-|||+|-+.
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 3 4567899999875
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.05 E-value=0.00028 Score=53.73 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 159
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.04 E-value=0.0005 Score=58.22 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=35.2
Q ss_pred ceeeehhhHHHHHHHHh-------------cCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 59 RCVMLLEDLKELLNQLI-------------EGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 59 ~~vG~~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 36888888888887773 11123456789999999999999999883
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.03 E-value=0.00036 Score=53.96 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|+|++|+||||||+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999999877
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.02 E-value=0.00035 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 162
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.02 E-value=0.0014 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++++|+.|+|||||++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988765
No 163
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.02 E-value=0.00056 Score=57.00 Aligned_cols=43 Identities=14% Similarity=0.069 Sum_probs=36.2
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.++.++.+...+..+ .-+.++|++|+|||+||+.+.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 356899999999888888763 3477899999999999999987
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.01 E-value=0.00057 Score=54.74 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=33.8
Q ss_pred CCCceeeehhhHHHHHHHHhc--C---------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLIE--G---------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.++...++.+.... . ..... +.|+|++|+||||||+.+.+.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 346788988776666554421 0 11122 889999999999999999884
No 165
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.01 E-value=0.00088 Score=52.07 Aligned_cols=52 Identities=13% Similarity=0.017 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCceE-EEEEeCCCC-----hHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 149 RQRKTALHDYLKNKRY-LIVLEDVLT-----NEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 149 ~~l~~~l~~~L~~kr~-LlVlDdv~~-----~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
....+..++.+.+.+| |||||++-. .-..+++...+.......-||+|+|+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4455666677766666 999998721 122233444443344566799999975
No 166
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.0032 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998876
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.00 E-value=0.00037 Score=53.72 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.00035 Score=53.99 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|+|+.|+||||+|+.+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 169
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.00 E-value=0.00027 Score=53.02 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999887
No 170
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.99 E-value=0.0035 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999876
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.98 E-value=0.004 Score=51.76 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=38.0
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
..-.++.|.|.+|+||||||..+..+...+. ...+|++-..+..++...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHH
Confidence 4467899999999999999987765322222 4677776667777777776654
No 172
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.98 E-value=0.00041 Score=53.89 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 173
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.98 E-value=0.0017 Score=57.92 Aligned_cols=115 Identities=10% Similarity=-0.039 Sum_probs=59.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccC-------------Ccchhcc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQ-------------SALREIM 144 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~-------------~~~~~~~ 144 (221)
..-.+++|.|.+|+|||||++.++...... . ...+++ .+. ....+...+ ..++.. ...+...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G-~~vi~~~~ee-~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-K-ERAILFAYEE-SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-T-CCEEEEESSS-CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-C-CCEEEEEEeC-CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 345789999999999999999887632211 1 123455 332 233333322 111110 0111111
Q ss_pred cCCHHHHHHHHHHHhCCceEEEEEeCCC--C--------hHHHHHHhhhcCCCCCCeEEEEEcCCh
Q 040890 145 GKGFRQRKTALHDYLKNKRYLIVLEDVL--T--------NEVRKYLGEALPDRHNGSRVLAMLTSN 200 (221)
Q Consensus 145 ~~~~~~l~~~l~~~L~~kr~LlVlDdv~--~--------~~~~~~l~~~l~~~~~gs~IivTTR~~ 200 (221)
+..+.....+...+..+.-+||+|-+. + ......+...+. ..|..||+||.+.
T Consensus 355 -S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 -GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp -CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred -CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 122333445555667788899999322 1 112223333333 3477788888775
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00056 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+++|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 175
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.95 E-value=0.0024 Score=57.62 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 357899999999999999999876
No 176
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.94 E-value=0.0064 Score=47.50 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=63.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCC---c-chhcccC-CHHHHHHHHHH
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQS---A-LREIMGK-GFRQRKTALHD 157 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~---~-~~~~~~~-~~~~l~~~l~~ 157 (221)
+|.|.|++|+||+|+|+.+.+. |.. ..+ +.-+++++-+..-.... . ....-.. +.+-....+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~i----stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHI----STGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HCC-EEE----EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HCC-eEE----cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHH
Confidence 5788999999999999998873 221 122 23344544332211100 0 0000011 55566778888
Q ss_pred HhCCceEEEEEeCCC-ChHHHHHHhhhcCC--CCCCeEEEEEcCChHHHhhc-----cCCCCceEecc
Q 040890 158 YLKNKRYLIVLEDVL-TNEVRKYLGEALPD--RHNGSRVLAMLTSNEIFRFC-----RLDNDLMFTLI 217 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~-~~~~~~~l~~~l~~--~~~gs~IivTTR~~~va~~~-----~~~~~~v~~l~ 217 (221)
.|..... +|||..- +..+.+.|...+.. .....-|.+.--++.+..++ +...+.+|++.
T Consensus 71 ~l~~~~~-~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~ 137 (206)
T 3sr0_A 71 VFPKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVK 137 (206)
T ss_dssp HCCSSSC-EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT
T ss_pred hhccCCc-eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeee
Confidence 8865554 6889984 54444444333221 12233344444444443333 23456677654
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.94 E-value=0.00043 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 178
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.92 E-value=0.001 Score=55.37 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++.|+|++|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 467999999999999999988776
No 179
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.00049 Score=55.28 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.90 E-value=0.00051 Score=52.94 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+++|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998773
No 181
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.00092 Score=54.59 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=31.9
Q ss_pred CCceeeehhhHHHHHHHHhc---C---------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIE---G---------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.++.|.++.++.|.+.+.. . ..... +.++|++|+||||||+.+...
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 34677888777777665421 0 11122 899999999999999999883
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.89 E-value=0.00052 Score=53.52 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999999873
No 183
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.88 E-value=0.00059 Score=51.96 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 184
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.88 E-value=0.00055 Score=52.24 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999875
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.86 E-value=0.00043 Score=52.95 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999886
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.86 E-value=0.0007 Score=52.49 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|+|+|+.|+||||||+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999887
No 187
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00058 Score=51.86 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 188
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.85 E-value=0.0051 Score=55.46 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 457899999999999999998876
No 189
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.84 E-value=0.0018 Score=58.67 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999999876
No 190
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.84 E-value=0.00068 Score=52.06 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 191
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00056 Score=51.90 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.++|+.|+||||+|+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 192
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.00084 Score=54.63 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=34.8
Q ss_pred cCCCceeeehhhHHHHHHHHhc--C---------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 55 SSKERCVMLLEDLKELLNQLIE--G---------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 55 ~~~~~~vG~~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-.+++|.++.++++.+.... . ..... +.|+|++|+||||||+.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 3456789988877777655421 0 11122 889999999999999999884
No 193
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.82 E-value=0.0007 Score=60.38 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=61.5
Q ss_pred CceEEEEEccCCCcHHHHHHHH-hcCcCCCCCCCeEEEE-eCcCChHHHHHHHHHHhccCCcch----------------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEA-YNSDYVKSYFHCHAWV-SANLDPYVILDNILKIMMPQSALR---------------- 141 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v-~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~~l~~~~~~~---------------- 141 (221)
.-.+++|+|++|+|||||++.+ +.- ....-...+++ ..+ ....+ ....+.++-..+.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~G--l~~~~~g~i~v~g~~-~~~~~-~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~ 113 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNG--IIEFDEPGVFVTFEE-TPQDI-IKNARSFGWDLAKLVDEGKLFILDASPDPE 113 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHCCCEEEEESSS-CHHHH-HHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEeC-CHHHH-HHHHHHcCCChHHhhccCcEEEEecCcccc
Confidence 3578999999999999999984 221 11111346677 332 22221 12222221100000
Q ss_pred --hcccC-CHHHHHHHHHHHh-CCceEEEEEeCCCC--------h---HHHHHHhhhcCCCCCCeEEEEEcCChHH
Q 040890 142 --EIMGK-GFRQRKTALHDYL-KNKRYLIVLEDVLT--------N---EVRKYLGEALPDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 142 --~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~~--------~---~~~~~l~~~l~~~~~gs~IivTTR~~~v 202 (221)
.-.+. +...+...+...| .+++-+|+||..-. . ..+..+...+. ..|..||+||.+.+.
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~--~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK--QIGATTVMTTERIEE 187 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH--HHTCEEEEEEECSSS
T ss_pred hhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH--HCCCEEEEEecCCCC
Confidence 00112 3455566666666 46777999998742 1 12233333343 246778888877654
No 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.82 E-value=0.0012 Score=54.25 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0024 Score=55.64 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.++|++|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987764
No 196
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.81 E-value=0.0006 Score=52.10 Aligned_cols=58 Identities=16% Similarity=0.339 Sum_probs=34.3
Q ss_pred hCCceEEEEEeCCC-----ChHHHHHHhhhcCCCCCCeEEEEEc---CChHHHhhccC-CCCceEeccc
Q 040890 159 LKNKRYLIVLEDVL-----TNEVRKYLGEALPDRHNGSRVLAML---TSNEIFRFCRL-DNDLMFTLIL 218 (221)
Q Consensus 159 L~~kr~LlVlDdv~-----~~~~~~~l~~~l~~~~~gs~IivTT---R~~~va~~~~~-~~~~v~~l~~ 218 (221)
+..+.-+++||.+- +....+.+...+.. .+..+|++| .+...+..++. ....++++..
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~ 162 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecC
Confidence 66777899999942 23344455555543 345466666 45566665543 2456777654
No 197
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.80 E-value=0.00063 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.78 E-value=0.00065 Score=53.23 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 199
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.0011 Score=53.04 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=26.9
Q ss_pred hHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 66 DLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 66 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+.++.+.+.........|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444333223467899999999999999999876
No 200
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.77 E-value=0.00053 Score=53.16 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++++|+|++|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36789999999999999998865
No 201
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.76 E-value=0.00082 Score=53.74 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 202
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.76 E-value=0.00058 Score=52.98 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|+|++|+|||||++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999999876
No 203
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.00071 Score=52.24 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999876
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.75 E-value=0.00087 Score=51.86 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 205
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.74 E-value=0.00088 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+++|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4568999999999999999998876
No 206
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.73 E-value=0.00076 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 207
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00083 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.73 E-value=0.0015 Score=54.67 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=27.6
Q ss_pred hhHHHHHHHHhcC--CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 65 EDLKELLNQLIEG--PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 65 ~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+..+...+... .....+++|.|+.|+|||||++.+..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3344444444332 24567999999999999999998865
No 209
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.73 E-value=0.00083 Score=52.24 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999998875
No 210
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.73 E-value=0.00077 Score=51.69 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999887
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.72 E-value=0.0041 Score=54.26 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999877654
No 212
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.72 E-value=0.00082 Score=54.18 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.00084 Score=53.60 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+++|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999984
No 214
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.71 E-value=0.0015 Score=58.05 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=35.8
Q ss_pred CceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|.++.++.+...+..+ .-+.++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 45889998888888877663 35778999999999999999884
No 215
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.71 E-value=0.00098 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 216
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.71 E-value=0.00068 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.|+|++|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 217
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.00092 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....|.|+|+.|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 218
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.70 E-value=0.0009 Score=51.05 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 219
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.69 E-value=0.00055 Score=52.85 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999886
No 220
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.69 E-value=0.002 Score=61.28 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCceEEEEEeCCCC---hHHH----HHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 160 KNKRYLIVLEDVLT---NEVR----KYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 160 ~~kr~LlVlDdv~~---~~~~----~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
..++-||+||..-. ...- ..+...+. ...|+.+|++|++.+++..+.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~-~~~g~~vl~aTH~~el~~lad 792 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA-TKIGAFCMFATHFHELTALAN 792 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH-HTTCCEEEEEESCGGGGGGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEEcCcHHHHHHhc
Confidence 46778999999852 2222 22333332 124889999999999887664
No 221
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.0013 Score=52.82 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|.++|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 222
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.66 E-value=0.002 Score=50.25 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+.+..++.. .....|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444433 24688899999999999999888763
No 223
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.65 E-value=0.0011 Score=50.26 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.+.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 224
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.65 E-value=0.00076 Score=53.08 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 225
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0012 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.+.|++|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 226
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.63 E-value=0.0017 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+.++|++|+|||+||+.+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999987
No 227
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.63 E-value=0.001 Score=55.51 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=33.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+..++.+...+.... ..-+.++|++|+|||+||+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 4568999886665544444322 233889999999999999999873
No 228
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.63 E-value=0.0082 Score=52.45 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILK 132 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~ 132 (221)
..-.++.|.|.+|+||||||..+..+..... =..++|++-..+..++...++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLVMRMLC 253 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHH
Confidence 3457899999999999999988776322111 1246677666666666666543
No 229
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.63 E-value=0.0011 Score=53.62 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 230
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0012 Score=51.00 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367899999999999999998773
No 231
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.61 E-value=0.0025 Score=52.80 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998876
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.61 E-value=0.0013 Score=49.25 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++++|+.|+|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 233
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.60 E-value=0.001 Score=50.81 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 234
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.60 E-value=0.007 Score=55.49 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHhCCceE--EEEEeCCC------ChHHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 147 GFRQRKTALHDYLKNKRY--LIVLEDVL------TNEVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~kr~--LlVlDdv~------~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+.+.+ .|...|..+.- ||+||.-- +...+.++...+. ..|..||++|++.+++..| ++++.|
T Consensus 206 Ge~QRv-~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~~----d~ii~l 276 (670)
T 3ux8_A 206 GEAQRI-RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLAA----DYLIDI 276 (670)
T ss_dssp HHHHHH-HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHC----SEEEEE
T ss_pred HHHHHH-HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhhC----CEEEEe
Confidence 333433 45556655544 99999754 2233333334443 2367899999999987753 456655
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.60 E-value=0.0011 Score=52.40 Aligned_cols=114 Identities=8% Similarity=0.044 Sum_probs=58.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcC------------ChHHHHHHHHHH--hccCCcchhcc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANL------------DPYVILDNILKI--MMPQSALREIM 144 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~------------~~~~~~~~il~~--l~~~~~~~~~~ 144 (221)
.-.+++|+|++|+|||||.+.+...... ..+...+.+ .++. -....+..+... +..........
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p-~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPL-YDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT-TTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC-CceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 3578999999999999999998873211 012222222 1111 112233332221 00000000000
Q ss_pred cC-CHHHHHHHHHHHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHHHh
Q 040890 145 GK-GFRQRKTALHDYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEIFR 204 (221)
Q Consensus 145 ~~-~~~~l~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~va~ 204 (221)
-. .. +.+.+.+.. .-+++|| + +......+...++ .+..|+++|.+.+.+.
T Consensus 94 yg~~~----~~v~~~l~~-G~illLD-L-D~~~~~~i~~~l~---~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 94 YGTSR----EAIEQVLAT-GVDVFLD-I-DWQGAQQIRQKMP---HARSIFILPPSKIELD 144 (219)
T ss_dssp EEEEH----HHHHHHHTT-TCEEEEE-C-CHHHHHHHHHHCT---TCEEEEEECSSHHHHH
T ss_pred CCCCH----HHHHHHHhc-CCeEEEE-E-CHHHHHHHHHHcc---CCEEEEEECCCHHHHH
Confidence 01 22 234445543 3567788 4 5555666666666 4778999998866543
No 236
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.59 E-value=0.001 Score=50.14 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 237
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.59 E-value=0.00076 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=16.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 238
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.59 E-value=0.0012 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 239
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.58 E-value=0.0008 Score=51.04 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=19.7
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.0012 Score=51.41 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999886
No 241
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.56 E-value=0.0013 Score=52.93 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999874
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.56 E-value=0.0087 Score=49.42 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+++++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999987764
No 243
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.55 E-value=0.002 Score=50.09 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 64 LEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 64 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
++..+.+...+.. ....++.|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344444444433 24688999999999999999888763
No 244
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.55 E-value=0.00096 Score=49.89 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 245
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.54 E-value=0.0015 Score=49.43 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.++|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998876
No 246
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.53 E-value=0.0013 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.53 E-value=0.0018 Score=54.85 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=30.1
Q ss_pred eeehhhHHHHHHHHhc--CCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 61 VMLLEDLKELLNQLIE--GPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
|+.+.-.+.+++.+.. .......|.++|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4445556666666642 122356688999999999999987765
No 248
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.53 E-value=0.0014 Score=50.78 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 249
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.52 E-value=0.0068 Score=53.47 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=57.5
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHHhccC---------
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKIMMPQ--------- 137 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~l~~~--------- 137 (221)
.++.|.--.. -.-++|.|.+|+|||+|+..+.++. .+.+-+.++++ .+.-...++.+++...-...
T Consensus 155 vID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred Eeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3555543222 3457899999999999998887631 12233566666 44445667777776541111
Q ss_pred ------CcchhcccCCHHHHHHHHHHHhC---CceEEEEEeCCC
Q 040890 138 ------SALREIMGKGFRQRKTALHDYLK---NKRYLIVLEDVL 172 (221)
Q Consensus 138 ------~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVlDdv~ 172 (221)
.+.|.....-.....-.+.++++ ++.+||++||+.
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11110000112222334556664 589999999984
No 250
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.51 E-value=0.014 Score=57.57 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-..++|+|..|+|||||++.+++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 46799999999999999999986
No 251
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.51 E-value=0.0098 Score=51.93 Aligned_cols=53 Identities=9% Similarity=0.024 Sum_probs=35.5
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
..-.++.|.|.+|+||||||..+..+...+ =..++|++-..+..++...++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVT 247 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHH
Confidence 445788999999999999998776542222 12566675555556666665543
No 252
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.51 E-value=0.0015 Score=50.39 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|+|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 253
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0014 Score=48.84 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 254
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.51 E-value=0.0016 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999876
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.50 E-value=0.0014 Score=49.80 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++.|+|+.|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999998877
No 256
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.50 E-value=0.0031 Score=53.34 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554344678999999999999999988754
No 257
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.50 E-value=0.0015 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHh
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~ 102 (221)
.+.+||+|.|-||+||||.|..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 357999999999999999876543
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.0014 Score=50.66 Aligned_cols=23 Identities=4% Similarity=-0.198 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.48 E-value=0.0017 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999998864
No 260
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.47 E-value=0.00073 Score=52.38 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 261
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.47 E-value=0.0038 Score=59.26 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=30.6
Q ss_pred CCceEEEEEeCCCC---hHHH----HHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 160 KNKRYLIVLEDVLT---NEVR----KYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 160 ~~kr~LlVlDdv~~---~~~~----~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
..++-||+||..-. ...- ..+...+. ...|+.||++|++.+++..+.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~el~~l~~ 803 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPPVCELEK 803 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHHHHHHHh
Confidence 46778999999863 2211 13333332 134789999999998887654
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.45 E-value=0.00099 Score=52.63 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=16.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHh-c
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAY-N 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~-~ 103 (221)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 263
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.45 E-value=0.021 Score=50.41 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=36.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
..-.++.|.|.+|+||||||..+..+...... ..++|++-..+..++...++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEESVEETAEDLIGL 293 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccCCHHHHHHHHHHH
Confidence 34578899999999999999877653222211 2466776666677777766543
No 264
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.45 E-value=0.0015 Score=49.77 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 265
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.44 E-value=0.0018 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
No 266
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.44 E-value=0.02 Score=49.83 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHH
Q 040890 68 KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKI 133 (221)
Q Consensus 68 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~ 133 (221)
..|-+++ .+=..-.++.|.|.+|+||||||..+..+...... ..++|++-..+..++...++..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEMPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSSCHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHH
Confidence 3443434 33345678899999999999999877653221111 2466776666677777776654
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.44 E-value=0.0062 Score=53.47 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=39.3
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHH
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKI 133 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~ 133 (221)
.++.|.--.. -.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++ .+.-...++++++...
T Consensus 143 ~ID~l~pigk-GQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAK-GGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEET-TCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEeccccccc-CCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555543222 3557899999999999998887631 12223455665 4445566777777764
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.42 E-value=0.002 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 269
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.42 E-value=0.017 Score=52.89 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhCC--ceEEEEEeCCCC---h---HHHHHHhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 147 GFRQRKTALHDYLKN--KRYLIVLEDVLT---N---EVRKYLGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 147 ~~~~l~~~l~~~L~~--kr~LlVlDdv~~---~---~~~~~l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.+.+.+...+..+.+ .+-+|+||.--+ . ....++...+. ..|..||++|.+.+++..| ++++.|
T Consensus 547 G~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~--~~g~tvi~vtHd~~~~~~~----d~i~~l 618 (670)
T 3ux8_A 547 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV--DNGDTVLVIEHNLDVIKTA----DYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHTTC----SEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHhC----CEEEEe
Confidence 444444444443332 346999998642 2 22223333333 2377899999999987643 567766
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.41 E-value=0.0096 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999887
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0016 Score=51.20 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.|.|+.|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 272
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.39 E-value=0.0021 Score=50.06 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 273
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.39 E-value=0.014 Score=50.71 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 66 DLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 66 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.++|.++|... ....++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666432 13468999999999999999977764
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.38 E-value=0.0018 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.+.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999877
No 275
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.37 E-value=0.0022 Score=50.66 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|.|.|++|+||+|.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999887
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.36 E-value=0.0019 Score=49.61 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999987
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.36 E-value=0.00064 Score=58.38 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-..++|+|.+|+|||||++.+.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHH
Confidence 45789999999999999988765
No 278
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.001 Score=50.54 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.35 E-value=0.0019 Score=50.26 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999866
No 280
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0023 Score=53.10 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++++|+.|+|||||++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999988765
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0015 Score=50.43 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+++|+|+.|+|||||++.+...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999988763
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.34 E-value=0.0045 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988765
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.33 E-value=0.0016 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46889999999999999998875
No 284
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.31 E-value=0.0039 Score=55.16 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|.+|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999998865
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.31 E-value=0.0017 Score=50.80 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999877
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.31 E-value=0.0021 Score=51.72 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 287
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.29 E-value=0.00029 Score=67.61 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=31.7
Q ss_pred HhCCceEEEEEeCCCC---hHH----HHHHhhhcCCCCCCeEEEEEcCChHHHhhcc
Q 040890 158 YLKNKRYLIVLEDVLT---NEV----RKYLGEALPDRHNGSRVLAMLTSNEIFRFCR 207 (221)
Q Consensus 158 ~L~~kr~LlVlDdv~~---~~~----~~~l~~~l~~~~~gs~IivTTR~~~va~~~~ 207 (221)
.+..++-||+||..-. ... ...+...+.. ..|+.+|++|++.+.+...+
T Consensus 864 ~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 864 MHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE-TIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp HHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-TSCCEEEEECCCHHHHHHTS
T ss_pred HhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHHhC
Confidence 3467788999999852 111 1122333321 23789999999999988765
No 288
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.29 E-value=0.0051 Score=47.64 Aligned_cols=87 Identities=9% Similarity=-0.046 Sum_probs=44.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHHHHHh
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTALHDYL 159 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~~L 159 (221)
.|+|-|.-|+||||+++.+.+. .+..-....+. +......+.+++++..-........-.-. +..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998873 32222223334 32233344445544332111000000001 3344456667777
Q ss_pred CCceEEEEEeCCC
Q 040890 160 KNKRYLIVLEDVL 172 (221)
Q Consensus 160 ~~kr~LlVlDdv~ 172 (221)
.... .+|.|-..
T Consensus 80 ~~g~-~Vi~DRy~ 91 (197)
T 3hjn_A 80 SEGY-AVLLDRYT 91 (197)
T ss_dssp TTTC-EEEEESCH
T ss_pred HCCC-eEEecccc
Confidence 5544 56778543
No 289
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.28 E-value=0.011 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++.++|++|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988765
No 290
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.28 E-value=0.0049 Score=54.10 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=30.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILK 132 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~ 132 (221)
..++|+|.+|+|||||++.+......... +.++++ .+.....+++.++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhh
Confidence 35789999999999999988763222111 334455 333344455555543
No 291
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.27 E-value=0.016 Score=57.22 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-..++|+|+.|+|||||++.+.+-
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 3578999999999999999999863
No 292
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.27 E-value=0.0022 Score=49.92 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.27 E-value=0.0022 Score=49.31 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.24 E-value=0.0026 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|+.|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 478999999999999999999763
No 295
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.23 E-value=0.0031 Score=55.97 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=35.3
Q ss_pred CCCceeeehhhHHHHHHHHh---cC----C---CCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 56 SKERCVMLLEDLKELLNQLI---EG----P---PQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 56 ~~~~~vG~~~~~~~l~~~L~---~~----~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.+++|.++.+.++.+... .. + .-.+=+.|+|++|+||||||+.+.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45678999888777766542 21 0 11223889999999999999999884
No 296
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.20 E-value=0.0044 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999999886
No 297
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.20 E-value=0.019 Score=48.29 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=38.3
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHh
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIM 134 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l 134 (221)
..-.++.|.|.+|+||||||..+..+... +=..++|+|-..+..++...++...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRALSDL 97 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 44578899999999999999887653222 1134566677777788877776543
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0026 Score=48.44 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++.|+|+.|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
No 299
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.19 E-value=0.003 Score=55.16 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=34.7
Q ss_pred CceeeehhhHHHHHHHHhcC------------CCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 58 ERCVMLLEDLKELLNQLIEG------------PPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++|.++.++.|...+... ....+-+.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45788888888887666321 11235588999999999999999887
No 300
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.18 E-value=0.0039 Score=48.88 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.2
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 65 EDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 65 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-+..|..++.. -+....+.++|++|+||||+|..+.+
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 345666666654 23345689999999999999988877
No 301
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0021 Score=51.86 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.13 E-value=0.0068 Score=54.92 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+.+.
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 356899988888877777653 47889999999999999999883
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.12 E-value=0.0034 Score=53.35 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|+.|+|||||++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999988765
No 304
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.11 E-value=0.0028 Score=50.10 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999887
No 305
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.07 E-value=0.0017 Score=53.57 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=18.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.06 E-value=0.0032 Score=52.34 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+.-.+++|+|+.|+|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3457899999999999999998875
No 307
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0056 Score=48.17 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=61.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcch---------h--------
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALR---------E-------- 142 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~---------~-------- 142 (221)
.-.++.|.|.+|+||||||..+..... . .=...+|++......++...+. .++...... +
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~-~~~~v~~~~~e~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~ 98 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K-MGEPGIYVALEEHPVQVRQNMA-QFGWDVKPYEEKGMFAMVDAFTAGIGK 98 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H-TTCCEEEEESSSCHHHHHHHHH-TTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEccCCHHHHHHHHH-HcCCCHHHHhhCCcEEEEecchhhccc
Confidence 457899999999999999877654211 1 1134567744444455444332 222210000 0
Q ss_pred -------c-ccC-CHHHHHHHHHHHhC-CceEEEEEeCCCC-----hHH----HHHHhhhcCCCCCCeEEEEEcCChH
Q 040890 143 -------I-MGK-GFRQRKTALHDYLK-NKRYLIVLEDVLT-----NEV----RKYLGEALPDRHNGSRVLAMLTSNE 201 (221)
Q Consensus 143 -------~-~~~-~~~~l~~~l~~~L~-~kr~LlVlDdv~~-----~~~----~~~l~~~l~~~~~gs~IivTTR~~~ 201 (221)
. ... +..++...+.+.++ .+.-++|+|.+.. ... +..+...+. ..|..||+|+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~--~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 99 SKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLA--GTGCTSIFVSQVSV 174 (247)
T ss_dssp --CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHH--HTTCEEEEEEECC-
T ss_pred ccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHH--HCCCeEEEEecCCC
Confidence 0 011 45556666666653 2345899998752 212 223333222 34677888876443
No 308
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.04 E-value=0.0034 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 309
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.04 E-value=0.0033 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 310
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.01 E-value=0.003 Score=49.35 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999876
No 311
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.00 E-value=0.0036 Score=48.75 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.99 E-value=0.0036 Score=49.21 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 313
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0037 Score=52.68 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.97 E-value=0.034 Score=56.68 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=50.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+..+.+.|+|++|+|||+||.++...... .. ...+|+ ...++... ++.++..-..-.-... ..+++.+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~-~G-~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-EG-KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT-TT-CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH-cC-CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45688999999999999999887663222 12 234566 33444433 3444421110000011 445566666
Q ss_pred HHHh-CCceEEEEEeCCC
Q 040890 156 HDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L-~~kr~LlVlDdv~ 172 (221)
.... ..+..+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 6554 3566799999983
No 315
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.96 E-value=0.033 Score=50.18 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 64 LEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 64 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++....+..+.. ..++.|+|.+|+||||++..+..
T Consensus 191 ~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 191 SEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHH
Confidence 3444455555443 36788999999999999988765
No 316
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.96 E-value=0.014 Score=57.36 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-..++|+|+.|+|||||++.+..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999876
No 317
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.95 E-value=0.0037 Score=50.96 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 318
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.94 E-value=0.022 Score=53.60 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHhCCc---eEEEEEeCCC---ChHHHHH---HhhhcCCCCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 154 ALHDYLKNK---RYLIVLEDVL---TNEVRKY---LGEALPDRHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 154 ~l~~~L~~k---r~LlVlDdv~---~~~~~~~---l~~~l~~~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.|...|..+ +-|+|||.-- +...... +...+. ..|..||++|++.+++. + .++++.|
T Consensus 740 ~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~--~~G~tVIvisHdl~~i~-~---aDrii~L 805 (842)
T 2vf7_A 740 KLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV--DAGNTVIAVEHKMQVVA-A---SDWVLDI 805 (842)
T ss_dssp HHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHT-T---CSEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHH-h---CCEEEEE
Confidence 455566553 6899999764 2223333 333332 24778999999999884 3 2567766
No 319
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.94 E-value=0.0081 Score=59.13 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-.+++|+|+.|+|||||++.+..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999986
No 320
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.92 E-value=0.0041 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-.++|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 321
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.92 E-value=0.0044 Score=48.98 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...|.+.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999877
No 322
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.89 E-value=0.0042 Score=46.91 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.89 E-value=0.0041 Score=51.81 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...+++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3689999999999999999999864
No 324
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.87 E-value=0.0052 Score=49.06 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++.+.|.||+|||||+..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888899999999999988874
No 325
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.87 E-value=0.0047 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 326
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.85 E-value=0.0049 Score=48.81 Aligned_cols=25 Identities=12% Similarity=-0.040 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998875
No 327
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.85 E-value=0.0042 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999998874
No 328
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.82 E-value=0.0062 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.4
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999998764
No 329
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.81 E-value=0.0086 Score=52.33 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=48.7
Q ss_pred EEEEccCCCcHHHHHHHHhcCcCCC-CCCC-eEEEE---eCcCChHHHHHHHHHHh--cc------CCcchhcccCCHHH
Q 040890 84 VAVIDSYGFDKAVFAAEAYNSDYVK-SYFH-CHAWV---SANLDPYVILDNILKIM--MP------QSALREIMGKGFRQ 150 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~~~~~-~~F~-~~~wv---s~~~~~~~~~~~il~~l--~~------~~~~~~~~~~~~~~ 150 (221)
++|.|..|+|||+|+.++.+..... ++=+ .++++ .+.-...++++++...- .. ..+.|.....-...
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 6788999999999999888753331 1111 33444 45555667777765531 11 01111000000111
Q ss_pred HHHHHHHHhC---CceEEEEEeCCC
Q 040890 151 RKTALHDYLK---NKRYLIVLEDVL 172 (221)
Q Consensus 151 l~~~l~~~L~---~kr~LlVlDdv~ 172 (221)
..-.+.++++ ++.+||++||+-
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1223455553 789999999984
No 330
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.80 E-value=0.0054 Score=46.25 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=18.9
Q ss_pred eEEEEEccCCCcHHHHHHHHh
Q 040890 82 SVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~ 102 (221)
.+.+|+|+.|+|||||+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999875
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.78 E-value=0.033 Score=56.79 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=59.0
Q ss_pred eehhhHHHHHHHHh-cCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcc
Q 040890 62 MLLEDLKELLNQLI-EGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSAL 140 (221)
Q Consensus 62 G~~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~ 140 (221)
+...-...|-.+|. .+=+.-+++.|.|++|+||||||.++...... .=..++|++-..+...+. ++.++.....
T Consensus 363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~---a~~lGvd~~~ 437 (2050)
T 3cmu_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY---ARKLGVDIDN 437 (2050)
T ss_dssp EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH---HHHTTCCTTT
T ss_pred eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH---HHHcCCCHHH
Confidence 33333445555453 22245689999999999999999887663222 123567882222222221 4445442211
Q ss_pred hhcccC-CHHHHHHHHHHHh-CCceEEEEEeCCC
Q 040890 141 REIMGK-GFRQRKTALHDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 141 ~~~~~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~ 172 (221)
..-.+. +.+++.+.+.... ..+.-+||+|.+.
T Consensus 438 L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 438 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 111122 6666776666554 3456699999875
No 332
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.77 E-value=0.0052 Score=51.41 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|+|+.|+||||||..+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999998876
No 333
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.76 E-value=0.011 Score=48.19 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..-+..||....+....+.++|++|+|||.||..+.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3345666655423456789999999999999999887
No 334
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.75 E-value=0.014 Score=51.55 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHH-HHHhcCcCCCCCCCe-EEEE---eCcCChHHHHHHHHHHhcc--------
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFA-AEAYNSDYVKSYFHC-HAWV---SANLDPYVILDNILKIMMP-------- 136 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv---s~~~~~~~~~~~il~~l~~-------- 136 (221)
.++.|.--.. -.-++|.|.+|+|||+|| ..+.+.. . -+. ++++ .+...+.++.+.+...-..
T Consensus 165 aID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGR-GQRELIIGDRQTGKTAIAIDTIINQK--G--QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEET-TCBEEEEEETTSSHHHHHHHHHHTTT--T--TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred cccccccccc-CCEEEEEcCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3454543222 244689999999999996 5777732 2 342 2344 4444556666666652111
Q ss_pred CCcchhcccCCHHHHHHHHHHHh--CCceEEEEEeCCC
Q 040890 137 QSALREIMGKGFRQRKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
..+.|.....-.....-.+.+++ .++..||++||+.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11111000000001112334444 5899999999984
No 335
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.75 E-value=0.01 Score=49.86 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
+++-+.-.-....+++|+|++|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443432224568999999999999999998864
No 336
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.74 E-value=0.029 Score=52.46 Aligned_cols=48 Identities=19% Similarity=0.017 Sum_probs=35.3
Q ss_pred CCceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.++.|.++..++|.+.+... -...+-+.++|++|+|||.||+++.+.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 345778888888887765421 122344678999999999999999983
No 337
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.73 E-value=0.0067 Score=51.03 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|+|+.|+||||||..+.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 338
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.73 E-value=0.0082 Score=45.16 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 339
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.70 E-value=0.0068 Score=48.01 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 340
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.69 E-value=0.013 Score=54.36 Aligned_cols=47 Identities=6% Similarity=0.005 Sum_probs=36.3
Q ss_pred CceeeehhhHHHHHHHHhcC-------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 58 ERCVMLLEDLKELLNQLIEG-------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 58 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999888888776531 122347889999999999999999873
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.68 E-value=0.0056 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998876
No 342
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.66 E-value=0.0065 Score=50.66 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|.|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46889999999999999999876
No 343
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.64 E-value=0.0072 Score=49.81 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++++|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988775
No 344
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.63 E-value=0.008 Score=45.12 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999998863
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.007 Score=48.00 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999998873
No 346
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.62 E-value=0.02 Score=57.49 Aligned_cols=102 Identities=13% Similarity=-0.029 Sum_probs=57.1
Q ss_pred hHHHHHHHHh-cCCCCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHHHhccCCcchhcc
Q 040890 66 DLKELLNQLI-EGPPQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILKIMMPQSALREIM 144 (221)
Q Consensus 66 ~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~~l~~~~~~~~~~ 144 (221)
-..+|-.+|. .+=..-.++.|.|.+|+||||||..+...... .=..++|++-......+. ++.++.....-.-.
T Consensus 716 G~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~Ees~~ql~---A~~lGvd~~~L~i~ 790 (1706)
T 3cmw_A 716 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCS 790 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEE
T ss_pred CcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEeccchHHHHH---HHHcCCChhheEEe
Confidence 3344444443 22244688999999999999999888663221 112466773322223332 44444321111011
Q ss_pred cC-CHHHHHHHHHHHh-CCceEEEEEeCCC
Q 040890 145 GK-GFRQRKTALHDYL-KNKRYLIVLEDVL 172 (221)
Q Consensus 145 ~~-~~~~l~~~l~~~L-~~kr~LlVlDdv~ 172 (221)
+. +.+++.+.++... ..+.-+||+|.+.
T Consensus 791 ~~~~leei~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 791 QPDTGEQALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred cCCcHHHHHHHHHHHHHccCCCEEEEechh
Confidence 22 5666676666554 2456699999986
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.62 E-value=0.006 Score=44.35 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 348
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.60 E-value=0.0096 Score=49.18 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHh
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 102 (221)
+++|.+.+. -.+++++|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 555555543 3678999999999999999987
No 349
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.60 E-value=0.085 Score=50.18 Aligned_cols=130 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEEccCCCcHHHHHHHHh-------------cCcCC-----CCCCCeEEEE-eCcCC---------------------
Q 040890 83 VVAVIDSYGFDKAVFAAEAY-------------NSDYV-----KSYFHCHAWV-SANLD--------------------- 122 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~-------------~~~~~-----~~~F~~~~wv-s~~~~--------------------- 122 (221)
+++|+|..|+|||||++.+. ..... .+.++..+++ ..+..
T Consensus 652 iv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lf 731 (972)
T 2r6f_A 652 FVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVF 731 (972)
T ss_dssp EEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHh
Q ss_pred --------------------------------------------------------------------------------
Q 040890 123 -------------------------------------------------------------------------------- 122 (221)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (221)
T Consensus 732 a~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e 811 (972)
T 2r6f_A 732 ASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVED 811 (972)
T ss_dssp HTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHH
T ss_pred ccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHH
Q ss_pred ---------hHHHHHHHHHHhccCC-cchhcccC--CHHHHHHHHHHHhCCce---EEEEEeCCC---ChHHHHHHhhhc
Q 040890 123 ---------PYVILDNILKIMMPQS-ALREIMGK--GFRQRKTALHDYLKNKR---YLIVLEDVL---TNEVRKYLGEAL 184 (221)
Q Consensus 123 ---------~~~~~~~il~~l~~~~-~~~~~~~~--~~~~l~~~l~~~L~~kr---~LlVlDdv~---~~~~~~~l~~~l 184 (221)
...-..+++..++... ........ .-+...-.|...|..+. -|+|||.-- +......|...+
T Consensus 812 ~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL 891 (972)
T 2r6f_A 812 ALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVL 891 (972)
T ss_dssp HHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_pred CC-CCCCeEEEEEcCChHHHhhccCCCCceEec
Q 040890 185 PD-RHNGSRVLAMLTSNEIFRFCRLDNDLMFTL 216 (221)
Q Consensus 185 ~~-~~~gs~IivTTR~~~va~~~~~~~~~v~~l 216 (221)
.. ...|..||++|.+.+++..| ++++.|
T Consensus 892 ~~L~~~G~TVIvisHdl~~i~~a----DrIivL 920 (972)
T 2r6f_A 892 HRLVDNGDTVLVIEHNLDVIKTA----DYIIDL 920 (972)
T ss_dssp HHHHHTTCEEEEECCCHHHHTTC----SEEEEE
T ss_pred HHHHhCCCEEEEEcCCHHHHHhC----CEEEEE
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.012 Score=44.28 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988874
No 351
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=95.55 E-value=0.015 Score=51.31 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=46.8
Q ss_pred eEEEEEccCCCcHHHHH-HHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHHhcc--------CCcchhcccC---
Q 040890 82 SVVAVIDSYGFDKAVFA-AEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKIMMP--------QSALREIMGK--- 146 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~l~~--------~~~~~~~~~~--- 146 (221)
.-++|.|.+|+|||+|| ..+.+.. ...+ .++++ .+.....++.+++...-.. ..+.|.....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv-~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ--GQNV-ICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC--TTTC-EEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh--cCCc-EEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 44689999999999996 5777742 2222 23344 3334455555555442110 1111111111
Q ss_pred -CHHHHHHHHHHHhCCceEEEEEeCCC
Q 040890 147 -GFRQRKTALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 147 -~~~~l~~~l~~~L~~kr~LlVlDdv~ 172 (221)
.--...+.+++ .++..||++||+.
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 12233344444 5899999999984
No 352
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.55 E-value=0.017 Score=44.93 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=29.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE-eCcCChHHHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV-SANLDPYVILDNILK 132 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-s~~~~~~~~~~~il~ 132 (221)
..|+|-|.-|+||||+++.+.+. ....++....- +.....-+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVIMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEEEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEEEeeCCCCChHHHHHHHHHh
Confidence 46888999999999999998874 33344443322 222223344444443
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.55 E-value=0.0081 Score=43.68 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999988764
No 354
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.54 E-value=0.0067 Score=44.40 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
No 355
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.53 E-value=0.016 Score=48.60 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=21.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999999988753
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.53 E-value=0.018 Score=46.25 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 68 KELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 68 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.++.+.+.........|+++|..|+|||||...+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444443334567889999999999999998864
No 357
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.52 E-value=0.018 Score=46.41 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+.++...+.........|.++|.+|+|||||...+++.
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33444444444434567889999999999999998864
No 358
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.51 E-value=0.014 Score=50.56 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+++|+|+.|+|||||.+.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998876
No 359
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.51 E-value=0.015 Score=43.08 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999988763
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.0076 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345789999999999999988764
No 361
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.51 E-value=0.008 Score=49.41 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhc
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999976654
No 362
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.51 E-value=0.0082 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999987765
No 363
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.49 E-value=0.0079 Score=50.06 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|.|+.|+||||||..+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999876
No 364
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0084 Score=43.96 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=19.7
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999998763
No 365
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.42 E-value=0.0056 Score=47.00 Aligned_cols=24 Identities=17% Similarity=-0.087 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...++|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999999988764
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.41 E-value=0.0087 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-|.++|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999988764
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.41 E-value=0.015 Score=51.58 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988763
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.41 E-value=0.0078 Score=45.33 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998764
No 369
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.38 E-value=0.0088 Score=44.69 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=20.2
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998864
No 370
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.38 E-value=0.013 Score=43.00 Aligned_cols=24 Identities=8% Similarity=-0.008 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999888754
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.38 E-value=0.009 Score=43.85 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-|.|+|.+|+|||||...+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998864
No 372
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.37 E-value=0.0063 Score=48.98 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
....|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998876
No 373
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.37 E-value=0.013 Score=48.36 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 67 LKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 67 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
++++.+.+. -.+++++|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 445555543 357899999999999999999873
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.0082 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=18.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 040890 83 VVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-|.++|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 368999999999999998875
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.33 E-value=0.0071 Score=51.31 Aligned_cols=111 Identities=13% Similarity=0.020 Sum_probs=56.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCC-cchhcccC-CHHHHHHHHH
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQS-ALREIMGK-GFRQRKTALH 156 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~-~~~~~~~~-~~~~l~~~l~ 156 (221)
-.+++|+|+.|+|||||++.+... +.. -...+.+ ......... -..+.... ..+ .... ......+.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~e~~~~~~----~~~v~~v~~q~~-~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVPELFLPDH----PNHVHLFYPSEA-KEEENAPVTAATLLR 246 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSSCCCCTTC----SSEEEEECC-----------CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCccccCcccc----CCEEEEeecCcc-ccccccccCHHHHHH
Confidence 367899999999999999999873 221 2334444 111110000 00000000 000 0000 1112345566
Q ss_pred HHhCCceEEEEEeCCCChHHHHHHhhhcCCCCCCeEEEEEcCChHH
Q 040890 157 DYLKNKRYLIVLEDVLTNEVRKYLGEALPDRHNGSRVLAMLTSNEI 202 (221)
Q Consensus 157 ~~L~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 202 (221)
..++...-.++++.+.....++. ...++.+..+ ++.|+.....
T Consensus 247 ~~l~~~pd~~l~~e~r~~~~~~~-l~~l~~g~~~--~l~t~H~~~~ 289 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGGEAYDF-INVAASGHGG--SITSCHAGSC 289 (361)
T ss_dssp HHTTSCCSEEEESCCCSTHHHHH-HHHHHTTCCS--CEEEEECSSH
T ss_pred HHHhcCCCEEEEcCchHHHHHHH-HHHHhcCCCe--EEEEECCCCH
Confidence 66766666788888877666664 4455544433 3555554443
No 376
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.32 E-value=0.12 Score=39.52 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 455789999999999999998864
No 377
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.0099 Score=43.47 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-|.++|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888764
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.29 E-value=0.011 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-..|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36688999999999999999876
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.29 E-value=0.0091 Score=43.60 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 380
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.28 E-value=0.0093 Score=43.43 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.5
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999888754
No 381
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.28 E-value=0.0089 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...++.|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999887
No 382
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.27 E-value=0.025 Score=49.94 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHH-HHHhcCcCCCCCCCe-EEEE---eCcCChHHHHHHHHHHhccCCcc-h-h
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFA-AEAYNSDYVKSYFHC-HAWV---SANLDPYVILDNILKIMMPQSAL-R-E 142 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv---s~~~~~~~~~~~il~~l~~~~~~-~-~ 142 (221)
.++.|.--.. -.-++|.|.+|+|||+|| ..+.+.. . -+. ++++ .+.....++.+++...-...... - .
T Consensus 152 aID~l~Pigr-GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGR-GQRELIIGDRQTGKTTIAIDTIINQK--G--QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBT-TCBCEEEECSSSCHHHHHHHHHHGGG--S--CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred eccccccccc-CCEEEEECCCCCCchHHHHHHHHHhh--c--CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3555543222 244689999999999996 5777732 2 232 2344 44445566666666532111000 0 0
Q ss_pred cccC-CHHH-----HHHHHHHHh--CCceEEEEEeCCC
Q 040890 143 IMGK-GFRQ-----RKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 143 ~~~~-~~~~-----l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
..+. .... ..-.+.+++ .++..||++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0011 1111 112334444 5899999999984
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.27 E-value=0.01 Score=43.46 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34789999999999999988764
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.24 E-value=0.01 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999888764
No 385
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.24 E-value=0.011 Score=52.59 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=29.8
Q ss_pred eeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 61 VMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 61 vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+.+-.+.+.+..-....+..+|.+.|+.|+||||+|+.+...
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHH
Confidence 34444444555543211234578999999999999999999874
No 386
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.24 E-value=0.0089 Score=49.37 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 040890 84 VAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~ 103 (221)
|+|+|.+|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999876
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.24 E-value=0.012 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566889999999999999998764
No 388
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.21 E-value=0.011 Score=44.35 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 040890 83 VVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 83 vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3689999999999999988764
No 389
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.20 E-value=0.012 Score=47.97 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46888899999999999977654
No 390
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.20 E-value=0.013 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|..|+|||||...+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999998875
No 391
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.18 E-value=0.012 Score=51.34 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=48.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCC--------CCCC-eEEEE---eCcCChHHHHHHHHHHhccCCc-c-hhcccC-
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVK--------SYFH-CHAWV---SANLDPYVILDNILKIMMPQSA-L-REIMGK- 146 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv---s~~~~~~~~~~~il~~l~~~~~-~-~~~~~~- 146 (221)
.-++|.|.+|+|||+|+..+.+..... ++=+ .++++ .+.-...++..++...-..... . -...+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 345788999999999999888754331 1111 33444 4445556666665542100000 0 000011
Q ss_pred CHHH-----HHHHHHHHhC---CceEEEEEeCCC
Q 040890 147 GFRQ-----RKTALHDYLK---NKRYLIVLEDVL 172 (221)
Q Consensus 147 ~~~~-----l~~~l~~~L~---~kr~LlVlDdv~ 172 (221)
.... ..-.+.++++ ++.+||++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111 1223455553 789999999984
No 392
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.18 E-value=0.014 Score=51.09 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=48.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCC--CCCeEEEE---eCcCChHHHHHHHHHHhcc--------CCcchhcccCCH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKS--YFHCHAWV---SANLDPYVILDNILKIMMP--------QSALREIMGKGF 148 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv---s~~~~~~~~~~~il~~l~~--------~~~~~~~~~~~~ 148 (221)
.-++|.|.+|+|||+|+..+.++..... .=+.++++ .+.....++..++...-.. ..+.|.....-.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 3456789999999999998887533311 11234444 4555566777777653111 011110000001
Q ss_pred HHHHHHHHHHhC---CceEEEEEeCC
Q 040890 149 RQRKTALHDYLK---NKRYLIVLEDV 171 (221)
Q Consensus 149 ~~l~~~l~~~L~---~kr~LlVlDdv 171 (221)
....-.+.++++ ++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111223444443 68999999996
No 393
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.17 E-value=0.012 Score=47.29 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.7
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999977654
No 394
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.16 E-value=0.016 Score=42.91 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 395
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.15 E-value=0.013 Score=49.37 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999998875
No 396
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.15 E-value=0.011 Score=43.20 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=18.0
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 040890 84 VAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~ 103 (221)
|.++|.+|+|||||...+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999988864
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.15 E-value=0.01 Score=44.53 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999988764
No 398
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.15 E-value=0.013 Score=43.41 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 399
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.14 E-value=0.01 Score=44.58 Aligned_cols=23 Identities=9% Similarity=-0.200 Sum_probs=19.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 400
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.13 E-value=0.011 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 445789999999999999988754
No 401
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.12 E-value=0.013 Score=45.27 Aligned_cols=25 Identities=4% Similarity=-0.044 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....|.++|.+|+|||||...+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3566889999999999999988764
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.12 E-value=0.011 Score=43.30 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.7
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999988754
No 403
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.12 E-value=0.096 Score=45.00 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 69 ELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 69 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++.|..-.. -.-++|.|.+|+|||+|+..+.+
T Consensus 164 raID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhcccccC-CceEEEecCCCCChhHHHHHHHH
Confidence 45566654332 34578999999999999988876
No 404
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.11 E-value=0.033 Score=47.23 Aligned_cols=25 Identities=4% Similarity=0.060 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
+..+++|+|.+|+|||||.+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4677999999999999999998874
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.11 E-value=0.0095 Score=46.25 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998866
No 406
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.10 E-value=0.012 Score=43.51 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999988753
No 407
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.09 E-value=0.01 Score=45.43 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=19.5
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.-|+++|.+|+|||||...+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998875
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.09 E-value=0.011 Score=43.14 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|..|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988753
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.09 E-value=0.023 Score=44.55 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...|.+.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999998773
No 410
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.09 E-value=0.016 Score=43.23 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 411
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.08 E-value=0.016 Score=43.29 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.8
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34789999999999999998764
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.07 E-value=0.011 Score=44.58 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999877653
No 413
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.06 E-value=0.012 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999988865
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.05 E-value=0.012 Score=43.51 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|..|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.0092 Score=52.35 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.+++|+|+.|+|||||++.+.+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999876
No 416
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.01 E-value=0.017 Score=42.96 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988753
No 417
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.01 E-value=0.013 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 418
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.00 E-value=0.013 Score=43.09 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 355789999999999999988753
No 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.99 E-value=0.012 Score=49.69 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 578999999999999999999884
No 420
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.99 E-value=0.014 Score=51.97 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 421
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.98 E-value=0.014 Score=43.12 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999988753
No 422
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.97 E-value=0.042 Score=48.49 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=51.3
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHH-HHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHHHHHhcc--------C
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFA-AEAYNSDYVKSYFHCHAWV---SANLDPYVILDNILKIMMP--------Q 137 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~il~~l~~--------~ 137 (221)
.++.|.--.. -.-++|.|..|+|||+|| ..+.+. ....+ .++++ .+.-.+.++.+++...-.. .
T Consensus 152 aID~l~Pigr-GQR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv-~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGR-GQRELIIGDRQTGKTALAIDAIINQ--RDSGI-KCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBT-TCBCEEEESSSSSHHHHHHHHHHTT--SSSSC-EEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eecccccccc-CCEEEeecCCCCCcchHHHHHHHhh--ccCCc-eEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4555543222 234678999999999996 567762 22222 23455 4444556666665543111 1
Q ss_pred CcchhcccC----CHHHHHHHHHHHhCCceEEEEEeCCC
Q 040890 138 SALREIMGK----GFRQRKTALHDYLKNKRYLIVLEDVL 172 (221)
Q Consensus 138 ~~~~~~~~~----~~~~l~~~l~~~L~~kr~LlVlDdv~ 172 (221)
.+.|..... .-..+.+.+++ .++..||++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 111100000 11122334443 6899999999984
No 423
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.97 E-value=0.013 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 424
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.95 E-value=0.014 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 455789999999999999988764
No 425
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.94 E-value=0.013 Score=46.15 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEEeCcCChHHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWVSANLDPYVILDNILK 132 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wvs~~~~~~~~~~~il~ 132 (221)
+.-.++.|.|.+|+|||+||.++..+ .....-...++++-..+...+...+..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccCCHHHHHHHHHH
Confidence 34578899999999999999775432 111112344555666666666665543
No 426
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.94 E-value=0.013 Score=44.47 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999988763
No 427
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.94 E-value=0.012 Score=51.13 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=20.9
Q ss_pred ceE--EEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSV--VAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~v--i~I~G~gGiGKTtLA~~v~~~ 104 (221)
..+ ++|+|..|+|||||.+.++..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 355 899999999999999998763
No 428
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.92 E-value=0.013 Score=44.22 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345789999999999999888764
No 429
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.90 E-value=0.014 Score=43.39 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.5
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888753
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.89 E-value=0.015 Score=44.21 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 431
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.89 E-value=0.015 Score=44.24 Aligned_cols=23 Identities=4% Similarity=0.049 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..-|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44578999999999999997776
No 432
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.88 E-value=0.012 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~ 102 (221)
..-|.|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999885
No 433
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.88 E-value=0.014 Score=44.11 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 434
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.87 E-value=0.03 Score=48.85 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=27.8
Q ss_pred ceeeehhhHHHHHH----HHhcCCCCceEEEEEccCCCcHHHHHHHHhc
Q 040890 59 RCVMLLEDLKELLN----QLIEGPPQLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 59 ~~vG~~~~~~~l~~----~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+-+...+.++.+. .+.... ..+.|.|.+|+||||++..+..
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 34444444444444 444322 3888999999999999988775
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.86 E-value=0.015 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=20.3
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 8999999999999999998864
No 436
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.85 E-value=0.014 Score=43.26 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999888764
No 437
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.85 E-value=0.022 Score=42.89 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.85 E-value=0.014 Score=43.93 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|+|+|..|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998875
No 439
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.82 E-value=0.016 Score=44.13 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 440
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.81 E-value=0.012 Score=43.89 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...-|.|+|.+|+|||||...+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356678999999999999998875
No 441
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.015 Score=43.12 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.++|..|+|||||...+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 445789999999999999988764
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.80 E-value=0.015 Score=43.19 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=19.7
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 44779999999999999988764
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.80 E-value=0.02 Score=43.55 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999988764
No 444
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.016 Score=45.76 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|+++|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567899999999999999998874
No 445
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.78 E-value=0.016 Score=47.75 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567999999999999999988764
No 446
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.015 Score=44.07 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988764
No 447
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.017 Score=43.75 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 455789999999999999988764
No 448
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.75 E-value=0.017 Score=48.99 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=21.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+++|+|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 57899999999999999999874
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.74 E-value=0.024 Score=43.41 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.++|.+|+|||||...+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 455789999999999999888754
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.73 E-value=0.017 Score=43.28 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSD 105 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~ 105 (221)
..-|.|+|.+|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4667899999999999999988643
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.73 E-value=0.011 Score=43.88 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=19.6
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 44789999999999999988764
No 452
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.041 Score=41.20 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|..|+|||||...+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 466789999999999999998853
No 453
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.73 E-value=0.016 Score=44.25 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456789999999999999998764
No 454
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.72 E-value=0.016 Score=46.15 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..-++|.|++|+||||+|+.+.+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999998876
No 455
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.71 E-value=0.01 Score=53.67 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=33.9
Q ss_pred CCceeeehhhHHHHHHHHhcCCC---------CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPP---------QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.+.++|.+...+.+.-.|..+.. +..-+.++|++|+|||+||+.+.+.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 46789998876666555544310 0114778999999999999998873
No 456
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.70 E-value=0.02 Score=43.17 Aligned_cols=25 Identities=8% Similarity=-0.066 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|..|+|||||...+.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4667889999999999999998764
No 457
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.69 E-value=0.018 Score=43.75 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 455789999999999999988764
No 458
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.016 Score=43.70 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345789999999999999988763
No 459
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.68 E-value=0.016 Score=44.89 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 460
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.016 Score=43.70 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345789999999999999988763
No 461
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.67 E-value=0.037 Score=48.91 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHhcCCCCceEEEEEccCCCcHHHHH-HHHhcCcCC----CCCCC-eEEEE---eCcCChHHHHHHHHHHhcc----
Q 040890 70 LLNQLIEGPPQLSVVAVIDSYGFDKAVFA-AEAYNSDYV----KSYFH-CHAWV---SANLDPYVILDNILKIMMP---- 136 (221)
Q Consensus 70 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv---s~~~~~~~~~~~il~~l~~---- 136 (221)
.++.|.--.. -.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++ .+.....++.+.+...-..
T Consensus 152 aID~l~Pigr-GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGR-GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBT-TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eecccccccc-CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4555543222 244678999999999995 567663221 11233 24444 4444556666666652111
Q ss_pred ----CCcchhcccCCHHHHHHHHHHHh--CCceEEEEEeCCC
Q 040890 137 ----QSALREIMGKGFRQRKTALHDYL--KNKRYLIVLEDVL 172 (221)
Q Consensus 137 ----~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LlVlDdv~ 172 (221)
..+.|.....-.....-.+.+++ .++..||++||+.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11111000000001112334444 5899999999984
No 462
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.64 E-value=0.018 Score=43.91 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=18.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999855443
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.64 E-value=0.034 Score=41.69 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..--|.|+|.+|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998653
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.64 E-value=0.019 Score=43.20 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988764
No 465
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.63 E-value=0.024 Score=44.20 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 466
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.63 E-value=0.019 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 467
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.017 Score=44.42 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988754
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.63 E-value=0.018 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999988764
No 469
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.63 E-value=0.017 Score=44.53 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.62 E-value=0.017 Score=43.48 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999988754
No 471
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.62 E-value=0.017 Score=44.36 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999988764
No 472
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.61 E-value=0.024 Score=44.14 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|+|+|+.|+||+|+|..+-+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999987755
No 473
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.60 E-value=0.022 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998764
No 474
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.60 E-value=0.017 Score=43.81 Aligned_cols=24 Identities=4% Similarity=-0.111 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 455889999999999999998653
No 475
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.60 E-value=0.039 Score=47.82 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=33.9
Q ss_pred eeeehhhHHHHHHHHhcC---------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 60 CVMLLEDLKELLNQLIEG---------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 60 ~vG~~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
=.|.++-++.+.+.+... .....-++|+|.+|+|||||.+.+...
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 357777778887777531 123457899999999999999998874
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.59 E-value=0.017 Score=50.31 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.-..++|+|.+|+|||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999873
No 477
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.58 E-value=0.02 Score=50.23 Aligned_cols=23 Identities=4% Similarity=0.060 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..+|.++|+.|+||||+++.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999876
No 478
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.58 E-value=0.018 Score=43.52 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 479
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.58 E-value=0.018 Score=43.45 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.57 E-value=0.024 Score=44.84 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCcHHHHHHHHhcC
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....|.+.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999998873
No 481
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.56 E-value=0.017 Score=49.98 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 040890 84 VAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 84 i~I~G~gGiGKTtLA~~v~~~ 104 (221)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999874
No 482
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.56 E-value=0.018 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 483
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.55 E-value=0.019 Score=42.94 Aligned_cols=24 Identities=8% Similarity=-0.065 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 355789999999999999998763
No 484
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.54 E-value=0.02 Score=44.26 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 355789999999999999988763
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.53 E-value=0.025 Score=41.58 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=18.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHh
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAY 102 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~ 102 (221)
..+..|+|+.|+|||||..+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998764
No 486
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.53 E-value=0.019 Score=43.20 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|..|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988753
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.019 Score=43.12 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred eEEEEEccCCCcHHHHHHHHhcC
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
--|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988764
No 488
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.50 E-value=0.037 Score=49.52 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=31.2
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE---eCcCChHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV---SANLDPYVILDNI 130 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---s~~~~~~~~~~~i 130 (221)
.-++|.|..|+|||+|+..+.+.. +-+.++++ .+.....++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 557899999999999999987632 22456666 4444555666654
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.49 E-value=0.055 Score=54.42 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=55.1
Q ss_pred CCceEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHHHhccCCcchhcccC-CHHHHHHHH
Q 040890 79 PQLSVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILKIMMPQSALREIMGK-GFRQRKTAL 155 (221)
Q Consensus 79 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l 155 (221)
+.-++|-|+|+.|+||||||.++... .+..=..++|+ ....+.. .++.++...+.-.-... ..++.++.+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 44589999999999999999887752 22233567788 4444543 26666654322111112 456667777
Q ss_pred HHHhC-CceEEEEEeCCC
Q 040890 156 HDYLK-NKRYLIVLEDVL 172 (221)
Q Consensus 156 ~~~L~-~kr~LlVlDdv~ 172 (221)
...++ +.--+||+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 66664 445599999874
No 490
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.49 E-value=0.027 Score=50.07 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=19.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
..++|+|+.|+|||||++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999876
No 491
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.48 E-value=0.02 Score=43.62 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|..|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 466789999999999999988764
No 492
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.017 Score=43.45 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcCc
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNSD 105 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~~ 105 (221)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3557899999999999999987643
No 493
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.46 E-value=0.02 Score=43.75 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988764
No 494
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.45 E-value=0.022 Score=51.27 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCcHHHHHHHHhc
Q 040890 80 QLSVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 80 ~~~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
...+|.|.|++|+||||+|+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 495
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.44 E-value=0.016 Score=49.14 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=25.3
Q ss_pred CCceeeehhhHHHHHHHHhcCCCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEGPPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
....+|...--..........+.. --|+|+|.+|+|||||...++..
T Consensus 14 ~~~~v~~~~l~~~~~~k~~~~~~~-~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKSVKKGFE-FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -------CCHHHHHHTHHHHHCCE-ECEEECCCTTSCHHHHHHHHTTC
T ss_pred CCceEEeccchHHhCCeeecCCCC-EEEEEEcCCCCCHHHHHHHHhCC
Confidence 344566554444443322222222 33589999999999999998764
No 496
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.41 E-value=0.03 Score=43.85 Aligned_cols=50 Identities=8% Similarity=-0.060 Sum_probs=30.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhcCcCCCCCCCeEEEE--eCcCChHHHHHHHHH
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYNSDYVKSYFHCHAWV--SANLDPYVILDNILK 132 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv--s~~~~~~~~~~~il~ 132 (221)
..|.+.|+.|+||||+++.+.+.... ..+....+. +.....-+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57889999999999999998874221 223233444 222223455555554
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.021 Score=43.74 Aligned_cols=24 Identities=8% Similarity=0.002 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 498
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.34 E-value=0.022 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=17.9
Q ss_pred eEEEEEccCCCcHHHHHHHHhc
Q 040890 82 SVVAVIDSYGFDKAVFAAEAYN 103 (221)
Q Consensus 82 ~vi~I~G~gGiGKTtLA~~v~~ 103 (221)
-.|.+.|.||+||||+|..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3467889999999999876655
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.022 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCcHHHHHHHHhcC
Q 040890 81 LSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 81 ~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
.--|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988764
No 500
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.32 E-value=0.026 Score=52.91 Aligned_cols=48 Identities=19% Similarity=0.017 Sum_probs=36.1
Q ss_pred CCceeeehhhHHHHHHHHhcC-----------CCCceEEEEEccCCCcHHHHHHHHhcC
Q 040890 57 KERCVMLLEDLKELLNQLIEG-----------PPQLSVVAVIDSYGFDKAVFAAEAYNS 104 (221)
Q Consensus 57 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 104 (221)
-.+++|.+...+.|.+.+... -.....+.++|++|+||||||+.+.+.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 356788888888887766421 023455789999999999999999873
Done!