BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040894
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 119/172 (69%), Gaps = 4/172 (2%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
GPGSGK TQC+ I + G+ HLSAGDLL E +SGS DG+MI K G++VPS + VKL
Sbjct: 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKL 73
Query: 61 LQKAMQESQNKNFVIDGFPRNEENLSAAENILK--IEPNAVLVFDCSEEEMTRRILSRNQ 118
L+ A+ +Q KNF++DGFPRNEEN ++ E +K ++ VL FDC EE MT+R+L R +
Sbjct: 74 LKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133
Query: 119 --GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
GR DD I++IKKR N ++ T VI++Y+ KV+ I A R + EV++++
Sbjct: 134 SSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDV 185
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 116/178 (65%), Gaps = 10/178 (5%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEGKLVPSEIIVK 59
GPG+GK TQC++I + G+ HLSAG+LL E ++ S G++I +Y KEGK+VP EI +
Sbjct: 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITIS 70
Query: 60 LLQKAMQES-----QNKNFVIDGFPRNEENLSAAENIL--KIEPNAVLVFDCSEEEMTRR 112
LL++ M ++ Q F+IDGFPRN++NL + K + + VL FDC+ E R
Sbjct: 71 LLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIER 130
Query: 113 ILSRNQ--GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
L R + GR DD ++++KR+ Y +ST P+I+ Y GKV+KIDA + ++EVFDE+
Sbjct: 131 CLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
GPGSGK TQC KI + G+ HLS GDLL AE SGS GKM+ E ++G+LVP E ++ +
Sbjct: 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDM 76
Query: 61 LQKAM--QESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQ 118
L+ AM + +K F+IDG+PR + E + +P +L D E MT+R+L R +
Sbjct: 77 LRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIG-QPTLLLYVDAGPETMTKRLLKRGE 135
Query: 119 --GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
GRVDD +TIKKRL Y ++T PVI +Y +G VRK++A +++VF ++
Sbjct: 136 TSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 7/175 (4%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE-AESGSNDGKMIREYKKEGKLVPSEIIVK 59
GPG+GK TQC K+ K F HLSAGDLL AE +GS G++I+ KEG++VP EI +
Sbjct: 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLA 82
Query: 60 LLQKAMQESQNKN---FVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116
LL+ A+ ++ N F+IDGFPR + + E + +E +L FDC E+ M R+L R
Sbjct: 83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLER 141
Query: 117 NQ--GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169
+ GR DD I++IKKR N + E+++PVI Y+ +K KV ++ R +E+V+ +++
Sbjct: 142 GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 196
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 5/172 (2%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
GPGSGK TQC KI + G+ HLS GDLL +E SGS GK + E ++G+LVP E ++ +
Sbjct: 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDM 76
Query: 61 LQKAMQESQN--KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQ 118
L+ AM N K F+IDG+PR + E + +P +L D E MT+R+L R +
Sbjct: 77 LRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKRGE 135
Query: 119 --GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
GRVDD +TIKKRL Y ++T PVI +Y +G VRK++A ++ VF ++
Sbjct: 136 TSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQV 187
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 109/173 (63%), Gaps = 7/173 (4%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
GPGSGK TQC K+ + F HLS+GDLL AE +SGS GK ++ + G+LVP E+++ L
Sbjct: 37 GPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLAL 96
Query: 61 LQKAMQESQNKN--FVIDGFPRNEENLSAAENILKIEPN-AVLVFDCSEEEMTRRILSRN 117
L++AM + +KN F+IDG+PR + E ++ P V+ FD SEE M +R+L R
Sbjct: 97 LKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLKRA 154
Query: 118 Q--GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
+ RVDD +TI KR ++E T PVI +Y + KV IDA ++ +FD++
Sbjct: 155 ETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
GPGSGK TQC K+ + GF HLS G+LL E S S K+IR+ + G LVPS I+++L
Sbjct: 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLEL 79
Query: 61 LQKAMQES--QNKNFVIDGFPRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRIL--S 115
L++AM S + F+IDG+PR E E +I +P V+ DCS + MT R+L S
Sbjct: 80 LKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMS 137
Query: 116 RNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168
R+ VDD TI KRL Y +++PVI YY +K ++ KI+A E+VF ++
Sbjct: 138 RSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQL 190
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 27/192 (14%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ ++AK GF H+S GD+L + G+ GK +EY + G+LVP ++I+ L+
Sbjct: 9 PGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68
Query: 62 QKAMQESQNKNFVIDGFPRNEENLSAAENILK---IEPNAVLVFDCSEEEMTRRILSRNQ 118
++ ++ N + DGFPR + A + +L+ ++ + VL+F+ +E + R+ R
Sbjct: 69 EEVF--PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRI 126
Query: 119 G----------------------RVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156
R DDK + IKKRL VY E T P+I YY KG +R ID
Sbjct: 127 NPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIID 186
Query: 157 AGRPIEEVFDEI 168
A +P+EEV+ ++
Sbjct: 187 ASKPVEEVYRQV 198
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 9/173 (5%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ S++A+ LGF+ LS GD+L G+ G+ +R + G LVP ++I++L+
Sbjct: 13 PGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELI 72
Query: 62 QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVL---VFDCSEEEMTRRILSRN- 117
++ + E + DGFPR A + +L +L + + EEE+ RRIL R
Sbjct: 73 REELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE 128
Query: 118 -QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169
+GR DD +T+++RL VY E T P++ YY ++G ++++D +EV+ I+
Sbjct: 129 LEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIR 181
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ K+A+ LG +S G+L E G+ G + Y G LVPS++ +L+
Sbjct: 29 PGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 88
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENILK---IEPNAVLVFDCSEEEMTRRILSRN 117
+ N F++DG+PR+ E A +L+ + +AVL F SEE + R+ +
Sbjct: 89 DDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL--KG 146
Query: 118 QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVF 165
+GR DD D I R+ VY + T P++ YY + +++ +DA ++EVF
Sbjct: 147 RGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 192
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ K+A+ LG +S G+L E G+ G + Y G LVPS++ +L+
Sbjct: 9 PGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 68
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENILK---IEPNAVLVFDCSEEEMTRRILSRN 117
+ N F++DG+PR+ E A +L+ + +AVL F SEE + R+ +
Sbjct: 69 DDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL--KG 126
Query: 118 QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVF 165
+GR DD D I R+ VY + T P++ YY + +++ +DA ++EVF
Sbjct: 127 RGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 172
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 27/177 (15%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
PGSGK T S+I KH +HLS+GDLL G+ G + + + +GKL+P +++ +L
Sbjct: 14 APGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRL 73
Query: 61 LQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEP--NAVLVFDCSEEEMTRRILSRNQ 118
+ ++ N+++DGFPR A + +I+ N + F+ ++ +T R +
Sbjct: 74 VLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPGS 133
Query: 119 GRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG 150
GRV DD+ +T+ KRL Y T PV+ YY KG
Sbjct: 134 GRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKG 190
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
P SGK TQC I H+SAGDLL AE +GS +GK +E+ ++G+LVP EI+V +
Sbjct: 13 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNM 72
Query: 61 LQKAMQE--SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQ 118
+++ +++ +Q +++DG+PR+ A E L+I P+ ++ D +E + R++ R
Sbjct: 73 VKERLRQPDAQENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRL 131
Query: 119 GRVDDKIDTIK 129
V KI +K
Sbjct: 132 DPVTGKIYHLK 142
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 36/198 (18%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ I + G +S GD+L A +SGS GK ++ GKLV E+++ L+
Sbjct: 9 PGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALV 68
Query: 62 -QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--- 117
++ QE F++DGFPR A + I + VL FD +E + RI+ R
Sbjct: 69 KERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHA 127
Query: 118 -QGRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG- 150
GRV DD+ +T++KRL Y + T P+I YYS +
Sbjct: 128 PSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAE 187
Query: 151 ----KVRKIDAGRPIEEV 164
K K+D +P+ EV
Sbjct: 188 AGNTKYAKVDGTKPVAEV 205
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 36/198 (18%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ I + G +S GD+L A +SGS GK ++ GKLV E+++ L+
Sbjct: 9 PGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALV 68
Query: 62 -QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--- 117
++ QE F++DGFPR A + I + VL FD +E + RI+ R
Sbjct: 69 KERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHA 127
Query: 118 -QGRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG- 150
GRV DD+ +T++KRL Y + T P+I YYS +
Sbjct: 128 PSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAE 187
Query: 151 ----KVRKIDAGRPIEEV 164
K K+D +P+ EV
Sbjct: 188 AGNTKYAKVDGTKPVAEV 205
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 33/200 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ K+AK+ HL+ GD+L A SGS GK ++ GKLV E++++L+
Sbjct: 25 PGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELI 84
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENIL---KIEPNAVLVFDCSEEEMTRRILSR- 116
+K ++ KN F++DGFPR ++++ K + ++V+ F + + RRI R
Sbjct: 85 EKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144
Query: 117 ---NQG-------------------------RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
G R DD +K RL Y T P++ YYS
Sbjct: 145 IHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSK 204
Query: 149 KGKVRKIDAGRPIEEVFDEI 168
+G IDA + + VF I
Sbjct: 205 RGIHSAIDASQTPDVVFASI 224
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
PGSGK T S+I H +HLS+GDLL G+ G + + + +GKL+P +++ +L
Sbjct: 15 APGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRL 74
Query: 61 LQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEP--NAVLVFDCSEEEMTRRILSRNQ 118
++ ++++DGFPR A + +I+ N + F+ ++ +T R +
Sbjct: 75 ALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPAS 134
Query: 119 GRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG 150
GRV DDK +T+ KRL Y + T PV+ YY KG
Sbjct: 135 GRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKG 191
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 33/200 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + H+S GD+ A ++G+ G + + +G LVP E+ + ++
Sbjct: 9 PGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAAENILKI---EPNAVLVFDCSEEEMTRRILSR- 116
+ + ++ K F++DGFPR A +++L + + VL +EE+ +R+ R
Sbjct: 69 HERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW 128
Query: 117 ------------------------NQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
+ G R+DDK +T+K RL+V + T P++++YS
Sbjct: 129 ICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQ 188
Query: 149 KGKVRKIDAGRPIEEVFDEI 168
KG ++ ID + I++VF +I
Sbjct: 189 KGVLKDIDGQQDIKKVFVDI 208
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
P +GK TQ I + G +S GD+L A +SGS GK ++ GKLV E+++ L+
Sbjct: 9 PVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALV 68
Query: 62 -QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--- 117
++ QE F++DGFPR A + I + VL FD +E + RI+ R
Sbjct: 69 KERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHA 127
Query: 118 -QGRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG- 150
GRV DD+ +T++KRL Y + T P+I YYS +
Sbjct: 128 PSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAE 187
Query: 151 ----KVRKIDAGRPIEEV 164
K K+D +P+ EV
Sbjct: 188 AGNTKYAKVDGTKPVAEV 205
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ ++A++ HL+ GD+L A SGS GK ++ GKLV E++V+L+
Sbjct: 25 PGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELI 84
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENIL---KIEPNAVLVFDCSEEEMTRRILSR- 116
+K ++ KN F++DGFPR ++++ K + ++V+ F + + RRI R
Sbjct: 85 EKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144
Query: 117 ---NQG-------------------------RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
G R DD +K RL Y T P+I YY
Sbjct: 145 IHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRK 204
Query: 149 KGKVRKIDAGRPIEEVFDEI 168
+G IDA + + VF I
Sbjct: 205 RGIHSAIDASQTPDVVFASI 224
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 27/181 (14%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PGSGK T C +IA++ G +HLS+G L ++ + G+M ++Y ++ LVP +I +L+
Sbjct: 36 PGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLM 95
Query: 62 QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVL--VFDCSEEEMTRRILSRNQG 119
++ + +++++DGFPR A + I +++ L F+ ++ ++RR + G
Sbjct: 96 MSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG 155
Query: 120 RV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154
RV DDK + + RL Y + PVI Y S+G + +
Sbjct: 156 RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQ 215
Query: 155 I 155
Sbjct: 216 F 216
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ KI G H+S GD+ A + G+ G ++Y G LVP E+ + ++
Sbjct: 9 PGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIV 68
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENILK---IEPNAVLVFDCSE----EEMTRRI 113
++ + + +N F++DGFPR A E +L + + V+ D + E +T R
Sbjct: 69 RERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRR 128
Query: 114 LSRNQG-------------------------RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
+ RN G R DD T+ RL V + P++++Y
Sbjct: 129 ICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQ 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG +R I+ + +E+VF +I+
Sbjct: 189 KGYLRNINGEQDMEKVFADIR 209
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 36/196 (18%)
Query: 4 SGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL-Q 62
+GK TQ I + G +S GD+L A +SGS GK ++ GKLV E+++ L+ +
Sbjct: 11 AGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKE 70
Query: 63 KAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q 118
+ QE F++DGFPR A + I + VL FD +E + RI+ R
Sbjct: 71 RIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPS 129
Query: 119 GRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKG--- 150
GRV DD+ +T++KRL Y + T P+I YYS +
Sbjct: 130 GRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAG 189
Query: 151 --KVRKIDAGRPIEEV 164
K K+D +P+ EV
Sbjct: 190 NTKYAKVDGTKPVAEV 205
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 33/197 (16%)
Query: 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKL 60
PGSGK TQ + K + HLS GDLL AE + G I+ EGKLV ++++ L
Sbjct: 37 APGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSL 96
Query: 61 LQKAMQESQ-NKNFVIDGFPRNEENLSAAENIL---KIEPNAVLVFDCSEEEMTRRI--- 113
+ + ++ Q K F++DG+PRN + +L + + + V F+ +E + RI
Sbjct: 97 VDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGR 156
Query: 114 -LSRNQGRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYS 147
+ + GR+ DD D +KKRL V+ T P+I+YY
Sbjct: 157 LIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYK 216
Query: 148 SKGKVRKIDAGRPIEEV 164
+K + +DA +P ++
Sbjct: 217 NKNLLINLDATQPANDL 233
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 39/204 (19%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PGSGK TQC I K G HLS GD+L ++G+ G + + G V EI++ L+
Sbjct: 14 PGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLV 73
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENILKI------EPNAVLVFDCSEEEMTRRIL 114
++ N FV+DGFPR + AE + KI +V+ F+ + E+ RI
Sbjct: 74 KEKFDLGVCVNGFVLDGFPR---TIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130
Query: 115 SR----NQGRV-------------------------DDKIDTIKKRLNVYSESTLPVINY 145
R GR+ DD + +K RL+V+ + T P++ +
Sbjct: 131 GRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKF 190
Query: 146 YSSKGKVRKIDAGRPIEEVFDEIK 169
Y G +++++A P +EV ++IK
Sbjct: 191 YEDLGILKRVNAKLPPKEVTEQIK 214
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 27/181 (14%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PGSGK T C +IA++ G +HLS+G L ++ + G+M ++Y ++ LVP +I +L+
Sbjct: 14 PGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLM 73
Query: 62 QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVL--VFDCSEEEMTRRILSRNQG 119
++ + +++++DGFPR A + I +++ L F+ ++ ++RR + G
Sbjct: 74 MSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG 133
Query: 120 RV-------------------------DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154
RV DDK + + R Y + PVI Y S+G + +
Sbjct: 134 RVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGVLHQ 193
Query: 155 I 155
Sbjct: 194 F 194
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 37/202 (18%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + G+ G + + +G LVP E+ + ++
Sbjct: 9 PGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIV 68
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENIL-----KIEPNAVLVFDCSEEEMTRRILS 115
++ + +S N F++DGFPR A + +L KIE VL +EE+ R+
Sbjct: 69 RERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIE--HVLNIQVEKEELIARLTG 126
Query: 116 RN-----------------------------QGRVDDKIDTIKKRLNVYSESTLPVINYY 146
R R DD DT+ RL V T P++ +Y
Sbjct: 127 RRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAFY 186
Query: 147 SSKGKVRKIDAGRPIEEVFDEI 168
SK + I+ + I++VF ++
Sbjct: 187 DSKEVLVNINGQKDIKDVFKDL 208
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ + I + G +S GD L A ++G+ G + Y EGKLVP +I+ L+
Sbjct: 17 PGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLIIGLV 76
Query: 62 QKAMQESQNKN-FVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--- 117
++ ++E+ N ++ DGFPR A + + + VL D E+ R R
Sbjct: 77 KERLKEADCANGYLFDGFPRTIAQADAXKE-AGVAIDYVLEIDVPFSEIIERXSGRRTHP 135
Query: 118 -QGRV-------------------------DDKIDTIKKRLNVYSESTLPVINYYS 147
GR DDK +T+KKRL+VY T P+I YY
Sbjct: 136 ASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYG 191
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLANVNGQRDIQDVYADVK 209
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLANVNGQRDIQDVYADVK 209
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLANVNGQRDIQDVYADVK 209
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLVNVNGQRDIQDVYADVK 209
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ + I++V+ ++K
Sbjct: 189 KGYLANVNGQQDIQDVYADVK 209
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLANVNGQRDIQDVYADVK 209
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAMQESQ-NKNFVIDGFPRN---EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN 117
++ + +S + F++DGFPR E L + + V+ +EE+ R+ R
Sbjct: 69 RERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRR 128
Query: 118 -----------------------------QGRVDDKIDTIKKRLNVYSESTLPVINYYSS 148
R DD +T+ KRL V + T P++ +Y S
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDS 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
K + ++ + I++VF ++K
Sbjct: 189 KEVLVNVNGQQDIQDVFADVK 209
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK T +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ IE + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++YS
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ R I++V+ ++K
Sbjct: 189 KGYLANVNGQRDIQDVYADVK 209
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ + + HL+ GD+L ++ G+ G ++ +G LV +I+V ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 QKAMQESQ--NKNFVIDGFPRNEENLSAAENILK-------------------------- 93
+ + + F++DGFPR + +LK
Sbjct: 73 KDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR 132
Query: 94 -IEPNAVL----VFDCSEEEMTRRILSRNQ-GRVDDKIDTIKKRLNVYSESTLPVINYYS 147
I P + +F+ +E+M + R DD D +KKRL Y T P++++Y
Sbjct: 133 LIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYK 192
Query: 148 SKGKVRKIDAGRPIEEVFDEI 168
G +DA +P V+ +I
Sbjct: 193 KTGIWAGVDASQPPATVWADI 213
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ + + HL+ GD+L ++ G+ G ++ +G LV +I+V ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 QKAMQESQ--NKNFVIDGFPRNEENLSAAENILK-------------------------- 93
+ + + F++DGFPR + +LK
Sbjct: 73 KDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR 132
Query: 94 -IEPNAVL----VFDCSEEEMTRRILSRNQ-GRVDDKIDTIKKRLNVYSESTLPVINYYS 147
I P + +F+ +E+M + R DD D +KKRL Y T P++++Y
Sbjct: 133 LIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYK 192
Query: 148 SKGKVRKIDAGRPIEEVF 165
G +DA +P V+
Sbjct: 193 KTGIWAGVDASQPPATVW 210
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 97/201 (48%), Gaps = 33/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ +I + G H+S GD+ A + + G + Y +G+LVP E+ + ++
Sbjct: 9 PGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 QKAM-QESQNKNFVIDGFPRNEENLSAA-----------ENILKIEPNAVLVFD------ 103
++ + ++ + F++DGFPR A + ++ I+ + ++ +
Sbjct: 69 KERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR 128
Query: 104 -CS----------EEEMTRRILSRNQG----RVDDKIDTIKKRLNVYSESTLPVINYYSS 148
CS T I ++ G R DD +T+ KRL V + T P++++Y
Sbjct: 129 ICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDE 188
Query: 149 KGKVRKIDAGRPIEEVFDEIK 169
KG + ++ + I++V+ ++K
Sbjct: 189 KGYLVNVNGQQDIQDVYADLK 209
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL 61
PG+GK TQ + + HL+ GD+L ++ G+ G ++ +G LV +I+V ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 QKAMQESQ--NKNFVIDGFPRNEENLSAAENILKIEPNAV---LVFDCSEEEMTRRILSR 116
+ + + F++ GFPR + +LK + + + +E + RI R
Sbjct: 73 KDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR 132
Query: 117 ----NQGR-------------------------VDDKIDTIKKRLNVYSESTLPVINYYS 147
GR DD D +KKRL Y T P++++Y
Sbjct: 133 LIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYK 192
Query: 148 SKGKVRKIDAGRPIEEVFDEI 168
G +DA +P V+ +I
Sbjct: 193 KTGIWAGVDASQPPATVWADI 213
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1 GP-GSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVK 59
GP GSGK TQ + + H+ +G + G+ GK +E+ G LVP +I +
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 60 LLQKAMQESQNKNFVIDGFPRN 81
++ + ++ +++DGFPRN
Sbjct: 67 MVLETLESKGKDGWLLDGFPRN 88
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1 GP-GSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVK 59
GP GSGK TQ + + H+ +G + G+ GK +E+ G LVP +I +
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 60 LLQKAMQESQNKNFVIDGFPRN 81
++ + ++ +++DGFPRN
Sbjct: 67 MVLETLESKGKDGWLLDGFPRN 88
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 2 PGSGKSTQCSKIAKHLG--FRHLSAGDLL-EAEAES------GSNDGKMIREYKKEGKLV 52
PG GK++ IAK LG F +S G + E+E G+ G++I+ KK GKL
Sbjct: 117 PGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLN 176
Query: 53 P 53
P
Sbjct: 177 P 177
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 1 GPGS-GKSTQCSKIAKHLGFRHLSAGDLLEA 30
GP S GKST IAK GF +L G + A
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 1 GPGSGKSTQCSKIAKHLGFR--HLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIV 58
G G GKS QC + + +G +SAG+L E+ + K+IR+ +E +EII
Sbjct: 44 GKGQGKSFQCELVFRKMGINPIMMSAGEL---ESGNAGEPAKLIRQRYREA----AEIIR 96
Query: 59 K 59
K
Sbjct: 97 K 97
>pdb|1DLA|A Chain A, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|B Chain B, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|C Chain C, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
pdb|1DLA|D Chain D, Novel Nadph-Binding Domain Revealed By The Crystal
Structure Of Aldose Reductase
Length = 314
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESG 35
GK T+ K+A LG+RH+ + + E E G
Sbjct: 24 GKVTEAVKVAIDLGYRHIDCAHVYQNENEVG 54
>pdb|1EKO|A Chain A, Pig Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1AH3|A Chain A, Aldose Reductase Complexed With Tolrestat Inhibitor
pdb|1AH4|A Chain A, Pig Aldose Reductase, Holo Form
Length = 315
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESG 35
GK T+ K+A LG+RH+ + + E E G
Sbjct: 25 GKVTEAVKVAIDLGYRHIDCAHVYQNENEVG 55
>pdb|1AH0|A Chain A, Pig Aldose Reductase Complexed With Sorbinil
Length = 316
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESG 35
GK T+ K+A LG+RH+ + + E E G
Sbjct: 26 GKVTEAVKVAIDLGYRHIDCAHVYQNENEVG 56
>pdb|2PD5|A Chain A, Human Aldose Reductase Mutant V47i Complexed With
Zopolrestat
pdb|2PD9|A Chain A, Human Aldose Reductase Mutant V47i Complexed With
Fidarestat
Length = 316
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHIYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDX|A Chain A, Human Aldose Reductase Double Mutant S302r-C303d
Complexed With Zopolrestat.
pdb|2PDY|A Chain A, Human Aldose Reductase Double Mutant S302r-C303d
Complexed With Fidarestat
Length = 316
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 3 GSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVP-SEIIVKLL 61
GSGKSTQ +A++L R +L+ E G+ G+ IR+ E ++ P +E+ + L
Sbjct: 10 GSGKSTQIQLLAQYLEKRGKKV--ILKREP-GGTETGEKIRKILLEEEVTPKAELFLFLA 66
Query: 62 QKAMQESQNKNFVIDGF 78
+ + ++ K ++ +G+
Sbjct: 67 SRNLLVTEIKQYLSEGY 83
>pdb|2PDM|A Chain A, Human Aldose Reductase Mutant S302r Complexed With
Zopolrestat.
pdb|2PDN|A Chain A, Human Aldose Reductase Mutant S302r Complexed With
Uracil- Type Inhibitor.
pdb|2PDP|A Chain A, Human Aldose Reductase Mutant S302r Complexed With Idd
393
Length = 316
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDQ|A Chain A, Human Aldose Reductase Mutant C303d Complexed With
Uracil- Type Inhibitor.
pdb|2PDU|A Chain A, Human Aldose Reductase Mutant C303d Complexed With
Idd393.
pdb|2PDW|A Chain A, Human Aldose Reductase Mutant C303d Complexed With
Fidarestat
Length = 316
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|1PWL|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With Nadp And Minalrestat
pdb|1PWM|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With Nadp And Fidarestat
pdb|1US0|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At 0.66 Angstrom
pdb|1T41|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With Nadp And Idd552
pdb|1X96|A Chain A, Crystal Structure Of Aldose Reductase With Citrates
Bound In The Active Site
pdb|1X97|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
2r4s (Stereoisomer Of Fidarestat, 2s4s)
pdb|1X98|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
2s4r (Stereoisomer Of Fidarestat, 2s4s)
pdb|1Z89|A Chain A, Human Aldose Reductase Complexed With Novel Sulfonyl-
Pyridazinone Inhibitor
pdb|1Z8A|A Chain A, Human Aldose Reductase Complexed With Novel Sulfonyl-
Pyridazinone Inhibitor
pdb|2I16|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At Temperature Of 15k
pdb|2I17|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594 At Temperature Of 60k
pdb|2DUX|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With Zopolrestat After 3 Days Soaking (3days_soaked_1)
pdb|2DUZ|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After 3 Days Soaking (3days_soaked_2)
pdb|2DV0|A Chain A, Human Aldose Reductase Complexed With Zopolrestat After
6 Days Soaking(6days_soaked_2)
pdb|2FZ8|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat At 1.48 A(1 Day Soaking).
pdb|2FZ9|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After Six Days Soaking.
pdb|2FZB|A Chain A, Human Aldose Reductase Complexed With Four Tolrestat
Molecules At 1.5 A Resolution.
pdb|2FZD|A Chain A, Human Aldose Reductase Complexed With Tolrestat At 1.08
A Resolution.
pdb|2HV5|A Chain A, Human Aldose Reductase Complexed With Inhibitor
Zopolrestat After Three Days Soaking (3days_soaked_3)
pdb|2HVN|A Chain A, Human Aldose Reductase-Zopolrestat Complex Obtained By
Cocrystallisation After One Day (1day_cocryst)
pdb|2HVO|A Chain A, Human Aldose Reductase-Zopolrestat Complex Obtained By
Cocrystallisation (10days_cocryst)
pdb|2IKG|A Chain A, Aldose Reductase Complexed With Nitrophenyl-Oxadiazol
Type Inhibitor At 1.43 A
pdb|2IKH|A Chain A, Human Aldose Reductase Complexed With
Nitrofuryl-oxadiazol Inhibitor At 1.55 A
pdb|2IKI|A Chain A, Human Aldose Reductase Complexed With Halogenated
Idd-type Inhibitor
pdb|2IKJ|A Chain A, Human Aldose Reductase Complexed With Nitro-Substituted
Idd- Type Inhibitor
pdb|2NVC|A Chain A, Human Aldose Reductase Complexed With Novel Naphtho[1,2-
D]isothiazole Acetic Acid Derivative (3)
pdb|2NVD|A Chain A, Human Aldose Reductase Complexed With Novel Naphtho[1,2-
D]isothiazole Acetic Acid Derivative (2)
pdb|2PEV|A Chain A, Complex Of Aldose Reductase With Nadp+ And
Simaltaneously Bound Competetive Inhibitors Fidarestat
And Idd594. Concentration Of Fidarestat In Soaking
Solution Exceeds Concentration Of Idd594.
pdb|2PF8|A Chain A, Complex Of Aldose Reductase With Nadp+ And
Simaltaneously Bound Competetive Inhibitors Fidarestat
And Idd594. Concentration Of Fidarestat In Soaking
Solution Is Equal To Concentration Of Idd594.
pdb|2PFH|A Chain A, Complex Of Aldose Reductase With Nadp+ And
Simaltaneously Bound Competetive Inhibitors Fidarestat
And Idd594. Concentration Of Fidarestat In Soaking
Solution Is Less Than Concentration Of Idd594.
pdb|2J8T|A Chain A, Human Aldose Reductase In Complex With Nadp And Citrate
At 0.82 Angstrom
pdb|2QXW|A Chain A, Perdeuterated Alr2 In Complex With Idd594
pdb|2PDG|A Chain A, Human Aldose Reductase With Uracil-Type Inhibitor At
1.42a.
pdb|3BCJ|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
2s4r (Stereoisomer Of Fidarestat, 2s4s) At 0.78 A
pdb|2PZN|A Chain A, The Crystallographic Structure Of Aldose Reductase
Idd393 Complex Confirms Leu300 As A Specificity
Determinant
pdb|3GHR|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. First Stage Of
Radiation Damage
pdb|3GHS|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Second Stage Of
Radiation Damage.
pdb|3GHT|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Third Stage Of
Radiation Damage.
pdb|3GHU|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Idd594. Investigation Of Global Effects Of
Radiation Damage On Protein Structure. Forth Stage Of
Radiation Damage.
pdb|3DN5|A Chain A, Aldose Reductase In Complex With Novel Biarylic
Inhibitor
pdb|3Q65|A Chain A, Human Aldose Reductase In Complex With Nadp+ In Space
Group P212121
pdb|3Q65|B Chain B, Human Aldose Reductase In Complex With Nadp+ In Space
Group P212121
pdb|3P2V|A Chain A, Novel Benzothiazepine Inhibitor In Complex With Human
Aldose Reductase
pdb|3U2C|A Chain A, Aldose Reductase In Complex With Nsaid-Type Inhibitor At
1.0 A Resolution
Length = 316
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|3LZ5|A Chain A, Human Aldose Reductase Mutant T113v Complexed With
Idd594
pdb|3M4H|A Chain A, Human Aldose Reductase Mutant T113v Complexed With
Idd388
pdb|3M0I|A Chain A, Human Aldose Reductase Mutant T113v In Complex With
Zopolrestat
pdb|3M64|A Chain A, Human Aldose Reductase Mutant T113v Complexed With
Idd393
pdb|3MC5|A Chain A, Human Aldose Reductase Mutant T113v In Complex With
Idd393 Crystallized In Spacegroup P1
Length = 316
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|3ONB|A Chain A, Bond Breakage And Relocation Of A Covalently Bound
Bromine Of Idd594 In A Complex With Har T113a Mutant
After Extensive Radiation Dose
pdb|3ONC|A Chain A, Bond Breakage And Relocation Of A Covalently Bound
Bromine Of Idd594 In A Complex With Har T113a Mutant
After Moderate Radiation Dose
Length = 315
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|3Q67|A Chain A, Human Aldose Reductase C298s Mutant In Complex With
Nadp+ In Space Group P212121
pdb|3Q67|B Chain B, Human Aldose Reductase C298s Mutant In Complex With
Nadp+ In Space Group P212121
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|3LQG|A Chain A, Human Aldose Reductase Mutant T113a Complexed With
Idd388
pdb|3LQL|A Chain A, Human Aldose Reductase Mutant T113a Complexed With Idd
594
pdb|3MB9|A Chain A, Human Aldose Reductase Mutant T113a Complexed With
Zopolrestat
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDK|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Sorbinil.
pdb|2PDL|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Tolrestat
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|1ABN|A Chain A, The Crystal Structure Of The Aldose Reductase Nadph
Binary Complex
Length = 315
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|3LD5|A Chain A, Human Aldose Reductase Mutant T113s Complexed With
Idd594
pdb|3LZ3|A Chain A, Human Aldose Reductase Mutant T113s Complexed With
Idd388
pdb|3LEN|A Chain A, Human Aldose Reductase Mutant T113s Complexed With
Zopolrestat
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|3LBO|A Chain A, Human Aldose Reductase Mutant T113c Complexed With
Idd594
pdb|3LEP|A Chain A, Human Aldose Reductase Mutant T113c In Complex With
Idd388
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDI|A Chain A, Human Aldose Reductase Mutant L300a Complexed With
Zopolrestat At 1.55 A.
pdb|2PDJ|A Chain A, Human Aldose Reductase Mutant L300a Complexed With
Idd393
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDF|A Chain A, Human Aldose Reductase Mutant L300p Complexed With
Zopolrestat.
pdb|2PDH|A Chain A, Human Aldose Reductase Mutant L300p Complexed With
Uracil- Type Inhibitor At 1.45 A
Length = 316
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2IS7|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Dichlorophenylacetic Acid
Length = 315
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|2IPW|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Dichlorophenylacetic Acid
pdb|2ISF|A Chain A, Crystal Structure Of C298a W219y Aldose Reductase
Complexed With Phenylacetic Acid
pdb|1AZ1|A Chain A, Alrestatin Bound To C298aW219Y MUTANT HUMAN ALDOSE
Reductase
pdb|1AZ2|A Chain A, Citrate Bound, C298aW219Y MUTANT HUMAN ALDOSE REDUCTASE
Length = 315
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|2R24|A Chain A, Human Aldose Reductase Structure
Length = 316
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|1EF3|A Chain A, Fidarestat Bound To Human Aldose Reductase
pdb|1EF3|B Chain B, Fidarestat Bound To Human Aldose Reductase
pdb|2INE|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Phenylacetic Acid
pdb|2INZ|A Chain A, Crystal Structure Of Aldose Reductase Complexed With 2-
Hydroxyphenylacetic Acid
pdb|2IQ0|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Hexanoic Acid
pdb|2IQD|A Chain A, Crystal Structure Of Aldose Reductase Complexed With
Lipoic Acid
pdb|1ADS|A Chain A, An Unlikely Sugar Substrate Site In The 1.65 Angstroms
Structure Of The Human Aldose Reductase Holoenzyme
Implicated In Diabetic Complications
pdb|1MAR|A Chain A, Refined 1.8 Angstroms Structure Of Human Aldose
Reductase Complexed With The Potent Inhibitor
Zopolrestat
pdb|2ACQ|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6-Phosphate
pdb|2ACR|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6- Phosphate
pdb|2ACS|A Chain A, An Anion Binding Site In Human Aldose Reductase:
Mechanistic Implications For The Binding Of Citrate,
Cacodylate, And Glucose-6-Phosphate
Length = 315
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|1EL3|A Chain A, Human Aldose Reductase Complexed With Idd384 Inhibitor
pdb|1IEI|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With The Inhibitor Zenarestat.
pdb|1T40|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed
With Nadp And Idd552 At Ph 5
pdb|2F2K|A Chain A, Aldose Reductase Tertiary Complex With Nadph And Deg
Length = 316
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|2PDB|A Chain A, Human Aldose Reductase Mutant F121p Complexed With
Zopolrestat.
pdb|2PDC|A Chain A, Human Aldose Reductase Mutant F121p Complexed With
Idd393
Length = 316
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 26 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 85
Query: 63 KAM 65
K +
Sbjct: 86 KGL 88
>pdb|1Z3N|A Chain A, Human Aldose Reductase In Complex With Nadp+ And The
Inhibitor Lidorestat At 1.04 Angstrom
pdb|3G5E|A Chain A, Human Aldose Reductase Complexed With Idd 740 Inhibitor
pdb|3T42|A Chain A, Human Aldose Reductase In Complex With A
Nitrile-Containing Idd Inhibitor
Length = 319
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 29 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 88
Query: 63 KAM 65
K +
Sbjct: 89 KGL 91
>pdb|1XGD|A Chain A, Apo R268a Human Aldose Reductase
Length = 315
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|2AGT|A Chain A, Aldose Reductase Mutant Leu 300 Pro Complexed With
Fidarestat
Length = 319
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 29 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 88
Query: 63 KAM 65
K +
Sbjct: 89 KGL 91
>pdb|3RX2|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac Sulfone
pdb|3RX3|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac
pdb|3RX4|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Sulindac Sulfide
pdb|3S3G|A Chain A, Crystal Structure Of Human Aldose Reductase Complexed With
Tolmetin
pdb|3V35|A Chain A, Aldose Reductase Complexed With A Nitro Compound
pdb|3V36|A Chain A, Aldose Reductase Complexed With Glceraldehyde
pdb|3V9Q|A Chain A, Aldose Reductase Complexed With A Phenolic Compound
Length = 336
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 46 GQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 105
Query: 63 KAM 65
K +
Sbjct: 106 KGL 108
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31
PG GK+T ++A G ++++ GDL E
Sbjct: 13 PGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|2ACU|A Chain A, Tyrosine-48 Is The Proton Donor And Histidine-110
Directs Substrate Stereochemical Selectivity In The
Reduction Reaction Of Human Aldose Reductase: Enzyme
Kinetics And The Crystal Structure Of The Y48h Mutant
Enzyme
Length = 315
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 GKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIRE--YKKEGKLVPSEIIVKLLQ 62
G+ T+ K+A +G+RH+ + + E E G + +RE K+E + S++ +
Sbjct: 25 GQVTEAVKVAIDVGYRHIDCAHVHQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHE 84
Query: 63 KAM 65
K +
Sbjct: 85 KGL 87
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31
PG GK+T ++A G ++++ GDL E
Sbjct: 20 PGVGKTTLGKELASKSGLKYINVGDLAREE 49
>pdb|3NZR|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase From Vibrio Fischeri Es114
pdb|3NZR|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase From Vibrio Fischeri Es114
pdb|3NZR|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase From Vibrio Fischeri Es114
pdb|3NZR|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphogluconate
Aldolase From Vibrio Fischeri Es114
Length = 248
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 97 NAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSEST 139
NA ++D +E + +LS+N VD ++ KK YSE T
Sbjct: 25 NAADIYDAAEGHVLVGVLSKNYPDVDTAVEDXKK----YSEVT 63
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 3 GSGKSTQCSKIAKHL---GFRH-LSAGDLLEAEA--ESGSNDGKM-IREYKKEGKLVPSE 55
GSGK+T CSK+A + G++ L D A A + N K I Y ++ P
Sbjct: 111 GSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDP-- 168
Query: 56 IIVKLLQKAMQESQNKNF---VIDGFPRNEENLSAAENILK----IEP-NAVLVFDCS 105
V + + +++ +N+NF ++D R+++ S E +L+ I+P N V V D S
Sbjct: 169 --VIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,980,328
Number of Sequences: 62578
Number of extensions: 189551
Number of successful extensions: 550
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 99
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)