Query 040894
Match_columns 169
No_of_seqs 129 out of 1271
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 12:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 5.9E-33 1.3E-37 188.1 20.9 169 1-169 39-240 (244)
2 KOG3079 Uridylate kinase/adeny 100.0 3.7E-32 7.9E-37 172.5 19.7 167 1-168 16-187 (195)
3 PRK14531 adenylate kinase; Pro 100.0 8.3E-32 1.8E-36 177.8 20.7 166 1-168 10-178 (183)
4 PRK14528 adenylate kinase; Pro 100.0 1.2E-31 2.6E-36 177.2 21.0 168 1-168 9-182 (186)
5 PLN02459 probable adenylate ki 100.0 3.3E-31 7.1E-36 180.3 20.3 167 1-169 37-246 (261)
6 PRK13808 adenylate kinase; Pro 100.0 2.5E-31 5.4E-36 186.6 20.3 169 1-169 8-188 (333)
7 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 6.6E-31 1.4E-35 173.9 21.0 168 1-168 7-178 (183)
8 PRK14532 adenylate kinase; Pro 100.0 7.6E-31 1.6E-35 174.3 21.1 168 1-168 8-181 (188)
9 TIGR01351 adk adenylate kinase 100.0 7.5E-31 1.6E-35 176.9 20.4 168 1-169 7-206 (210)
10 PRK14529 adenylate kinase; Pro 100.0 7.6E-31 1.6E-35 176.0 19.0 169 1-169 8-219 (223)
11 PLN02200 adenylate kinase fami 100.0 1.7E-30 3.6E-35 176.8 20.4 169 1-169 51-219 (234)
12 PRK14527 adenylate kinase; Pro 100.0 2.1E-30 4.5E-35 172.4 20.3 169 1-169 14-187 (191)
13 PRK02496 adk adenylate kinase; 100.0 7.8E-30 1.7E-34 168.8 20.9 167 1-169 9-179 (184)
14 PRK00279 adk adenylate kinase; 100.0 1.1E-29 2.4E-34 171.8 20.1 169 1-169 8-209 (215)
15 PRK14526 adenylate kinase; Pro 100.0 1.3E-29 2.8E-34 169.7 19.8 167 1-169 8-204 (211)
16 PTZ00088 adenylate kinase 1; P 100.0 1.3E-28 2.9E-33 166.5 20.4 167 1-169 14-226 (229)
17 PRK14530 adenylate kinase; Pro 100.0 5.6E-28 1.2E-32 163.5 19.6 164 1-169 11-208 (215)
18 TIGR01360 aden_kin_iso1 adenyl 100.0 1.4E-27 3.1E-32 158.6 21.3 167 1-168 11-181 (188)
19 cd01428 ADK Adenylate kinase ( 100.0 5.6E-28 1.2E-32 161.3 19.1 163 1-164 7-194 (194)
20 PLN02842 nucleotide kinase 100.0 3.2E-27 6.9E-32 173.3 19.5 166 1-169 5-197 (505)
21 PF00406 ADK: Adenylate kinase 100.0 4.6E-27 9.9E-32 150.9 17.1 143 1-150 4-150 (151)
22 COG0563 Adk Adenylate kinase a 100.0 2.6E-26 5.7E-31 149.7 18.4 162 1-168 8-173 (178)
23 KOG3078 Adenylate kinase [Nucl 99.9 3.6E-22 7.9E-27 133.0 15.8 166 1-168 23-218 (235)
24 PRK13949 shikimate kinase; Pro 99.8 3.7E-19 8E-24 115.8 15.6 151 1-168 9-165 (169)
25 COG0703 AroK Shikimate kinase 99.8 1E-18 2.2E-23 111.8 13.5 150 1-168 10-162 (172)
26 PRK01184 hypothetical protein; 99.8 1.3E-17 2.7E-22 110.5 18.4 156 1-168 9-172 (184)
27 PRK13973 thymidylate kinase; P 99.8 1.3E-17 2.9E-22 112.6 15.7 154 1-168 11-200 (213)
28 COG0125 Tmk Thymidylate kinase 99.8 6.9E-18 1.5E-22 112.4 13.0 159 1-168 11-197 (208)
29 PRK13948 shikimate kinase; Pro 99.8 1.1E-17 2.4E-22 109.7 13.2 149 1-168 18-169 (182)
30 PLN02924 thymidylate kinase 99.8 2.1E-17 4.6E-22 111.6 14.8 152 1-168 24-197 (220)
31 COG1102 Cmk Cytidylate kinase 99.8 4.3E-17 9.4E-22 102.1 14.4 103 1-116 8-111 (179)
32 PF01202 SKI: Shikimate kinase 99.8 8.7E-18 1.9E-22 108.5 11.8 148 2-168 1-153 (158)
33 PF02223 Thymidylate_kin: Thym 99.8 3.1E-18 6.7E-23 113.6 9.6 157 1-168 4-186 (186)
34 PRK13974 thymidylate kinase; P 99.8 1.9E-17 4E-22 111.8 12.6 161 1-168 11-200 (212)
35 PRK06217 hypothetical protein; 99.8 3.1E-17 6.6E-22 108.5 12.8 148 1-168 9-173 (183)
36 PRK03839 putative kinase; Prov 99.8 5.3E-17 1.1E-21 107.2 13.4 138 1-168 8-147 (180)
37 PRK08118 topology modulation p 99.7 9.5E-17 2.1E-21 104.4 12.9 141 1-167 9-166 (167)
38 PRK13947 shikimate kinase; Pro 99.7 2.1E-16 4.5E-21 103.5 14.3 149 1-168 9-161 (171)
39 PRK13975 thymidylate kinase; P 99.7 7.8E-16 1.7E-20 102.9 16.8 152 1-168 10-184 (196)
40 PRK03731 aroL shikimate kinase 99.7 2.7E-16 5.8E-21 103.0 13.3 150 1-168 10-164 (171)
41 PRK13946 shikimate kinase; Pro 99.7 3.9E-16 8.4E-21 103.3 14.0 146 1-168 18-170 (184)
42 TIGR00041 DTMP_kinase thymidyl 99.7 1.9E-16 4.1E-21 105.8 11.7 153 1-168 11-195 (195)
43 PRK08233 hypothetical protein; 99.7 1.7E-16 3.8E-21 104.8 10.2 154 1-168 11-171 (182)
44 PRK05057 aroK shikimate kinase 99.7 1E-15 2.2E-20 100.1 13.6 151 1-168 12-165 (172)
45 PRK14730 coaE dephospho-CoA ki 99.7 5.9E-16 1.3E-20 103.1 12.4 151 1-168 9-188 (195)
46 PRK00131 aroK shikimate kinase 99.7 1.4E-15 3E-20 99.9 13.0 151 1-168 12-165 (175)
47 PHA02530 pseT polynucleotide k 99.7 4.8E-16 1E-20 110.4 11.3 159 1-164 10-172 (300)
48 PRK07933 thymidylate kinase; V 99.7 8.5E-16 1.8E-20 103.6 11.7 158 1-168 8-207 (213)
49 PRK00081 coaE dephospho-CoA ki 99.7 5.8E-16 1.3E-20 103.2 10.7 150 1-168 10-187 (194)
50 PRK00625 shikimate kinase; Pro 99.7 3.4E-15 7.4E-20 97.3 14.0 106 1-116 8-116 (173)
51 PLN02199 shikimate kinase 99.7 4.4E-15 9.6E-20 102.9 15.2 151 1-168 110-282 (303)
52 PRK13976 thymidylate kinase; P 99.7 3.9E-15 8.5E-20 99.9 14.5 155 1-168 8-195 (209)
53 PRK08356 hypothetical protein; 99.7 1.4E-15 3E-20 101.5 12.2 157 1-168 13-186 (195)
54 cd02030 NDUO42 NADH:Ubiquinone 99.7 5.3E-15 1.2E-19 100.4 15.2 70 94-168 141-215 (219)
55 PRK14021 bifunctional shikimat 99.7 1.8E-15 3.9E-20 114.6 14.0 154 1-168 14-170 (542)
56 PRK04040 adenylate kinase; Pro 99.7 6E-15 1.3E-19 97.6 14.8 162 1-168 10-183 (188)
57 PRK00698 tmk thymidylate kinas 99.7 2.8E-15 6.1E-20 100.9 13.4 157 1-168 11-196 (205)
58 COG3265 GntK Gluconate kinase 99.7 3.6E-15 7.8E-20 92.2 12.3 146 1-168 3-153 (161)
59 PRK06762 hypothetical protein; 99.7 2.1E-14 4.6E-19 93.6 16.7 144 1-168 10-158 (166)
60 cd01672 TMPK Thymidine monopho 99.7 1.2E-14 2.6E-19 97.3 15.9 156 1-168 8-194 (200)
61 TIGR01313 therm_gnt_kin carboh 99.7 2.6E-14 5.6E-19 92.9 15.7 148 1-168 6-157 (163)
62 COG1936 Predicted nucleotide k 99.7 4.9E-15 1.1E-19 94.1 11.7 141 1-168 8-150 (180)
63 PRK14734 coaE dephospho-CoA ki 99.7 2.3E-15 4.9E-20 100.6 10.9 150 1-168 9-188 (200)
64 PRK04182 cytidylate kinase; Pr 99.7 3.9E-14 8.5E-19 93.4 16.7 104 1-116 8-112 (180)
65 PRK08154 anaerobic benzoate ca 99.6 1.6E-14 3.4E-19 102.7 14.4 148 1-168 141-295 (309)
66 COG0237 CoaE Dephospho-CoA kin 99.6 1.9E-15 4E-20 100.4 9.0 157 1-168 10-186 (201)
67 TIGR02173 cyt_kin_arch cytidyl 99.6 3.3E-14 7.1E-19 93.1 14.7 152 1-168 8-166 (171)
68 TIGR00152 dephospho-CoA kinase 99.6 1.4E-14 3.1E-19 96.2 13.1 152 1-169 7-187 (188)
69 cd00464 SK Shikimate kinase (S 99.6 1.2E-14 2.6E-19 93.6 12.2 103 1-116 7-112 (154)
70 PRK14731 coaE dephospho-CoA ki 99.6 1.1E-14 2.3E-19 98.1 12.0 150 1-168 13-196 (208)
71 COG0283 Cmk Cytidylate kinase 99.6 4.1E-14 8.8E-19 93.1 13.4 159 1-168 12-213 (222)
72 KOG3220 Similar to bacterial d 99.6 3.1E-14 6.8E-19 92.3 12.6 151 1-168 9-188 (225)
73 PTZ00451 dephospho-CoA kinase; 99.6 2.7E-14 5.9E-19 97.6 12.9 152 1-168 9-201 (244)
74 PRK14733 coaE dephospho-CoA ki 99.6 5E-14 1.1E-18 93.9 13.8 152 1-168 14-192 (204)
75 PRK14732 coaE dephospho-CoA ki 99.6 2E-14 4.3E-19 95.7 11.7 150 1-168 7-184 (196)
76 PLN02422 dephospho-CoA kinase 99.6 4.5E-14 9.8E-19 95.6 11.5 150 1-168 9-188 (232)
77 PRK07261 topology modulation p 99.6 4.4E-14 9.6E-19 92.3 10.8 92 1-116 8-99 (171)
78 PF13671 AAA_33: AAA domain; P 99.6 4.1E-14 8.9E-19 89.9 10.1 107 1-116 7-118 (143)
79 cd02022 DPCK Dephospho-coenzym 99.6 3.8E-14 8.2E-19 93.4 9.7 108 1-116 7-142 (179)
80 PRK13951 bifunctional shikimat 99.6 1.4E-13 3E-18 103.0 13.6 145 1-168 8-155 (488)
81 PRK11545 gntK gluconate kinase 99.6 5E-13 1.1E-17 86.7 14.6 148 1-168 3-154 (163)
82 PF01121 CoaE: Dephospho-CoA k 99.6 1.4E-14 3E-19 95.0 7.1 145 1-163 8-180 (180)
83 PRK03333 coaE dephospho-CoA ki 99.6 6.8E-14 1.5E-18 102.3 11.5 151 1-168 9-186 (395)
84 cd01673 dNK Deoxyribonucleosid 99.5 3.1E-13 6.7E-18 90.2 13.2 65 93-162 122-190 (193)
85 COG1428 Deoxynucleoside kinase 99.5 9.3E-14 2E-18 91.2 9.7 51 95-147 126-178 (216)
86 PRK10078 ribose 1,5-bisphospho 99.5 5.6E-13 1.2E-17 88.4 13.0 148 1-168 10-170 (186)
87 KOG3327 Thymidylate kinase/ade 99.5 6.2E-13 1.3E-17 85.2 11.9 154 2-168 14-189 (208)
88 TIGR03574 selen_PSTK L-seryl-t 99.5 2.7E-12 5.8E-17 88.9 15.9 148 1-168 7-163 (249)
89 cd00227 CPT Chloramphenicol (C 99.5 3.6E-12 7.9E-17 83.7 14.9 110 1-116 10-131 (175)
90 PRK13477 bifunctional pantoate 99.5 1.2E-12 2.6E-17 97.9 13.9 31 1-31 292-322 (512)
91 KOG3354 Gluconate kinase [Carb 99.5 7.8E-13 1.7E-17 82.5 10.7 149 1-168 20-182 (191)
92 KOG3347 Predicted nucleotide k 99.5 1.8E-12 3.8E-17 80.5 11.7 102 1-122 15-117 (176)
93 cd02021 GntK Gluconate kinase 99.5 2.7E-12 6E-17 82.2 13.1 126 1-137 7-137 (150)
94 PRK09825 idnK D-gluconate kina 99.5 4.2E-12 9.1E-17 83.3 12.8 148 1-168 11-162 (176)
95 cd02020 CMPK Cytidine monophos 99.5 8.9E-13 1.9E-17 84.1 9.5 97 1-116 7-103 (147)
96 TIGR00017 cmk cytidylate kinas 99.5 1.6E-12 3.5E-17 87.8 11.0 160 1-169 10-214 (217)
97 TIGR02322 phosphon_PhnN phosph 99.4 1.4E-12 3E-17 86.1 9.8 83 70-168 90-172 (179)
98 PRK12339 2-phosphoglycerate ki 99.4 6.2E-12 1.4E-16 83.7 12.6 110 1-116 11-140 (197)
99 KOG3877 NADH:ubiquinone oxidor 99.4 8.1E-12 1.7E-16 85.2 12.5 161 1-168 79-291 (393)
100 PRK11860 bifunctional 3-phosph 99.4 1.3E-11 2.9E-16 96.0 14.2 158 1-168 450-649 (661)
101 COG0572 Udk Uridine kinase [Nu 99.4 2E-12 4.4E-17 86.0 8.2 133 1-147 16-176 (218)
102 PRK05480 uridine/cytidine kina 99.4 3.3E-12 7.1E-17 86.3 9.3 108 1-116 14-146 (209)
103 PRK05541 adenylylsulfate kinas 99.4 2.2E-11 4.7E-16 80.1 12.3 102 1-115 15-121 (176)
104 PF13207 AAA_17: AAA domain; P 99.4 4.3E-13 9.4E-18 82.9 3.8 100 1-116 7-110 (121)
105 COG4088 Predicted nucleotide k 99.4 1.9E-11 4.1E-16 80.1 11.2 148 1-165 9-168 (261)
106 PRK06547 hypothetical protein; 99.4 2.2E-12 4.9E-17 84.1 6.7 113 1-116 23-138 (172)
107 PF07931 CPT: Chloramphenicol 99.4 1.1E-10 2.4E-15 75.9 14.2 146 1-169 9-170 (174)
108 COG2019 AdkA Archaeal adenylat 99.3 4.8E-10 1E-14 71.2 15.8 155 1-168 12-182 (189)
109 PRK00023 cmk cytidylate kinase 99.3 1.1E-10 2.4E-15 79.5 13.7 31 1-31 12-42 (225)
110 cd02023 UMPK Uridine monophosp 99.3 4E-11 8.6E-16 80.3 9.1 30 1-30 7-39 (198)
111 PRK12338 hypothetical protein; 99.3 3E-10 6.5E-15 80.3 13.7 115 1-116 12-150 (319)
112 PRK09518 bifunctional cytidyla 99.3 9.4E-11 2E-15 92.0 12.1 31 1-31 9-39 (712)
113 cd02024 NRK1 Nicotinamide ribo 99.3 9.9E-12 2.1E-16 81.9 5.7 31 1-31 7-38 (187)
114 PTZ00301 uridine kinase; Provi 99.3 4.2E-11 9.2E-16 80.5 8.1 41 70-116 107-147 (210)
115 PHA03132 thymidine kinase; Pro 99.2 1.8E-10 3.9E-15 87.0 11.0 43 94-138 400-445 (580)
116 TIGR00235 udk uridine kinase. 99.2 9.4E-11 2E-15 79.1 8.5 108 1-116 14-146 (207)
117 PRK06696 uridine kinase; Valid 99.2 1.1E-10 2.5E-15 79.5 8.9 30 1-30 30-64 (223)
118 PRK12269 bifunctional cytidyla 99.2 9E-10 1.9E-14 87.3 14.6 31 1-31 42-72 (863)
119 PRK00889 adenylylsulfate kinas 99.2 7.7E-10 1.7E-14 72.7 12.2 143 1-168 12-164 (175)
120 PF13238 AAA_18: AAA domain; P 99.2 3.2E-10 6.9E-15 70.6 9.5 101 1-116 6-112 (129)
121 COG3709 Uncharacterized compon 99.2 6.2E-10 1.3E-14 70.3 10.2 149 1-167 13-175 (192)
122 PRK14738 gmk guanylate kinase; 99.2 3.4E-10 7.4E-15 76.2 9.9 93 59-168 94-188 (206)
123 COG0645 Predicted kinase [Gene 99.2 3.3E-09 7.2E-14 67.7 13.5 120 2-129 10-137 (170)
124 smart00072 GuKc Guanylate kina 99.2 7.7E-11 1.7E-15 78.0 6.3 148 1-168 10-176 (184)
125 TIGR03263 guanyl_kin guanylate 99.2 3.2E-10 6.9E-15 74.8 8.9 150 1-168 9-174 (180)
126 cd02025 PanK Pantothenate kina 99.2 1.4E-10 3E-15 78.8 7.0 29 1-29 7-42 (220)
127 PRK14737 gmk guanylate kinase; 99.2 8E-10 1.7E-14 73.2 10.3 150 1-168 12-178 (186)
128 PRK03846 adenylylsulfate kinas 99.1 1.4E-09 3.1E-14 72.9 11.5 97 1-112 32-138 (198)
129 PF00485 PRK: Phosphoribulokin 99.1 3E-11 6.6E-16 80.6 3.3 103 1-116 7-147 (194)
130 PRK05537 bifunctional sulfate 99.1 1.1E-09 2.4E-14 83.7 11.9 102 1-114 400-510 (568)
131 PRK05416 glmZ(sRNA)-inactivati 99.1 7.5E-09 1.6E-13 72.8 14.7 134 1-168 14-154 (288)
132 TIGR00455 apsK adenylylsulfate 99.1 6.2E-09 1.4E-13 68.9 13.3 101 1-112 26-132 (184)
133 PRK00300 gmk guanylate kinase; 99.1 3.7E-09 8E-14 71.2 12.3 150 1-168 13-178 (205)
134 TIGR01663 PNK-3'Pase polynucle 99.1 4.5E-09 9.6E-14 79.3 13.3 90 1-116 377-468 (526)
135 PLN02348 phosphoribulokinase 99.1 9.6E-10 2.1E-14 79.5 8.9 41 70-116 163-203 (395)
136 PRK07429 phosphoribulokinase; 99.1 3.4E-09 7.4E-14 75.8 10.7 28 1-28 16-46 (327)
137 KOG4235 Mitochondrial thymidin 99.0 1.3E-08 2.8E-13 66.3 11.7 68 92-163 150-222 (244)
138 cd02027 APSK Adenosine 5'-phos 99.0 1.6E-08 3.5E-13 64.7 12.0 102 1-115 7-116 (149)
139 PF01583 APS_kinase: Adenylyls 99.0 3.1E-09 6.8E-14 67.8 7.7 101 1-113 10-117 (156)
140 PRK07667 uridine kinase; Provi 99.0 3.2E-09 7E-14 70.8 8.0 109 1-116 25-159 (193)
141 cd02028 UMPK_like Uridine mono 99.0 8.8E-10 1.9E-14 72.6 4.7 30 1-30 7-41 (179)
142 TIGR03575 selen_PSTK_euk L-ser 99.0 1.9E-08 4.2E-13 72.1 11.5 29 1-29 7-41 (340)
143 COG0194 Gmk Guanylate kinase [ 98.9 1.5E-08 3.3E-13 65.8 9.6 127 1-140 12-155 (191)
144 PF08433 KTI12: Chromatin asso 98.9 1.8E-08 3.9E-13 70.3 10.7 150 1-168 9-169 (270)
145 COG0529 CysC Adenylylsulfate k 98.9 6.1E-08 1.3E-12 62.4 11.8 102 1-113 31-138 (197)
146 PRK05439 pantothenate kinase; 98.9 2.7E-09 5.8E-14 75.5 6.1 30 1-30 94-130 (311)
147 cd02026 PRK Phosphoribulokinas 98.9 1.4E-08 3E-13 71.1 9.6 28 1-28 7-37 (273)
148 PRK09270 nucleoside triphospha 98.9 1E-08 2.2E-13 70.2 8.4 45 70-116 137-181 (229)
149 PRK05506 bifunctional sulfate 98.9 3E-08 6.4E-13 77.3 11.9 102 1-113 468-575 (632)
150 PF03668 ATP_bind_2: P-loop AT 98.9 1.9E-07 4.1E-12 64.9 13.8 134 1-168 9-150 (284)
151 PRK04220 2-phosphoglycerate ki 98.9 1.3E-07 2.8E-12 66.6 13.0 111 1-116 100-235 (301)
152 COG4639 Predicted kinase [Gene 98.9 5.3E-08 1.2E-12 61.3 9.6 105 1-116 10-117 (168)
153 PRK15453 phosphoribulokinase; 98.9 8.7E-09 1.9E-13 71.5 6.4 29 1-29 13-46 (290)
154 PRK12337 2-phosphoglycerate ki 98.9 3E-07 6.5E-12 68.1 14.7 26 1-26 263-289 (475)
155 TIGR00554 panK_bact pantothena 98.9 1.5E-08 3.3E-13 71.2 7.7 23 94-116 195-217 (290)
156 KOG3308 Uncharacterized protei 98.9 1.1E-08 2.3E-13 67.0 6.4 109 2-116 13-148 (225)
157 PF01591 6PF2K: 6-phosphofruct 98.8 1.9E-07 4.1E-12 63.2 11.2 136 1-143 20-179 (222)
158 cd02029 PRK_like Phosphoribulo 98.8 3.2E-08 7E-13 68.3 6.7 29 1-29 7-40 (277)
159 PLN02772 guanylate kinase 98.7 3.3E-07 7.1E-12 66.7 10.9 97 58-168 216-312 (398)
160 PF06414 Zeta_toxin: Zeta toxi 98.7 5.1E-09 1.1E-13 70.2 1.4 108 1-116 23-141 (199)
161 cd02019 NK Nucleoside/nucleoti 98.7 6.5E-08 1.4E-12 53.5 5.4 17 1-17 7-23 (69)
162 COG2074 2-phosphoglycerate kin 98.7 2.2E-06 4.7E-11 58.4 13.1 108 1-116 97-230 (299)
163 PHA03136 thymidine kinase; Pro 98.7 8.8E-07 1.9E-11 63.9 11.8 29 93-123 189-217 (378)
164 PLN02318 phosphoribulokinase/u 98.6 2.8E-07 6E-12 70.2 7.9 28 1-28 73-101 (656)
165 PHA00729 NTP-binding motif con 98.6 1.1E-06 2.5E-11 59.4 9.5 102 1-116 25-139 (226)
166 PF01712 dNK: Deoxynucleoside 98.5 6.3E-07 1.4E-11 57.1 7.4 61 92-159 63-128 (146)
167 PF00625 Guanylate_kin: Guanyl 98.5 4E-07 8.8E-12 60.3 5.6 93 58-168 83-176 (183)
168 PLN02165 adenylate isopentenyl 98.5 2.7E-07 5.8E-12 65.9 4.8 27 1-27 51-77 (334)
169 COG1660 Predicted P-loop-conta 98.4 8.5E-06 1.8E-10 55.8 11.3 68 97-168 84-151 (286)
170 PRK09169 hypothetical protein; 98.4 8.2E-06 1.8E-10 69.7 13.2 101 1-116 2118-2220(2316)
171 PF13189 Cytidylate_kin2: Cyti 98.4 3.1E-06 6.8E-11 55.8 8.3 107 2-116 8-134 (179)
172 PF08303 tRNA_lig_kinase: tRNA 98.4 1.3E-05 2.8E-10 51.3 10.5 67 1-89 7-74 (168)
173 COG4185 Uncharacterized protei 98.4 9.6E-06 2.1E-10 51.6 9.8 141 1-158 10-157 (187)
174 COG1072 CoaA Panthothenate kin 98.3 1.3E-06 2.9E-11 60.2 5.6 82 70-156 187-270 (283)
175 PHA03134 thymidine kinase; Pro 98.2 0.00016 3.4E-09 51.8 14.3 26 97-124 165-190 (340)
176 PTZ00322 6-phosphofructo-2-kin 98.2 1.7E-05 3.6E-10 62.5 8.9 23 1-23 223-245 (664)
177 COG3896 Chloramphenicol 3-O-ph 98.1 9.6E-05 2.1E-09 47.0 9.5 154 1-168 31-199 (205)
178 PF00004 AAA: ATPase family as 98.1 2.8E-06 6.1E-11 52.9 2.4 24 1-24 6-29 (132)
179 PF00693 Herpes_TK: Thymidine 98.0 0.00087 1.9E-08 46.9 14.4 28 95-124 145-172 (281)
180 KOG3062 RNA polymerase II elon 98.0 1.4E-05 3.1E-10 53.6 5.3 106 2-116 10-122 (281)
181 KOG0733 Nuclear AAA ATPase (VC 98.0 2.6E-05 5.6E-10 59.6 7.3 109 1-115 231-371 (802)
182 TIGR03707 PPK2_P_aer polyphosp 98.0 6E-05 1.3E-09 51.4 8.2 138 1-160 39-206 (230)
183 cd00071 GMPK Guanosine monopho 97.9 1.3E-05 2.7E-10 50.6 3.5 18 1-18 7-24 (137)
184 PHA03135 thymidine kinase; Pro 97.9 0.00092 2E-08 48.1 13.0 17 1-17 18-34 (343)
185 KOG2702 Predicted panthothenat 97.9 2.7E-05 5.7E-10 52.7 5.0 45 70-116 235-279 (323)
186 TIGR03708 poly_P_AMP_trns poly 97.9 0.00013 2.9E-09 55.1 8.7 137 2-160 49-215 (493)
187 PF05496 RuvB_N: Holliday junc 97.8 1.2E-05 2.5E-10 54.4 2.5 21 1-21 58-78 (233)
188 TIGR03709 PPK2_rel_1 polyphosp 97.8 0.0002 4.3E-09 49.9 7.7 137 2-160 65-231 (264)
189 PHA03133 thymidine kinase; Pro 97.7 0.0058 1.3E-07 44.3 14.6 30 94-125 192-221 (368)
190 PF13401 AAA_22: AAA domain; P 97.7 9E-05 2E-09 46.1 4.9 75 1-78 12-96 (131)
191 COG2256 MGS1 ATPase related to 97.7 3.1E-05 6.7E-10 56.3 2.8 24 1-24 56-79 (436)
192 PHA03138 thymidine kinase; Pro 97.7 0.0048 1E-07 44.5 13.5 27 96-125 169-195 (340)
193 PRK00091 miaA tRNA delta(2)-is 97.7 3.2E-05 6.9E-10 55.2 2.5 26 1-26 12-37 (307)
194 TIGR02881 spore_V_K stage V sp 97.6 0.00032 7E-09 49.1 7.4 17 1-17 50-66 (261)
195 PF13173 AAA_14: AAA domain 97.6 0.00064 1.4E-08 42.3 7.9 29 1-29 10-42 (128)
196 PRK05800 cobU adenosylcobinami 97.6 8.2E-05 1.8E-09 48.6 3.9 20 1-20 9-28 (170)
197 PF01745 IPT: Isopentenyl tran 97.6 8.1E-05 1.7E-09 49.9 3.8 113 1-116 9-138 (233)
198 PF07728 AAA_5: AAA domain (dy 97.6 6.4E-05 1.4E-09 47.4 3.0 23 1-23 7-29 (139)
199 TIGR00174 miaA tRNA isopenteny 97.6 4.9E-05 1.1E-09 53.6 2.6 26 1-26 7-32 (287)
200 PLN02840 tRNA dimethylallyltra 97.6 4.2E-05 9.2E-10 56.5 2.3 26 1-26 29-54 (421)
201 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0011 2.3E-08 50.5 9.4 24 1-24 267-290 (489)
202 smart00382 AAA ATPases associa 97.5 5.2E-05 1.1E-09 47.3 1.9 20 1-20 10-29 (148)
203 PF13521 AAA_28: AAA domain; P 97.5 5.9E-05 1.3E-09 48.9 2.2 29 1-32 7-35 (163)
204 KOG0730 AAA+-type ATPase [Post 97.5 0.002 4.4E-08 49.9 10.3 108 1-115 476-612 (693)
205 PRK12724 flagellar biosynthesi 97.5 0.0022 4.9E-08 47.7 10.3 17 1-17 231-247 (432)
206 TIGR00390 hslU ATP-dependent p 97.5 7.3E-05 1.6E-09 55.2 2.6 26 1-26 55-80 (441)
207 PF02224 Cytidylate_kin: Cytid 97.5 0.0006 1.3E-08 43.7 6.3 90 70-168 62-155 (157)
208 PRK06620 hypothetical protein; 97.5 0.00073 1.6E-08 45.9 7.2 23 1-23 52-74 (214)
209 smart00763 AAA_PrkA PrkA AAA d 97.5 7.8E-05 1.7E-09 54.0 2.3 19 1-19 86-104 (361)
210 PRK06761 hypothetical protein; 97.5 7.3E-05 1.6E-09 52.6 2.1 19 1-19 11-29 (282)
211 PRK05201 hslU ATP-dependent pr 97.4 9.1E-05 2E-09 54.8 2.4 26 1-26 58-83 (443)
212 PF13245 AAA_19: Part of AAA d 97.4 0.00012 2.7E-09 41.1 2.4 17 1-17 18-35 (76)
213 COG3172 NadR Predicted ATPase/ 97.4 0.0077 1.7E-07 38.7 10.4 20 1-20 16-35 (187)
214 CHL00181 cbbX CbbX; Provisiona 97.4 0.00072 1.6E-08 48.0 6.6 17 1-17 67-83 (287)
215 KOG0744 AAA+-type ATPase [Post 97.4 9.3E-05 2E-09 52.6 2.1 19 1-19 185-203 (423)
216 PLN02748 tRNA dimethylallyltra 97.4 0.00013 2.8E-09 54.9 2.5 29 1-29 30-60 (468)
217 PF03029 ATP_bind_1: Conserved 97.4 0.00014 2.9E-09 50.3 2.4 18 1-18 4-21 (238)
218 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00017 3.7E-09 50.5 3.0 22 1-22 29-50 (262)
219 TIGR01650 PD_CobS cobaltochela 97.3 0.00017 3.7E-09 51.7 2.8 22 1-22 72-93 (327)
220 PF07726 AAA_3: ATPase family 97.3 9.4E-05 2E-09 45.6 1.3 23 1-23 7-29 (131)
221 PRK05342 clpX ATP-dependent pr 97.3 0.00017 3.8E-09 53.6 2.7 25 1-25 116-140 (412)
222 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00021 4.6E-09 44.6 2.5 20 1-20 30-49 (133)
223 PF03976 PPK2: Polyphosphate k 97.3 0.00012 2.6E-09 50.0 1.5 138 1-160 39-206 (228)
224 TIGR01223 Pmev_kin_anim phosph 97.3 0.02 4.4E-07 37.5 11.5 111 2-116 8-135 (182)
225 KOG0635 Adenosine 5'-phosphosu 97.3 0.002 4.4E-08 40.9 6.6 16 2-17 40-55 (207)
226 COG1618 Predicted nucleotide k 97.3 0.00021 4.6E-09 45.7 2.3 31 1-31 13-43 (179)
227 PRK09087 hypothetical protein; 97.2 0.00034 7.4E-09 47.9 3.4 31 1-31 52-82 (226)
228 PHA02575 1 deoxynucleoside mon 97.2 0.0004 8.6E-09 47.1 3.5 31 1-32 8-39 (227)
229 TIGR03708 poly_P_AMP_trns poly 97.2 0.0029 6.4E-08 48.1 8.3 137 2-160 308-474 (493)
230 PRK11784 tRNA 2-selenouridine 97.2 0.0018 4E-08 47.1 7.0 100 1-116 149-256 (345)
231 PRK08099 bifunctional DNA-bind 97.2 0.0003 6.6E-09 52.2 2.9 21 1-21 227-247 (399)
232 cd00009 AAA The AAA+ (ATPases 97.2 0.00031 6.8E-09 44.1 2.5 17 1-17 27-43 (151)
233 KOG0743 AAA+-type ATPase [Post 97.2 0.00025 5.4E-09 52.4 2.2 24 1-24 243-266 (457)
234 TIGR00382 clpX endopeptidase C 97.2 0.0003 6.5E-09 52.2 2.6 24 1-24 124-147 (413)
235 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00029 6.3E-09 42.2 1.9 26 1-28 23-48 (107)
236 PLN02796 D-glycerate 3-kinase 97.1 0.00025 5.5E-09 51.2 1.8 29 1-29 108-141 (347)
237 cd00544 CobU Adenosylcobinamid 97.1 0.0012 2.6E-08 43.2 4.7 20 1-20 7-26 (169)
238 KOG1969 DNA replication checkp 97.1 0.00033 7.2E-09 54.8 2.4 24 1-24 334-357 (877)
239 PRK03992 proteasome-activating 97.1 0.0004 8.7E-09 51.5 2.6 23 1-23 173-195 (389)
240 COG1136 SalX ABC-type antimicr 97.1 0.00033 7.2E-09 47.6 1.9 15 1-15 39-53 (226)
241 PF00910 RNA_helicase: RNA hel 97.1 0.00046 1E-08 41.5 2.3 18 1-18 6-23 (107)
242 COG1126 GlnQ ABC-type polar am 97.1 0.00034 7.3E-09 47.0 1.8 15 1-15 36-50 (240)
243 TIGR01526 nadR_NMN_Atrans nico 97.0 0.00053 1.1E-08 49.6 2.9 23 1-23 170-192 (325)
244 PF02367 UPF0079: Uncharacteri 97.0 0.00055 1.2E-08 42.2 2.5 20 1-20 23-42 (123)
245 PRK04195 replication factor C 97.0 0.00046 9.9E-09 52.6 2.6 24 1-24 47-70 (482)
246 TIGR01242 26Sp45 26S proteasom 97.0 0.00052 1.1E-08 50.4 2.8 24 1-24 164-187 (364)
247 COG3842 PotA ABC-type spermidi 97.0 0.00038 8.2E-09 50.5 1.9 16 1-16 39-54 (352)
248 PF03215 Rad17: Rad17 cell cyc 97.0 0.00056 1.2E-08 52.4 2.9 23 1-23 53-75 (519)
249 COG2255 RuvB Holliday junction 97.0 0.00057 1.2E-08 47.8 2.7 20 1-20 60-79 (332)
250 PTZ00454 26S protease regulato 97.0 0.00058 1.3E-08 50.7 2.8 24 1-24 187-210 (398)
251 TIGR01241 FtsH_fam ATP-depende 97.0 0.00056 1.2E-08 52.4 2.7 24 1-24 96-119 (495)
252 COG1124 DppF ABC-type dipeptid 97.0 0.00044 9.6E-09 47.2 1.9 17 1-17 41-57 (252)
253 PF03266 NTPase_1: NTPase; In 97.0 0.00065 1.4E-08 44.3 2.6 17 1-17 7-23 (168)
254 PHA02244 ATPase-like protein 96.9 0.00067 1.5E-08 49.5 2.6 27 1-27 127-153 (383)
255 PRK00080 ruvB Holliday junctio 96.9 0.00075 1.6E-08 48.9 2.9 21 1-21 59-79 (328)
256 TIGR00635 ruvB Holliday juncti 96.9 0.00084 1.8E-08 48.1 2.8 20 1-20 38-57 (305)
257 PRK13342 recombination factor 96.9 0.00074 1.6E-08 50.5 2.6 23 1-23 44-66 (413)
258 COG0324 MiaA tRNA delta(2)-iso 96.9 0.00093 2E-08 47.6 2.9 28 1-28 11-38 (308)
259 PF05729 NACHT: NACHT domain 96.9 0.00075 1.6E-08 43.5 2.3 17 1-17 8-24 (166)
260 PRK14974 cell division protein 96.9 0.0035 7.5E-08 45.5 5.8 17 1-17 148-164 (336)
261 PLN00020 ribulose bisphosphate 96.9 0.00082 1.8E-08 49.1 2.5 28 1-28 156-185 (413)
262 COG1116 TauB ABC-type nitrate/ 96.8 0.00068 1.5E-08 46.5 1.9 17 1-17 37-53 (248)
263 PTZ00361 26 proteosome regulat 96.8 0.00099 2.1E-08 50.0 2.9 23 1-23 225-247 (438)
264 TIGR01425 SRP54_euk signal rec 96.8 0.005 1.1E-07 46.1 6.4 25 1-25 108-137 (429)
265 PF13555 AAA_29: P-loop contai 96.8 0.00097 2.1E-08 35.8 2.0 16 1-16 31-46 (62)
266 KOG0731 AAA+-type ATPase conta 96.8 0.0098 2.1E-07 47.4 8.1 110 1-114 352-491 (774)
267 PLN03046 D-glycerate 3-kinase; 96.8 0.00064 1.4E-08 50.4 1.7 29 1-29 220-253 (460)
268 PF00308 Bac_DnaA: Bacterial d 96.8 0.0067 1.5E-07 41.4 6.5 111 1-116 42-177 (219)
269 COG3854 SpoIIIAA ncharacterize 96.8 0.0044 9.6E-08 42.4 5.4 18 1-18 145-162 (308)
270 PRK14962 DNA polymerase III su 96.8 0.00095 2.1E-08 50.6 2.5 19 1-19 44-62 (472)
271 KOG1384 tRNA delta(2)-isopente 96.8 0.0036 7.8E-08 44.7 5.1 26 1-26 15-40 (348)
272 COG0378 HypB Ni2+-binding GTPa 96.8 0.001 2.2E-08 44.0 2.3 24 1-24 21-48 (202)
273 TIGR03015 pepcterm_ATPase puta 96.8 0.00093 2E-08 46.9 2.3 18 1-18 51-68 (269)
274 COG3839 MalK ABC-type sugar tr 96.8 0.00079 1.7E-08 48.6 1.9 16 1-16 37-52 (338)
275 cd01131 PilT Pilus retraction 96.8 0.001 2.2E-08 44.7 2.3 18 1-18 9-26 (198)
276 KOG0738 AAA+-type ATPase [Post 96.8 0.022 4.8E-07 42.0 9.0 24 1-24 253-276 (491)
277 COG1222 RPT1 ATP-dependent 26S 96.8 0.0028 6.1E-08 45.9 4.5 36 1-36 193-230 (406)
278 COG0464 SpoVK ATPases of the A 96.7 0.011 2.3E-07 45.4 7.9 25 1-25 284-308 (494)
279 cd03115 SRP The signal recogni 96.7 0.0012 2.5E-08 43.3 2.4 25 1-25 8-37 (173)
280 PRK08903 DnaA regulatory inact 96.7 0.0019 4.1E-08 44.3 3.5 28 1-28 50-82 (227)
281 cd01918 HprK_C HprK/P, the bif 96.7 0.0013 2.7E-08 42.0 2.4 24 1-25 22-45 (149)
282 TIGR02880 cbbX_cfxQ probable R 96.7 0.0011 2.5E-08 47.0 2.4 17 1-17 66-82 (284)
283 KOG0741 AAA+-type ATPase [Post 96.7 0.0028 6.1E-08 48.3 4.4 23 1-23 546-568 (744)
284 TIGR00362 DnaA chromosomal rep 96.7 0.044 9.5E-07 41.0 10.8 31 1-31 144-181 (405)
285 PF07724 AAA_2: AAA domain (Cd 96.7 0.0013 2.9E-08 43.0 2.4 19 1-19 11-29 (171)
286 PRK14961 DNA polymerase III su 96.7 0.0013 2.8E-08 48.4 2.6 19 1-19 46-64 (363)
287 CHL00176 ftsH cell division pr 96.7 0.0014 3E-08 51.6 2.8 24 1-24 224-247 (638)
288 PRK12323 DNA polymerase III su 96.7 0.069 1.5E-06 42.3 11.7 19 1-19 46-64 (700)
289 COG3911 Predicted ATPase [Gene 96.7 0.0012 2.6E-08 41.8 1.9 19 1-20 17-35 (183)
290 PRK14956 DNA polymerase III su 96.6 0.0014 2.9E-08 49.6 2.4 20 1-20 48-67 (484)
291 COG0802 Predicted ATPase or ki 96.6 0.0014 2.9E-08 41.6 2.0 18 2-19 34-51 (149)
292 PRK10646 ADP-binding protein; 96.6 0.0015 3.2E-08 41.8 2.2 18 2-19 37-54 (153)
293 COG0396 sufC Cysteine desulfur 96.6 0.0012 2.5E-08 44.9 1.8 21 1-21 38-58 (251)
294 COG1855 ATPase (PilT family) [ 96.6 0.0015 3.2E-08 48.7 2.3 18 1-18 271-288 (604)
295 cd01120 RecA-like_NTPases RecA 96.6 0.0016 3.6E-08 41.7 2.4 17 1-17 7-23 (165)
296 COG2812 DnaX DNA polymerase II 96.6 0.0056 1.2E-07 46.8 5.4 21 1-21 46-66 (515)
297 KOG0707 Guanylate kinase [Nucl 96.6 0.082 1.8E-06 36.1 10.3 19 1-19 45-63 (231)
298 PLN03025 replication factor C 96.6 0.0016 3.4E-08 47.0 2.4 17 1-17 42-58 (319)
299 PRK10751 molybdopterin-guanine 96.6 0.0016 3.6E-08 42.6 2.2 18 1-18 14-31 (173)
300 COG1118 CysA ABC-type sulfate/ 96.6 0.0013 2.8E-08 46.6 1.8 17 1-17 36-52 (345)
301 COG4619 ABC-type uncharacteriz 96.6 0.0015 3.2E-08 42.4 1.9 17 1-17 37-53 (223)
302 COG0541 Ffh Signal recognition 96.6 0.0093 2E-07 44.3 6.1 15 3-17 110-124 (451)
303 COG3840 ThiQ ABC-type thiamine 96.6 0.0014 3.1E-08 43.1 1.8 16 1-16 33-48 (231)
304 PRK06645 DNA polymerase III su 96.5 0.0018 3.9E-08 49.6 2.5 20 1-20 51-70 (507)
305 TIGR00960 3a0501s02 Type II (G 96.5 0.0014 3.1E-08 44.4 1.9 17 1-17 37-53 (216)
306 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0015 3.3E-08 44.4 1.9 17 1-17 38-54 (218)
307 PRK06893 DNA replication initi 96.5 0.0028 6.1E-08 43.6 3.2 25 1-25 47-76 (229)
308 PRK00149 dnaA chromosomal repl 96.5 0.026 5.6E-07 42.9 8.6 31 1-31 156-193 (450)
309 PF03308 ArgK: ArgK protein; 96.5 0.0019 4.1E-08 44.8 2.3 17 1-17 37-53 (266)
310 PRK14086 dnaA chromosomal repl 96.5 0.058 1.3E-06 42.3 10.5 31 1-31 322-359 (617)
311 PRK12723 flagellar biosynthesi 96.5 0.019 4.1E-07 42.6 7.6 17 1-17 182-198 (388)
312 COG0714 MoxR-like ATPases [Gen 96.5 0.0022 4.8E-08 46.5 2.8 22 1-22 51-72 (329)
313 PF13086 AAA_11: AAA domain; P 96.5 0.002 4.3E-08 43.9 2.4 17 1-17 25-41 (236)
314 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0016 3.4E-08 44.1 1.9 17 1-17 35-51 (211)
315 PRK10463 hydrogenase nickel in 96.5 0.0019 4.1E-08 45.7 2.3 17 1-17 112-128 (290)
316 TIGR01243 CDC48 AAA family ATP 96.5 0.0018 3.9E-08 52.0 2.5 24 1-24 495-518 (733)
317 TIGR01166 cbiO cobalt transpor 96.5 0.0016 3.5E-08 43.3 1.9 17 1-17 26-42 (190)
318 cd03292 ABC_FtsE_transporter F 96.5 0.0016 3.5E-08 44.1 1.9 17 1-17 35-51 (214)
319 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0015 3.3E-08 43.0 1.7 17 1-17 33-49 (177)
320 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.007 1.5E-07 41.8 5.0 16 1-16 29-44 (237)
321 PF00448 SRP54: SRP54-type pro 96.5 0.0022 4.8E-08 43.0 2.4 17 1-17 9-25 (196)
322 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0017 3.7E-08 43.8 1.9 17 1-17 34-50 (205)
323 PF13191 AAA_16: AAA ATPase do 96.5 0.0022 4.7E-08 42.2 2.3 17 1-17 32-48 (185)
324 COG1120 FepC ABC-type cobalami 96.5 0.0018 3.8E-08 45.1 1.9 18 1-18 36-53 (258)
325 PRK13341 recombination factor 96.5 0.0023 5E-08 51.1 2.8 25 1-25 60-84 (725)
326 cd03269 ABC_putative_ATPase Th 96.5 0.0018 4E-08 43.7 1.9 17 1-17 34-50 (210)
327 cd03264 ABC_drug_resistance_li 96.5 0.0018 3.9E-08 43.8 1.9 17 1-17 33-49 (211)
328 COG2884 FtsE Predicted ATPase 96.4 0.0021 4.7E-08 42.5 2.0 17 1-17 36-52 (223)
329 PF00005 ABC_tran: ABC transpo 96.4 0.0016 3.6E-08 40.7 1.5 17 1-17 19-35 (137)
330 cd01130 VirB11-like_ATPase Typ 96.4 0.0022 4.7E-08 42.6 2.2 18 1-18 33-50 (186)
331 cd03261 ABC_Org_Solvent_Resist 96.4 0.0019 4.1E-08 44.5 1.9 17 1-17 34-50 (235)
332 TIGR00176 mobB molybdopterin-g 96.4 0.0025 5.5E-08 41.0 2.4 17 1-17 7-23 (155)
333 PRK12402 replication factor C 96.4 0.0023 4.9E-08 46.4 2.4 18 1-18 44-61 (337)
334 COG5324 Uncharacterized conser 96.4 0.02 4.2E-07 43.3 7.1 26 2-27 383-408 (758)
335 PRK04328 hypothetical protein; 96.4 0.0079 1.7E-07 41.9 5.0 16 1-16 31-46 (249)
336 cd03263 ABC_subfamily_A The AB 96.4 0.0019 4.2E-08 43.9 1.9 17 1-17 36-52 (220)
337 TIGR02673 FtsE cell division A 96.4 0.0019 4.2E-08 43.8 1.9 17 1-17 36-52 (214)
338 TIGR01243 CDC48 AAA family ATP 96.4 0.0022 4.8E-08 51.5 2.4 23 1-23 220-242 (733)
339 cd03259 ABC_Carb_Solutes_like 96.4 0.002 4.3E-08 43.7 1.9 17 1-17 34-50 (213)
340 PRK08084 DNA replication initi 96.4 0.0026 5.6E-08 43.9 2.5 26 1-26 53-83 (235)
341 PHA02544 44 clamp loader, smal 96.4 0.0025 5.4E-08 45.9 2.5 21 1-21 51-71 (316)
342 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.002 4.4E-08 43.9 1.9 17 1-17 38-54 (220)
343 cd03301 ABC_MalK_N The N-termi 96.4 0.0021 4.5E-08 43.6 1.9 17 1-17 34-50 (213)
344 TIGR03689 pup_AAA proteasome A 96.4 0.0023 5.1E-08 48.9 2.4 20 1-20 224-243 (512)
345 cd03238 ABC_UvrA The excision 96.4 0.002 4.4E-08 42.4 1.8 14 1-14 29-42 (176)
346 PRK15455 PrkA family serine pr 96.4 0.0021 4.6E-08 49.6 2.1 18 1-18 111-128 (644)
347 PRK11629 lolD lipoprotein tran 96.4 0.0021 4.5E-08 44.2 1.9 17 1-17 43-59 (233)
348 cd03258 ABC_MetN_methionine_tr 96.4 0.0021 4.5E-08 44.2 1.9 17 1-17 39-55 (233)
349 cd03224 ABC_TM1139_LivF_branch 96.4 0.002 4.3E-08 43.9 1.8 17 1-17 34-50 (222)
350 TIGR03608 L_ocin_972_ABC putat 96.4 0.0021 4.6E-08 43.2 1.9 17 1-17 32-48 (206)
351 cd03229 ABC_Class3 This class 96.4 0.0022 4.7E-08 42.3 1.9 17 1-17 34-50 (178)
352 PRK14957 DNA polymerase III su 96.4 0.0026 5.7E-08 49.1 2.6 19 1-19 46-64 (546)
353 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.0026 5.7E-08 43.4 2.4 28 1-28 46-78 (226)
354 COG1117 PstB ABC-type phosphat 96.4 0.002 4.4E-08 43.4 1.7 16 1-16 41-56 (253)
355 PRK14964 DNA polymerase III su 96.4 0.0026 5.6E-08 48.5 2.4 20 1-20 43-62 (491)
356 PRK06067 flagellar accessory p 96.4 0.0043 9.3E-08 42.7 3.4 16 1-16 33-48 (234)
357 TIGR02315 ABC_phnC phosphonate 96.4 0.0022 4.7E-08 44.4 1.9 17 1-17 36-52 (243)
358 PF06745 KaiC: KaiC; InterPro 96.4 0.014 3E-07 40.0 5.8 15 1-15 27-41 (226)
359 cd03256 ABC_PhnC_transporter A 96.4 0.0022 4.7E-08 44.3 1.9 17 1-17 35-51 (241)
360 PRK15177 Vi polysaccharide exp 96.4 0.0022 4.8E-08 43.5 1.9 17 1-17 21-37 (213)
361 cd03235 ABC_Metallic_Cations A 96.4 0.002 4.3E-08 43.7 1.6 17 1-17 33-49 (213)
362 PRK14960 DNA polymerase III su 96.4 0.0028 6E-08 49.8 2.6 20 1-20 45-64 (702)
363 cd03296 ABC_CysA_sulfate_impor 96.3 0.0022 4.9E-08 44.3 1.9 17 1-17 36-52 (239)
364 PRK09435 membrane ATPase/prote 96.3 0.0027 5.9E-08 45.9 2.4 17 1-17 64-80 (332)
365 cd03219 ABC_Mj1267_LivG_branch 96.3 0.002 4.4E-08 44.3 1.7 17 1-17 34-50 (236)
366 cd03265 ABC_DrrA DrrA is the A 96.3 0.0023 5E-08 43.6 1.9 17 1-17 34-50 (220)
367 COG0466 Lon ATP-dependent Lon 96.3 0.0026 5.6E-08 49.9 2.3 22 1-22 358-379 (782)
368 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0023 5.1E-08 43.3 1.9 17 1-17 34-50 (213)
369 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0024 5.1E-08 43.6 1.9 17 1-17 39-55 (221)
370 PRK14955 DNA polymerase III su 96.3 0.0029 6.4E-08 47.1 2.6 20 1-20 46-65 (397)
371 TIGR00101 ureG urease accessor 96.3 0.003 6.5E-08 42.5 2.4 17 1-17 9-25 (199)
372 PF03205 MobB: Molybdopterin g 96.3 0.0033 7.2E-08 39.8 2.4 17 1-17 8-24 (140)
373 cd03247 ABCC_cytochrome_bd The 96.3 0.0024 5.3E-08 42.0 1.9 17 1-17 36-52 (178)
374 PRK11331 5-methylcytosine-spec 96.3 0.0028 6.1E-08 47.5 2.4 18 1-18 202-219 (459)
375 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0025 5.3E-08 41.8 1.9 17 1-17 34-50 (173)
376 TIGR00763 lon ATP-dependent pr 96.3 0.0032 6.9E-08 50.9 2.9 22 1-22 355-376 (775)
377 COG2909 MalT ATP-dependent tra 96.3 0.11 2.4E-06 42.1 11.0 80 1-80 45-140 (894)
378 cd03215 ABC_Carb_Monos_II This 96.3 0.0024 5.3E-08 42.2 1.8 17 1-17 34-50 (182)
379 TIGR02655 circ_KaiC circadian 96.3 0.0045 9.8E-08 47.3 3.5 74 1-78 271-362 (484)
380 COG2326 Uncharacterized conser 96.3 0.052 1.1E-06 37.6 8.1 67 92-159 175-248 (270)
381 PRK10416 signal recognition pa 96.3 0.0029 6.4E-08 45.6 2.4 17 1-17 122-138 (318)
382 PRK13541 cytochrome c biogenes 96.3 0.0025 5.5E-08 42.6 1.9 17 1-17 34-50 (195)
383 cd03260 ABC_PstB_phosphate_tra 96.3 0.0025 5.5E-08 43.6 2.0 17 1-17 34-50 (227)
384 PRK14958 DNA polymerase III su 96.3 0.003 6.5E-08 48.5 2.5 20 1-20 46-65 (509)
385 KOG0739 AAA+-type ATPase [Post 96.3 0.026 5.7E-07 40.2 6.8 32 1-32 174-207 (439)
386 cd00983 recA RecA is a bacter 96.3 0.024 5.3E-07 41.0 6.9 75 1-78 63-142 (325)
387 PRK11124 artP arginine transpo 96.3 0.0025 5.5E-08 44.1 1.9 17 1-17 36-52 (242)
388 cd03223 ABCD_peroxisomal_ALDP 96.3 0.0026 5.7E-08 41.4 1.9 17 1-17 35-51 (166)
389 PF08477 Miro: Miro-like prote 96.3 0.0032 6.9E-08 38.3 2.2 17 1-17 7-23 (119)
390 PRK13695 putative NTPase; Prov 96.3 0.0033 7.1E-08 41.2 2.4 17 1-17 8-24 (174)
391 cd03246 ABCC_Protease_Secretio 96.3 0.0027 5.9E-08 41.6 2.0 17 1-17 36-52 (173)
392 cd03218 ABC_YhbG The ABC trans 96.3 0.0026 5.6E-08 43.7 1.9 17 1-17 34-50 (232)
393 PRK14963 DNA polymerase III su 96.3 0.0029 6.2E-08 48.5 2.3 19 1-19 44-62 (504)
394 cd03228 ABCC_MRP_Like The MRP 96.3 0.0027 6E-08 41.5 2.0 17 1-17 36-52 (171)
395 TIGR02012 tigrfam_recA protein 96.3 0.021 4.5E-07 41.3 6.5 75 1-78 63-142 (321)
396 cd03297 ABC_ModC_molybdenum_tr 96.3 0.0027 5.8E-08 43.1 1.9 17 1-17 31-47 (214)
397 PRK11034 clpA ATP-dependent Cl 96.3 0.0031 6.7E-08 50.6 2.5 22 1-22 496-517 (758)
398 PF06309 Torsin: Torsin; Inte 96.3 0.0037 8.1E-08 38.5 2.3 17 1-17 61-77 (127)
399 cd03257 ABC_NikE_OppD_transpor 96.3 0.0026 5.6E-08 43.5 1.8 17 1-17 39-55 (228)
400 PRK14250 phosphate ABC transpo 96.3 0.0027 5.8E-08 44.0 1.9 17 1-17 37-53 (241)
401 PRK07764 DNA polymerase III su 96.3 0.26 5.6E-06 40.4 13.1 20 1-20 45-64 (824)
402 cd03216 ABC_Carb_Monos_I This 96.3 0.0029 6.2E-08 41.1 1.9 17 1-17 34-50 (163)
403 cd03232 ABC_PDR_domain2 The pl 96.2 0.0028 6E-08 42.3 1.9 15 1-15 41-55 (192)
404 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0028 6E-08 43.7 1.9 17 1-17 35-51 (236)
405 PRK12377 putative replication 96.2 0.0071 1.5E-07 42.1 3.9 30 1-30 109-143 (248)
406 TIGR01618 phage_P_loop phage n 96.2 0.0021 4.5E-08 43.8 1.3 24 1-26 20-43 (220)
407 TIGR00064 ftsY signal recognit 96.2 0.0033 7.2E-08 44.3 2.3 17 1-17 80-96 (272)
408 TIGR03410 urea_trans_UrtE urea 96.2 0.0027 5.8E-08 43.6 1.8 17 1-17 34-50 (230)
409 PRK14729 miaA tRNA delta(2)-is 96.2 0.0043 9.4E-08 44.3 2.9 26 1-27 12-37 (300)
410 cd03266 ABC_NatA_sodium_export 96.2 0.0028 6.1E-08 43.1 1.9 17 1-17 39-55 (218)
411 PRK11248 tauB taurine transpor 96.2 0.0028 6.1E-08 44.3 1.9 17 1-17 35-51 (255)
412 TIGR01978 sufC FeS assembly AT 96.2 0.0027 5.9E-08 43.9 1.9 16 1-16 34-49 (243)
413 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0029 6.3E-08 42.7 1.9 17 1-17 34-50 (208)
414 PRK10247 putative ABC transpor 96.2 0.0029 6.3E-08 43.3 1.9 17 1-17 41-57 (225)
415 PRK14949 DNA polymerase III su 96.2 0.0032 7E-08 51.0 2.4 20 1-20 46-65 (944)
416 COG4133 CcmA ABC-type transpor 96.2 0.0031 6.7E-08 41.6 1.9 17 1-17 36-52 (209)
417 KOG1970 Checkpoint RAD17-RFC c 96.2 0.0034 7.4E-08 47.8 2.4 23 1-23 118-140 (634)
418 cd03116 MobB Molybdenum is an 96.2 0.0039 8.5E-08 40.3 2.4 18 1-18 9-26 (159)
419 PF10662 PduV-EutP: Ethanolami 96.2 0.003 6.6E-08 39.9 1.8 16 1-16 9-24 (143)
420 TIGR02770 nickel_nikD nickel i 96.2 0.0029 6.3E-08 43.5 1.8 17 1-17 20-36 (230)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0029 6.2E-08 40.2 1.7 17 1-17 34-50 (144)
422 PF01443 Viral_helicase1: Vira 96.2 0.0034 7.3E-08 43.1 2.2 17 1-17 6-22 (234)
423 cd03254 ABCC_Glucan_exporter_l 96.2 0.003 6.6E-08 43.3 1.9 17 1-17 37-53 (229)
424 PRK10584 putative ABC transpor 96.2 0.0031 6.8E-08 43.2 2.0 17 1-17 44-60 (228)
425 cd03234 ABCG_White The White s 96.2 0.0031 6.6E-08 43.2 1.9 18 1-18 41-58 (226)
426 PRK14242 phosphate transporter 96.2 0.0031 6.8E-08 43.9 2.0 16 1-16 40-55 (253)
427 PF01078 Mg_chelatase: Magnesi 96.2 0.0036 7.7E-08 42.1 2.1 18 1-18 30-47 (206)
428 PRK10744 pstB phosphate transp 96.2 0.0031 6.7E-08 44.2 1.9 17 1-17 47-63 (260)
429 PRK11264 putative amino-acid A 96.2 0.0032 6.9E-08 43.8 1.9 17 1-17 37-53 (250)
430 TIGR02323 CP_lyasePhnK phospho 96.2 0.0031 6.8E-08 43.9 1.9 17 1-17 37-53 (253)
431 PRK10908 cell division protein 96.2 0.0032 7E-08 43.0 1.9 17 1-17 36-52 (222)
432 PRK14088 dnaA chromosomal repl 96.2 0.054 1.2E-06 41.1 8.5 31 1-31 138-175 (440)
433 cd03214 ABC_Iron-Siderophores_ 96.2 0.0034 7.3E-08 41.4 1.9 17 1-17 33-49 (180)
434 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0032 7E-08 43.3 1.9 17 1-17 36-52 (234)
435 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0033 7.1E-08 43.5 1.9 17 1-17 35-51 (242)
436 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0033 7E-08 43.7 1.9 17 1-17 33-49 (246)
437 PRK14241 phosphate transporter 96.2 0.0033 7E-08 44.0 1.9 17 1-17 38-54 (258)
438 PRK14274 phosphate ABC transpo 96.2 0.0033 7.2E-08 44.0 2.0 17 1-17 46-62 (259)
439 KOG2028 ATPase related to the 96.2 0.0034 7.4E-08 45.8 2.0 18 1-18 170-187 (554)
440 PRK11701 phnK phosphonate C-P 96.1 0.0033 7.1E-08 44.0 1.9 17 1-17 40-56 (258)
441 PRK04296 thymidine kinase; Pro 96.1 0.0039 8.3E-08 41.6 2.1 17 1-17 10-26 (190)
442 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0034 7.4E-08 42.5 1.9 17 1-17 32-48 (211)
443 PRK13540 cytochrome c biogenes 96.1 0.0035 7.6E-08 42.1 1.9 17 1-17 35-51 (200)
444 PRK14969 DNA polymerase III su 96.1 0.0041 9E-08 48.0 2.5 20 1-20 46-65 (527)
445 cd03233 ABC_PDR_domain1 The pl 96.1 0.003 6.4E-08 42.5 1.6 17 1-17 41-57 (202)
446 PRK14247 phosphate ABC transpo 96.1 0.0034 7.4E-08 43.7 1.9 17 1-17 37-53 (250)
447 PRK13538 cytochrome c biogenes 96.1 0.0035 7.6E-08 42.2 1.9 17 1-17 35-51 (204)
448 TIGR01184 ntrCD nitrate transp 96.1 0.0035 7.7E-08 43.1 1.9 17 1-17 19-35 (230)
449 COG1122 CbiO ABC-type cobalt t 96.1 0.0032 7E-08 43.4 1.7 17 1-17 38-54 (235)
450 PRK14267 phosphate ABC transpo 96.1 0.0035 7.5E-08 43.7 1.9 17 1-17 38-54 (253)
451 PRK10771 thiQ thiamine transpo 96.1 0.0034 7.4E-08 43.1 1.8 17 1-17 33-49 (232)
452 PRK11247 ssuB aliphatic sulfon 96.1 0.0036 7.8E-08 43.8 1.9 17 1-17 46-62 (257)
453 TIGR01277 thiQ thiamine ABC tr 96.1 0.0036 7.9E-08 42.4 1.9 17 1-17 32-48 (213)
454 TIGR03005 ectoine_ehuA ectoine 96.1 0.0035 7.6E-08 43.7 1.9 17 1-17 34-50 (252)
455 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.0035 7.6E-08 42.9 1.8 17 1-17 56-72 (224)
456 COG4778 PhnL ABC-type phosphon 96.1 0.0039 8.5E-08 40.7 1.9 17 1-17 45-61 (235)
457 cd03252 ABCC_Hemolysin The ABC 96.1 0.0036 7.8E-08 43.1 1.9 17 1-17 36-52 (237)
458 PRK15056 manganese/iron transp 96.1 0.0035 7.6E-08 44.2 1.9 17 1-17 41-57 (272)
459 PRK09544 znuC high-affinity zi 96.1 0.0037 8E-08 43.6 1.9 17 1-17 38-54 (251)
460 PRK14248 phosphate ABC transpo 96.1 0.0037 8E-08 44.0 1.9 16 1-16 55-70 (268)
461 COG4525 TauB ABC-type taurine 96.1 0.0038 8.1E-08 41.7 1.8 17 1-17 39-55 (259)
462 PRK13648 cbiO cobalt transport 96.1 0.0037 8E-08 44.0 1.9 17 1-17 43-59 (269)
463 PRK11831 putative ABC transpor 96.1 0.0036 7.9E-08 44.1 1.9 17 1-17 41-57 (269)
464 PRK10895 lipopolysaccharide AB 96.1 0.0038 8.2E-08 43.2 1.9 17 1-17 37-53 (241)
465 TIGR02324 CP_lyasePhnL phospho 96.1 0.0038 8.2E-08 42.7 1.9 17 1-17 42-58 (224)
466 PF01926 MMR_HSR1: 50S ribosom 96.1 0.0045 9.7E-08 37.6 2.0 15 1-15 7-21 (116)
467 cd03245 ABCC_bacteriocin_expor 96.1 0.0038 8.3E-08 42.5 1.9 17 1-17 38-54 (220)
468 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.1 0.0038 8.2E-08 43.1 1.9 17 1-17 37-53 (238)
469 PRK09493 glnQ glutamine ABC tr 96.1 0.0038 8.3E-08 43.1 1.9 17 1-17 35-51 (240)
470 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.0055 1.2E-07 35.6 2.4 24 2-25 8-34 (99)
471 PRK14261 phosphate ABC transpo 96.1 0.0038 8.2E-08 43.5 1.9 15 1-15 40-54 (253)
472 TIGR03771 anch_rpt_ABC anchore 96.1 0.0038 8.3E-08 42.7 1.9 17 1-17 14-30 (223)
473 PRK14235 phosphate transporter 96.1 0.0039 8.5E-08 43.9 2.0 17 1-17 53-69 (267)
474 TIGR01189 ccmA heme ABC export 96.1 0.004 8.8E-08 41.7 1.9 17 1-17 34-50 (198)
475 PRK12422 chromosomal replicati 96.1 0.11 2.3E-06 39.6 9.6 30 1-30 149-183 (445)
476 cd03244 ABCC_MRP_domain2 Domai 96.1 0.004 8.8E-08 42.4 2.0 17 1-17 38-54 (221)
477 PRK14259 phosphate ABC transpo 96.0 0.0039 8.4E-08 43.9 1.9 16 1-16 47-62 (269)
478 PRK14240 phosphate transporter 96.0 0.0039 8.5E-08 43.3 1.9 16 1-16 37-52 (250)
479 PRK13649 cbiO cobalt transport 96.0 0.0038 8.2E-08 44.2 1.8 17 1-17 41-57 (280)
480 PRK14256 phosphate ABC transpo 96.0 0.004 8.7E-08 43.4 1.9 17 1-17 38-54 (252)
481 PRK05896 DNA polymerase III su 96.0 0.005 1.1E-07 47.9 2.6 19 1-19 46-64 (605)
482 cd03250 ABCC_MRP_domain1 Domai 96.0 0.0041 8.9E-08 41.9 1.9 17 1-17 39-55 (204)
483 TIGR00972 3a0107s01c2 phosphat 96.0 0.004 8.8E-08 43.2 1.9 17 1-17 35-51 (247)
484 cd01124 KaiC KaiC is a circadi 96.0 0.0052 1.1E-07 40.6 2.4 17 1-17 7-23 (187)
485 cd03267 ABC_NatA_like Similar 96.0 0.0041 8.9E-08 42.9 1.9 17 1-17 55-71 (236)
486 COG3638 ABC-type phosphate/pho 96.0 0.0042 9.1E-08 42.5 1.9 17 1-17 38-54 (258)
487 PRK14722 flhF flagellar biosyn 96.0 0.0049 1.1E-07 45.4 2.4 17 1-17 145-161 (374)
488 cd03253 ABCC_ATM1_transporter 96.0 0.0042 9E-08 42.8 1.9 17 1-17 35-51 (236)
489 PRK11300 livG leucine/isoleuci 96.0 0.0039 8.5E-08 43.5 1.8 17 1-17 39-55 (255)
490 COG4618 ArpD ABC-type protease 96.0 0.0036 7.9E-08 47.3 1.7 28 1-28 370-401 (580)
491 PRK14255 phosphate ABC transpo 96.0 0.0041 8.9E-08 43.3 1.9 16 1-16 39-54 (252)
492 cd03114 ArgK-like The function 96.0 0.0054 1.2E-07 39.2 2.3 17 1-17 7-23 (148)
493 PRK14262 phosphate ABC transpo 96.0 0.0042 9.1E-08 43.2 1.9 15 1-15 37-51 (250)
494 PRK14251 phosphate ABC transpo 96.0 0.0042 9.2E-08 43.2 1.9 17 1-17 38-54 (251)
495 PRK13645 cbiO cobalt transport 96.0 0.0041 8.9E-08 44.3 1.9 17 1-17 45-61 (289)
496 cd03236 ABC_RNaseL_inhibitor_d 96.0 0.0043 9.4E-08 43.4 1.9 17 1-17 34-50 (255)
497 PRK13539 cytochrome c biogenes 96.0 0.0044 9.6E-08 41.8 1.9 17 1-17 36-52 (207)
498 COG1219 ClpX ATP-dependent pro 96.0 0.0065 1.4E-07 43.5 2.7 25 1-25 105-129 (408)
499 COG1703 ArgK Putative periplas 96.0 0.0053 1.1E-07 43.4 2.3 17 1-17 59-75 (323)
500 PRK10733 hflB ATP-dependent me 96.0 0.005 1.1E-07 48.7 2.5 24 1-24 193-216 (644)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=5.9e-33 Score=188.09 Aligned_cols=169 Identities=33% Similarity=0.587 Sum_probs=154.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.||+++|+.+++++++++..+..+++++..+..++..|...|++....++...+.... ..+||+||||
T Consensus 39 ~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfP 118 (244)
T PLN02674 39 PPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFP 118 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999997654 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC----CCC-------------------------CCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR----NQG-------------------------RVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~~-------------------------~~~~~~~~ 127 (169)
++..++..+... ....++.+|+|++|.+++.+|+..| .+| |.+++.+.
T Consensus 119 Rt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~ 198 (244)
T PLN02674 119 RTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAV 198 (244)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHH
Confidence 999999877542 3468999999999999999999988 122 67888999
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
+.+|+..|.+...++.++|...+.++.||+++++++|++.|+
T Consensus 199 i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~ 240 (244)
T PLN02674 199 LKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQ 240 (244)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence 999999999999999999998888999999999999999873
No 2
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.7e-32 Score=172.47 Aligned_cols=167 Identities=54% Similarity=0.917 Sum_probs=155.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCC-ceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQN-KNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~i~d~~ 78 (169)
+|||||-|++..+++.+++.+++++|++|..... +++.+..+++++..|...|.+....+++..+..... .++++|||
T Consensus 16 GPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDGy 95 (195)
T KOG3079|consen 16 GPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFLIDGY 95 (195)
T ss_pred CCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEEecCC
Confidence 6999999999999999999999999999999888 999999999999999999999999999999987654 55999999
Q ss_pred CCChHHHHHHHhhcCC-CCCEEEEEEcCHHHHHHHHhcCCC--CCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 79 PRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRILSRNQ--GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
|+..++...|.. ... .+++++|++|+.+++.+|+..|.. .|.+++.+.+.+|+..|.+...|++++|...+.+..|
T Consensus 96 PR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i 174 (195)
T KOG3079|consen 96 PRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKI 174 (195)
T ss_pred CCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEe
Confidence 999999999998 444 799999999999999999999933 4889999999999999999999999999998899999
Q ss_pred eCCCChHHHHHhh
Q 040894 156 DAGRPIEEVFDEI 168 (169)
Q Consensus 156 d~~~~~~~v~~~i 168 (169)
+++.++++|.++|
T Consensus 175 ~a~~~~d~Vf~~v 187 (195)
T KOG3079|consen 175 NAERSVDDVFEEV 187 (195)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999999876
No 3
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=8.3e-32 Score=177.84 Aligned_cols=166 Identities=33% Similarity=0.630 Sum_probs=149.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.||+.+|+.+++++++++..+..++.++..+..++..+...+++.....+...+....+.++|+||||.
T Consensus 10 ~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ilDGfpr 89 (183)
T PRK14531 10 PPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGWLLDGFPR 89 (183)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcEEEeCCCC
Confidence 79999999999999999999999999999998888888888888888899999999988888777654467899999999
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
+..+...+... ....++.+|+|++|++++.+|+..| ++.++..+.+.+|+..|.....+..++|...+.++.||+
T Consensus 90 ~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~ 167 (183)
T PRK14531 90 TVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEA 167 (183)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 99888766542 3456889999999999999999999 888888899999999999999999999988788999999
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
++++++|.++|
T Consensus 168 ~~~~~~v~~~i 178 (183)
T PRK14531 168 QGSIEAITERI 178 (183)
T ss_pred CCCHHHHHHHH
Confidence 99999999876
No 4
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=1.2e-31 Score=177.21 Aligned_cols=168 Identities=29% Similarity=0.603 Sum_probs=152.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++.+|+++++++++++..+..++.++..+..++..+...++......+...+.... ..+||+||||
T Consensus 9 ~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~viDG~P 88 (186)
T PRK14528 9 PPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFLLDGFP 88 (186)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCC
Confidence 799999999999999999999999999999988888888889999999999999988888888887643 5789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
.+..++..+... ....+|.+|+|++|++++.+|+..| ..+|.+++.+.+.+|+..|.....++.++|...+.++.
T Consensus 89 r~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~ 168 (186)
T PRK14528 89 RTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQ 168 (186)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEE
Confidence 999998877652 2457999999999999999999998 56788899999999999999999999999998889999
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
||+++++++|++.|
T Consensus 169 i~~~~~~~~v~~~~ 182 (186)
T PRK14528 169 VNGVGSLEEVTSLI 182 (186)
T ss_pred EECCCCHHHHHHHH
Confidence 99999999999876
No 5
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.3e-31 Score=180.29 Aligned_cols=167 Identities=34% Similarity=0.593 Sum_probs=153.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES---QNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~i~d~ 77 (169)
||||||||+|+.|++.+++.+++.+++++..+..+++++..++.++..|..+|+++...++...+... ...+||+||
T Consensus 37 ~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDG 116 (261)
T PLN02459 37 CPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDG 116 (261)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCceEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999998753 367899999
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C-----------------------------------
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q----------------------------------- 118 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~----------------------------------- 118 (169)
||++..++..+.. . ..++.+|+|++|.+++.+|+..|. +
T Consensus 117 FPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L 194 (261)
T PLN02459 117 FPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKL 194 (261)
T ss_pred CCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCCccccccc
Confidence 9999999998876 4 468999999999999999999871 1
Q ss_pred -CCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 119 -GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
.|.++..+.+.+|+..|.+...++.++|...+.++.||+++++++|+++|+
T Consensus 195 ~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~ 246 (261)
T PLN02459 195 ITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLL 246 (261)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHH
Confidence 466788999999999999999999999998889999999999999999873
No 6
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=2.5e-31 Score=186.63 Aligned_cols=169 Identities=31% Similarity=0.583 Sum_probs=150.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++.||+.+++.+++++..+..++..+..+..++..+...|+++...++...+.... ..+||+||||
T Consensus 8 pPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ILDGFP 87 (333)
T PRK13808 8 PPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFILDGFP 87 (333)
T ss_pred CCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEEEeCCC
Confidence 799999999999999999999999999999988888999999999999999999999999988887643 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC-C-------CCCCCCcHHHHHHHHHHHhhchhhHHHHhhh
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR-N-------QGRVDDKIDTIKKRLNVYSESTLPVINYYSS 148 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
.+..+...|... ....||++|+|++|++++++|+..| . ..|.+++.+.+.+|+..|.....++.++|..
T Consensus 88 Rt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e 167 (333)
T PRK13808 88 RTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSE 167 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 999998876542 3457999999999999999999987 1 1366778899999999999999999999987
Q ss_pred cCcEEEEeCCCChHHHHHhhC
Q 040894 149 KGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 149 ~~~~~~id~~~~~~~v~~~i~ 169 (169)
.+.++.||++.++++|+++|.
T Consensus 168 ~~~lv~IDa~~siEEV~eeI~ 188 (333)
T PRK13808 168 KRKLLTVDGMMTIDEVTREIG 188 (333)
T ss_pred cCcEEEEECCCCHHHHHHHHH
Confidence 778999999999999999873
No 7
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=6.6e-31 Score=173.91 Aligned_cols=168 Identities=57% Similarity=0.961 Sum_probs=147.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+|+.|++++|+.+++++++++..+..++..+..+..++..+...|++....++...+....+.+||+||||.
T Consensus 7 ~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~vlDg~p~ 86 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFLIDGFPR 86 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEEEeCCCC
Confidence 79999999999999999999999999999988877788888888888999999999999999888765467899999999
Q ss_pred ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 81 NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
+..+...|... ....|+.+|+|++|++++.+|+..|. .++.+++.+.+.+++..|.....+..++|.....++.||
T Consensus 87 ~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id 166 (183)
T TIGR01359 87 NEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEIN 166 (183)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 98887766542 23579999999999999999999982 356677888999999999999999999898777789999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++++++++.++|
T Consensus 167 ~~~~~~~v~~~i 178 (183)
T TIGR01359 167 AEGSVEEVFEDV 178 (183)
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 8
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=7.6e-31 Score=174.25 Aligned_cols=168 Identities=32% Similarity=0.588 Sum_probs=148.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.||+.+|+.+++.|++++..+..++..+..++.++..+...+++....++...+.... +.++|+||||
T Consensus 8 ~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~vldg~p 87 (188)
T PRK14532 8 PPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAIFDGFP 87 (188)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCC
Confidence 799999999999999999999999999999888888888889999989999999999998888886543 6789999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
.+..+...+... ....||.+|+|++|++++.+|+..| ..+++++..+.+.+++..|.....+..++|...+.++.
T Consensus 88 r~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~ 167 (188)
T PRK14532 88 RTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTE 167 (188)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 999888766431 4567999999999999999999988 25688888888899999999998888888987778899
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
+|+++++++++++|
T Consensus 168 id~~~~~eev~~~I 181 (188)
T PRK14532 168 VDGMGSIEAVAASI 181 (188)
T ss_pred EECCCCHHHHHHHH
Confidence 99999999999887
No 9
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=7.5e-31 Score=176.88 Aligned_cols=168 Identities=40% Similarity=0.726 Sum_probs=151.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-C-CceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES-Q-NKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~i~d~~ 78 (169)
||||||||+|+.|++.+|+.+++++++++..+..++..+..+..++..+...+++....++...+... . +.+||+|||
T Consensus 7 ~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGf 86 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGFILDGF 86 (210)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCC
Confidence 79999999999999999999999999999988888888999999999999999999999999988763 2 678999999
Q ss_pred CCChHHHHHHHhhcCC-CCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHHHH
Q 040894 79 PRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKIDTI 128 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~~~ 128 (169)
|.+..++..+.. ... .++.+|+|++|.+++.+|+..|. + .|.++..+.+
T Consensus 87 Prt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i 165 (210)
T TIGR01351 87 PRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVV 165 (210)
T ss_pred CCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHH
Confidence 999999988877 555 68999999999999999999882 0 2667888999
Q ss_pred HHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 129 KKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
.+|+..|+....++.++|...+.++.||+++++++|++.|.
T Consensus 166 ~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~ 206 (210)
T TIGR01351 166 KKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRIL 206 (210)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHH
Confidence 99999999999999999998778999999999999998873
No 10
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=7.6e-31 Score=175.97 Aligned_cols=169 Identities=26% Similarity=0.496 Sum_probs=148.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+++.|++.+++.+++.+++++..+..+++++..++.++..+...|+++...++...+......+||+||||+
T Consensus 8 ~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPR 87 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPR 87 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCC
Confidence 79999999999999999999999999999988888999999999999999999999999999999876578899999999
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC----CC---------------------------CCCCCc-H
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR----NQ---------------------------GRVDDK-I 125 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R----~~---------------------------~~~~~~-~ 125 (169)
+..++..+... ....|+.+|+|++|.+++.+|+..| .+ .|.+++ .
T Consensus 88 t~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~e 167 (223)
T PRK14529 88 NKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDE 167 (223)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcH
Confidence 99999887642 3467999999999999999999988 11 256675 6
Q ss_pred HHHHHHHHHHhhc---hhhHHHHhhh-----cCcEEEEeCCCChHHHHHhhC
Q 040894 126 DTIKKRLNVYSES---TLPVINYYSS-----KGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 126 ~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~~~v~~~i~ 169 (169)
+.+.+|+..|.+. ..+..++|.. .+.++.||+++++++|++.|.
T Consensus 168 e~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~ 219 (223)
T PRK14529 168 EAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLL 219 (223)
T ss_pred HHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHH
Confidence 7999999999987 3467788884 567999999999999998873
No 11
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=1.7e-30 Score=176.81 Aligned_cols=169 Identities=60% Similarity=0.983 Sum_probs=149.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+|+.|++.+|+.+++.+++++..+...+..+..+.+.+..+...+++.....+...+......+||+||||.
T Consensus 51 ~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~~~~~ILDG~Pr 130 (234)
T PLN02200 51 GPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNKFLIDGFPR 130 (234)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCeEEecCCcc
Confidence 79999999999999999999999999999988888888888888888899999988888888877754467899999999
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCC
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRP 160 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 160 (169)
+..+...+.......||.+|+|++|++++.+|+.+|..++.+++.+.+.+++..|.....+..++|...+.++.||++++
T Consensus 131 t~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~ 210 (234)
T PLN02200 131 TEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGT 210 (234)
T ss_pred cHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 99888777652335799999999999999999999855677788899999999999999999999987778999999999
Q ss_pred hHHHHHhhC
Q 040894 161 IEEVFDEIK 169 (169)
Q Consensus 161 ~~~v~~~i~ 169 (169)
+++|++.|+
T Consensus 211 ~eeV~~~v~ 219 (234)
T PLN02200 211 VDEIFEQVR 219 (234)
T ss_pred HHHHHHHHH
Confidence 999998763
No 12
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=2.1e-30 Score=172.40 Aligned_cols=169 Identities=33% Similarity=0.667 Sum_probs=149.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
||||||||+|+.|++.+++.+++.|++++.....++..+..+..++..+...+.+....++...+...+..+||+||||.
T Consensus 14 ~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~~VlDGfpr 93 (191)
T PRK14527 14 PPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVRVIFDGFPR 93 (191)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCcEEEcCCCC
Confidence 79999999999999999999999999999988778888888888888899999998899998888765456799999999
Q ss_pred ChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 81 NEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
+..+...+... ....++.+|+|++|++++.+|+.+| ..+|.+++.+.+.+|+..|.....++.++|...+.++.|
T Consensus 94 ~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~i 173 (191)
T PRK14527 94 TLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRV 173 (191)
T ss_pred CHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEE
Confidence 98887665542 4467889999999999999999998 456888889999999999999999999999988889999
Q ss_pred eCCCChHHHHHhhC
Q 040894 156 DAGRPIEEVFDEIK 169 (169)
Q Consensus 156 d~~~~~~~v~~~i~ 169 (169)
|+++++++|+++|+
T Consensus 174 d~~~~~~~v~~~i~ 187 (191)
T PRK14527 174 DGLGTPDEVYARIL 187 (191)
T ss_pred ECCCCHHHHHHHHH
Confidence 99999999999874
No 13
>PRK02496 adk adenylate kinase; Provisional
Probab=99.98 E-value=7.8e-30 Score=168.81 Aligned_cols=167 Identities=33% Similarity=0.647 Sum_probs=147.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++.+++.+++.|++++..+..++..+..+..++..+...+.+....++...+.... ..+||+||||
T Consensus 9 ~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~vldGfP 88 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWILDGFP 88 (184)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEEEeCCC
Confidence 799999999999999999999999999999888888888888888889999999999999988887543 5689999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
.+..+...+... ....|+.+|+|++|++++.+|+..| ++.++..+.+.+++..|.....++.++|.....++.||
T Consensus 89 r~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Id 166 (184)
T PRK02496 89 RKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTID 166 (184)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 998887655532 3357899999999999999999999 77777888999999999999999999998767889999
Q ss_pred CCCChHHHHHhhC
Q 040894 157 AGRPIEEVFDEIK 169 (169)
Q Consensus 157 ~~~~~~~v~~~i~ 169 (169)
+++++++|.++|+
T Consensus 167 a~~~~~~V~~~i~ 179 (184)
T PRK02496 167 GNQSVEAVTTELK 179 (184)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999873
No 14
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=171.79 Aligned_cols=169 Identities=40% Similarity=0.734 Sum_probs=149.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.||+++|+.+++++++++..+..++..+..++.++..+...+++....++...+.... ..+||+||||
T Consensus 8 ~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~VlDGfP 87 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGFLLDGFP 87 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCEEEecCC
Confidence 799999999999999999999999999999888888889999999999999999999999998887643 4589999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCC-----------------------------CCCCCCcHHH
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRN-----------------------------QGRVDDKIDT 127 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~-----------------------------~~~~~~~~~~ 127 (169)
.+..++..+... ....++.+|+|++|.+++.+|+..|. ..|.++..+.
T Consensus 88 r~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~ 167 (215)
T PRK00279 88 RTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEET 167 (215)
T ss_pred CCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHH
Confidence 999888777431 34578999999999999999999882 1456788899
Q ss_pred HHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 128 IKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
+.+|+..|+....++.++|...+.++.||+++++++|++.|+
T Consensus 168 i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~ 209 (215)
T PRK00279 168 VRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADIL 209 (215)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHH
Confidence 999999999999999999998778999999999999999873
No 15
>PRK14526 adenylate kinase; Provisional
Probab=99.97 E-value=1.3e-29 Score=169.69 Aligned_cols=167 Identities=33% Similarity=0.578 Sum_probs=149.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+++.|++.+++.+++.+++++.....++..+..+..++..+...|++....++...+.... ..+||+||||
T Consensus 8 ~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ilDGfP 87 (211)
T PRK14526 8 PPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFILDGFP 87 (211)
T ss_pred CCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEEEECCC
Confidence 799999999999999999999999999999888888899999999999999999999999999887643 6789999999
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHHHHHH
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKIDTIKK 130 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~~~~~ 130 (169)
++..++..+.. ... ...+|+|++|++++.+|+..|. + +|.+++.+.+.+
T Consensus 88 R~~~Qa~~l~~-~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~ 165 (211)
T PRK14526 88 RNINQAKALDK-FLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKT 165 (211)
T ss_pred CCHHHHHHHHH-hcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHH
Confidence 99999988876 333 2468889999999999999871 1 477889999999
Q ss_pred HHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 131 RLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
|+..|.+...++.++|...+.++.||+++++++|.++|+
T Consensus 166 Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~ 204 (211)
T PRK14526 166 RLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLI 204 (211)
T ss_pred HHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence 999999999999999998888999999999999999873
No 16
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.97 E-value=1.3e-28 Score=166.52 Aligned_cols=167 Identities=22% Similarity=0.485 Sum_probs=148.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc--C-CCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE--S-QNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~i~d~ 77 (169)
||||||||+|+.||+.+|++++++|++++.....++.++..+.+++..+...+++....++...+.. . ...+||+||
T Consensus 14 ~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDG 93 (229)
T PTZ00088 14 APGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDG 93 (229)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEec
Confidence 7999999999999999999999999999998888888999999999999999999999999888875 2 367899999
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C-----------------------------------
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q----------------------------------- 118 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~----------------------------------- 118 (169)
||++..++..+.. . ..++.+|+|++|.+++.+|+..|. +
T Consensus 94 fPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~ 171 (229)
T PTZ00088 94 FPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQ 171 (229)
T ss_pred CCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCccccc
Confidence 9999999988765 3 579999999999999999998771 0
Q ss_pred CCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCc-EEEE---eCCCChHHHHHhhC
Q 040894 119 GRVDDKIDTIKKRLNVYSESTLPVINYYSSKGK-VRKI---DAGRPIEEVFDEIK 169 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~~~v~~~i~ 169 (169)
.|.++..+.+.+|+..|.+...++.++|...+. ++.+ |+++++++|.+.|+
T Consensus 172 ~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~ 226 (229)
T PTZ00088 172 KRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVL 226 (229)
T ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHH
Confidence 366677889999999999999999999998776 7666 79999999998763
No 17
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=5.6e-28 Score=163.46 Aligned_cols=164 Identities=35% Similarity=0.652 Sum_probs=138.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH-----hcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA-----ESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
||||||||+++.||+++++.+++.+++++... ..+...+. ...++..+...+++....++...+.. ..+||+
T Consensus 11 ~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~--~~~~Il 87 (215)
T PRK14530 11 APGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD--ADGFVL 87 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc--CCCEEE
Confidence 79999999999999999999999999999876 22334443 56677888889998888888888765 568999
Q ss_pred eCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C-------------------------CCCCCcHH
Q 040894 76 DGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q-------------------------GRVDDKID 126 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~-------------------------~~~~~~~~ 126 (169)
||||.+..+...+.. . ..++.+|+|++|.+++.+|+.+|. + .|.++..+
T Consensus 88 dG~pr~~~q~~~l~~-~-~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e 165 (215)
T PRK14530 88 DGYPRNLEQAEYLES-I-TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEE 165 (215)
T ss_pred cCCCCCHHHHHHHHH-h-cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHH
Confidence 999999988877654 2 358999999999999999998871 1 35567888
Q ss_pred HHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 127 TIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
.+.+|+..|.....++.++|...+.++.||+++++++|++.|+
T Consensus 166 ~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~ 208 (215)
T PRK14530 166 TVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQ 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHH
Confidence 9999999999999999999988778899999999999999873
No 18
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.97 E-value=1.4e-27 Score=158.59 Aligned_cols=167 Identities=49% Similarity=0.831 Sum_probs=140.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES--QNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~d~~ 78 (169)
||||||||+++.|++.+|+.+++.+++++..+..++..+..+...+..+...+.......+...+... .+.++|+|||
T Consensus 11 ~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~ 90 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGY 90 (188)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCC
Confidence 79999999999999999999999999998876666667777888888888888877777777665432 3778999999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
|....+...+.. ....|+.+|||++|++++.+|+..|. .++.++..+.+.+++..|.....+..++|...+.++.+|
T Consensus 91 ~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id 169 (188)
T TIGR01360 91 PREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKIN 169 (188)
T ss_pred CCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEE
Confidence 999888877766 56679999999999999999999882 457777788888999999988888888887666788999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.+++++.++|
T Consensus 170 ~~~~~~~v~~~i 181 (188)
T TIGR01360 170 AEGTVDDVFLQV 181 (188)
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.96 E-value=5.6e-28 Score=161.32 Aligned_cols=163 Identities=46% Similarity=0.795 Sum_probs=144.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.||+++|+.+++++++++..+...+..+..+..++..+...+.+....++...+.... +.+||+||||
T Consensus 7 ~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~vldg~P 86 (194)
T cd01428 7 PPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFILDGFP 86 (194)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEEEeCCC
Confidence 799999999999999999999999999999887777888888888888888899988899988887542 6789999999
Q ss_pred CChHHHHHHHhhcCC---CCCEEEEEEcCHHHHHHHHhcCC---------------------CCCCCCcHHHHHHHHHHH
Q 040894 80 RNEENLSAAENILKI---EPNAVLVFDCSEEEMTRRILSRN---------------------QGRVDDKIDTIKKRLNVY 135 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~R~---------------------~~~~~~~~~~~~~~~~~~ 135 (169)
.+..++..+.. ... .++.+|+|++|++++.+|+..|. ..+.++..+.+.+++..|
T Consensus 87 r~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y 165 (194)
T cd01428 87 RTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVY 165 (194)
T ss_pred CCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHH
Confidence 99998888877 444 79999999999999999999982 136678889999999999
Q ss_pred hhchhhHHHHhhhcCcEEEEeCCCChHHH
Q 040894 136 SESTLPVINYYSSKGKVRKIDAGRPIEEV 164 (169)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~id~~~~~~~v 164 (169)
.....++.++|...+.++.||+++++++|
T Consensus 166 ~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 166 KEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 99999999999988889999999999874
No 20
>PLN02842 nucleotide kinase
Probab=99.96 E-value=3.2e-27 Score=173.35 Aligned_cols=166 Identities=36% Similarity=0.695 Sum_probs=147.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~ 78 (169)
||||||||+++.|++.++..+++.+++++..+..++.++..+++++..+...+++....++...+.... ..+||+|||
T Consensus 5 ~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~ILDGf 84 (505)
T PLN02842 5 APASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLLDGY 84 (505)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEEeCC
Confidence 799999999999999999999999999999888899999999999999999999999999988886532 567999999
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC----C---------------------CCCCCcHHHHHHHHH
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN----Q---------------------GRVDDKIDTIKKRLN 133 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~----~---------------------~~~~~~~~~~~~~~~ 133 (169)
|.+..+...+.. ....||++|+|++|++++++|+.+|. + .|++++.+.+.+|+.
T Consensus 85 PRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~ 163 (505)
T PLN02842 85 PRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQ 163 (505)
T ss_pred CCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHH
Confidence 999998887777 67789999999999999999998771 1 466788999999999
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
.|++...++.+.|.. .++.||+++++++|+++|+
T Consensus 164 ~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~ 197 (505)
T PLN02842 164 IYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEIS 197 (505)
T ss_pred HHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHH
Confidence 999999999888863 5889999999999998873
No 21
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.96 E-value=4.6e-27 Score=150.89 Aligned_cols=143 Identities=43% Similarity=0.805 Sum_probs=125.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES-QNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~d~~~ 79 (169)
||||||||+|+.||+++|+.+++++++++..+..++..+..+++++..+..+|+++..+++...+... ...+||+||||
T Consensus 4 ~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGfP 83 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGFP 83 (151)
T ss_dssp STTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB-
T ss_pred CCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeecc
Confidence 79999999999999999999999999999999889999999999999999999999999999998865 48899999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcC
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKG 150 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (169)
.+..++..+... ....|+.+|+|++|.+++.+|+.. ++.+.+.+|+..|.+...++.++|...+
T Consensus 84 rt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 84 RTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998877652 467899999999999999999976 6678899999999999999999997643
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.95 E-value=2.6e-26 Score=149.73 Aligned_cols=162 Identities=41% Similarity=0.703 Sum_probs=145.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
||||||||+|+.|+++++++++|.+++++......++++..++.++..+...++......+...+.... ..++|+||||
T Consensus 8 ~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~P 87 (178)
T COG0563 8 PPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFP 87 (178)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeEEEeCCC
Confidence 799999999999999999999999999999988899999999999999989999999999999988753 2379999999
Q ss_pred CChHHHHHHHhh---cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 80 RNEENLSAAENI---LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
++..++..+... .+...+.++.++++.+....|+..|. .|.++..+.+.+++..|.....++..+|. +.||
T Consensus 88 R~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~-~r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id 161 (178)
T COG0563 88 RTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR-VREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTID 161 (178)
T ss_pred CcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc-ccccCCHHHHHHHHHHHHhcccchhhhhe-----eecc
Confidence 999998887753 34689999999999999999999881 17788999999999999999999988886 7899
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
+.++++++.+.|
T Consensus 162 ~~~~i~~v~~~i 173 (178)
T COG0563 162 GSGEIEEVLADI 173 (178)
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 23
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.90 E-value=3.6e-22 Score=132.99 Aligned_cols=166 Identities=39% Similarity=0.671 Sum_probs=148.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES-QNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~d~~~ 79 (169)
||||||+|+|..+++.++..++.+++++++.+..+++++.....++..+...++++...++...+... -..+|++||||
T Consensus 23 ~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~~~ildg~P 102 (235)
T KOG3078|consen 23 APGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQKGFILDGFP 102 (235)
T ss_pred CCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccccccccCCCC
Confidence 79999999999999999999999999999999999999999999999999999999988777777765 37899999999
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC----CC-------------------------CCCCCcHHHHHH
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR----NQ-------------------------GRVDDKIDTIKK 130 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R----~~-------------------------~~~~~~~~~~~~ 130 (169)
++..+...+.. ....+|.+|.|.+|.+.+.+|+..| .+ .|.+++.+.+.+
T Consensus 103 rt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~ 181 (235)
T KOG3078|consen 103 RTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKK 181 (235)
T ss_pred cchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHH
Confidence 99998888777 7889999999999999999999887 12 245788899999
Q ss_pred HHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 131 RLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
++..|++...+..++|.....+..+++.. +++|+..|
T Consensus 182 rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v 218 (235)
T KOG3078|consen 182 RLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNV 218 (235)
T ss_pred HHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHH
Confidence 99999999999999999888888888888 88877654
No 24
>PRK13949 shikimate kinase; Provisional
Probab=99.84 E-value=3.7e-19 Score=115.84 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=94.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
||||||||+++.||+.+++++++.|.++... .+..+..++ ..+...++......+...... ...+|..|
T Consensus 9 ~~GsGKstl~~~La~~l~~~~id~D~~i~~~------~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~--~~~vis~Ggg 80 (169)
T PRK13949 9 YMGAGKTTLGKALARELGLSFIDLDFFIENR------FHKTVGDIFAERGEAVFRELERNMLHEVAEF--EDVVISTGGG 80 (169)
T ss_pred CCCCCHHHHHHHHHHHcCCCeecccHHHHHH------HCccHHHHHHHhCHHHHHHHHHHHHHHHHhC--CCEEEEcCCc
Confidence 6999999999999999999999999988776 233344444 334445555556666664332 33344333
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc---HHHHHHHHHHHhhchhhHHHHhhhcCcEEE
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK---IDTIKKRLNVYSESTLPVINYYSSKGKVRK 154 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (169)
.+........+.. .+++|||++|++++.+|+..+..+||... .+.+. ..+.+........|.. +++.+
T Consensus 81 ~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~---~~i~~l~~~R~~~Y~~-ad~~i 151 (169)
T PRK13949 81 APCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELL---DFIIEALEKRAPFYRQ-AKIIF 151 (169)
T ss_pred ccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHH---HHHHHHHHHHHHHHHh-CCEEE
Confidence 4555555555554 67899999999999999975322454321 12222 2222223333333544 45554
Q ss_pred EeCCCChHHHHHhh
Q 040894 155 IDAGRPIEEVFDEI 168 (169)
Q Consensus 155 id~~~~~~~v~~~i 168 (169)
...+.+++++++.|
T Consensus 152 d~~~~~~~e~~~~I 165 (169)
T PRK13949 152 NADKLEDESQIEQL 165 (169)
T ss_pred ECCCCCHHHHHHHH
Confidence 44567999998876
No 25
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.82 E-value=1e-18 Score=111.75 Aligned_cols=150 Identities=24% Similarity=0.285 Sum_probs=103.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEE-e-C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVI-D-G 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d-~ 77 (169)
+|||||||+++.||+.++++++|+|.++.+. .++.+.+++ .+|+..++....+.+..++... ..+|- . |
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~------~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--~~ViaTGGG 81 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLPFIDTDQEIEKR------TGMSIAEIFEEEGEEGFRRLETEVLKELLEED--NAVIATGGG 81 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCCcccchHHHHHH------HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC--CeEEECCCc
Confidence 6899999999999999999999999999987 567788887 5677888888889999988863 33333 2 3
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
.....+....+.. ...+|||++|++++++|+... ..||.-....-.+.+........+. |...+ .+++++
T Consensus 82 ~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~~~~~~l~~L~~~R~~~---Y~e~a-~~~~~~ 151 (172)
T COG0703 82 AVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQRD-RKRPLLQTEDPREELEELLEERQPL---YREVA-DFIIDT 151 (172)
T ss_pred cccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhccc-cCCCcccCCChHHHHHHHHHHHHHH---HHHhC-cEEecC
Confidence 4444455555554 348999999999999999832 2444322221122233333344444 44333 367777
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+...++++++|
T Consensus 152 ~~~~~~v~~~i 162 (172)
T COG0703 152 DDRSEEVVEEI 162 (172)
T ss_pred CCCcHHHHHHH
Confidence 66668887766
No 26
>PRK01184 hypothetical protein; Provisional
Probab=99.81 E-value=1.3e-17 Score=110.50 Aligned_cols=156 Identities=23% Similarity=0.306 Sum_probs=98.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCc-----chHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSN-----DGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
||||||||+++ +++.+|+++++.|++++..+.. +.+ ++......... ..+ ......+...+....+..+|
T Consensus 9 ~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~~i~~~~~~~vv 84 (184)
T PRK01184 9 MPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE--LGM-DAVAKRTVPKIREKGDEVVV 84 (184)
T ss_pred CCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH--HCh-HHHHHHHHHHHHhcCCCcEE
Confidence 79999999997 6788999999999999887642 221 23333322211 111 22223333444444467899
Q ss_pred EeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 75 IDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDD--KIDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
+|++ ....+...+.. ....+..+|++++|++++.+|+..| +++.+ ..+.+.++....... +..+.+. .++
T Consensus 85 idg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~~--~~~~~~~-~ad- 156 (184)
T PRK01184 85 IDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELSW--GIGEVIA-LAD- 156 (184)
T ss_pred EeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhcc--CHHHHHH-hcC-
Confidence 9998 67666666655 3344678999999999999999988 44332 344555444432211 1222232 234
Q ss_pred EEEeCCCChHHHHHhh
Q 040894 153 RKIDAGRPIEEVFDEI 168 (169)
Q Consensus 153 ~~id~~~~~~~v~~~i 168 (169)
++|+++.+++++.++|
T Consensus 157 ~vI~N~~~~~~l~~~v 172 (184)
T PRK01184 157 YMIVNDSTLEEFRARV 172 (184)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 4667888999998876
No 27
>PRK13973 thymidylate kinase; Provisional
Probab=99.79 E-value=1.3e-17 Score=112.61 Aligned_cols=154 Identities=27% Similarity=0.360 Sum_probs=90.6
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcC---CCCCH-----------HHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEG---KLVPS-----------EIIVKLLQK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~~l~~ 63 (169)
++||||||+++.|++++ |+.++.. .. +.++..+..+++.+..+ ...+. +.....+..
T Consensus 11 ~dGsGKtTq~~~l~~~l~~~g~~~~~~-----~~-p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~ 84 (213)
T PRK13973 11 GEGAGKSTQIRLLAERLRAAGYDVLVT-----RE-PGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIRP 84 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE-----EC-CCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 6666543 00 11222344444433211 01111 111233444
Q ss_pred HHHcCCCceEEEeCCCC------------ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCC----CCCC-Cc
Q 040894 64 AMQESQNKNFVIDGFPR------------NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQ----GRVD-DK 124 (169)
Q Consensus 64 ~~~~~~~~~~i~d~~~~------------~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~----~~~~-~~ 124 (169)
.+.. +..+|+|+|.. .......+... ..+.||++|||++|++++.+|+..|.. ++.+ +.
T Consensus 85 ~l~~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~~ 162 (213)
T PRK13973 85 ALAR--GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKED 162 (213)
T ss_pred HHHC--CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhch
Confidence 4443 67788898731 11122222211 336799999999999999999998821 1222 23
Q ss_pred HHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 125 IDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+...+....|.+... .+ ...+.+||++++++++.++|
T Consensus 163 ~~~~~~~~~~y~~l~~----~~--~~~~~~Ida~~~~e~V~~~I 200 (213)
T PRK13973 163 LAFHEKRREAFLQIAA----QE--PERCVVIDATASPEAVAAEI 200 (213)
T ss_pred HHHHHHHHHHHHHHHH----hC--CCcEEEEcCCCCHHHHHHHH
Confidence 3455555555555331 12 23688999999999999987
No 28
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.79 E-value=6.9e-18 Score=112.38 Aligned_cols=159 Identities=27% Similarity=0.382 Sum_probs=99.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC--CCCCHHHH-------HHHHHHHHHcC--C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG--KLVPSEII-------VKLLQKAMQES--Q 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~l~~~~~~~--~ 69 (169)
+-||||||+++.|++++....+++ ++.+. +.+++++..++..+.++ ...+.... .+.+...+... .
T Consensus 11 iDGaGKTT~~~~L~~~l~~~g~~v--~~trE-P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pal~~ 87 (208)
T COG0125 11 IDGAGKTTQAELLKERLEERGIKV--VLTRE-PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPALKE 87 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeE--EEEeC-CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 369999999999999996554432 23333 44678899999988764 22333222 33344444321 2
Q ss_pred CceEEEeCCCCC------------hHHHHHHHhhcCC---CCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 040894 70 NKNFVIDGFPRN------------EENLSAAENILKI---EPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNV 134 (169)
Q Consensus 70 ~~~~i~d~~~~~------------~~~~~~~~~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 134 (169)
+..+|+|+|... ......+.. ... .||+++||++|+++..+|+.+| +...+..+.. -..
T Consensus 88 g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~-~~~~~~~PD~ti~Ldv~~e~al~R~~~r--~~~~~r~E~~---~~~ 161 (208)
T COG0125 88 GKVVICDRYVDSSLAYQGGGRGLDLDWVLALNE-FAPGGLKPDLTLYLDVPPEVALERIRKR--GELRDRFEKE---DDE 161 (208)
T ss_pred CCEEEECCcccHHHHhhhhccCCCHHHHHHHHH-hccCCCCCCEEEEEeCCHHHHHHHHHhc--CCccchhhhH---HHH
Confidence 778889997321 222233322 333 8999999999999999999988 2221122111 123
Q ss_pred HhhchhhHHHHhhhcC--cEEEEeCCCChHHHHHhh
Q 040894 135 YSESTLPVINYYSSKG--KVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~id~~~~~~~v~~~i 168 (169)
|.+.++..+..+.... .+++||++.++++|.+.|
T Consensus 162 f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i 197 (208)
T COG0125 162 FLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEI 197 (208)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHH
Confidence 4444444444444333 489999999999999876
No 29
>PRK13948 shikimate kinase; Provisional
Probab=99.78 E-value=1.1e-17 Score=109.68 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=94.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEE-e-C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVI-D-G 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d-~ 77 (169)
+|||||||+++.||+++++.++|.|.++.+. .+..+.+++ ..++..+++...+.+...+.. +..+|. . |
T Consensus 18 ~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~------~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~--~~~VIa~GgG 89 (182)
T PRK13948 18 FMGTGKSRIGWELSRALMLHFIDTDRYIERV------TGKSIPEIFRHLGEAYFRRCEAEVVRRLTRL--DYAVISLGGG 89 (182)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEECCHHHHHH------HhCCHHHHHHHhCHHHHHHHHHHHHHHHHhc--CCeEEECCCc
Confidence 5899999999999999999999999998876 344455555 456566777777777777653 333333 2 3
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
.+........+.. ...+|||++|++++.+|+..+ .||.-........+........+. |.. +.+++.+.
T Consensus 90 ~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~---Y~~-a~~~i~t~ 158 (182)
T PRK13948 90 TFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPV---YRQ-ATIHVSTD 158 (182)
T ss_pred EEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHH---HHh-CCEEEECC
Confidence 3333444444443 457999999999999999544 444321111111222222233333 433 45555556
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.++++++++|
T Consensus 159 ~~~~~ei~~~i 169 (182)
T PRK13948 159 GRRSEEVVEEI 169 (182)
T ss_pred CCCHHHHHHHH
Confidence 78999998876
No 30
>PLN02924 thymidylate kinase
Probab=99.78 E-value=2.1e-17 Score=111.61 Aligned_cols=152 Identities=28% Similarity=0.326 Sum_probs=92.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCC-CHHHH----------HHHHHHHHHcCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV-PSEII----------VKLLQKAMQESQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~l~~~~~~~~ 69 (169)
++||||||+++.|++++....+.. .+.+ ....++..+..+++++...... +.... ...+...+..
T Consensus 24 iDGsGKsTq~~~L~~~l~~~g~~v-~~~~-ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~pal~~-- 99 (220)
T PLN02924 24 LDRSGKSTQCAKLVSFLKGLGVAA-ELWR-FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMERKLKS-- 99 (220)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCc-eeee-CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 479999999999999997554443 1222 2123566777888777543322 22111 1223333433
Q ss_pred CceEEEeCCCCC-----------hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhc
Q 040894 70 NKNFVIDGFPRN-----------EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSES 138 (169)
Q Consensus 70 ~~~~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
+..+|+|+|... .+....+.. ..+.||++|||++|++++.+|...+ +...+..+.+.+....|.+
T Consensus 100 g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~~~~~~rv~~~Y~~- 175 (220)
T PLN02924 100 GTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEKLEFQKKVAKRFQT- 175 (220)
T ss_pred CCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--ccccccHHHHHHHHHHHHH-
Confidence 778899998441 111222222 4568999999999999999997533 2222333333333333333
Q ss_pred hhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 139 TLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 139 ~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.. ..+.+||++.++++|+++|
T Consensus 176 -------la~-~~~~vIDa~~sieeV~~~I 197 (220)
T PLN02924 176 -------LRD-SSWKIIDASQSIEEVEKKI 197 (220)
T ss_pred -------Hhh-cCEEEECCCCCHHHHHHHH
Confidence 332 3688899999999999887
No 31
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.77 E-value=4.3e-17 Score=102.08 Aligned_cols=103 Identities=26% Similarity=0.357 Sum_probs=69.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
||||||||+|+.||+++|+++++.+.++++.... |-.+ ..+..+.+.+..+...+ ......... ...+|++|.
T Consensus 8 ~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl-~ef~~~AE~~p~iD~~i-D~rq~e~a~---~~nvVlegr- 81 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSL-EEFSRYAEEDPEIDKEI-DRRQKELAK---EGNVVLEGR- 81 (179)
T ss_pred CCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCH-HHHHHHHhcCchhhHHH-HHHHHHHHH---cCCeEEhhh-
Confidence 7999999999999999999999999999998654 2222 22222222222222222 222222233 466888873
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...|.. . ..+|+.|||++|.++..+|+..|
T Consensus 82 -----LA~Wi~-k-~~adlkI~L~Apl~vRa~Ria~R 111 (179)
T COG1102 82 -----LAGWIV-R-EYADLKIWLKAPLEVRAERIAKR 111 (179)
T ss_pred -----hHHHHh-c-cccceEEEEeCcHHHHHHHHHHh
Confidence 222332 2 56899999999999999999999
No 32
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.77 E-value=8.7e-18 Score=108.50 Aligned_cols=148 Identities=27% Similarity=0.342 Sum_probs=93.7
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEE-Ee-CC
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFV-ID-GF 78 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~d-~~ 78 (169)
|||||||+++.||+.++++++|+|+++... .++.+.+++ ..|...++....+.+..++... ..+| +. |.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~--~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER------TGMSISEIFAEEGEEAFRELESEALRELLKEN--NCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhccC--cEEEeCCCCC
Confidence 799999999999999999999999999876 455666665 3455556677778887777753 3333 33 34
Q ss_pred CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHH-HHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 79 PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTI-KKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
.........+.. ...+|||++|++++.+|+..+. .||.-..... ......+. ...+. |...+. +++++
T Consensus 73 ~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~-~Rp~l~~~~~~~~~~~~~~-~R~~~---Y~~~a~-~~v~~ 141 (158)
T PF01202_consen 73 VLKEENRELLKE-----NGLVIYLDADPEELAERLRARD-NRPLLKGKMEHEEILELLF-EREPL---YEQAAD-IVVDT 141 (158)
T ss_dssp GGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHC-TSGGTCSHHHHHHHHHHHH-HHHHH---HHHHSS-EEEET
T ss_pred cCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCC-CCCCCCCCChHHHHHHHHH-HHHHH---HHhcCe-EEEeC
Confidence 455555555553 4589999999999999998762 2333221111 11122222 33343 333334 45555
Q ss_pred CCCh-HHHHHhh
Q 040894 158 GRPI-EEVFDEI 168 (169)
Q Consensus 158 ~~~~-~~v~~~i 168 (169)
+..+ ++++++|
T Consensus 142 ~~~~~~~i~~~i 153 (158)
T PF01202_consen 142 DGSPPEEIAEEI 153 (158)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 5544 9988876
No 33
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.77 E-value=3.1e-18 Score=113.60 Aligned_cols=157 Identities=22% Similarity=0.298 Sum_probs=86.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCC-CHHHH-----------HHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV-PSEII-----------VKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~l~~~~~~~ 68 (169)
+.||||||+++.|++++....+.. ++ ...+.++..+..+++++...... +.... ...+...+..
T Consensus 4 iDGsGKtT~~~~L~~~l~~~~~~~--~~-~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~- 79 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALKEKGYKV--II-TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKR- 79 (186)
T ss_dssp STTSSHHHHHHHHHHHHHHTTEEE--EE-EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcc--cc-cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 479999999999999985332220 00 01122344566666666522222 11111 1222333333
Q ss_pred CCceEEEeCCC------------CChHHHHHHHhh-cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHH
Q 040894 69 QNKNFVIDGFP------------RNEENLSAAENI-LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVY 135 (169)
Q Consensus 69 ~~~~~i~d~~~------------~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 135 (169)
+..+|+|+|. ........+... ....||++|||++|+++..+|+..|.. ......+. . .|
T Consensus 80 -g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~~~~~~~~-~----~~ 152 (186)
T PF02223_consen 80 -GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-KDDEEEED-L----EY 152 (186)
T ss_dssp -TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-TTTTTTHH-H----HH
T ss_pred -CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-cchHHHHH-H----HH
Confidence 7889999971 112222222221 122899999999999999999999822 11111111 1 12
Q ss_pred hhchhhHHHHhh-hcCcEEEEeCCCChHHHHHhh
Q 040894 136 SESTLPVINYYS-SKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~~~id~~~~~~~v~~~i 168 (169)
.+.....+.... ...+|++||++.++++++++|
T Consensus 153 ~~~~~~~y~~l~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 153 LRRVREAYLELAKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCHHHHHhhC
Confidence 222222222222 356899999999999999987
No 34
>PRK13974 thymidylate kinase; Provisional
Probab=99.76 E-value=1.9e-17 Score=111.82 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=102.0
Q ss_pred CCCCChhHHHHHHHHHhCCceec--hhHHHHHHHhcCCcchHHHHHHHHcC--CCCCHHHH---------HHHHHHHHHc
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS--AGDLLEAEAESGSNDGKMIREYKKEG--KLVPSEII---------VKLLQKAMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~--~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~l~~~~~~ 67 (169)
++||||||+++.|++.+.....- ...++....+.++.++..+++++... ...++... .+.+...+..
T Consensus 11 ~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~~~~i~~ 90 (212)
T PRK13974 11 IDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHVSKIIRP 90 (212)
T ss_pred CCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988532210 00111112234667888899888532 22222221 1222222221
Q ss_pred C--CCceEEEeCC----------CCChH--HHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 68 S--QNKNFVIDGF----------PRNEE--NLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 68 ~--~~~~~i~d~~----------~~~~~--~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
. .+..+|+|+| |.... ....+... ....||++|||++|++++.+|+..| +. + .++.+
T Consensus 91 ~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R--~d--D---~~e~~ 163 (212)
T PRK13974 91 ALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR--KP--D---RIEAE 163 (212)
T ss_pred HHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--cc--C---chhhh
Confidence 1 2667777876 32211 12222211 3457999999999999999999876 21 2 23445
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
...|.+...+.+..|...+.+..||++++++++.++|
T Consensus 164 ~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I 200 (212)
T PRK13974 164 GIEFLERVAEGFALIAEERNWKVISADQSIETISNEI 200 (212)
T ss_pred hHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHH
Confidence 5678888888888888777899999999999999876
No 35
>PRK06217 hypothetical protein; Validated
Probab=99.76 E-value=3.1e-17 Score=108.49 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=93.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+|+.|++.+|+++++.|++++... +... ....+.+.....+...+.. +..||+||++.
T Consensus 9 ~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~vi~G~~~ 74 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP--REGWVLSGSAL 74 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc--CCCEEEEccHH
Confidence 58999999999999999999999999987531 1111 0112333334444444433 56799999754
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC---CCC---CC----CcHHHHHHHHHHHhhc-----hhhHHHH
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN---QGR---VD----DKIDTIKKRLNVYSES-----TLPVINY 145 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~---~~----~~~~~~~~~~~~~~~~-----~~~~~~~ 145 (169)
.. ...+ ...+|.+|||++|.+++..|+.+|. .++ .. .....+.++...|... .......
T Consensus 75 ~~--~~~~----~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T PRK06217 75 GW--GDPL----EPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQ 148 (183)
T ss_pred HH--HHHH----HhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHH
Confidence 32 1122 2358899999999999999999882 122 11 1122344444445432 1111111
Q ss_pred h-h-hcCcEEEEeCCCChHHHHHhh
Q 040894 146 Y-S-SKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 146 ~-~-~~~~~~~id~~~~~~~v~~~i 168 (169)
+ . ....++.+++..+++++++.|
T Consensus 149 ~~~~~~~~~i~l~~~~~~~~~~~~i 173 (183)
T PRK06217 149 WLADQSCPVLRLDGDLTVEDLLDEV 173 (183)
T ss_pred HHHhCCCCeEEEcCCCCHHHHHHHH
Confidence 2 2 124778899999999998876
No 36
>PRK03839 putative kinase; Provisional
Probab=99.76 E-value=5.3e-17 Score=107.15 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=84.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE-SQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~d~~~ 79 (169)
+|||||||+++.||++++++++++|++++.. . ++..... .+. .....+...+.. ..+..+|+||+.
T Consensus 8 ~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~----~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~vIidG~~ 74 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-G----IGEEKDD---EME-----IDFDKLAYFIEEEFKEKNVVLDGHL 74 (180)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-C----CcccCCh---hhh-----cCHHHHHHHHHHhccCCCEEEEecc
Confidence 6999999999999999999999999998653 1 1110000 011 112233332221 124568999963
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCC-
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAG- 158 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~- 158 (169)
.. ...++.+|||+++++++.+|+..| +... ..........+... ...+.+.....++.||++
T Consensus 75 ~~-----------l~~~~~vi~L~~~~~~~~~Rl~~R--~~~~--~~~~~~~~~~~~~~--~~~~~~~~r~~~~~Id~~~ 137 (180)
T PRK03839 75 SH-----------LLPVDYVIVLRAHPKIIKERLKER--GYSK--KKILENVEAELVDV--CLCEALEEKEKVIEVDTTG 137 (180)
T ss_pred cc-----------ccCCCEEEEEECCHHHHHHHHHHc--CCCH--HHHHHHHHHHHHHH--HHHHHHHhcCCEEEEECCC
Confidence 21 124889999999999999999887 3211 11111111111111 112334445577889996
Q ss_pred CChHHHHHhh
Q 040894 159 RPIEEVFDEI 168 (169)
Q Consensus 159 ~~~~~v~~~i 168 (169)
.++++++++|
T Consensus 138 ~s~eev~~~I 147 (180)
T PRK03839 138 KTPEEVVEEI 147 (180)
T ss_pred CCHHHHHHHH
Confidence 6999999876
No 37
>PRK08118 topology modulation protein; Reviewed
Probab=99.74 E-value=9.5e-17 Score=104.36 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCC-C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGF-P 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~-~ 79 (169)
||||||||+|+.|++.+++++++.|.+++.. + ....+.+.....++..+. ...||+||. +
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~---~-------------w~~~~~~~~~~~~~~~~~---~~~wVidG~~~ 69 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFWKP---N-------------WEGVPKEEQITVQNELVK---EDEWIIDGNYG 69 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhccc---C-------------CcCCCHHHHHHHHHHHhc---CCCEEEeCCcc
Confidence 7999999999999999999999999988642 1 112333334555555555 457999994 3
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--C-CC--CCC------Cc-HHHHHHHHHHHhhchhhHHHH--
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--N-QG--RVD------DK-IDTIKKRLNVYSESTLPVINY-- 145 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~-~~--~~~------~~-~~~~~~~~~~~~~~~~~~~~~-- 145 (169)
.... ..+ ..+|.+|||++|.+++..|+..| . .+ +++ +. ...+.+++..|.....+.+..
T Consensus 70 ~~~~--~~l-----~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~~~~~~~ 142 (167)
T PRK08118 70 GTMD--IRL-----NAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRPSILKRL 142 (167)
T ss_pred hHHH--HHH-----HhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhHHHHHHH
Confidence 3332 112 24999999999999999999887 1 11 211 11 114666777777666553322
Q ss_pred --hhhcCcEEEEeCCCChHHHHHh
Q 040894 146 --YSSKGKVRKIDAGRPIEEVFDE 167 (169)
Q Consensus 146 --~~~~~~~~~id~~~~~~~v~~~ 167 (169)
+.....++++.+....+.-++.
T Consensus 143 ~~~~~~~~~~~l~~~~~~~~~l~~ 166 (167)
T PRK08118 143 NQLSEEKDIVILKSRNEVRLFLEK 166 (167)
T ss_pred HhcCCCCeEEEECCHHHHHHHHHh
Confidence 2223467778877666655443
No 38
>PRK13947 shikimate kinase; Provisional
Probab=99.74 E-value=2.1e-16 Score=103.52 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=87.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
+|||||||+++.||+.+|+++++.|.++.... +..+.+++ ..+...+.......++.+... +..+|..|
T Consensus 9 ~~GsGKst~a~~La~~lg~~~id~d~~~~~~~------g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~--~~~vi~~g~g 80 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT------GMTVAEIFEKDGEVRFRSEEKLLVKKLARL--KNLVIATGGG 80 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECchhhhhhc------CCcHHHHHHHhChHHHHHHHHHHHHHHhhc--CCeEEECCCC
Confidence 69999999999999999999999999887652 22233333 223323333334444444322 23333222
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH-HHHhhchhhHHHHhhhcCcEEEEe
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL-NVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
++........+.. ...+|||++|++++.+|+..| ..++..........+ ..|.. ..+ .|. .+++++.+
T Consensus 81 ~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r-~~rp~~~~~~~~~~i~~~~~~-r~~---~y~-~ad~~Idt 149 (171)
T PRK13947 81 VVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK-KSRPLLMVGDPEERIKELLKE-REP---FYD-FADYTIDT 149 (171)
T ss_pred CcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHH-HHH---HHH-hcCEEEEC
Confidence 3344444444443 457999999999999999876 223221111111111 22222 112 232 34677777
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.++++++++|
T Consensus 150 ~~~~~~~i~~~I 161 (171)
T PRK13947 150 GDMTIDEVAEEI 161 (171)
T ss_pred CCCCHHHHHHHH
Confidence 899999999886
No 39
>PRK13975 thymidylate kinase; Provisional
Probab=99.74 E-value=7.8e-16 Score=102.92 Aligned_cols=152 Identities=26% Similarity=0.346 Sum_probs=85.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-------HHH---HHHHHHcCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-------VKL---LQKAMQESQN 70 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---l~~~~~~~~~ 70 (169)
++||||||+++.|+++++..+... +.++..+..+++++..+...+.... .+. ++..+. .
T Consensus 10 ~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~---~ 78 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLK---K 78 (196)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 689999999999999998532110 1122234444444433211111100 111 222222 3
Q ss_pred ceEEEeCCCCCh-----------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHhhc
Q 040894 71 KNFVIDGFPRNE-----------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVD-DKIDTIKKRLNVYSES 138 (169)
Q Consensus 71 ~~~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~ 138 (169)
..+|+|+|...- .....+.. ....||++|||++|++++.+|+..| +++. +..+...+....|.+.
T Consensus 79 ~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~~~~~~~~y~~~ 155 (196)
T PRK13975 79 RDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEFLKKVQEKYLEL 155 (196)
T ss_pred CEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHHHHHHHHHHHHH
Confidence 568889874321 11111222 3357999999999999999999988 4332 2233344444555544
Q ss_pred hhhHHHHhhhcCcEEEEeCC-CChHHHHHhh
Q 040894 139 TLPVINYYSSKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 139 ~~~~~~~~~~~~~~~~id~~-~~~~~v~~~i 168 (169)
.. ...+.....+++||++ .++++++++|
T Consensus 156 ~~--~~~~~~~~~~~~Id~~~~~~eev~~~I 184 (196)
T PRK13975 156 AN--NEKFMPKYGFIVIDTTNKSIEEVFNEI 184 (196)
T ss_pred Hh--hcccCCcCCEEEEECCCCCHHHHHHHH
Confidence 32 1112223457889985 8999999876
No 40
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.73 E-value=2.7e-16 Score=102.98 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=84.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKK-EGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
+|||||||+++.||+.+|+++++.|.+..... +..+.+++. .+...+.+.....+.. +.. +..+|..|
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g~~~~~~~e~~~~~~-~~~--~~~vi~~ggg 80 (171)
T PRK03731 10 ARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREGWAGFRARESAALEA-VTA--PSTVIATGGG 80 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHH-hcC--CCeEEECCCC
Confidence 58999999999999999999999999887763 222222221 2212222233344432 221 33333333
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--CCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN--QGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
+.........+.. .+.+|||++|++++.+|+..|. ..++.-...........+.....+. |... ..++|
T Consensus 81 ~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~---y~~~-a~~~I 151 (171)
T PRK03731 81 IILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREAL---YREV-AHHII 151 (171)
T ss_pred ccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHH---HHHh-CCEEE
Confidence 3333333333333 6789999999999999998761 1222111011111122222222222 3222 23788
Q ss_pred eCCCChHHHHHhh
Q 040894 156 DAGRPIEEVFDEI 168 (169)
Q Consensus 156 d~~~~~~~v~~~i 168 (169)
|+++++++++++|
T Consensus 152 d~~~~~e~v~~~i 164 (171)
T PRK03731 152 DATQPPSQVVSEI 164 (171)
T ss_pred cCCCCHHHHHHHH
Confidence 9999999999876
No 41
>PRK13946 shikimate kinase; Provisional
Probab=99.73 E-value=3.9e-16 Score=103.26 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeCC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDGF- 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~- 78 (169)
+|||||||+++.||+++|+++++.|.++.... +... ..++ ..+...+.......+..++.. +..+|..|.
T Consensus 18 ~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~----~e~~~~~ge~~~~~~e~~~l~~l~~~--~~~Vi~~ggg 89 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTI----AEIFAAYGEPEFRDLERRVIARLLKG--GPLVLATGGG 89 (184)
T ss_pred CCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCH----HHHHHHHCHHHHHHHHHHHHHHHHhc--CCeEEECCCC
Confidence 58999999999999999999999998876653 2222 2222 223333344445555655543 344555442
Q ss_pred -CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCC----CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 79 -PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRV----DDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
.........+.. ..++|||++|++++.+|+..| .+++ .+..+.+. .......+ .|.. +++.
T Consensus 90 ~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r-~~rp~~~~~~~~~~i~----~~~~~R~~---~y~~-~dl~ 155 (184)
T PRK13946 90 AFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRR-DTRPLLRTADPKETLA----RLMEERYP---VYAE-ADLT 155 (184)
T ss_pred CcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCC-CCCCcCCCCChHHHHH----HHHHHHHH---HHHh-CCEE
Confidence 233333443333 458899999999999999887 2232 11122222 11111222 2333 4677
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
+.+++.+++++++.|
T Consensus 156 i~~~~~~~~~~~~~i 170 (184)
T PRK13946 156 VASRDVPKEVMADEV 170 (184)
T ss_pred EECCCCCHHHHHHHH
Confidence 778899999998876
No 42
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.72 E-value=1.9e-16 Score=105.83 Aligned_cols=153 Identities=21% Similarity=0.254 Sum_probs=81.9
Q ss_pred CCCCChhHHHHHHHHHhCC---ceechhHHHHHHHhcCCcchHHHHHHHHcCC--CCCHH------------HHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGF---RHLSAGDLLEAEAESGSNDGKMIREYKKEGK--LVPSE------------IIVKLLQK 63 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~---~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~~l~~ 63 (169)
++||||||+++.|+++++. .++-. ..+.++..+..++.++.... ..... ...+.+..
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~~ 84 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIKP 84 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999853 22211 00112334555555532211 11110 00122223
Q ss_pred HHHcCCCceEEEeCCCCCh------------HHHHHHHhhcCC--CCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHH
Q 040894 64 AMQESQNKNFVIDGFPRNE------------ENLSAAENILKI--EPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIK 129 (169)
Q Consensus 64 ~~~~~~~~~~i~d~~~~~~------------~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~ 129 (169)
.+.. +..+|+|+|...- .....+.. ... .||++|||++|++++.+|+..| +... ....
T Consensus 85 ~l~~--~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~~-~~~~-- 156 (195)
T TIGR00041 85 ALAE--GKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GELD-REEF-- 156 (195)
T ss_pred HHhC--CCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCcc-hHHH--
Confidence 3322 6678889753221 11111221 222 4999999999999999999988 3211 1110
Q ss_pred HHHHHHhhchhhHHHH-hhhcCcEEEEeCCCChHHHHHhh
Q 040894 130 KRLNVYSESTLPVINY-YSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. ..|.+.....+.. +.....+++||+++++++++++|
T Consensus 157 ~~-~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 157 EK-LDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HH-HHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 01 1122222222222 22245789999999999999876
No 43
>PRK08233 hypothetical protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=104.84 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=84.5
Q ss_pred CCCCChhHHHHHHHHHhC-CceechhHHHHHHHhcCCcchHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLG-FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV---PSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
+|||||||+|+.|++.++ ..++..|.+.... ....+......+... ........+...+.......+|+|
T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vivd 84 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------CPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYIIVD 84 (182)
T ss_pred CCCCCHHHHHHHHHhhCCCCceEEECCEEccc------CchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEEEEe
Confidence 689999999999999996 3344433332211 011112222222111 112223444444433212334556
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhh---cCcEE
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSS---KGKVR 153 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 153 (169)
+ |....... +. ..+|.+|||++|++++.+|+..| .......+.+.+++..|.....+.+..+.. ....+
T Consensus 85 ~-~~~~~~~~-~~----~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 156 (182)
T PRK08233 85 Y-PFAYLNSE-MR----QFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADI 156 (182)
T ss_pred e-ehhhccHH-HH----HHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeE
Confidence 4 33222111 22 24789999999999999998877 211112223445566666655555443221 23457
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
++|++.++++++++|
T Consensus 157 vId~~~~~e~i~~~i 171 (182)
T PRK08233 157 VLDGALSVEEIINQI 171 (182)
T ss_pred EEcCCCCHHHHHHHH
Confidence 899999999999876
No 44
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.70 E-value=1e-15 Score=100.09 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
|+||||||+++.|++.+++.+++.|..+..... ..+...+ ..+...+.....+.+...... +..+|.-|
T Consensus 12 ~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g------~~i~~~~~~~g~~~fr~~e~~~l~~l~~~--~~~vi~~ggg 83 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG------ADIGWVFDVEGEEGFRDREEKVINELTEK--QGIVLATGGG 83 (172)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC------cCHhHHHHHhCHHHHHHHHHHHHHHHHhC--CCEEEEcCCc
Confidence 699999999999999999999999987765521 1122222 123333333345555554432 33333222
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
..........+.. .+.+|||++|.+++.+|+..+ ..||.-........+..+.....+. |...+++.+.++
T Consensus 84 ~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~-~~rP~~~~~~~~~~~~~l~~~R~~~---Y~~~Ad~~idt~ 154 (172)
T PRK05057 84 SVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD-KKRPLLQVDDPREVLEALANERNPL---YEEIADVTIRTD 154 (172)
T ss_pred hhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHHHHHH---HHhhCCEEEECC
Confidence 2233343444444 568999999999999999765 2333221111111233344444444 433345555556
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.++++++++|
T Consensus 155 ~~s~~ei~~~i 165 (172)
T PRK05057 155 DQSAKVVANQI 165 (172)
T ss_pred CCCHHHHHHHH
Confidence 78999998876
No 45
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.70 E-value=5.9e-16 Score=103.06 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=94.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCC------CCCHHHH-----------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK------LVPSEII----------------- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----------------- 57 (169)
++||||||+++.|++.+|+++++.|++.+..+.++++....+...+.... .+.+...
T Consensus 9 ~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~~l~~i 88 (195)
T PRK14730 9 GIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERRWLENL 88 (195)
T ss_pred CCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHHHHHHH
Confidence 69999999999999988999999999999998888777777776663221 1221111
Q ss_pred -----HHHHHHHHHcCC-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 58 -----VKLLQKAMQESQ-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 58 -----~~~l~~~~~~~~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
...+...+.... ...+|+|- |...+. . ....+|.+|++++|.+++.+|+..| +. .+.+...++
T Consensus 89 ~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~----~~~~~D~ii~V~a~~e~r~~Rl~~R--~g--~s~e~~~~r 157 (195)
T PRK14730 89 IHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--K----LTDLCSEIWVVDCSPEQQLQRLIKR--DG--LTEEEAEAR 157 (195)
T ss_pred HhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--c----hHhCCCEEEEEECCHHHHHHHHHHc--CC--CCHHHHHHH
Confidence 111222222222 33445553 222221 1 1125899999999999999999988 21 233444545
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+.. ++ +... .....+ ++|+|+.+.+++.++|
T Consensus 158 i~~--Q~--~~~~-k~~~aD-~vI~N~g~~e~l~~qv 188 (195)
T PRK14730 158 INA--QW--PLEE-KVKLAD-VVLDNSGDLEKLYQQV 188 (195)
T ss_pred HHh--CC--CHHH-HHhhCC-EEEECCCCHHHHHHHH
Confidence 443 22 1111 112233 5789999999998876
No 46
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.69 E-value=1.4e-15 Score=99.87 Aligned_cols=151 Identities=28% Similarity=0.353 Sum_probs=85.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
||||||||+|+.||+.+++.+++.|.++...... . +...+ ..+...+.......+..+... ...+|..|
T Consensus 12 ~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~vi~~g~~ 83 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--S----IPEIFEEEGEAAFRELEEEVLAELLAR--HNLVISTGGG 83 (175)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--C----HHHHHHHHCHHHHHHHHHHHHHHHHhc--CCCEEEeCCC
Confidence 6999999999999999999999999988765321 1 22222 122222333444555555543 23344433
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
+.........+.. ...+|||++|++++.+|+..|. +++..........+..+.....+. |....++++.++
T Consensus 84 ~~~~~~~r~~l~~-----~~~~v~l~~~~~~~~~R~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~dl~idt~ 154 (175)
T PRK00131 84 AVLREENRALLRE-----RGTVVYLDASFEELLRRLRRDR-NRPLLQTNDPKEKLRDLYEERDPL---YEEVADITVETD 154 (175)
T ss_pred EeecHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHHHHHHHHHHHHHH---HHhhcCeEEeCC
Confidence 1112222222222 4589999999999999998762 122111001111111222222222 323346667778
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.+++++++.|
T Consensus 155 ~~~~~e~~~~I 165 (175)
T PRK00131 155 GRSPEEVVNEI 165 (175)
T ss_pred CCCHHHHHHHH
Confidence 99999998876
No 47
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.69 E-value=4.8e-16 Score=110.39 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=98.8
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
||||||||+|+.|++++ ++.+++.|.+.......+. .+.. .+...............+...+.. +..+|+|+++
T Consensus 10 ~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~--g~~vIid~~~ 84 (300)
T PHA02530 10 VPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGE-WGEY--KFTKEKEDLVTKAQEAAALAALKS--GKSVIISDTN 84 (300)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCc-cccc--ccChHHHHHHHHHHHHHHHHHHHc--CCeEEEeCCC
Confidence 79999999999999999 8999999776544322111 1100 000000000011223333444443 6789999988
Q ss_pred CChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC-CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 80 RNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR-NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
........+... .....-.+|+|++|.+++.+|+.+| ...-+.+......+++..|.....+.+..+.....++++|
T Consensus 85 ~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D 164 (300)
T PHA02530 85 LNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFD 164 (300)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEE
Confidence 877766655442 1122234799999999999999999 1112233334444778888888778876666555778888
Q ss_pred CCCChHHH
Q 040894 157 AGRPIEEV 164 (169)
Q Consensus 157 ~~~~~~~v 164 (169)
.++++.+.
T Consensus 165 ~dgtl~~~ 172 (300)
T PHA02530 165 IDGTLAKM 172 (300)
T ss_pred CCCcCcCC
Confidence 88776653
No 48
>PRK07933 thymidylate kinase; Validated
Probab=99.68 E-value=8.5e-16 Score=103.65 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=84.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC--CC--CCHHHH----------HHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG--KL--VPSEII----------VKLLQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~----------~~~l~~~~~ 66 (169)
+.||||||+++.|++++....+.+. +.+.+...++..+..+++.+... .. .+.... ...+...+.
T Consensus 8 ~dGsGKST~~~~L~~~L~~~g~~v~-~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~~I~p~l~ 86 (213)
T PRK07933 8 VDGAGKRTLTEALRAALEARGRSVA-TLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDELAGLLA 86 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE-EEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 4799999999999999953221110 00111012334455555555321 11 111111 112333333
Q ss_pred cCCCceEEEeCCCCCh--------------HHHHHHHhh-----cCCCCCEEEEEEcCHHHHHHHHhcCCCCCC------
Q 040894 67 ESQNKNFVIDGFPRNE--------------ENLSAAENI-----LKIEPNAVLVFDCSEEEMTRRILSRNQGRV------ 121 (169)
Q Consensus 67 ~~~~~~~i~d~~~~~~--------------~~~~~~~~~-----~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~------ 121 (169)
. +..+|+|+|...- .....+... ..+.||++|||++|+++..+|+.+| ++.
T Consensus 87 ~--g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R--~~~~~~~~~ 162 (213)
T PRK07933 87 A--HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR--AAQDADRAR 162 (213)
T ss_pred C--CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--ccccCCccc
Confidence 3 7788899973321 011111110 2247999999999999999999988 321
Q ss_pred ---CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 122 ---DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 122 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+...+.+.+....|.++... . ....+++||+++++++|.++|
T Consensus 163 d~~E~~~~f~~~v~~~Y~~~~~~----~-~~~~~~~ida~~~~e~v~~~i 207 (213)
T PRK07933 163 DAYERDDGLQQRTGAVYAELAAQ----G-WGGPWLVVDPDVDPAALAARL 207 (213)
T ss_pred ccccccHHHHHHHHHHHHHHHHh----c-CCCCeEEeCCCCCHHHHHHHH
Confidence 11122233233333332211 0 124789999999999999887
No 49
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.68 E-value=5.8e-16 Score=103.17 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=93.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
++||||||+++.|++ +|+++++.|.+.++.+.+++.....+.+.+..+ ..+.+...
T Consensus 10 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~L~~i~ 88 (194)
T PRK00081 10 GIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKKLEAIL 88 (194)
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHHHHHHH
Confidence 689999999999998 899999999999999887776666666555321 12222211
Q ss_pred ----HHHHHHHHHcCC-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 58 ----VKLLQKAMQESQ-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 58 ----~~~l~~~~~~~~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
...+...+.... ...+|+|. |...+. . ....+|.+|++++|++++.+|+..| .. .+.+....++
T Consensus 89 hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~--~----~~~~~D~vi~V~a~~e~~~~Rl~~R--~~--~s~e~~~~ri 157 (194)
T PRK00081 89 HPLIREEILEQLQEAESSPYVVLDI-PLLFEN--G----LEKLVDRVLVVDAPPETQLERLMAR--DG--LSEEEAEAII 157 (194)
T ss_pred HHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC--C----chhhCCeEEEEECCHHHHHHHHHHc--CC--CCHHHHHHHH
Confidence 111222222222 24556665 222211 1 2235899999999999999999987 22 2334455555
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..... ..+... ..+ ++|+|+++++++.++|
T Consensus 158 ~~Q~~----~~~~~~-~ad-~vI~N~g~~e~l~~qv 187 (194)
T PRK00081 158 ASQMP----REEKLA-RAD-DVIDNNGDLEELRKQV 187 (194)
T ss_pred HHhCC----HHHHHH-hCC-EEEECCCCHHHHHHHH
Confidence 43222 111111 122 7888999999998876
No 50
>PRK00625 shikimate kinase; Provisional
Probab=99.68 E-value=3.4e-15 Score=97.33 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=69.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEE-eC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVI-DG- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d~- 77 (169)
+|||||||+++.||++++++++|+|++++...... ....+.+++ ..++..+.......+..... ...+|. +|
T Consensus 8 ~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~---~~~VIs~GGg 82 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTSLPV---IPSIVALGGG 82 (173)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHHhcc---CCeEEECCCC
Confidence 69999999999999999999999999998763221 011344444 34444455544555554422 333443 33
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.+...+....+.. ...+|||++|++++.+|+..|
T Consensus 83 ~~~~~e~~~~l~~-----~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 83 TLMIEPSYAHIRN-----RGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred ccCCHHHHHHHhc-----CCEEEEEECCHHHHHHHHhcC
Confidence 3333334333332 468999999999999999988
No 51
>PLN02199 shikimate kinase
Probab=99.68 E-value=4.4e-15 Score=102.86 Aligned_cols=151 Identities=21% Similarity=0.176 Sum_probs=94.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEE-e-C
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVI-D-G 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d-~ 77 (169)
++||||||+++.||+.+|++++|.|.++++... +..+.+++ ..|+..+++...+.+..+... ...+|- . |
T Consensus 110 ~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--~~~VIStGGG 182 (303)
T PLN02199 110 MMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--YQVVVSTGGG 182 (303)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc--CCEEEECCCc
Confidence 589999999999999999999999999988632 33345555 456667777778888887553 233332 2 2
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCCCC---cHHHH---HHHHHHHhhchhhHHHHhhhcC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRVDD---KIDTI---KKRLNVYSESTLPVINYYSSKG 150 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 150 (169)
.+........+. ...+|||++|++++.+|+... ...||-- ..+.+ ...+........+. |.. +
T Consensus 183 ~V~~~~n~~~L~------~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl---Y~~-A 252 (303)
T PLN02199 183 AVIRPINWKYMH------KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA---YTN-A 252 (303)
T ss_pred ccCCHHHHHHHh------CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH---HHh-C
Confidence 333333333222 247999999999999999852 1234321 11111 12333333333343 554 4
Q ss_pred cEEEE------------eCCCChHHHHHhh
Q 040894 151 KVRKI------------DAGRPIEEVFDEI 168 (169)
Q Consensus 151 ~~~~i------------d~~~~~~~v~~~i 168 (169)
++.+. ..+.++++++.+|
T Consensus 253 d~~V~~~~~~~~~~~~~td~~s~~ei~~eI 282 (303)
T PLN02199 253 NARVSLENIAAKRGYKNVSDLTPTEIAIEA 282 (303)
T ss_pred CEEEecccccccccccccCCCCHHHHHHHH
Confidence 55544 4689999998876
No 52
>PRK13976 thymidylate kinase; Provisional
Probab=99.68 E-value=3.9e-15 Score=99.94 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCCChhHHHHHHHHHhCCc--eechhHHHHHHHhcCCcchHHHHHHHHcC-CCCCHHHH-------HHHH----HHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR--HLSAGDLLEAEAESGSNDGKMIREYKKEG-KLVPSEII-------VKLL----QKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~l----~~~~~ 66 (169)
+.||||||+++.|++++... .... ++... +.++.++..+++.+... ...+.... .+.+ ...+.
T Consensus 8 iDGsGKsTq~~~L~~~L~~~~g~~~v--~~~~e-P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~p~l~ 84 (209)
T PRK13976 8 IDGSGKTTQSRLLAEYLSDIYGENNV--VLTRE-PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVILPALL 84 (209)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcce--EEeeC-CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988532 1111 11111 23556677777776431 22222211 2222 23333
Q ss_pred cCCCceEEEeCCCCC------------hHHHHHHHhh-cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 67 ESQNKNFVIDGFPRN------------EENLSAAENI-LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 67 ~~~~~~~i~d~~~~~------------~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
. +..+|+|+|... .+....+... ..+.||++|||++|+++..+|+..| +......+.+.+...
T Consensus 85 ~--G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~~~~~l~~v~~ 160 (209)
T PRK13976 85 Q--GKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFMDLEFYDKVRK 160 (209)
T ss_pred C--CCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcccHHHHHHHHH
Confidence 3 788889997322 1122222210 2357999999999999999999654 322234445554445
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeC---CCC---hHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDA---GRP---IEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~---~~~---~~~v~~~i 168 (169)
.|.+.... ....+.++|+ +++ +++|+++|
T Consensus 161 ~Y~~l~~~------~~~~~~~id~~~~~~~~~~~e~v~~~i 195 (209)
T PRK13976 161 GFREIVIK------NPHRCHVITCIDAKDNIEDINSVHLEI 195 (209)
T ss_pred HHHHHHHh------CCCCeEEEECCCCccCcCCHHHHHHHH
Confidence 55543221 1235778887 445 99998876
No 53
>PRK08356 hypothetical protein; Provisional
Probab=99.68 E-value=1.4e-15 Score=101.52 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcC----C---cchHH----HHHHHHcCCCCCH----HHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESG----S---NDGKM----IREYKKEGKLVPS----EIIVKLLQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~----~---~~~~~----~~~~~~~~~~~~~----~~~~~~l~~~~ 65 (169)
||||||||+|+.|++ +|+.+++.++.++...... + ..+.. ...++..+...++ ......+...+
T Consensus 13 ~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~~~~~~ 91 (195)
T PRK08356 13 KIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILIRLAVDKK 91 (195)
T ss_pred CCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 799999999999965 8999999988654432221 1 00000 0122222222221 22233333333
Q ss_pred HcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCC--CcHHHHHHHHHHHhhchhhHH
Q 040894 66 QESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVD--DKIDTIKKRLNVYSESTLPVI 143 (169)
Q Consensus 66 ~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 143 (169)
.. ...+++||+ +...+...+.. . ...+||+++|++++.+|+..|...++. ...+.+.++.. ........
T Consensus 92 ~~--~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~-~~~~l~~~- 162 (195)
T PRK08356 92 RN--CKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDE-WEEKLYHT- 162 (195)
T ss_pred cc--CCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHH-HHHHhhhh-
Confidence 22 346899999 88888877765 2 358999999999999999988222211 12233322211 11110000
Q ss_pred HHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 144 NYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 144 ~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..+...+++++ +++.+.+++.++|
T Consensus 163 ~~~~~~aD~vI-~N~~~~e~~~~~i 186 (195)
T PRK08356 163 TKLKDKADFVI-VNEGTLEELRKKV 186 (195)
T ss_pred hhHHHhCcEEE-ECCCCHHHHHHHH
Confidence 11112345444 6678999998876
No 54
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.68 E-value=5.3e-15 Score=100.38 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=46.3
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCC---cHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCC--CChHHHHHhh
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDD---KIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAG--RPIEEVFDEI 168 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~v~~~i 168 (169)
+.||++|||++|++++.+|+.+| ++..+ ..+.+......|.+...+ .|.....++++|++ .++++++++|
T Consensus 141 ~~Pd~~i~l~~~~~~~~~Ri~~R--~~~~e~~~~~~yl~~l~~~y~~~~~~---~~~~~~~~i~id~~~~~~~e~i~~~I 215 (219)
T cd02030 141 LPPHLVIYLDVPVPEVQKRIKKR--GDPHEMKVTSAYLQDIENAYKKTFLP---EISEHSEVLQYDWTEAGDTEKVVEDI 215 (219)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc--CCchhhcccHHHHHHHHHHHHHHHHH---hhccCCCEEEEeCCChhhHHHHHHHH
Confidence 67999999999999999999988 44321 122222222222222111 12334588999998 9999999876
No 55
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.68 E-value=1.8e-15 Score=114.62 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=102.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEE-EeC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFV-IDG- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~d~- 77 (169)
+|||||||+++.||+.++++++|.|+++.+. .++.+.+++ ..|+..+++...+.+...+.. ...+| +.|
T Consensus 14 ~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~--~~~VIs~GGG 85 (542)
T PRK14021 14 MMGAGKTRVGKEVAQMMRLPFADADVEIERE------IGMSIPSYFEEYGEPAFREVEADVVADMLED--FDGIFSLGGG 85 (542)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHH------HCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCeEEECCCc
Confidence 5999999999999999999999999999887 466677776 567777888888888887654 23344 333
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
.+........+.. .......+|||++|++++.+|+..+ ..||--... ....+..+.+...+. |...+++.+.+.
T Consensus 86 ~v~~~~n~~~L~~-~~~~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~~-~~~~~~~l~~~R~~~---Y~~~Ad~~i~~~ 159 (542)
T PRK14021 86 APMTPSTQHALAS-YIAHGGRVVYLDADPKEAMERANRG-GGRPMLNGD-ANKRWKKLFKQRDPV---FRQVANVHVHTR 159 (542)
T ss_pred hhCCHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHhCC-CCCCCCCCC-cHHHHHHHHHHHHHH---HHhhCCEEEECC
Confidence 3444444443322 1122348999999999999999754 234432110 012222333333333 544456666667
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.++++++++|
T Consensus 160 ~~~~~~~~~~i 170 (542)
T PRK14021 160 GLTPQAAAKKL 170 (542)
T ss_pred CCCHHHHHHHH
Confidence 78999998876
No 56
>PRK04040 adenylate kinase; Provisional
Probab=99.68 E-value=6e-15 Score=97.59 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=90.4
Q ss_pred CCCCChhHHHHHHHHHh--CCceechhHHHHHHHhcCCc--chHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL--GFRHLSAGDLLEAEAESGSN--DGKMIREYKKEGKLVPSEIIVKLLQKAMQES-QNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--~~~~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~ 75 (169)
+|||||||+++.|++.+ ++.+++.++++...+..... ....++. -...............+... .+..+|+
T Consensus 10 ~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~~~~~~~~~ 85 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEMAGEGPVIV 85 (188)
T ss_pred CCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHhhcCCCEEE
Confidence 69999999999999999 89999999998776554221 1122221 11111111222233333322 2455888
Q ss_pred eCCCC-----C-hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhh
Q 040894 76 DGFPR-----N-EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRVDDKIDTIKKRLNVYSESTLPVINYYSS 148 (169)
Q Consensus 76 d~~~~-----~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
|++.. . ....+.+.. ....|+.+|++.+|+++..+|..+. .++|..++.+.+..+........ ..+..+..
T Consensus 86 ~~h~~i~~~~g~~~~~~~~~~-~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a-~~~a~~~g 163 (188)
T PRK04040 86 DTHATIKTPAGYLPGLPEWVL-EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAA-MAYAVLTG 163 (188)
T ss_pred eeeeeeccCCCCcCCCCHHHH-hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHH-HHHHHhcC
Confidence 98521 0 101111111 2347999999999999999998842 12676677666664443322211 11122222
Q ss_pred cCcEEEEeCCCChHHHHHhh
Q 040894 149 KGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 149 ~~~~~~id~~~~~~~v~~~i 168 (169)
....++++.++-+++.+++|
T Consensus 164 ~~~~iI~N~d~~~e~a~~~i 183 (188)
T PRK04040 164 ATVKIVENREGLLEEAAEEI 183 (188)
T ss_pred CeEEEEECCCCCHHHHHHHH
Confidence 23334444455588888775
No 57
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.68 E-value=2.8e-15 Score=100.88 Aligned_cols=157 Identities=24% Similarity=0.308 Sum_probs=82.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc--CCCCCHHHH-------HHHHHHHHHc--CC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE--GKLVPSEII-------VKLLQKAMQE--SQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~l~~~~~~--~~ 69 (169)
|+||||||+++.|++.++...... .+... +.++..+..++..+.. ....+.... ...+...+.. ..
T Consensus 11 ~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~ 87 (205)
T PRK00698 11 IDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIKPALAR 87 (205)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 689999999999999873221110 11111 1123345555555542 222222111 1111211111 12
Q ss_pred CceEEEeCCCCCh------------HHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc---HHHHHHHH
Q 040894 70 NKNFVIDGFPRNE------------ENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK---IDTIKKRL 132 (169)
Q Consensus 70 ~~~~i~d~~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---~~~~~~~~ 132 (169)
+..+|+|+|+... .....+... ....||++|||++|++++.+|+..| +..... ...+.++.
T Consensus 88 g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~~~~~~~~~~~~~~~ 165 (205)
T PRK00698 88 GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GELDRIEQEGLDFFERV 165 (205)
T ss_pred CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhhhHHHHHHH
Confidence 6788999864321 111122210 2256999999999999999999998 321111 11112222
Q ss_pred H-HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 N-VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
. .|.... +. ....+++||++.+++++.++|
T Consensus 166 ~~~y~~~~----~~--~~~~~~~Id~~~~~e~v~~~i 196 (205)
T PRK00698 166 REGYLELA----EK--EPERIVVIDASQSLEEVHEDI 196 (205)
T ss_pred HHHHHHHH----Hh--CCCeEEEEeCCCCHHHHHHHH
Confidence 1 222211 11 123678999999999999877
No 58
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.6e-15 Score=92.18 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHH---HHc--CCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKA---MQE--SQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~--~~~~~~i~ 75 (169)
.+||||||++..||+++++.+++.|++..... ...+..|....++-...++..+ +.. ..+...|+
T Consensus 3 VsG~GKStvg~~lA~~lg~~fidGDdlHp~aN----------i~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi 72 (161)
T COG3265 3 VSGSGKSTVGSALAERLGAKFIDGDDLHPPAN----------IEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVI 72 (161)
T ss_pred CCccCHHHHHHHHHHHcCCceecccccCCHHH----------HHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEE
Confidence 47999999999999999999999999876541 1122344444444444443332 222 12444555
Q ss_pred eCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 76 DGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
-+........+.+.. ..+ -..+|||+.+.+++.+|+..|.+ +- -....+. .+|.....|. ....++.|
T Consensus 73 ~CSALKr~YRD~LR~-~~~-~~~Fv~L~g~~~~i~~Rm~~R~g-HF-M~~~ll~---SQfa~LE~P~-----~de~vi~i 140 (161)
T COG3265 73 ACSALKRSYRDLLRE-ANP-GLRFVYLDGDFDLILERMKARKG-HF-MPASLLD---SQFATLEEPG-----ADEDVLTI 140 (161)
T ss_pred ecHHHHHHHHHHHhc-cCC-CeEEEEecCCHHHHHHHHHhccc-CC-CCHHHHH---HHHHHhcCCC-----CCCCEEEe
Confidence 544344444555554 322 35799999999999999999832 22 2333444 2333332222 22368999
Q ss_pred eCCCChHHHHHhh
Q 040894 156 DAGRPIEEVFDEI 168 (169)
Q Consensus 156 d~~~~~~~v~~~i 168 (169)
|.+++++++.+++
T Consensus 141 di~~~~e~vv~~~ 153 (161)
T COG3265 141 DIDQPPEEVVAQA 153 (161)
T ss_pred eCCCCHHHHHHHH
Confidence 9999999998875
No 59
>PRK06762 hypothetical protein; Provisional
Probab=99.67 E-value=2.1e-14 Score=93.56 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=85.1
Q ss_pred CCCCChhHHHHHHHHHh--CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHL--GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~ 78 (169)
+|||||||+|+.|++++ ++.+++.|.+....... .. .......+.....+...+.. +..+|+|+.
T Consensus 10 ~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~-~~----------~~~~~~~~~~~~~~~~~~~~--g~~vild~~ 76 (166)
T PRK06762 10 NSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRV-KD----------GPGNLSIDLIEQLVRYGLGH--CEFVILEGI 76 (166)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccc-cC----------CCCCcCHHHHHHHHHHHHhC--CCEEEEchh
Confidence 69999999999999998 46667876655433211 00 00011122223333333433 677888885
Q ss_pred CCChHH---HHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEE
Q 040894 79 PRNEEN---LSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKI 155 (169)
Q Consensus 79 ~~~~~~---~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (169)
...... ...+.. ....+..+|||++|.+++.+|...|...+. ...+.+..++..+... .....+++
T Consensus 77 ~~~~~~~~~~~~l~~-~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~-~~~~~l~~~~~~~~~~---------~~~~~~~~ 145 (166)
T PRK06762 77 LNSDRYGPMLKELIH-LFRGNAYTYYFDLSFEETLRRHSTRPKSHE-FGEDDMRRWWNPHDTL---------GVIGETIF 145 (166)
T ss_pred hccHhHHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHhccccccc-CCHHHHHHHHhhcCCc---------CCCCeEEe
Confidence 332222 223333 334467999999999999999998822221 2244555444332221 11244777
Q ss_pred eCCCChHHHHHhh
Q 040894 156 DAGRPIEEVFDEI 168 (169)
Q Consensus 156 d~~~~~~~v~~~i 168 (169)
+++.++++++++|
T Consensus 146 ~~~~~~~~v~~~i 158 (166)
T PRK06762 146 TDNLSLKDIFDAI 158 (166)
T ss_pred cCCCCHHHHHHHH
Confidence 8889999999886
No 60
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.67 E-value=1.2e-14 Score=97.29 Aligned_cols=156 Identities=23% Similarity=0.345 Sum_probs=83.2
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcCC---CCCHHHH-------HHHHHHHHHc
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK---LVPSEII-------VKLLQKAMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~l~~~~~~ 67 (169)
|+||||||+++.|++++ |..++.... ..+...+..++.++.... ..+.... ...+...+..
T Consensus 8 ~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 81 (200)
T cd01672 8 IDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIKP 81 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998 444433211 111223444444443221 1111110 1111111111
Q ss_pred --CCCceEEEeCCCCCh------------HHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 68 --SQNKNFVIDGFPRNE------------ENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 68 --~~~~~~i~d~~~~~~------------~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
..+..+|+|+|+..- .....+... ....|+.+|||++|++++.+|+.+| ++...... .
T Consensus 82 ~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~----~ 155 (200)
T cd01672 82 ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDDRDEQ----E 155 (200)
T ss_pred HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhh----h
Confidence 127788899864221 111111111 3357999999999999999999988 33222101 1
Q ss_pred HHHHhhchhhHHHHhhh--cCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSS--KGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~v~~~i 168 (169)
...|.+.....+..+.. ..+++++|++.++++++++|
T Consensus 156 ~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i 194 (200)
T cd01672 156 GLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEI 194 (200)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHH
Confidence 11122222222222221 24688999999999999876
No 61
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.66 E-value=2.6e-14 Score=92.89 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=82.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH----HhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE----AESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
||||||||+|+.|++.++..+++.|++.... ...+........ ..+.....+.+...+.. +...|++
T Consensus 6 ~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~--~~~~Vi~ 76 (163)
T TIGR01313 6 VAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDR-------WPWLQNLNDASTAAAAK--NKVGIIT 76 (163)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhH-------HHHHHHHHHHHHHHHhc--CCCEEEE
Confidence 7999999999999999999999998874321 111111000000 00001112233333333 3333554
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
...........+.. . .....+|||++|++++.+|+..| +......+.+...+..+.. +. .....+++||
T Consensus 77 ~t~~~~~~r~~~~~-~-~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~---~~----~~e~~~~~id 145 (163)
T TIGR01313 77 CSALKRHYRDILRE-A-EPNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALEE---PL----ADETDVLRVD 145 (163)
T ss_pred ecccHHHHHHHHHh-c-CCCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCC---CC----CCCCceEEEE
Confidence 33232333333332 2 33445799999999999999988 3211123344433333221 11 1123689999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.+++++.++|
T Consensus 146 ~~~~~~~~~~~~ 157 (163)
T TIGR01313 146 IDQPLEGVEEDC 157 (163)
T ss_pred CCCCHHHHHHHH
Confidence 999999999876
No 62
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.65 E-value=4.9e-15 Score=94.12 Aligned_cols=141 Identities=22% Similarity=0.395 Sum_probs=84.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
.||+||||+++.|+ .+|+.+++..+++... +... ...+ ...............+...+. ....|+|++
T Consensus 8 TPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~--~~de-~r~s~~vD~d~~~~~le~~~~---~~~~Ivd~H-- 75 (180)
T COG1936 8 TPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYT--EYDE-LRKSVIVDVDKLRKRLEELLR---EGSGIVDSH-- 75 (180)
T ss_pred CCCCchHHHHHHHH-HhCCceeeHHHHHHhc---CCee--ccCC-ccceEEeeHHHHHHHHHHHhc---cCCeEeech--
Confidence 59999999999999 8999999988877664 1000 0000 000011122222333444332 567888874
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHH-HHHHHHHHHhhchhhHHHHhhhcCcEEEE-eCC
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKID-TIKKRLNVYSESTLPVINYYSSKGKVRKI-DAG 158 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~ 158 (169)
+.. ..+.+|++|.|.++|+.+.+|+..| |.+.+... .+.+. .+.-......+.+ ..++.+ .++
T Consensus 76 -------~~h-l~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~eKI~ENveAE--i~~vi~~EA~E~~---~~v~evdtt~ 140 (180)
T COG1936 76 -------LSH-LLPDCDLVVVLRADPEVLYERLKGR--GYSEEKILENVEAE--ILDVILIEAVERF---EAVIEVDTTN 140 (180)
T ss_pred -------hhh-cCCCCCEEEEEcCCHHHHHHHHHHc--CCCHHHHHHHHHHH--HHHHHHHHHHHhc---CceEEEECCC
Confidence 222 3345899999999999999999999 76654421 22211 1111122333344 344455 458
Q ss_pred CChHHHHHhh
Q 040894 159 RPIEEVFDEI 168 (169)
Q Consensus 159 ~~~~~v~~~i 168 (169)
.+++++++.|
T Consensus 141 ~s~ee~~~~i 150 (180)
T COG1936 141 RSPEEVAEEI 150 (180)
T ss_pred CCHHHHHHHH
Confidence 9999999876
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=2.3e-15 Score=100.64 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=92.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCC-----HHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVP-----SEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------------ 57 (169)
++||||||+++.|+. +|+++++.|.+.+..+.+++.....+.+.++.+...+ +...
T Consensus 9 ~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~~le~i~ 87 (200)
T PRK14734 9 GIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTALLNAIT 87 (200)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999987 7999999999999998888776666766664432221 1111
Q ss_pred ----HHHHHHHHHcC--CC-ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHH
Q 040894 58 ----VKLLQKAMQES--QN-KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKK 130 (169)
Q Consensus 58 ----~~~l~~~~~~~--~~-~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 130 (169)
...+...+... .+ ..++++. |...+.. ....+|.+||+++|++++.+|+..|. + -+.+...+
T Consensus 88 hP~v~~~~~~~~~~~~~~~~~~vv~e~-plL~e~g------~~~~~D~vi~V~a~~e~ri~Rl~~R~-g---~s~e~~~~ 156 (200)
T PRK14734 88 HPRIAEETARRFNEARAQGAKVAVYDM-PLLVEKG------LDRKMDLVVVVDVDVEERVRRLVEKR-G---LDEDDARR 156 (200)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEe-eceeEcC------ccccCCeEEEEECCHHHHHHHHHHcC-C---CCHHHHHH
Confidence 11112222111 12 2333332 2222110 12358999999999999999998871 2 22345554
Q ss_pred HHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 131 RLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
++........ .. ..++ ++|+++.+++++.++|
T Consensus 157 ri~~Q~~~~~----k~-~~ad-~vI~N~g~~e~l~~~v 188 (200)
T PRK14734 157 RIAAQIPDDV----RL-KAAD-IVVDNNGTREQLLAQV 188 (200)
T ss_pred HHHhcCCHHH----HH-HhCC-EEEECcCCHHHHHHHH
Confidence 5443333211 11 2223 6889999999998876
No 64
>PRK04182 cytidylate kinase; Provisional
Probab=99.65 E-value=3.9e-14 Score=93.42 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=63.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
+|||||||+++.||+.+|+++++.|++++..... +..... +...... ...........+..... .+.++|++|..
T Consensus 8 ~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~Vi~g~~ 83 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEE-FNKYAEE-DPEIDKEIDRRQLEIAE--KEDNVVLEGRL 83 (180)
T ss_pred CCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHH-HHHHhhc-CchHHHHHHHHHHHHHh--cCCCEEEEEee
Confidence 5899999999999999999999999988876543 222111 1111111 11111111222222221 24567887731
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.. +. ....++++|||++|++++.+|+..|
T Consensus 84 ~~------~~--~~~~~~~~V~l~a~~e~~~~Rl~~r 112 (180)
T PRK04182 84 AG------WM--AKDYADLKIWLKAPLEVRAERIAER 112 (180)
T ss_pred cc------eE--ecCCCCEEEEEECCHHHHHHHHHhc
Confidence 11 00 1122789999999999999999987
No 65
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.64 E-value=1.6e-14 Score=102.72 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeCC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDGF- 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~- 78 (169)
+|||||||+++.|++.+|+++++.|..+.+.. +..+.+++ ..+...+.......+...+... +..+|..|.
T Consensus 141 ~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~-~~~VI~~Ggg 213 (309)
T PRK08154 141 LRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALYGQEGYRRLERRALERLIAEH-EEMVLATGGG 213 (309)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC-CCEEEECCCc
Confidence 58999999999999999999999998876652 22233332 2233344445556666666532 233333332
Q ss_pred -CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCC----CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 79 -PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRV----DDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
+........+.. ..++|||++|++++.+|+..|...++ ....+.+.+. .....+. |. ..+++
T Consensus 214 ~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~----~~~R~~~---y~-~ad~~ 280 (309)
T PRK08154 214 IVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRI----LASREPL---YA-RADAV 280 (309)
T ss_pred hhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHH----HHHHHHH---HH-hCCEE
Confidence 222233333333 45799999999999999988732232 1112233321 1222232 32 24555
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
+.++..++++++++|
T Consensus 281 I~t~~~s~ee~~~~I 295 (309)
T PRK08154 281 VDTSGLTVAQSLARL 295 (309)
T ss_pred EECCCCCHHHHHHHH
Confidence 555567999998876
No 66
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.64 E-value=1.9e-15 Score=100.36 Aligned_cols=157 Identities=24% Similarity=0.219 Sum_probs=89.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCC-CHHHH--------------HHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV-PSEII--------------VKLLQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~l~~~~ 65 (169)
.|||||||+|+.+++ +|++++++|+++++.++++++....+...++..... ..... ...++..+
T Consensus 10 ~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le~i~ 88 (201)
T COG0237 10 GIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLKLEKIL 88 (201)
T ss_pred CCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHHHHHHhh
Confidence 589999999999999 999999999999999888866555555555432211 11111 11111111
Q ss_pred HcCC-Cce-EEEeCC--CCChHHHHHHHhh-cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchh
Q 040894 66 QESQ-NKN-FVIDGF--PRNEENLSAAENI-LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTL 140 (169)
Q Consensus 66 ~~~~-~~~-~i~d~~--~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
...- ... .+.++. +..+..++.+... ....+|.+|++++|++++.+|+++| + . .+.+....++.. ++
T Consensus 89 hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~-~-~~~e~~~~~~~~--Q~-- 160 (201)
T COG0237 89 HPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D-G-LDEEDAEARLAS--QR-- 160 (201)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhc--C-C-CCHHHHHHHHHh--cC--
Confidence 1000 000 111110 0111233444441 1123789999999999999999998 4 2 333333333322 22
Q ss_pred hHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 141 PVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 141 ~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+..+.+...+ ++++|+.+++...++|
T Consensus 161 ~~~ek~~~ad--~vi~n~~~i~~l~~~i 186 (201)
T COG0237 161 DLEEKLALAD--VVIDNDGSIENLLEQI 186 (201)
T ss_pred CHHHHHhhcC--ChhhcCCCHHHHHHHH
Confidence 1122233222 6789999999888775
No 67
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.64 E-value=3.3e-14 Score=93.05 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
++||||||+|+.|++.+|+++++.|++++....................... .......+..... .+..+|++|...
T Consensus 8 ~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~Vi~g~~~ 84 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNVVLESRLA 84 (171)
T ss_pred CCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCEEEEeccc
Confidence 6899999999999999999999999888776543211111111111111101 1111222222221 256788888422
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhh-------hcCcEE
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYS-------SKGKVR 153 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 153 (169)
.. . ....++++|||++|++++.+|+..| +. ...+...+++..-.......+..+. ..++++
T Consensus 85 ~~------~--~~~~~d~~v~v~a~~~~r~~R~~~R--~~--~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~ 152 (171)
T TIGR02173 85 GW------I--VREYADVKIWLKAPLEVRARRIAKR--EG--KSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLV 152 (171)
T ss_pred ce------e--ecCCcCEEEEEECCHHHHHHHHHHc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence 11 0 1234789999999999999999988 22 1122222222111111111111111 223566
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
+.++..++++ ++.|
T Consensus 153 i~t~~~~~~~-~~~i 166 (171)
T TIGR02173 153 INTSNWDPNN-VDII 166 (171)
T ss_pred EECCCCCHHH-HHHH
Confidence 6666799998 7766
No 68
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.64 E-value=1.4e-14 Score=96.18 Aligned_cols=152 Identities=21% Similarity=0.282 Sum_probs=93.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc-----CCCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE-----GKLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------------ 57 (169)
++||||||+++.|++..++++++.|.+.++.+++++.....+.+.+.. ...+.+...
T Consensus 7 ~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~~le~il 86 (188)
T TIGR00152 7 GIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELKWLNNLL 86 (188)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999999877999999999999988877555545444421 112221111
Q ss_pred ----HHHHHHHHHcCC--CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 58 ----VKLLQKAMQESQ--NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 58 ----~~~l~~~~~~~~--~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
...+...+.... +..+|++. |...+. . ....+|.+|++++|.+++.+|+..| + ..+.+.+.++
T Consensus 87 hP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~--~----~~~~~D~vv~V~~~~~~~~~Rl~~R--~--~~s~~~~~~r 155 (188)
T TIGR00152 87 HPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN--K----LRSLCDRVIVVDVSPQLQLERLMQR--D--NLTEEEVQKR 155 (188)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC--C----cHHhCCEEEEEECCHHHHHHHHHHc--C--CCCHHHHHHH
Confidence 122233333221 23455554 232221 1 1224789999999999999999988 2 1233455555
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
+..... ..+.. ...+ ++|+++.+++++.++|.
T Consensus 156 ~~~q~~----~~~~~-~~ad-~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 156 LASQMD----IEERL-ARAD-DVIDNSATLADLVKQLE 187 (188)
T ss_pred HHhcCC----HHHHH-HhCC-EEEECCCCHHHHHHHHh
Confidence 544321 11111 1223 67889999999988763
No 69
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.63 E-value=1.2e-14 Score=93.56 Aligned_cols=103 Identities=27% Similarity=0.317 Sum_probs=61.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
||||||||+|+.|++.+++.+++.|.++...... .+..++ ..+...........+...... +..+|..|
T Consensus 7 ~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~vi~~g~~ 78 (154)
T cd00464 7 MMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM------SIPEIFAEEGEEGFRELEREVLLLLLTK--ENAVIATGGG 78 (154)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC------CHHHHHHHHCHHHHHHHHHHHHHHHhcc--CCcEEECCCC
Confidence 6999999999999999999999999988776322 111221 111111222222333333332 33333333
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+.........+ .....+|||++|++++.+|+..|
T Consensus 79 ~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r 112 (154)
T cd00464 79 AVLREENRRLL-----LENGIVVWLDASPEELLERLARD 112 (154)
T ss_pred ccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccC
Confidence 22222221212 23668999999999999999877
No 70
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.63 E-value=1.1e-14 Score=98.12 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=91.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc--------CC-CCCHHHH--------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE--------GK-LVPSEII-------------- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~-------------- 57 (169)
++||||||+++.|++ +|+++++.|.+.+..+.+++.....+...+.. +. .+.+...
T Consensus 13 ~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~~~~~~l 91 (208)
T PRK14731 13 GIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDPEKLGAL 91 (208)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCHHHHHHH
Confidence 689999999999987 89999999999988876655433333333311 11 0111111
Q ss_pred --------HHHHHHHHHcC--CC-ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHH
Q 040894 58 --------VKLLQKAMQES--QN-KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKID 126 (169)
Q Consensus 58 --------~~~l~~~~~~~--~~-~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~ 126 (169)
...+...+... .+ ..+|+|. |..++.. ....+|.+|++.+|.+++.+|+..| +. .+.+
T Consensus 92 ~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~~------~~~~~d~ii~V~a~~e~~~~Rl~~R--~~--~s~e 160 (208)
T PRK14731 92 NRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFESG------GDAGLDFIVVVAADTELRLERAVQR--GM--GSRE 160 (208)
T ss_pred HHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeecC------chhcCCeEEEEECCHHHHHHHHHHc--CC--CCHH
Confidence 11122222221 12 3344444 3332211 1234799999999999999999998 43 2456
Q ss_pred HHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 127 TIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+.+++.......... ...+ ++|+|+++++++.++|
T Consensus 161 ~~~~Ri~~q~~~~~~~-----~~ad-~vI~N~g~~e~l~~~i 196 (208)
T PRK14731 161 EIRRRIAAQWPQEKLI-----ERAD-YVIYNNGTLDELKAQT 196 (208)
T ss_pred HHHHHHHHcCChHHHH-----HhCC-EEEECCCCHHHHHHHH
Confidence 6676766544332222 1223 5788999999998876
No 71
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=4.1e-14 Score=93.13 Aligned_cols=159 Identities=23% Similarity=0.303 Sum_probs=87.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHh----cCCcc--hHHHHHHHHc--------------CCCCCHHHH---
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAE----SGSND--GKMIREYKKE--------------GKLVPSEII--- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~----~~~~~--~~~~~~~~~~--------------~~~~~~~~~--- 57 (169)
|+||||||+|+.||+++|+.+++++-++|...- .+..+ ...+...... ++.....+.
T Consensus 12 PagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs~~ir~~~ 91 (222)
T COG0283 12 PAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVSEEIRTEE 91 (222)
T ss_pred CCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhhhhhhhHH
Confidence 899999999999999999999999999987622 12111 1111111110 111111111
Q ss_pred ----------HHHHHHHH----Hc--CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCC
Q 040894 58 ----------VKLLQKAM----QE--SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQG 119 (169)
Q Consensus 58 ----------~~~l~~~~----~~--~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~ 119 (169)
...+...+ .. ..+.++|+||--.. .. ..+..++-|||++++++..+|-.+. ..|
T Consensus 92 V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiG--Tv------V~PdA~lKiFLtAS~e~RA~RR~~q~~~~g 163 (222)
T COG0283 92 VGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIG--TV------VFPDAELKIFLTASPEERAERRYKQLQAKG 163 (222)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCc--ce------ECCCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 01111111 11 11466888883111 10 4466889999999999999887654 223
Q ss_pred CCCCcHHHHHHHH--HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 120 RVDDKIDTIKKRL--NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 120 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.... .+.+.+.+ ..+.++.+.....-...+-+++.+++++++||+++|
T Consensus 164 ~~~~-~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~i 213 (222)
T COG0283 164 FSEV-FEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKI 213 (222)
T ss_pred Ccch-HHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHH
Confidence 2222 44444433 223333332211122233445555689999999987
No 72
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.62 E-value=3.1e-14 Score=92.32 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=95.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCC-----CCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK-----LVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------ 57 (169)
..||||||+++.+. .+|+++||+|.+.++.+++|++-...+.+.|.... .+.++..
T Consensus 9 giatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln~It 87 (225)
T KOG3220|consen 9 GIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQALNKIT 87 (225)
T ss_pred ccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHHHHHhcc
Confidence 36999999999996 68999999999999999998877777776664431 1111111
Q ss_pred -----HHHHHHHHHcC-CCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHH
Q 040894 58 -----VKLLQKAMQES-QNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKR 131 (169)
Q Consensus 58 -----~~~l~~~~~~~-~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~ 131 (169)
.+.++...... .|..+|+=..|..++. .... .+..+|.+.||.++..+|+..| . +-+.++.+.|
T Consensus 88 hP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~-~~~~-----~~~~tvvV~cd~~~Ql~Rl~~R--d--~lse~dAe~R 157 (225)
T KOG3220|consen 88 HPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA-KLLK-----ICHKTVVVTCDEELQLERLVER--D--ELSEEDAENR 157 (225)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH-hHHh-----heeeEEEEEECcHHHHHHHHHh--c--cccHHHHHHH
Confidence 11122211111 2444544334554444 2222 3567999999999999999998 2 2344455545
Q ss_pred HHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 132 LNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
++.-+... +.... .-+++||+.++++..++|
T Consensus 158 l~sQmp~~----~k~~~--a~~Vi~Nng~~~~l~~qv 188 (225)
T KOG3220|consen 158 LQSQMPLE----KKCEL--ADVVIDNNGSLEDLYEQV 188 (225)
T ss_pred HHhcCCHH----HHHHh--hheeecCCCChHHHHHHH
Confidence 44333221 22222 227899999999999876
No 73
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.61 E-value=2.7e-14 Score=97.55 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc-----CCCCCHHHHH-----------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE-----GKLVPSEIIV----------------- 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------- 58 (169)
++||||||+++.|++.+|++++|.|.+.++.+++++.....+.+.+.. +..+.+....
T Consensus 9 gIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~~~Le~i~ 88 (244)
T PTZ00451 9 GIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARRALGRIM 88 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 479999999999999899999999999999988876555555544421 1122222221
Q ss_pred -----HHHHHHHH------------cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCC
Q 040894 59 -----KLLQKAMQ------------ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRV 121 (169)
Q Consensus 59 -----~~l~~~~~------------~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~ 121 (169)
..+...+. ......+|+|. |..++.. + ....+|.+|++.+|.+++.+|+..| +.
T Consensus 89 HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E~~--~---~~~~~D~iv~V~a~~e~ri~RL~~R--~g- 159 (244)
T PTZ00451 89 NPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFETK--T---FTYFVSASVVVSCSEERQIERLRKR--NG- 159 (244)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhccC--c---hhhcCCeEEEEECCHHHHHHHHHHc--CC-
Confidence 11111121 01122456664 3322211 0 1124799999999999999999987 21
Q ss_pred CCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCC--CChHHHHHhh
Q 040894 122 DDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAG--RPIEEVFDEI 168 (169)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~v~~~i 168 (169)
.+.+...+++.. ++.. .+ .....+ ++|+|+ ++++++.++|
T Consensus 160 -~s~eea~~Ri~~--Q~~~--~e-k~~~aD-~VI~N~~~g~~~~L~~~v 201 (244)
T PTZ00451 160 -FSKEEALQRIGS--QMPL--EE-KRRLAD-YIIENDSADDLDELRGSV 201 (244)
T ss_pred -CCHHHHHHHHHh--CCCH--HH-HHHhCC-EEEECCCCCCHHHHHHHH
Confidence 234555555543 2221 11 122234 567778 9999998876
No 74
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=5e-14 Score=93.86 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=86.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC----CCCCHHHH-------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG----KLVPSEII------------------- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------- 57 (169)
++||||||+++.|++.+|+++++.|.+.+..+.+ +..-..+.+.++.. ..+.+...
T Consensus 14 ~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~Le~i~H 92 (204)
T PRK14733 14 GIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWLEDYLH 92 (204)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHHHhhhh
Confidence 5899999999999998999999999999988765 22222333333211 11222111
Q ss_pred ---HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Q 040894 58 ---VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNV 134 (169)
Q Consensus 58 ---~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 134 (169)
...+...+.......+|+|. |...+.... ....+|.+|++.+|.+++.+|+..| .. -+.+...+++..
T Consensus 93 P~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~----~~~~~D~vi~V~a~~e~ri~Rl~~R--d~--~s~~~a~~ri~~ 163 (204)
T PRK14733 93 PVINKEIKKQVKESDTVMTIVDI-PLLGPYNFR----HYDYLKKVIVIKADLETRIRRLMER--DG--KNRQQAVAFINL 163 (204)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe-chhhhccCc----hhhhCCEEEEEECCHHHHHHHHHHc--CC--CCHHHHHHHHHh
Confidence 12223333322233455554 332221100 0125799999999999999999987 21 123344433332
Q ss_pred HhhchhhHHHHhhhcCcEEEEeCCC-ChHHHHHhh
Q 040894 135 YSESTLPVINYYSSKGKVRKIDAGR-PIEEVFDEI 168 (169)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~id~~~-~~~~v~~~i 168 (169)
|+.... .. ..++ ++|+|++ +.+++.++|
T Consensus 164 --Q~~~ee--k~-~~aD-~VI~N~g~~~~~l~~~~ 192 (204)
T PRK14733 164 --QISDKE--RE-KIAD-FVIDNTELTDQELESKL 192 (204)
T ss_pred --CCCHHH--HH-HhCC-EEEECcCCCHHHHHHHH
Confidence 221111 11 2223 5777877 998887765
No 75
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=2e-14 Score=95.71 Aligned_cols=150 Identities=21% Similarity=0.151 Sum_probs=91.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
++||||||+++.|++ +|+.+++.|.+.+..+++++..-..+.+.++.. ..+.+...
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~L~~i~ 85 (196)
T PRK14732 7 MIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKALNELI 85 (196)
T ss_pred CCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHHHHHHh
Confidence 689999999999976 699999999999999888776555555544321 11222111
Q ss_pred ----HHHHHHHHHcCC-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 58 ----VKLLQKAMQESQ-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 58 ----~~~l~~~~~~~~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
...+...+.... +..+|+|. |...+.. ....+|.+|++++|++++.+|+..| +. .+.+...+++
T Consensus 86 hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E~~------~~~~~D~vi~V~a~~e~r~~RL~~R--~g--~s~e~a~~ri 154 (196)
T PRK14732 86 HPLVRKDFQKILQTTAEGKLVIWEV-PLLFETD------AYTLCDATVTVDSDPEESILRTISR--DG--MKKEDVLARI 154 (196)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEEe-eeeeEcC------chhhCCEEEEEECCHHHHHHHHHHc--CC--CCHHHHHHHH
Confidence 111222222211 33444453 3433221 1224799999999999999999988 22 2334555555
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.. ++ +..+.. ..++ ++|+|+.+++++..+|
T Consensus 155 ~~--Q~--~~~~k~-~~aD-~vI~N~~~~~~l~~~v 184 (196)
T PRK14732 155 AS--QL--PITEKL-KRAD-YIVRNDGNREGLKEEC 184 (196)
T ss_pred HH--cC--CHHHHH-HhCC-EEEECCCCHHHHHHHH
Confidence 43 22 222222 2234 5778888999998876
No 76
>PLN02422 dephospho-CoA kinase
Probab=99.58 E-value=4.5e-14 Score=95.64 Aligned_cols=150 Identities=21% Similarity=0.161 Sum_probs=89.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHc-----CCCCCHHHHH-----------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKE-----GKLVPSEIIV----------------- 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------------- 58 (169)
++||||||+++.|+ .+|++++|.|.+.++.+.+++..-..+.+.++. ...+.+....
T Consensus 9 ~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~Le~Il 87 (232)
T PLN02422 9 GIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQLLNRLL 87 (232)
T ss_pred CCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 58999999999998 589999999999999998877655555554422 1122222221
Q ss_pred -HH----HHHHHHc--CC-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHH
Q 040894 59 -KL----LQKAMQE--SQ-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKK 130 (169)
Q Consensus 59 -~~----l~~~~~~--~~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 130 (169)
.. +...+.. .. ...+|+|. |..++. . ....+|.+|++++|++++.+|+..| .. .+.+...+
T Consensus 88 HP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E~--~----~~~~~D~vI~V~a~~e~ri~RL~~R--~g--~s~eea~~ 156 (232)
T PLN02422 88 APYISSGIFWEILKLWLKGCKVIVLDI-PLLFET--K----MDKWTKPVVVVWVDPETQLERLMAR--DG--LSEEQARN 156 (232)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhhc--c----hhhhCCEEEEEECCHHHHHHHHHHc--CC--CCHHHHHH
Confidence 11 1111111 01 23445553 333221 1 2235899999999999999999998 21 23344444
Q ss_pred HHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 131 RLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
++..-... .+. ...++ ++|+|+++.+++..++
T Consensus 157 Ri~~Q~~~----eek-~~~AD-~VI~N~gs~e~L~~qv 188 (232)
T PLN02422 157 RINAQMPL----DWK-RSKAD-IVIDNSGSLEDLKQQF 188 (232)
T ss_pred HHHHcCCh----hHH-HhhCC-EEEECCCCHHHHHHHH
Confidence 44221111 011 12223 6888999999888765
No 77
>PRK07261 topology modulation protein; Provisional
Probab=99.58 E-value=4.4e-14 Score=92.29 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+|+.|++.+++++++.|.+.... + ....+.+.....+...+.. ..||+||...
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~---~~wIidg~~~ 68 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHFQP---N-------------WQERDDDDMIADISNFLLK---HDWIIDGNYS 68 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEecc---c-------------cccCCHHHHHHHHHHHHhC---CCEEEcCcch
Confidence 6999999999999999999999988776432 1 0112333345556666653 3499999755
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.......+. ..|.+|||++|..+|..|+.+|
T Consensus 69 ~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 69 WCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred hhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence 423223333 3899999999999999999887
No 78
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.57 E-value=4.1e-14 Score=89.94 Aligned_cols=107 Identities=25% Similarity=0.336 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcc---hHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSND---GKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~ 77 (169)
||||||||+++.|++.++..+++.|.+..........- ....... ........+...+.. +..+|+|+
T Consensus 7 ~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~--g~~~vvd~ 77 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALRN--GNSVVVDN 77 (143)
T ss_dssp STTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHHT--T-EEEEES
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHHc--CCCceecc
Confidence 79999999999999999999999988877653321110 0000000 011123444455554 77789987
Q ss_pred CCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 78 FPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 78 ~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..........+... ....+..+|+|++|.+++.+|+..|
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 78 TNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp S--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 65555555444432 3344668999999999999999999
No 79
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.57 E-value=3.8e-14 Score=93.39 Aligned_cols=108 Identities=26% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCC-----CCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGK-----LVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------ 57 (169)
+|||||||+++.|++ +|+++++.|.+.++.+.++......+...+.... .+.+...
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~l~~i~ 85 (179)
T cd02022 7 GIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKKLEAIT 85 (179)
T ss_pred CCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHHHHHHH
Confidence 689999999999999 8999999999999998877766666666653321 1222111
Q ss_pred ----HHHHHHHHHcCCC-ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 58 ----VKLLQKAMQESQN-KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 58 ----~~~l~~~~~~~~~-~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...+...+..... ..+|+|. |...+.. ....+|.+|++++|++++.+|+..|
T Consensus 86 hp~i~~~~~~~~~~~~~~~~vive~-plL~e~~------~~~~~D~vv~V~a~~~~ri~Rl~~R 142 (179)
T cd02022 86 HPLIRKEIEEQLAEARKEKVVVLDI-PLLFETG------LEKLVDRVIVVDAPPEIQIERLMKR 142 (179)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEe-hHhhcCC------cHHhCCeEEEEECCHHHHHHHHHHc
Confidence 1112222222222 3455564 2222211 1125799999999999999999988
No 80
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.56 E-value=1.4e-13 Score=103.03 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=87.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeC--
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDG-- 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~-- 77 (169)
+|||||||+++.||+.++++++++|+++.+. .+..+.+++ ..++..++....+.++..... ...+|-.|
T Consensus 8 ~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~--~~~Vis~Ggg 79 (488)
T PRK13951 8 MMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVER--DNVVVATGGG 79 (488)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhc--CCEEEECCCc
Confidence 6999999999999999999999999998774 233334433 344445566666777766543 23333233
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDA 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 157 (169)
..........+.. ..+|||++|++++.+|+..+ +||-.... ...+........+. |... ..+...
T Consensus 80 vv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~l---Y~~~--~~IDt~ 144 (488)
T PRK13951 80 VVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRPLLREG--KERIREIWERRKQF---YTEF--RGIDTS 144 (488)
T ss_pred cccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHH---Hhcc--cEEECC
Confidence 2223333333322 35999999999999999876 56532111 11122222222333 3221 234445
Q ss_pred CCChHHHHHhh
Q 040894 158 GRPIEEVFDEI 168 (169)
Q Consensus 158 ~~~~~~v~~~i 168 (169)
+.++++++++|
T Consensus 145 ~~s~~e~~~~i 155 (488)
T PRK13951 145 KLNEWETTALV 155 (488)
T ss_pred CCCHHHHHHHH
Confidence 77888887765
No 81
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.56 E-value=5e-13 Score=86.68 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=81.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH-Hh---cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE-AE---SGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
||||||||+++.|+..++..+++.|.+.... .. .+.......+ ..+.....+........ .+..+|+-
T Consensus 3 ~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~viv~ 74 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR-------KPWLQALNDAAFAMQRT-NKVSLIVC 74 (163)
T ss_pred CCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhH-------HHHHHHHHHHHHHHHHc-CCceEEEE
Confidence 6999999999999999999999987553211 00 0111100000 00011111222222222 24444553
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
.+ . ......+.. ....+-.+|||++|++++.+|+..|.. . ....+.+...+..+.... .....++++|
T Consensus 75 s~-~-~~~~r~~~~-~~~~~~~~v~l~a~~~~l~~Rl~~R~~-~-~a~~~vl~~Q~~~~ep~~-------~~e~~~~~id 142 (163)
T PRK11545 75 SA-L-KKHYRDLLR-EGNPNLSFIYLKGDFDVIESRLKARKG-H-FFKTQMLVTQFETLQEPG-------ADETDVLVVD 142 (163)
T ss_pred ec-c-hHHHHHHHH-ccCCCEEEEEEECCHHHHHHHHHhccC-C-CCCHHHHHHHHHHcCCCC-------CCCCCEEEEe
Confidence 22 2 333333333 344567899999999999999999932 2 234444443333232110 0112578999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
+..+++++.+++
T Consensus 143 ~~~~~~~~~~~~ 154 (163)
T PRK11545 143 IDQPLEGVVAST 154 (163)
T ss_pred CCCCHHHHHHHH
Confidence 999998887765
No 82
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.56 E-value=1.4e-14 Score=94.97 Aligned_cols=145 Identities=26% Similarity=0.335 Sum_probs=83.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
+.||||||+++.|++ +|+++++.|.+.+..+.++...-..+.+.+... ..+.+...
T Consensus 8 ~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~~L~~ii 86 (180)
T PF01121_consen 8 GIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLKKLENII 86 (180)
T ss_dssp STTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHHHHHHHH
Confidence 479999999999988 899999999999999888877766776666432 22223222
Q ss_pred ----HHHHHHHHHcCCC-ceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 040894 58 ----VKLLQKAMQESQN-KNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRL 132 (169)
Q Consensus 58 ----~~~l~~~~~~~~~-~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~ 132 (169)
...+...+..... ..+|+|. |..++. . ....+|.+|++.+|.+++.+|+..|. + -+.+...+++
T Consensus 87 hP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R~-~---~~~~~~~~ri 155 (180)
T PF01121_consen 87 HPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--G----LEKLCDEVIVVYAPEEIRIKRLMERD-G---LSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T----GGGGSSEEEEEE--HHHHHHHHHHHH-T---STHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--h----HhhhhceEEEEECCHHHHHHHHHhhC-C---CcHHHHHHHH
Confidence 1112222222223 4566664 343332 1 22358999999999999999999871 1 2233333332
Q ss_pred HHHhhchhhHHHHhhhcCcEEEEeCCCChHH
Q 040894 133 NVYSESTLPVINYYSSKGKVRKIDAGRPIEE 163 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ 163 (169)
. ...+..+.... ++ ++|+|+++.++
T Consensus 156 ~----~Q~~~~~k~~~-ad-~vI~N~g~~~~ 180 (180)
T PF01121_consen 156 A----SQMPDEEKRKR-AD-FVIDNNGSLEE 180 (180)
T ss_dssp H----TS--HHHHHHH--S-EEEE-SSHHH-
T ss_pred H----hCCCHHHHHHh-CC-EEEECCCCCCC
Confidence 2 11111112222 23 67888887764
No 83
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.56 E-value=6.8e-14 Score=102.34 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcC-----CCCCHHHH------------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEG-----KLVPSEII------------------ 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------ 57 (169)
++||||||+++.|++ +|++++|.|.+.++.+++++..-..+.+.++.. ..+.+...
T Consensus 9 ~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~le~i~ 87 (395)
T PRK03333 9 GIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAVLNGIV 87 (395)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999988 899999999999998887765444444444221 12222221
Q ss_pred ----HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Q 040894 58 ----VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLN 133 (169)
Q Consensus 58 ----~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 133 (169)
...+...+...++..+|+.+.|...+.. ....+|.+||+++|.+++.+|+..| ++. ..+....++.
T Consensus 88 hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~------~~~~~D~iI~V~ap~e~ri~Rl~~r-Rg~---s~~~a~~ri~ 157 (395)
T PRK03333 88 HPLVGARRAELIAAAPEDAVVVEDIPLLVESG------MAPLFHLVVVVDADVEVRVRRLVEQ-RGM---AEADARARIA 157 (395)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC------chhhCCEEEEEECCHHHHHHHHHhc-CCC---CHHHHHHHHH
Confidence 1122233333334456665544433221 1235799999999999999999874 132 1222222222
Q ss_pred HHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 134 VYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.-.. ..+ ....++ ++|+++.+++++.++|
T Consensus 158 ~Q~~-~e~----k~~~AD-~vIdN~~s~e~l~~~v 186 (395)
T PRK03333 158 AQAS-DEQ----RRAVAD-VWLDNSGTPDELVEAV 186 (395)
T ss_pred hcCC-hHH----HHHhCC-EEEECCCCHHHHHHHH
Confidence 1111 111 112223 6788999998888765
No 84
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.55 E-value=3.1e-13 Score=90.17 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=40.2
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcCCCCCCCC---cHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCC-ChH
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSRNQGRVDD---KIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGR-PIE 162 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~ 162 (169)
...||++|||++|++++.+|+.+| ++..+ ..+.+.+....|....... +....++++||++. ++.
T Consensus 122 ~~~pd~~i~l~~~~~~~~~Ri~~R--~r~~e~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~vid~~~~~~~ 190 (193)
T cd01673 122 LLPPDLVIYLDASPETCLKRIKKR--GRPEEQGIPLDYLEDLHEAYEKWFLPQ---MYEKAPVLIIDANEADIE 190 (193)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHhc--CcHhhhcCCHHHHHHHHHHHHHHHhhc---cCCCCCEEEEECCccccc
Confidence 467999999999999999999988 54322 2333333333333322211 11235788999876 543
No 85
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.54 E-value=9.3e-14 Score=91.22 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHH--HHHHHHHHHhhchhhHHHHhh
Q 040894 95 EPNAVLVFDCSEEEMTRRILSRNQGRVDDKID--TIKKRLNVYSESTLPVINYYS 147 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (169)
.||++|||+++.++.++|+.+| ||+-+... .-...+..++......++.|.
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~R--gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~ 178 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKR--GRPFEIDNFDENKDYLKDLHRRYDDWFENYD 178 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHh--CCCcccccccchHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999 77655211 112334444444445544453
No 86
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.53 E-value=5.6e-13 Score=88.40 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=82.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcC----C-cchHHHHHHHHcCCCCCHHHH--------HHHHHHHHHc
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESG----S-NDGKMIREYKKEGKLVPSEII--------VKLLQKAMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 67 (169)
|+||||||+++.|+..++..++..+..+......+ - ............+... ..+. ...+...+..
T Consensus 10 ~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~yg~~~~~~~~l~~ 88 (186)
T PRK10078 10 PSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFA-LSWHANGLYYGVGIEIDLWLHA 88 (186)
T ss_pred CCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchh-hHHHHhCCccCCcHHHHHHHhC
Confidence 79999999999999987766555544333221110 0 0111111111122111 0000 0124444543
Q ss_pred CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhh
Q 040894 68 SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYS 147 (169)
Q Consensus 68 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (169)
+..+|++|. ......+.. ....+..+|||++|++++.+|+..| +++ ..+.+.+++.... .+.
T Consensus 89 --g~~VI~~G~---~~~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~--------~~~ 150 (186)
T PRK10078 89 --GFDVLVNGS---RAHLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA--------RYQ 150 (186)
T ss_pred --CCEEEEeCh---HHHHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh--------hhc
Confidence 667788775 111222233 3344667899999999999999887 443 2344555553221 122
Q ss_pred hcCcEEEEeCCCChHHHHHhh
Q 040894 148 SKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 148 ~~~~~~~id~~~~~~~v~~~i 168 (169)
..+.+++++++++++++++|
T Consensus 151 -~ad~~vi~~~~s~ee~~~~i 170 (186)
T PRK10078 151 -PQDCHTLNNDGSLRQSVDTL 170 (186)
T ss_pred -cCCEEEEeCCCCHHHHHHHH
Confidence 34667888999999999886
No 87
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.52 E-value=6.2e-13 Score=85.23 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=94.8
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHH-----------HHHHHHHHHcCCC
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEII-----------VKLLQKAMQESQN 70 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~ 70 (169)
..|||||++..|...+.-.... .....+.+-.+..|..+..++.+....++... .+.++..+.. +
T Consensus 14 DrsgKstQ~~~l~~~l~~~~~~--~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~e~l~k--g 89 (208)
T KOG3327|consen 14 DRSGKSTQCGKLVESLIPGLDP--AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIKEKLAK--G 89 (208)
T ss_pred ccCCceeehhHHHHHHHhccCh--HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHHHHHHhc--C
Confidence 3699999999999987332222 23333434456778888888876655555443 2333443433 7
Q ss_pred ceEEEeCCCCC-h----------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhch
Q 040894 71 KNFVIDGFPRN-E----------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSEST 139 (169)
Q Consensus 71 ~~~i~d~~~~~-~----------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 139 (169)
..+|+|+|... + +....... ..+.||+++||+++++.+.+| ..++.+| .+..+..++....|+...
T Consensus 90 ~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggfG~Er-ye~v~fqekv~~~~q~l~ 166 (208)
T KOG3327|consen 90 TTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGFGEER-YETVAFQEKVLVFFQKLL 166 (208)
T ss_pred CeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCcchhH-HHHHHHHHHHHHHHHHHH
Confidence 78999997332 1 11112222 668899999999999995544 3331111 233334444444444332
Q ss_pred hhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 140 LPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 140 ~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+ ....+|.++|++.+.++|++.|
T Consensus 167 r------~e~~~~~~vDAs~sve~V~~~V 189 (208)
T KOG3327|consen 167 R------KEDLNWHVVDASKSVEKVHQQV 189 (208)
T ss_pred h------ccCCCeEEEecCccHHHHHHHH
Confidence 1 1345899999999999999987
No 88
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.51 E-value=2.7e-12 Score=88.91 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=83.2
Q ss_pred CCCCChhHHHHHHHHHhC---C--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLG---F--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+|+.|++.++ + .+++.|. ++...... ...... .........++..+.. +..+|+
T Consensus 7 ~pGSGKST~a~~La~~l~~~~~~v~~i~~D~-lr~~~~~~---~~~~e~-------~~~~~~~~~i~~~l~~--~~~VI~ 73 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEKNIDVIILGTDL-IRESFPVW---KEKYEE-------FIRDSTLYLIKTALKN--KYSVIV 73 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEccHH-HHHHhHHh---hHHhHH-------HHHHHHHHHHHHHHhC--CCeEEE
Confidence 699999999999999873 3 3455443 33332110 000011 1122234456666654 567888
Q ss_pred eCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 76 DGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
|+..........+... ....+..+|||++|.+++.+|...| +... ..+.+...+..|..... .+.-....+
T Consensus 74 D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~~-~~~~i~~l~~r~e~p~~----~~~wd~~~~ 146 (249)
T TIGR03574 74 DDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEKI-PNEVIKDMYEKFDEPGT----KYSWDLPDL 146 (249)
T ss_pred eccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCCC-CHHHHHHHHHhhCCCCC----CCCccCceE
Confidence 9864333332223221 3345678999999999999999888 4332 23344444444432211 111112557
Q ss_pred EEeCCC--ChHHHHHhh
Q 040894 154 KIDAGR--PIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~--~~~~v~~~i 168 (169)
++|++. +++++++.|
T Consensus 147 ~vd~~~~~~~~ei~~~i 163 (249)
T TIGR03574 147 TIDTTKKIDYNEILEEI 163 (249)
T ss_pred EecCCCCCCHHHHHHHH
Confidence 778765 678888876
No 89
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.50 E-value=3.6e-12 Score=83.72 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=62.2
Q ss_pred CCCCChhHHHHHHHHHhCCce--echhHHHHHHHhcCCcchHHHHHHHHcC--CCCCH-------HHHHHHHHHHHHcCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH--LSAGDLLEAEAESGSNDGKMIREYKKEG--KLVPS-------EIIVKLLQKAMQESQ 69 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~--i~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~~ 69 (169)
+|||||||+|+.|++.++..+ ++.|++........... ....-..+ ...+. ......+...+..
T Consensus 10 ~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~-- 84 (175)
T cd00227 10 GSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMARA-- 84 (175)
T ss_pred CCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc---ccccccCccCCcccchHHHHHHHHHHHHHHHHHhC--
Confidence 699999999999999987543 46766665432111000 00000000 00111 1112334444443
Q ss_pred CceEEEeCCCC-ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPR-NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+..+|+|.... .......+.. ....+-..|+|.+|.+++.+|+..|
T Consensus 85 G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R 131 (175)
T cd00227 85 GANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETAR 131 (175)
T ss_pred CCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhc
Confidence 78899986322 2222233433 3334568999999999999999988
No 90
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.50 E-value=1.2e-12 Score=97.85 Aligned_cols=31 Identities=39% Similarity=0.548 Sum_probs=29.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
|+||||||+++.|++++|+.+++.|.+++..
T Consensus 292 ~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 292 PAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 7999999999999999999999999999875
No 91
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=7.8e-13 Score=82.51 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=89.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE-----SQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~i~ 75 (169)
++||||||+++.|++.+++.+++.||+..... .+.+..|....++-.+.++++.-.. ..++++|+
T Consensus 20 vsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 20 VSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred cCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEE
Confidence 58999999999999999999999999875541 1222333333333333333332111 13788888
Q ss_pred eCCCCChHHHHHHHhh--------cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhh
Q 040894 76 DGFPRNEENLSAAENI--------LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYS 147 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (169)
-.........+-+... ....--.+|+|.++.+++.+|+.+|.+ +- -..+.++ .+|.....+. .
T Consensus 90 ACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g-HF-Mp~~lle---SQf~~LE~p~----~ 160 (191)
T KOG3354|consen 90 ACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG-HF-MPADLLE---SQFATLEAPD----A 160 (191)
T ss_pred EhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc-cc-CCHHHHH---HHHHhccCCC----C
Confidence 7653433333333321 011223689999999999999999833 22 2233444 3333333222 1
Q ss_pred hcCcEEEEeCC-CChHHHHHhh
Q 040894 148 SKGKVRKIDAG-RPIEEVFDEI 168 (169)
Q Consensus 148 ~~~~~~~id~~-~~~~~v~~~i 168 (169)
...+++.|+.. .++++++..|
T Consensus 161 ~e~div~isv~~~~~e~iv~tI 182 (191)
T KOG3354|consen 161 DEEDIVTISVKTYSVEEIVDTI 182 (191)
T ss_pred CccceEEEeeccCCHHHHHHHH
Confidence 22368888876 9999988765
No 92
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.8e-12 Score=80.46 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=71.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC-
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP- 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~- 79 (169)
-||+||||++..||+.+++.+|.++++++..- +.....+. .+...+......+.+..++.. .+.|+|=+-
T Consensus 15 TPG~GKstl~~~lae~~~~~~i~isd~vkEn~-----l~~gyDE~-y~c~i~DEdkv~D~Le~~m~~---Gg~IVDyHgC 85 (176)
T KOG3347|consen 15 TPGTGKSTLAERLAEKTGLEYIEISDLVKENN-----LYEGYDEE-YKCHILDEDKVLDELEPLMIE---GGNIVDYHGC 85 (176)
T ss_pred CCCCCchhHHHHHHHHhCCceEehhhHHhhhc-----chhccccc-ccCccccHHHHHHHHHHHHhc---CCcEEeeccc
Confidence 39999999999999999999999999998751 11111110 122344556667888888774 567776321
Q ss_pred CChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCC
Q 040894 80 RNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVD 122 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~ 122 (169)
..+ ..-..|+||.|.+|.+++..|+..| |..+
T Consensus 86 d~F---------perwfdlVvVLr~~~s~LY~RL~sR--gY~e 117 (176)
T KOG3347|consen 86 DFF---------PERWFDLVVVLRTPNSVLYDRLKSR--GYSE 117 (176)
T ss_pred Ccc---------chhheeEEEEEecCchHHHHHHHHc--CCCH
Confidence 111 1124679999999999999999999 6543
No 93
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.48 E-value=2.7e-12 Score=82.23 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=71.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH----hcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA----ESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
+|||||||+|+.|++.++..+++.|.+..... ..+........ ..............+. ..+..+|+|
T Consensus 7 ~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~-~~~~~vVid 78 (150)
T cd02021 7 VSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDR-------WPWLQALTDALLAKLA-SAGEGVVVA 78 (150)
T ss_pred CCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccch-------hhHHHHHHHHHHHHHH-hCCCCEEEE
Confidence 69999999999999999999999888765421 11111000000 0000011111222221 126678887
Q ss_pred CCCCChHHHHHHHhhcC-CCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 77 GFPRNEENLSAAENILK-IEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
...........+.. .. ..+..+|||++|.+++.+|+..| .......+.+.+.+..|..
T Consensus 79 ~~~~~~~~r~~~~~-~~~~~~~~~v~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~ 137 (150)
T cd02021 79 CSALKRIYRDILRG-GAANPRVRFVHLDGPREVLAERLAAR--KGHFMPADLLDSQFETLEP 137 (150)
T ss_pred eccccHHHHHHHHh-cCCCCCEEEEEEECCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC
Confidence 64344444444443 21 24567999999999999999998 2222224556655555553
No 94
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.46 E-value=4.2e-12 Score=83.31 Aligned_cols=148 Identities=19% Similarity=0.188 Sum_probs=84.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH----hcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA----ESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
|+||||||+++.|+..++...++.|++..... ..+-... ......+.....+.+...+.. ...++|+.
T Consensus 11 ~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~g~iv~ 82 (176)
T PRK09825 11 VSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLT-------DEDRLPWLERLNDASYSLYKK-NETGFIVC 82 (176)
T ss_pred CCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCC-------cccchHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 68999999999999999988888776532210 0010000 000011222223333333221 24566664
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKID 156 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 156 (169)
.+ ....... +.. ....+..+|||++|++++.+|+.+|. ......+.+...+..+.... .....|+.+|
T Consensus 83 s~-~~~~~R~-~~r-~~~~~~~~v~l~a~~~~l~~Rl~~R~--~~~~~~~vl~~Q~~~~e~~~-------~~e~~~~~~d 150 (176)
T PRK09825 83 SS-LKKQYRD-ILR-KSSPNVHFLWLDGDYETILARMQRRA--GHFMPPDLLQSQFDALERPC-------ADEHDIARID 150 (176)
T ss_pred Ee-cCHHHHH-HHH-hhCCCEEEEEEeCCHHHHHHHHhccc--CCCCCHHHHHHHHHHcCCCC-------CCcCCeEEEE
Confidence 43 2222222 333 33456789999999999999999992 22234445553333333211 1223699999
Q ss_pred CCCChHHHHHhh
Q 040894 157 AGRPIEEVFDEI 168 (169)
Q Consensus 157 ~~~~~~~v~~~i 168 (169)
++.+++++.+++
T Consensus 151 ~~~~~~~~~~~~ 162 (176)
T PRK09825 151 VNHDIENVTEQC 162 (176)
T ss_pred CCCCHHHHHHHH
Confidence 999998887654
No 95
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.46 E-value=8.9e-13 Score=84.13 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+|+.|++.+++++++.|.+..... ......... ...........+..... ...||+||...
T Consensus 7 ~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~~--~~~i~~~l~~~~~~~~~---~~~~Vidg~~~ 75 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVAA--IPEVRKALDERQRELAK---KPGIVLEGRDI 75 (147)
T ss_pred CCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhcc--cHhHHHHHHHHHHHHhh---CCCEEEEeeee
Confidence 69999999999999999999999884433321 111110000 00011112222333222 45689998532
Q ss_pred ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 81 NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
... .....+++|||++|++.+.+|+..|
T Consensus 76 ~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 76 GTV--------VFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred eeE--------EcCCCCEEEEEECCHHHHHHHHHHH
Confidence 110 1134789999999999999999885
No 96
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.46 E-value=1.6e-12 Score=87.85 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH----hcCCcc--hHHHHHHHHc-C----------------CCC-----
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA----ESGSND--GKMIREYKKE-G----------------KLV----- 52 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~----~~~~~~--~~~~~~~~~~-~----------------~~~----- 52 (169)
|+||||||+++.|++++++.+++.|++++... ..+-.. ...+...+.. + ...
T Consensus 10 ~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ir 89 (217)
T TIGR00017 10 PSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGEDVSEAIR 89 (217)
T ss_pred CCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCcchHHHhc
Confidence 79999999999999999999999999887652 111111 1111111100 0 000
Q ss_pred CHH------------HHHHHHHHHHHcC-CCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC--
Q 040894 53 PSE------------IIVKLLQKAMQES-QNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN-- 117 (169)
Q Consensus 53 ~~~------------~~~~~l~~~~~~~-~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~-- 117 (169)
..+ .....+...+.+. ...+||++|.... .. ..+..++.|||++|+++..+|...|.
T Consensus 90 ~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~--~~------v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~ 161 (217)
T TIGR00017 90 TQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIG--TV------VFPNAEVKIFLDASVEERAKRRYKQLQI 161 (217)
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcc--eE------EeCCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 000 0011222222211 2457999884211 00 22347799999999999988888771
Q ss_pred CCCCCCcHHHHHHHHHHH--hhchhhHHHHhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 118 QGRVDDKIDTIKKRLNVY--SESTLPVINYYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
.|. +-..+.+.+++..- .+..+.....-...+.+++.++..+++++++.|.
T Consensus 162 ~g~-~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieevv~~I~ 214 (217)
T TIGR00017 162 KGN-EVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEVVEKIL 214 (217)
T ss_pred cCC-CCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHHHHHHH
Confidence 111 22334444443222 1222211111112334556666899999998873
No 97
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.44 E-value=1.4e-12 Score=86.06 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=52.1
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhc
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSK 149 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
+..+|+++... ....+.. .. ....+|||++|.+++.+|+..| +++. .+.+.+++..+..... ..
T Consensus 90 g~~vv~~g~~~---~~~~~~~-~~-~~~~~i~l~~~~~~~~~Rl~~R--~~~~--~~~~~~rl~~~~~~~~-------~~ 153 (179)
T TIGR02322 90 GDVVVVNGSRA---VLPEARQ-RY-PNLLVVNITASPDVLAQRLAAR--GRES--REEIEERLARSARFAA-------AP 153 (179)
T ss_pred CCEEEEECCHH---HHHHHHH-HC-CCcEEEEEECCHHHHHHHHHHc--CCCC--HHHHHHHHHHHhhccc-------cc
Confidence 66788887522 1222222 22 2458999999999999999988 5433 2444444432221110 23
Q ss_pred CcEEEEeCCCChHHHHHhh
Q 040894 150 GKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 150 ~~~~~id~~~~~~~v~~~i 168 (169)
..+++++++.++++++++|
T Consensus 154 ~~~~vi~~~~~~ee~~~~i 172 (179)
T TIGR02322 154 ADVTTIDNSGSLEVAGETL 172 (179)
T ss_pred CCEEEEeCCCCHHHHHHHH
Confidence 4677789999999999886
No 98
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.44 E-value=6.2e-12 Score=83.70 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcch-HHHHHHHH----cCCCCCHHHH--------------HHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDG-KMIREYKK----EGKLVPSEII--------------VKLL 61 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~--------------~~~l 61 (169)
+|||||||+|+.|++++++.++..+|++++.+......+ ......+. .+........ ...+
T Consensus 11 ~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L~~va 90 (197)
T PRK12339 11 IPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGINRVI 90 (197)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999988888898888766422211 11111110 1111111111 1223
Q ss_pred HHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEc-CHHHHHHHHhcC
Q 040894 62 QKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDC-SEEEMTRRILSR 116 (169)
Q Consensus 62 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R 116 (169)
...+.+ |..+|+|+............. .-..++++.+ ++++..+|+..|
T Consensus 91 ~~~l~~--G~sVIvEgv~l~p~~~~~~~~----~~v~~i~l~v~d~e~lr~Rl~~R 140 (197)
T PRK12339 91 RRALLN--GEDLVIESLYFHPPMIDENRT----NNIRAFYLYIRDAELHRSRLADR 140 (197)
T ss_pred HHHHHc--CCCEEEEecCcCHHHHHHHHh----cCeEEEEEEeCCHHHHHHHHHHH
Confidence 334443 889999986554444332222 1235677766 688888999998
No 99
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.42 E-value=8.1e-12 Score=85.17 Aligned_cols=161 Identities=19% Similarity=0.277 Sum_probs=88.3
Q ss_pred CCCCChhHHHHHHHHHhCCce---echhHHHHHHHhc----------CCcchHHHHHHHHcCCCC-CH-----------H
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH---LSAGDLLEAEAES----------GSNDGKMIREYKKEGKLV-PS-----------E 55 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~---i~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~-----------~ 55 (169)
+.|||||++|+.||+.+|+.+ +++|+++-..... +..-.-.++.+..+.+-. .. .
T Consensus 79 nI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~r~y~~R~~ 158 (393)
T KOG3877|consen 79 NIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQDRIYNCRFD 158 (393)
T ss_pred CcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHHHHHHhHHH
Confidence 579999999999999998654 4566655433211 001111122322222111 00 0
Q ss_pred HHHHHHHHHHHcCCCceEEEeCCCCC-hHHHHHHHhh--------------------cCCCCCEEEEEEcCHHHHHHHHh
Q 040894 56 IIVKLLQKAMQESQNKNFVIDGFPRN-EENLSAAENI--------------------LKIEPNAVLVFDCSEEEMTRRIL 114 (169)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~i~d~~~~~-~~~~~~~~~~--------------------~~~~~~~~i~l~~~~~~~~~R~~ 114 (169)
...+.+..++.. ++++|+++.|.. +...+.+..+ ....|.+||||++|...+.+++.
T Consensus 159 QY~dAL~HiL~T--GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik 236 (393)
T KOG3877|consen 159 QYLDALAHILNT--GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIK 236 (393)
T ss_pred HHHHHHHHHHhc--CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHH
Confidence 113444444544 899999987653 2222223322 33679999999999999999999
Q ss_pred cCCCCCCCCc----HHHHHHHHHHHhhchhhHHHHhhhcCcEEEEe--CCCChHHHHHhh
Q 040894 115 SRNQGRVDDK----IDTIKKRLNVYSESTLPVINYYSSKGKVRKID--AGRPIEEVFDEI 168 (169)
Q Consensus 115 ~R~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id--~~~~~~~v~~~i 168 (169)
+| |.+.+- ...+...=+.|++.. +..+.....++.-| ..++.+.|++.|
T Consensus 237 ~r--g~~~Eik~~s~aYL~diE~~YK~~f---L~e~s~h~eiL~Ydwt~~gdt~~VVEDI 291 (393)
T KOG3877|consen 237 RR--GNTDEIKTVSEAYLKDIEESYKDSF---LREYSNHSEILAYDWTKPGDTDAVVEDI 291 (393)
T ss_pred hc--CCCcceeehhHHHHHHHHHHHHHHH---HHHHhhhhheeeeecccCCCchhHHHhh
Confidence 99 544332 112222223343332 22344333444433 457777777766
No 100
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.40 E-value=1.3e-11 Score=95.96 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH----HhcCCcc--hHHHHHHHHc-------------CCCCCHHHH----
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE----AESGSND--GKMIREYKKE-------------GKLVPSEII---- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~----~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~---- 57 (169)
|+||||||+++.||+++++.+++.+.+++.. .+.+-.+ ...+.+.+.. +..+...+.
T Consensus 450 ~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v 529 (661)
T PRK11860 450 PTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAIRTEAA 529 (661)
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchhhhCcHHH
Confidence 7999999999999999999999999999886 2222111 1112221111 000000000
Q ss_pred -------------HHHHHHHHHcC-CCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCCCC
Q 040894 58 -------------VKLLQKAMQES-QNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQGRV 121 (169)
Q Consensus 58 -------------~~~l~~~~~~~-~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~ 121 (169)
.+.+.....+. ...++|+||--. ... ..+..++-|||+++++++.+|.... ..+..
T Consensus 530 ~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdi--gtv------v~p~a~~kifl~a~~~~Ra~Rr~~~~~~~~~~ 601 (661)
T PRK11860 530 GMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDM--GTV------IFPDAALKVFLTASAEARAERRYKQLISKGIS 601 (661)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCC--ccE------ECCCCCeEEEEECChhHHHHHHHHHHHhCCCC
Confidence 11111111111 134688888311 111 3456889999999999999998753 12332
Q ss_pred CCcHHHHHHHH--HHHhhchhhHHHHhhhc-CcEEEEeCCCChHHHHHhh
Q 040894 122 DDKIDTIKKRL--NVYSESTLPVINYYSSK-GKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 122 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~v~~~i 168 (169)
...+.+.+.+ ..+.+..+.. ..+... +.+++.++..+++++++.|
T Consensus 602 -~~~~~~~~~~~~Rd~~d~~R~~-~pl~~~~da~~idts~~~~~~v~~~i 649 (661)
T PRK11860 602 -ANIADLLADLEARDARDTQRSV-APLKPAQDALLLDNSDLTIEQAVAQV 649 (661)
T ss_pred -CCHHHHHHHHHHHhHHhhcCCC-CCCccCCCEEEEECCCCCHHHHHHHH
Confidence 2232222222 1112221111 111222 3444445578999999887
No 101
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.40 E-value=2e-12 Score=85.98 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCCChhHHHHHHHHHhCCc---eechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------
Q 040894 1 GPGSGKSTQCSKIAKHLGFR---HLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE---------- 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~---~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 67 (169)
++||||||+|+.|++.++-. +|+.|+++... .. ........-.+.+......+++.+.+..+...
T Consensus 16 ~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~-~~-~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P~yd~ 93 (218)
T COG0572 16 GSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQ-SH-LPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDY 93 (218)
T ss_pred CCCCCHHHHHHHHHHHhCcCcceEeeccccccch-hh-cCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcccccccch
Confidence 68999999999999999844 78888888743 11 00000000001111122223333333333321
Q ss_pred ------------CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC---CCCCCCCcHHHHHHHH
Q 040894 68 ------------SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR---NQGRVDDKIDTIKKRL 132 (169)
Q Consensus 68 ------------~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R---~~~~~~~~~~~~~~~~ 132 (169)
.+...+|++|+-.... +.+.. ..|+.||+++|.+++..|...| ..|+. +...+
T Consensus 94 ~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~----~~d~kIfvdtd~D~RliRri~RD~~~rg~~------~e~vi 161 (218)
T COG0572 94 KTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD----LMDLKIFVDTDADVRLIRRIKRDVQERGRD------LESVI 161 (218)
T ss_pred hcccccCCccccCCCcEEEEeccccccc--HHHHh----hcCEEEEEeCCccHHHHHHHHHHHHHhCCC------HHHHH
Confidence 1355678899633222 22222 5789999999999999998887 23442 22334
Q ss_pred HHHhhchhhHHHHhh
Q 040894 133 NVYSESTLPVINYYS 147 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~ 147 (169)
.+|...++|....|-
T Consensus 162 ~qy~~~vkp~~~~fI 176 (218)
T COG0572 162 EQYVKTVRPMYEQFI 176 (218)
T ss_pred HHHHHhhChhhhhcc
Confidence 566666666666554
No 102
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.40 E-value=3.3e-12 Score=86.26 Aligned_cols=108 Identities=17% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE---------- 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 67 (169)
|+||||||+++.|++.++ +.+++.|+++...... .........+........+...+.+..+...
T Consensus 14 ~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v~~p~~d~ 91 (209)
T PRK05480 14 GSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAIEIPVYDY 91 (209)
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHcCCccccCcccc
Confidence 699999999999999983 4567887776432100 0000000000111111122222222222110
Q ss_pred ------------CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 68 ------------SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 68 ------------~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.+...+|+||...... .. ....+|.+||+++|.+++.+|...|
T Consensus 92 ~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~----~~~~~d~~I~v~~~~~~~~~R~~~R 146 (209)
T PRK05480 92 TEHTRSKETIRVEPKDVIILEGILLLED--ER----LRDLMDIKIFVDTPLDIRLIRRLKR 146 (209)
T ss_pred cccccCCCeEEeCCCCEEEEEeehhcCc--hh----HhhhhceeEEEeCChhHHHHHHHhh
Confidence 1133567787532211 11 1234789999999999999999888
No 103
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.38 E-value=2.2e-11 Score=80.14 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+++.|++++. ..+++.|.+ +....... ....... . .......+...+.. .+..+|+
T Consensus 15 ~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~-r~~~~~~~-~~~~~~~--~------~~~~~~~l~~~l~~-~g~~VI~ 83 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLKYSNVIYLDGDEL-REILGHYG-YDKQSRI--E------MALKRAKLAKFLAD-QGMIVIV 83 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH-HhhcCCCC-CCHHHHH--H------HHHHHHHHHHHHHh-CCCEEEE
Confidence 689999999999999885 556765554 33322110 0000000 0 00112223333332 2667888
Q ss_pred eCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 76 DGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
|+... ......... ....+..+|||++|++++.+|..+
T Consensus 84 ~~~~~-~~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 84 TTISM-FDEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred EeCCc-HHHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchh
Confidence 87532 211222222 223456899999999999999753
No 104
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.38 E-value=4.3e-13 Score=82.87 Aligned_cols=100 Identities=30% Similarity=0.425 Sum_probs=55.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCCceEEEe
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE----SQNKNFVID 76 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~i~d 76 (169)
||||||||+|+.|++++|+.++++|++++....... ..+.........+.+...+.. .....+|+|
T Consensus 7 ~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~ 76 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERLGFPVISMDDLIREPGWIER----------DDDEREYIDADIDLLDDILEQLQNKPDNDNWIID 76 (121)
T ss_dssp STTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHG----------CTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCeEEEecceEEecccccc----------CcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEe
Confidence 799999999999999999999999995422110000 000000011123333333332 236779999
Q ss_pred CCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 77 GFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
|.-. ......+. ..+.+||+.++.+.+.+|+.+|
T Consensus 77 g~~~-~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 77 GSYE-SEMEIRLP-----EFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp CCSC-HCCHSCCH-----HGGCEEEEEEEEHHHHHHHHHH
T ss_pred CCCc-cchhhhhh-----cCCEEEEEECCCHHHHHHHHHH
Confidence 9422 11111111 2457999999888555555444
No 105
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=1.9e-11 Score=80.14 Aligned_cols=148 Identities=19% Similarity=0.192 Sum_probs=75.4
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhH-HHHHHH--hcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGD-LLEAEA--ESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
+|||||||+|+.||+.+. +.+++... +..-.. ++-+-+....++.+ .+....++.+.+. +..+|
T Consensus 9 yPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk---n~~VI 78 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK---NYLVI 78 (261)
T ss_pred CCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc---ceEEE
Confidence 699999999999999883 44444332 111111 01111111111111 1111224444444 45677
Q ss_pred EeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 75 IDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
+|..........++... ....+..+||+.+|.++|.+|...| |.+-. .+-+.+.+..|..-.... ++ ..++
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er--gepip-~Evl~qly~RfEePn~~~--rW--Dspl 151 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER--GEPIP-EEVLRQLYDRFEEPNPDR--RW--DSPL 151 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC--CCCCC-HHHHHHHHHhhcCCCCCc--cc--cCce
Confidence 78743322222223222 4456778999999999999999776 44432 234444445554432211 11 1255
Q ss_pred EEEe----CCCChHHHH
Q 040894 153 RKID----AGRPIEEVF 165 (169)
Q Consensus 153 ~~id----~~~~~~~v~ 165 (169)
++|+ ++..++.++
T Consensus 152 l~id~~d~~t~~IDfie 168 (261)
T COG4088 152 LVIDDSDVSTEVIDFIE 168 (261)
T ss_pred EEEecccccccchhHHH
Confidence 6666 445555444
No 106
>PRK06547 hypothetical protein; Provisional
Probab=99.36 E-value=2.2e-12 Score=84.12 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHH--HHHHHHHHHHHcCCCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSE--IIVKLLQKAMQESQNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~~~~~~~~~~i~d~ 77 (169)
+|||||||+++.|++.++..+++.|+++...-. -......+...+ ..+...... ...........-.++..+|++|
T Consensus 23 ~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~~~vVIvEG 101 (172)
T PRK06547 23 RSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEPGRRLIIEG 101 (172)
T ss_pred CCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCCCCeEEEEe
Confidence 699999999999999999999999998754211 011112233332 222111000 0000000001111255678888
Q ss_pred CCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 78 FPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..........+.. . ....++|||++|.+++.+|+..|
T Consensus 102 ~~al~~~~r~~~d-~-~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 102 VGSLTAANVALAS-L-LGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred hhhccHHHHHHhc-c-CCCEEEEEEECCHHHHHHHHHhc
Confidence 4222222222211 1 11238999999999999999998
No 107
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.36 E-value=1.1e-10 Score=75.92 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCCChhHHHHHHHHHhCCc--eechhHHHHHHHhc----CCcc---------hHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR--HLSAGDLLEAEAES----GSND---------GKMIREYKKEGKLVPSEIIVKLLQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~--~i~~d~~~~~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (169)
||.|||||+|+.|.+.+.-+ ++..|.+....... +..+ +...... ...+...+....
T Consensus 9 ~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~iaa~a 80 (174)
T PF07931_consen 9 PSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRL--------YAAMHAAIAAMA 80 (174)
T ss_dssp -TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHH--------HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHH--------HHHHHHHHHHHH
Confidence 68999999999999999754 67888887743221 0000 0111100 001123333333
Q ss_pred HcCCCceEEEeCCCCChHH-HHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHH
Q 040894 66 QESQNKNFVIDGFPRNEEN-LSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVIN 144 (169)
Q Consensus 66 ~~~~~~~~i~d~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
.. +..+|+|........ .+.+.......+.+.|-+.||.+++.+|-..| +........ .++...-..
T Consensus 81 ~a--G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R--gDR~~G~a~-----~q~~~Vh~~--- 148 (174)
T PF07931_consen 81 RA--GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR--GDRPIGLAA-----WQAEHVHEG--- 148 (174)
T ss_dssp HT--T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH--TSSSTTHHH-----HHTTGGGTT---
T ss_pred hC--CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc--CCcchHHHH-----HHHhhcccC---
Confidence 33 888999976554443 44452324467889999999999999999988 433333221 223221111
Q ss_pred HhhhcCcEEEEeCCCChHHHHHhhC
Q 040894 145 YYSSKGKVRKIDAGRPIEEVFDEIK 169 (169)
Q Consensus 145 ~~~~~~~~~~id~~~~~~~v~~~i~ 169 (169)
..+++.+.++..++++.+++|+
T Consensus 149 ---~~YDleVDTs~~sp~ecA~~I~ 170 (174)
T PF07931_consen 149 ---GRYDLEVDTSATSPEECAREIL 170 (174)
T ss_dssp ------SEEEETTSS-HHHHHHHHH
T ss_pred ---CCCCEEEECCCCCHHHHHHHHH
Confidence 2357666677789999999873
No 108
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=4.8e-10 Score=71.15 Aligned_cols=155 Identities=23% Similarity=0.317 Sum_probs=87.7
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHHHhc-C-CcchHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAES-G-SNDGKMIREYKKEGKLVPSEIIVKLLQKA---MQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~i 74 (169)
.||+||||+++.+.+.+ .+.+++.+++..+.... | .+....++ ..|.+...++.... +... ...+|
T Consensus 12 VpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-------klp~e~Q~~lq~~Aa~rI~~~-~~~ii 83 (189)
T COG2019 12 VPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-------KLPLENQRELQAEAAKRIAEM-ALEII 83 (189)
T ss_pred CCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-------cCCHHHHHHHHHHHHHHHHHh-hhceE
Confidence 38999999999999998 78889999988776433 2 12222222 12333223222222 2221 22277
Q ss_pred EeCC-----CC-ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCCCCcHHHHHHHHHHHhhchhhHHHHhh
Q 040894 75 IDGF-----PR-NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRVDDKIDTIKKRLNVYSESTLPVINYYS 147 (169)
Q Consensus 75 ~d~~-----~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (169)
+|.+ |. .+.-.+.|.- ....||.++.|.++++.+..|..+. ...|+.++.+.+. .++++.+...-.|.
T Consensus 84 vDtH~~IkTP~GylpgLP~~Vl-~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~----eHqe~nR~aA~a~A 158 (189)
T COG2019 84 VDTHATIKTPAGYLPGLPSWVL-EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIR----EHQEMNRAAAMAYA 158 (189)
T ss_pred EeccceecCCCccCCCCcHHHH-HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHH----HHHHHHHHHHHHHH
Confidence 7754 11 1111122222 3467999999999999999887764 3356666665554 33333322221222
Q ss_pred --hcCcEEEEeC-CCChHHHHHhh
Q 040894 148 --SKGKVRKIDA-GRPIEEVFDEI 168 (169)
Q Consensus 148 --~~~~~~~id~-~~~~~~v~~~i 168 (169)
....+.++.+ ++.+++.++.|
T Consensus 159 ~~~gatVkIV~n~~~~~e~Aa~ei 182 (189)
T COG2019 159 ILLGATVKIVENHEGDPEEAAEEI 182 (189)
T ss_pred HHhCCeEEEEeCCCCCHHHHHHHH
Confidence 3345666665 57777777655
No 109
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.33 E-value=1.1e-10 Score=79.53 Aligned_cols=31 Identities=42% Similarity=0.617 Sum_probs=28.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
||||||||+++.|++.+|+.+++.|.+++..
T Consensus 12 ~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 12 PAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 6899999999999999999999999988763
No 110
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.28 E-value=4e-11 Score=80.35 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~ 30 (169)
|+||||||+++.|+..+ +..+++.|+++..
T Consensus 7 ~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 7 GSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 79999999999999987 3668888887643
No 111
>PRK12338 hypothetical protein; Provisional
Probab=99.28 E-value=3e-10 Score=80.28 Aligned_cols=115 Identities=19% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc--CCcc----hHH-HHHH--HHcCC-CCC------------HHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES--GSND----GKM-IREY--KKEGK-LVP------------SEIIV 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~--~~~~----~~~-~~~~--~~~~~-~~~------------~~~~~ 58 (169)
+|||||||+|+.||+++|+.++..+|.++..+.. +.++ ... ...+ +.... ..+ .....
T Consensus 12 ~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~~q~~~V~ 91 (319)
T PRK12338 12 ASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFEEHASFVI 91 (319)
T ss_pred CCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHHHHHHHHH
Confidence 5999999999999999999988777888877553 1111 111 0000 00110 111 11112
Q ss_pred HHHHHHHHc--CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 59 KLLQKAMQE--SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 59 ~~l~~~~~~--~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..+...+.. ..+..+|++|.-........... ....+...++|..+.+..++|...|
T Consensus 92 ~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R 150 (319)
T PRK12338 92 PAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKR 150 (319)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHh
Confidence 333333332 13778999996333322221111 1222445666778999999999998
No 112
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=9.4e-11 Score=92.05 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=29.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
||||||||+++.||+.+|+.+++++.+++..
T Consensus 9 ~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 9 PAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred CCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 7999999999999999999999999988774
No 113
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.27 E-value=9.9e-12 Score=81.89 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCChhHHHHHHHHHh-CCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-GFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-~~~~i~~d~~~~~~ 31 (169)
+|||||||+|+.|++.+ +..+++.|+++...
T Consensus 7 ~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 7 VTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 58999999999999998 68899999988653
No 114
>PTZ00301 uridine kinase; Provisional
Probab=99.25 E-value=4.2e-11 Score=80.48 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...+|+||... +.. ..+.. ..|+.||+++|.++++.|...|
T Consensus 107 ~~ViIvEGi~~-l~~-~~l~~----l~D~~ifvd~~~d~~~~Rr~~R 147 (210)
T PTZ00301 107 KSVLIVEGILL-FTN-AELRN----EMDCLIFVDTPLDICLIRRAKR 147 (210)
T ss_pred CcEEEEechhh-hCC-HHHHH----hCCEEEEEeCChhHHHHHHHhh
Confidence 45667788522 111 12222 4789999999999999999988
No 115
>PHA03132 thymidine kinase; Provisional
Probab=99.22 E-value=1.8e-10 Score=87.02 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=31.0
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCC---cHHHHHHHHHHHhhc
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDD---KIDTIKKRLNVYSES 138 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~---~~~~~~~~~~~~~~~ 138 (169)
..||++|||+++++++++|+.+| ++..+ ..+++.+....|...
T Consensus 400 ~~PDLiIyLdv~pe~alkRIkkR--gR~~E~~IdleYL~rLre~Y~~l 445 (580)
T PHA03132 400 HEGDVIVLLKLNSEENLRRVKKR--GRKEEKGINLTYLKELNWAYHAV 445 (580)
T ss_pred cCCCEEEEEeCCHHHHHHHHHhc--CchhhhcCCHHHHHHHHHHHHHH
Confidence 45999999999999999999998 55444 334555444444443
No 116
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.22 E-value=9.4e-11 Score=79.07 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE---------- 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 67 (169)
|+||||||+++.|+..++ ..+++.|+++...... .........+......+.....+.+..+...
T Consensus 14 ~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~p~yd~ 91 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--EMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDVPVYDY 91 (207)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--CHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEeccccee
Confidence 699999999999998875 4567777765321000 0000000000000001111112222222110
Q ss_pred ------------CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 68 ------------SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 68 ------------~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.+...+|+||.+..... .+. ...|.+||+++|.++++.|+..|
T Consensus 92 ~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R 146 (207)
T TIGR00235 92 VNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIER 146 (207)
T ss_pred ecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHH
Confidence 12356777886443221 122 24789999999999999999877
No 117
>PRK06696 uridine kinase; Validated
Probab=99.21 E-value=1.1e-10 Score=79.52 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCCCChhHHHHHHHHHh---CCce--echhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRH--LSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~--i~~d~~~~~ 30 (169)
+|||||||+|+.|++.+ |..+ +++|+++..
T Consensus 30 ~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 30 ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 68999999999999999 5444 558887754
No 118
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.21 E-value=9e-10 Score=87.26 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=29.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
||||||||+|+.||+++++.+++++.++|..
T Consensus 42 ~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 42 PAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 7999999999999999999999999999886
No 119
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.21 E-value=7.7e-10 Score=72.70 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAESGSNDGKMIR-EYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
+|||||||+++.|+..+. ..+++.|.+.. .+..+-.....-+ .... ....+...+.. .+..++
T Consensus 12 ~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~-~~~~~~~~~~~~r~~~~~---------~~~~~a~~~~~-~g~~vi 80 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT-NLSKGLGFSKEDRDTNIR---------RIGFVANLLTR-HGVIVL 80 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH-HHhcCCCCChhhHHHHHH---------HHHHHHHHHHh-CCCEEE
Confidence 599999999999999883 45677765543 2221111000000 0000 01122222322 256677
Q ss_pred EeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCC---CCCCCCcHHHHHHHHHHHhhchhhHHHHhh-hcC
Q 040894 75 IDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRN---QGRVDDKIDTIKKRLNVYSESTLPVINYYS-SKG 150 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 150 (169)
+++..........+.. .. ..-.+|||++|++++.+|. .|. ..+. +. +..+.....+ .+. ...
T Consensus 81 ~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~-~~~l~~~~~~-~~-------i~~~~~~~~~---~~~p~~a 146 (175)
T PRK00889 81 VSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRD-VKGLYAKARA-GE-------IKHFTGIDDP---YEPPLNP 146 (175)
T ss_pred EecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhC-cccHHHHHHc-CC-------CCCCcccCCC---CCCCCCC
Confidence 7764223333333433 22 3457999999999999995 220 0110 00 0011111111 122 224
Q ss_pred cEEEEeCCCChHHHHHhh
Q 040894 151 KVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 151 ~~~~id~~~~~~~v~~~i 168 (169)
.+.+.+++.++++++++|
T Consensus 147 d~~i~~~~~~~~~~~~~i 164 (175)
T PRK00889 147 EVECRTDLESLEESVDKV 164 (175)
T ss_pred cEEEECCCCCHHHHHHHH
Confidence 667777788999998876
No 120
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.19 E-value=3.2e-10 Score=70.59 Aligned_cols=101 Identities=31% Similarity=0.371 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHh-cCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAE-SGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQ----ESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~i~ 75 (169)
+|||||||+|+.|+++++. .+..... .+......-..................+..... ...+..+|+
T Consensus 6 ~~GsGKtTia~~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 78 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERLGD-------IIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII 78 (129)
T ss_dssp STTSSHHHHHHHHHHHHCH-------HHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHHCc-------HHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence 6999999999999999822 2212111 111100000000011122233332233322222 233677888
Q ss_pred eCCCCChHHHHHHHhhcCCCCCEE-EEEEcCHHHHHHHHhcC
Q 040894 76 DGFPRNEENLSAAENILKIEPNAV-LVFDCSEEEMTRRILSR 116 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~-i~l~~~~~~~~~R~~~R 116 (169)
|+........ ...... |+|++|++++.+|+..|
T Consensus 79 d~~~~~~~~~--------~~~~~~~i~L~~~~e~~~~R~~~R 112 (129)
T PF13238_consen 79 DGILSNLELE--------RLFDIKFIFLDCSPEELRKRLKKR 112 (129)
T ss_dssp EESSEEECET--------TEEEESSEEEE--HHHHHHHHHCT
T ss_pred ecccchhccc--------ccceeeEEEEECCHHHHHHHHHhC
Confidence 8853221110 011223 99999999999999998
No 121
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.18 E-value=6.2e-10 Score=70.27 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=88.3
Q ss_pred CCCCChhHHHHHHHHHhCCc--eechhHHHHHHHhcCCcchHHHH-----HHHHcCCCC--CHH--HH---HHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR--HLSAGDLLEAEAESGSNDGKMIR-----EYKKEGKLV--PSE--II---VKLLQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~--~i~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~--~~---~~~l~~~~~ 66 (169)
|+||||-|+...+...+... +.-+..++.+....+++....+. .....+.+. +.. +. -..+..++.
T Consensus 13 PSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip~eId~wl~ 92 (192)
T COG3709 13 PSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIPAEIDLWLA 92 (192)
T ss_pred CCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccCchhHHHHHh
Confidence 89999999999999988533 33333455554444433211111 111111110 000 00 112334455
Q ss_pred cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHh
Q 040894 67 ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYY 146 (169)
Q Consensus 67 ~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
. +..+|++|+-..+.++..... --.++.|.++++++.+|+..| || ++.+.+.+++..-....
T Consensus 93 ~--G~vvl~NgSRa~Lp~arrry~-----~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~a~~~------- 154 (192)
T COG3709 93 A--GDVVLVNGSRAVLPQARRRYP-----QLLVVCITASPEVLAQRLAER--GR--ESREEILARLARAARYT------- 154 (192)
T ss_pred C--CCEEEEeccHhhhHHHHHhhh-----cceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhhcccc-------
Confidence 4 778888886444444443222 457999999999999999998 77 55666666655333221
Q ss_pred hhcCcEEEEeCCCChHHHHHh
Q 040894 147 SSKGKVRKIDAGRPIEEVFDE 167 (169)
Q Consensus 147 ~~~~~~~~id~~~~~~~v~~~ 167 (169)
....+++.|||++..+...++
T Consensus 155 ~~~~dv~~idNsG~l~~ag~~ 175 (192)
T COG3709 155 AGPGDVTTIDNSGELEDAGER 175 (192)
T ss_pred cCCCCeEEEcCCCcHHHHHHH
Confidence 135689999999999987754
No 122
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.18 E-value=3.4e-10 Score=76.24 Aligned_cols=93 Identities=17% Similarity=0.298 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEc--CHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHh
Q 040894 59 KLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDC--SEEEMTRRILSRNQGRVDDKIDTIKKRLNVYS 136 (169)
Q Consensus 59 ~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~--~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 136 (169)
..+...+.. +..+|++... .....+.. . .|+.++++.+ +.+++.+|+..| +. +..+.+.+++..+.
T Consensus 94 ~~i~~~~~~--g~~vi~~~~~---~g~~~l~~-~--~pd~~~if~~pps~e~l~~Rl~~R--~~--~~~~~~~~Rl~~~~ 161 (206)
T PRK14738 94 APVRQALAS--GRDVIVKVDV---QGAASIKR-L--VPEAVFIFLAPPSMDELTRRLELR--RT--ESPEELERRLATAP 161 (206)
T ss_pred HHHHHHHHc--CCcEEEEcCH---HHHHHHHH-h--CCCeEEEEEeCCCHHHHHHHHHHc--CC--CCHHHHHHHHHHHH
Confidence 456666665 6778887533 23333433 2 3666666665 456889999988 32 23455666665544
Q ss_pred hchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 137 ESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
...... ....++++|++.++++++++|
T Consensus 162 ~e~~~~-----~~~~~~iId~~~~~e~v~~~i 188 (206)
T PRK14738 162 LELEQL-----PEFDYVVVNPEDRLDEAVAQI 188 (206)
T ss_pred HHHhcc-----cCCCEEEECCCCCHHHHHHHH
Confidence 322111 123678999999999999876
No 123
>COG0645 Predicted kinase [General function prediction only]
Probab=99.18 E-value=3.3e-09 Score=67.68 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHH------HHHHHHHHHHHcCCCceEEE
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSE------IIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~i~ 75 (169)
|||||||+|+.|++.+++..|..|.+-+.. ..-+.. .-...+.+.+.. .+.......+.. |..+|+
T Consensus 10 ~GsGKstlA~~l~~~lgA~~lrsD~irk~L-~g~p~~-----~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~--G~~VVl 81 (170)
T COG0645 10 PGSGKSTLARGLAELLGAIRLRSDVIRKRL-FGVPEE-----TRGPAGLYSPAATAAVYDELLGRAELLLSS--GHSVVL 81 (170)
T ss_pred CCccHhHHHHHHHhhcCceEEehHHHHHHh-cCCccc-----ccCCCCCCcHHHHHHHHHHHHHHHHHHHhC--CCcEEE
Confidence 899999999999999999999987666554 221110 000112222211 112222333333 889999
Q ss_pred eCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHH
Q 040894 76 DGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIK 129 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~ 129 (169)
|+......+...+... ....+...|.+.+|.+++..|+..|..+..+.....+.
T Consensus 82 Da~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~ 137 (170)
T COG0645 82 DATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILR 137 (170)
T ss_pred ecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHH
Confidence 9854444333333321 33445678999999999999999983323333343444
No 124
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.18 E-value=7.7e-11 Score=78.05 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=79.2
Q ss_pred CCCCChhHHHHHHHHHhC--CceechhHHHHHHHhcC----Ccc----hHHHHHHHHcCCCCCH--------HHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG--FRHLSAGDLLEAEAESG----SND----GKMIREYKKEGKLVPS--------EIIVKLLQ 62 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~--~~~i~~d~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~--------~~~~~~l~ 62 (169)
||||||+|+++.|.+.+. +... .....+.. .++ ... ...+......+.++.. ......+.
T Consensus 10 psg~GK~tl~~~L~~~~~~~~~~~-~~~TtR~~-r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~ 87 (184)
T smart00072 10 PSGVGKGTLLAELIQEIPDAFERV-VSHTTRPP-RPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKETIR 87 (184)
T ss_pred CCCCCHHHHHHHHHhcCCcceEee-eeecCCCC-CCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHHHHH
Confidence 899999999999998863 2111 00011111 111 111 1233333333332211 12245566
Q ss_pred HHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEE-cCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhh
Q 040894 63 KAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFD-CSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLP 141 (169)
Q Consensus 63 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
..+.. +..+|+|..+..+..... ....| ++||+. .+.+.+.+|+..| +. +..+.+.+++........
T Consensus 88 ~~~~~--~~~~ild~~~~~~~~l~~----~~~~~-~vIfi~~~s~~~l~~rl~~R--~~--~~~~~i~~rl~~a~~~~~- 155 (184)
T smart00072 88 QVAEQ--GKHCLLDIDPQGVKQLRK----AQLYP-IVIFIAPPSSEELERRLRGR--GT--ETAERIQKRLAAAQKEAQ- 155 (184)
T ss_pred HHHHc--CCeEEEEECHHHHHHHHH----hCCCc-EEEEEeCcCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHHHh-
Confidence 66665 788999987665544433 22233 799998 6667799999887 33 345566666654333221
Q ss_pred HHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 142 VINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 142 ~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+ ...+ .+|.++ +.++.++++
T Consensus 156 ---~~-~~fd-~~I~n~-~l~~~~~~l 176 (184)
T smart00072 156 ---EY-HLFD-YVIVND-DLEDAYEEL 176 (184)
T ss_pred ---hh-ccCC-EEEECc-CHHHHHHHH
Confidence 11 1123 344444 677777665
No 125
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.17 E-value=3.2e-10 Score=74.82 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=78.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCc----c----hHHHHHHHHcCCCCC--------HHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSN----D----GKMIREYKKEGKLVP--------SEIIVKLLQKA 64 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 64 (169)
|+||||||+++.|++.++..++......+... .+.. . ...+......+.... -......+...
T Consensus 9 ~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~ 87 (180)
T TIGR03263 9 PSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVEEA 87 (180)
T ss_pred CCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHHHH
Confidence 79999999999999977544333222222211 1110 0 011222222221110 01113456666
Q ss_pred HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHH
Q 040894 65 MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVIN 144 (169)
Q Consensus 65 ~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
+.. +..+|+|.. ......+.. ....+..++++..+.+.+.+|+..| +. +..+.+.+++........
T Consensus 88 ~~~--g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r--~~--~~~~~i~~rl~~~~~~~~---- 153 (180)
T TIGR03263 88 LAA--GKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR--GT--DSEEVIERRLAKAKKEIA---- 153 (180)
T ss_pred HHC--CCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc--CC--CCHHHHHHHHHHHHHHHh----
Confidence 665 777888853 333334444 3334555666677889999999987 43 344456666655442211
Q ss_pred HhhhcCcEEEEeCCCChHHHHHhh
Q 040894 145 YYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 145 ~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+....++++ .++ +.+++++++
T Consensus 154 -~~~~~d~~i-~n~-~~~~~~~~l 174 (180)
T TIGR03263 154 -HADEFDYVI-VND-DLEKAVEEL 174 (180)
T ss_pred -ccccCcEEE-ECC-CHHHHHHHH
Confidence 122234444 444 678888776
No 126
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.16 E-value=1.4e-10 Score=78.79 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHHHhC-------CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-------FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-------~~~i~~d~~~~ 29 (169)
|+||||||+|+.|+..+. ..++++|+++.
T Consensus 7 ~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 7 SVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 799999999999999873 34677787764
No 127
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.15 E-value=8e-10 Score=73.15 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=78.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcch--------HHHHHHHHcCCCCC--------HHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDG--------KMIREYKKEGKLVP--------SEIIVKLLQKA 64 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--------~~~~~~~l~~~ 64 (169)
|||||||||++.|.+++.-.+.......+.. .++...| ..+......+.++. -....+.+...
T Consensus 12 psG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~~ 90 (186)
T PRK14737 12 VAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDA 90 (186)
T ss_pred CCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHHH
Confidence 8999999999999887642223322222221 2221111 11222222222110 11124556666
Q ss_pred HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcC-HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHH
Q 040894 65 MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCS-EEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVI 143 (169)
Q Consensus 65 ~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (169)
+.. +..+|+|-.+. -+..+.. ..+...++||+.+| .+++.+|+..| +. ...+.+.+++.......
T Consensus 91 ~~~--g~~~i~d~~~~---g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R--~~--~s~e~i~~Rl~~~~~e~---- 156 (186)
T PRK14737 91 FKE--GRSAIMDIDVQ---GAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR--GT--DSEESIEKRIENGIIEL---- 156 (186)
T ss_pred HHc--CCeEEEEcCHH---HHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHHH----
Confidence 665 78888885433 3333443 32222368999884 79999999887 33 24455666665432111
Q ss_pred HHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 144 NYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 144 ~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
.+....+ ++|+|+ +.+++.+++
T Consensus 157 -~~~~~~D-~vI~N~-dle~a~~ql 178 (186)
T PRK14737 157 -DEANEFD-YKIIND-DLEDAIADL 178 (186)
T ss_pred -hhhccCC-EEEECc-CHHHHHHHH
Confidence 1222234 455555 788888776
No 128
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.15 E-value=1.4e-09 Score=72.85 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=50.2
Q ss_pred CCCCChhHHHHHHHHHh-----CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHH---HHHHHcCCCce
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLL---QKAMQESQNKN 72 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~ 72 (169)
+|||||||+++.|+..+ +..+++.|.+...... .... . .-........+ ...+.. .+..
T Consensus 32 ~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~-~~~~----------~-~~~~~~~~~~l~~~a~~~~~-~G~~ 98 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS-DLGF----------S-DADRKENIRRVGEVAKLMVD-AGLV 98 (198)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh-cCCc----------C-cccHHHHHHHHHHHHHHHhh-CCCE
Confidence 58999999999999976 2456666555433211 1000 0 00001111111 222222 1444
Q ss_pred EEEeCCCC-ChHHHHHHHhhcCCCCCE-EEEEEcCHHHHHHH
Q 040894 73 FVIDGFPR-NEENLSAAENILKIEPNA-VLVFDCSEEEMTRR 112 (169)
Q Consensus 73 ~i~d~~~~-~~~~~~~~~~~~~~~~~~-~i~l~~~~~~~~~R 112 (169)
+| ..+.. .......+.. ......+ +|||++|++++.+|
T Consensus 99 VI-~~~~~~~~~~R~~~r~-~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 99 VL-TAFISPHRAERQMVRE-RLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred EE-EEeCCCCHHHHHHHHH-HcccCCEEEEEEcCCHHHHHhc
Confidence 44 44433 3344444444 3323334 79999999999999
No 129
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.14 E-value=3e-11 Score=80.63 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=55.5
Q ss_pred CCCCChhHHHHHHHHHhCC---------ceechhHHHHHHHhcCCcchHHHHHHH------HcCCCCCHHHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGF---------RHLSAGDLLEAEAESGSNDGKMIREYK------KEGKLVPSEIIVKLLQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~---------~~i~~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~ 65 (169)
||||||||+|+.|+..++. .+++.|+++...... ...... .......-+.+.+.+..+.
T Consensus 7 ~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLR------DRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp STTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHH------HHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchh------hHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 7999999999999999972 245566555332100 000000 0001112223334444332
Q ss_pred Hc----------------------CCCceEEEeCCCCC-hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 66 QE----------------------SQNKNFVIDGFPRN-EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 66 ~~----------------------~~~~~~i~d~~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.. .+...+|++|.... ... +. ...|+.|||+++.++++.|...|
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~----~l~D~~ifld~~~~~~l~Rri~R 147 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LR----DLFDLKIFLDADEDLRLERRIQR 147 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HG----GG-SEEEEEEE-HHHHHHHHHHH
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ec----ccceeEEEecccHHHHHHHHhhh
Confidence 21 13456777884221 111 22 24789999999999999988877
No 130
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.14 E-value=1.1e-09 Score=83.65 Aligned_cols=102 Identities=14% Similarity=-0.028 Sum_probs=54.9
Q ss_pred CCCCChhHHHHHHHHHhCC------ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHLGF------RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~------~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
+|||||||+|+.|++.++. .+++.|.+ +..+..+..+...-+.... ..........+.. +.++|
T Consensus 400 l~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l~ge~~f~~~er~~~~-------~~l~~~a~~v~~~--Gg~vI 469 (568)
T PRK05537 400 LSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHLSSELGFSKEDRDLNI-------LRIGFVASEITKN--GGIAI 469 (568)
T ss_pred CCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhccCCCCCCHHHHHHHH-------HHHHHHHHHHHhC--CCEEE
Confidence 5899999999999999986 77887655 4433221111110010000 0001111222332 77788
Q ss_pred EeC-CCCCh--HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh
Q 040894 75 IDG-FPRNE--ENLSAAENILKIEPNAVLVFDCSEEEMTRRIL 114 (169)
Q Consensus 75 ~d~-~~~~~--~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~ 114 (169)
++. +|... .....+.. ... .-++|||++|.+++.+|..
T Consensus 470 ~~~~~p~~~~R~~nr~llk-~~g-~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 470 CAPIAPYRATRREVREMIE-AYG-GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred EEeCCchHHHHHHHHHHHh-hcC-CEEEEEEcCCHHHHHHhcc
Confidence 875 33322 22222222 111 2268999999999999964
No 131
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.13 E-value=7.5e-09 Score=72.77 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQE--SQNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~d~~ 78 (169)
++||||||+++.|.. .|+.+++. + +.....+++...... ...-.+++|-.
T Consensus 14 ~~GsGKtt~~~~l~~-~g~~~~d~--~-------------------------~~~L~~~l~~~~~~~~~~~~~av~iD~r 65 (288)
T PRK05416 14 LSGAGKSVALRALED-LGYYCVDN--L-------------------------PPSLLPKLVELLAQSGGIRKVAVVIDVR 65 (288)
T ss_pred CCCCcHHHHHHHHHH-cCCeEECC--c-------------------------CHHHHHHHHHHHHhcCCCCCeEEEEccC
Confidence 689999999999964 58776652 1 111111111111111 11335566653
Q ss_pred CCC-----hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 79 PRN-----EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 79 ~~~-----~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
... ......+.. . .....+|||+++++++.+|+..+...||......+.+.+...+....+ +...++++
T Consensus 66 ~~~~~~~~~~~~~~L~~-~-g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~p----l~~~ADiv 139 (288)
T PRK05416 66 SRPFFDDLPEALDELRE-R-GIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAP----LRERADLV 139 (288)
T ss_pred chhhHHHHHHHHHHHHH-c-CCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhh----HHHhCCEE
Confidence 221 122223333 2 334478999999999999997431233321111111112222222122 22234555
Q ss_pred EEeCCCChHHHHHhh
Q 040894 154 KIDAGRPIEEVFDEI 168 (169)
Q Consensus 154 ~id~~~~~~~v~~~i 168 (169)
+.+++.+++++.++|
T Consensus 140 IDTs~ls~~el~e~I 154 (288)
T PRK05416 140 IDTSELSVHQLRERI 154 (288)
T ss_pred EECCCCCHHHHHHHH
Confidence 555678999999876
No 132
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.11 E-value=6.2e-09 Score=68.95 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEAEAESGSNDGKM-IREYKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
+|||||||+++.|+..+ + ..+++.|.+- ..+..+...... ....+ ..........+. .+..+|
T Consensus 26 ~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r-~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~G~~VI 94 (184)
T TIGR00455 26 LSGSGKSTIANALEKKLESKGYRVYVLDGDNVR-HGLNKDLGFSEEDRKENI--------RRIGEVAKLFVR--NGIIVI 94 (184)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH-hhhccccCCCHHHHHHHH--------HHHHHHHHHHHc--CCCEEE
Confidence 58999999999999887 2 3456655443 322211111000 00000 000111222222 277888
Q ss_pred EeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHH
Q 040894 75 IDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRR 112 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R 112 (169)
+|...........+.......+-.+|||++|.+++.+|
T Consensus 95 ~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 95 TSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred EecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 88743334444444431112245789999999999999
No 133
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.11 E-value=3.7e-09 Score=71.19 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=76.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCC----cc----hHHHHHHHHcCCCC-----CHH---HHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGS----ND----GKMIREYKKEGKLV-----PSE---IIVKLLQKA 64 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~----~~----~~~~~~~~~~~~~~-----~~~---~~~~~l~~~ 64 (169)
|+||||||+++.|+..++..++......+.+ ..+. .. ...+......+... ... .....+...
T Consensus 13 ~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p-~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~ 91 (205)
T PRK00300 13 PSGAGKSTLVKALLERDPNLQLSVSATTRAP-RPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEEA 91 (205)
T ss_pred CCCCCHHHHHHHHHhhCccceeccCccccCC-CCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCcHHHHHHH
Confidence 7999999999999998763222221111111 1111 00 11122211111111 000 013345555
Q ss_pred HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHH
Q 040894 65 MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVIN 144 (169)
Q Consensus 65 ~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
+.. +..+|+|..+ .....+.. ....+..++++.++.+++.+|+..| +. +..+.+.+++..+......
T Consensus 92 l~~--g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R--~~--~~~~~i~~rl~~~~~~~~~--- 158 (205)
T PRK00300 92 LAA--GKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR--GT--DSEEVIARRLAKAREEIAH--- 158 (205)
T ss_pred HHc--CCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHHHHh---
Confidence 554 6777777532 22333333 3333333555567789999999988 43 4456677777666543322
Q ss_pred HhhhcCcEEEEeCCCChHHHHHhh
Q 040894 145 YYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 145 ~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
+ ...+.+++ + .+++++.++|
T Consensus 159 -~-~~~d~vi~-n-~~~e~~~~~l 178 (205)
T PRK00300 159 -A-SEYDYVIV-N-DDLDTALEEL 178 (205)
T ss_pred -H-HhCCEEEE-C-CCHHHHHHHH
Confidence 2 22344554 3 3789988876
No 134
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.10 E-value=4.5e-09 Score=79.34 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFPR 80 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~~ 80 (169)
+|||||||+|+.++...++.+++.|.+-.. ......+...+.. +..+|+|....
T Consensus 377 ~pGSGKST~A~~l~~~~g~~~vn~D~lg~~------------------------~~~~~~a~~~L~~--G~sVVIDaTn~ 430 (526)
T TIGR01663 377 FPGAGKSHFCKKFFQPAGYKHVNADTLGST------------------------QNCLTACERALDQ--GKRCAIDNTNP 430 (526)
T ss_pred CCCCCHHHHHHHHHHHcCCeEECcHHHHHH------------------------HHHHHHHHHHHhC--CCcEEEECCCC
Confidence 599999999999999999999998875210 1123445566665 88899998766
Q ss_pred ChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 81 NEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.......+... ...-+-..+++++|.+++++|+..|
T Consensus 431 ~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 431 DAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 65555544443 3334667999999999999999988
No 135
>PLN02348 phosphoribulokinase
Probab=99.08 E-value=9.6e-10 Score=79.49 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=27.3
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...+|++|....... . .....|+.||++++.++...|...|
T Consensus 163 ~~VVIVEGlh~L~~e--~----lr~l~D~~IyVd~~~dvrl~RRI~R 203 (395)
T PLN02348 163 PKILVIEGLHPMYDE--R----VRDLLDFSIYLDISDDVKFAWKIQR 203 (395)
T ss_pred CcEEEEechhhccCc--c----ccccCcEEEEEECCHHHHHHHHHHh
Confidence 456777884111111 1 2235789999999999998877777
No 136
>PRK07429 phosphoribulokinase; Provisional
Probab=99.05 E-value=3.4e-09 Score=75.82 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~ 28 (169)
++||||||+++.|+..++ ..++..|++.
T Consensus 16 ~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 16 DSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 689999999999999887 4577888764
No 137
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=99.04 E-value=1.3e-08 Score=66.29 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=43.1
Q ss_pred cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCc---HHHHHHHHHHHhhchhhHHHHhh--hcCcEEEEeCCCChHH
Q 040894 92 LKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDK---IDTIKKRLNVYSESTLPVINYYS--SKGKVRKIDAGRPIEE 163 (169)
Q Consensus 92 ~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~ 163 (169)
....+|.+|||.++|++|.+|+..| +|.++. .+++++....+..+.. ...|. ...+++++|++...|-
T Consensus 150 ~~v~~dgiIYLrasPetc~~Ri~~R--~R~EE~gipL~YLe~LH~~HE~WLi--~~~f~~lq~vpvLVLDad~n~df 222 (244)
T KOG4235|consen 150 MDVSLDGIIYLRASPETCYKRIYLR--AREEEKGIPLKYLEALHELHESWLI--KLHFPNLQAVPVLVLDADHNMDF 222 (244)
T ss_pred cccccceEEEeecChHHHHHHHHHH--hhhhhcCCcHHHHHHHHHHHHHHHH--HHhhhHhhcCCeEEEecccchhH
Confidence 4478999999999999999999988 443332 3333332233222222 12333 4568899998766553
No 138
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.03 E-value=1.6e-08 Score=64.68 Aligned_cols=102 Identities=18% Similarity=0.098 Sum_probs=55.3
Q ss_pred CCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCCce
Q 040894 1 GPGSGKSTQCSKIAKHL---GF--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEI---IVKLLQKAMQESQNKN 72 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 72 (169)
+|||||||+|+.|+..+ +. .+++.|.+ +..+......... ...+. .......+.. .+..
T Consensus 7 ~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~-r~~l~~~~~~~~~----------~~~~~~~~~~~~a~~l~~--~G~~ 73 (149)
T cd02027 7 LSGSGKSTIARALEEKLFQRGRPVYVLDGDNV-RHGLNKDLGFSRE----------DREENIRRIAEVAKLLAD--AGLI 73 (149)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH-HHhhhhccCCCcc----------hHHHHHHHHHHHHHHHHh--CCCE
Confidence 58999999999999998 53 34554443 3322211100000 00010 0111122222 2677
Q ss_pred EEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 73 FVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 73 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
+|+|...........+.......+..+|||++|.+++.+|..+
T Consensus 74 VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 74 VIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred EEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 8888643344444434431113456789999999999999644
No 139
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.00 E-value=3.1e-09 Score=67.79 Aligned_cols=101 Identities=21% Similarity=0.187 Sum_probs=53.7
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchHHHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCceEE
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEAEAESGSNDGKMIRE-YKKEGKLVPSEIIVKLLQKAMQESQNKNFV 74 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 74 (169)
.|||||||+|+.|.+++ | ..+++.| .++..+..+..+...-+. .+. ....+...+... +..+|
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD-~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll~~~-G~ivI 78 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARGIKVYLLDGD-NLRHGLNADLGFSKEDREENIR---------RIAEVAKLLADQ-GIIVI 78 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEEHH-HHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHHHHT-TSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEecCc-chhhccCCCCCCCHHHHHHHHH---------HHHHHHHHHHhC-CCeEE
Confidence 48999999999999988 2 4467754 444433332211111110 000 123334444432 77777
Q ss_pred EeCCCCChHHHHHHHhhcCC-CCCEEEEEEcCHHHHHHHH
Q 040894 75 IDGFPRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRI 113 (169)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~ 113 (169)
+............... ... ..-+.||+++|.++|.+|=
T Consensus 79 va~isp~~~~R~~~R~-~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 79 VAFISPYREDREWARE-LIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp EE----SHHHHHHHHH-HHHTTEEEEEEEES-HHHHHHHT
T ss_pred EeeccCchHHHHHHHH-hCCcCceEEEEeCCCHHHHHHhC
Confidence 7754333333333333 111 1468999999999999994
No 140
>PRK07667 uridine kinase; Provisional
Probab=98.99 E-value=3.2e-09 Score=70.80 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=58.2
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHHHHHhc---CCc-ch---------HHHH-HH---HHcCCCCCHHHH-
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLEAEAES---GSN-DG---------KMIR-EY---KKEGKLVPSEII- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~~~~~~---~~~-~~---------~~~~-~~---~~~~~~~~~~~~- 57 (169)
+|||||||+|+.|++.++ ..+++.|+++...... +.. .. ..+. .. +..+..+.....
T Consensus 25 ~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d 104 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYH 104 (193)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeec
Confidence 699999999999999873 4588999877654321 111 00 0000 01 011100000000
Q ss_pred ---HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 58 ---VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 58 ---~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...........+...+|+||... . . ..+. ...|.+||+++|++++++|+..|
T Consensus 105 ~~~~~~~~~~~~~~~~~vvIvEG~~l-~-~-~~~~----~~~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 105 DETDTCEMKKVQIPIVGVIVIEGVFL-Q-R-KEWR----DFFHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred cccccccccceecCCCCEEEEEehhh-h-h-hhHH----hhceEEEEEECCHHHHHHHHhcc
Confidence 00000000111245677788422 1 1 1122 24799999999999999999987
No 141
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.97 E-value=8.8e-10 Score=72.59 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCCCChhHHHHHHHHHh-----CCceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFRHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~~i~~d~~~~~ 30 (169)
+|||||||+|+.|++.+ +..+++.|++++.
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 68999999999999987 3568999999974
No 142
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.96 E-value=1.9e-08 Score=72.08 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCCChhHHHHHHHHHhC------CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG------FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~------~~~i~~d~~~~ 29 (169)
+|||||||+++.|++++. ..+++.|+++.
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 699999999999998875 34899999884
No 143
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.95 E-value=1.5e-08 Score=65.77 Aligned_cols=127 Identities=19% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcch--------HHHHHHHHcCCCCCH--------HHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDG--------KMIREYKKEGKLVPS--------EIIVKLLQKA 64 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--------~~~~~~l~~~ 64 (169)
|+|+||||+.+.|-+..++ .+++....|.+ .+|...| .........+.++.. ......++..
T Consensus 12 PSG~GKsTl~k~L~~~~~l-~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~~ 89 (191)
T COG0194 12 PSGVGKSTLVKALLEDDKL-RFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREPVEQA 89 (191)
T ss_pred CCCCCHHHHHHHHHhhcCe-EEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHHH
Confidence 8999999999999888754 34443344433 2222111 222222222221100 1114455666
Q ss_pred HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEc-CHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchh
Q 040894 65 MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDC-SEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTL 140 (169)
Q Consensus 65 ~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
+.. +..+|+|- ...-+..+.. ..+ ....||+.+ +.+.+.+|+.+| ..++.+.+.+|+........
T Consensus 90 ~~~--G~~vildI---d~qGa~qvk~-~~p-~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~a~~Ei~ 155 (191)
T COG0194 90 LAE--GKDVILDI---DVQGALQVKK-KMP-NAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLENAKKEIS 155 (191)
T ss_pred Hhc--CCeEEEEE---ehHHHHHHHH-hCC-CeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHHHHHHHH
Confidence 665 77777763 2222333333 333 445666666 557777788766 34677788888776665543
No 144
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.95 E-value=1.8e-08 Score=70.34 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCCCChhHHHHHHHHHhC---C--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHLG---F--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
.|||||||+|+.|++.+. . .+++.+++. . .... .... ..+...+......+++.+.. ...+|+
T Consensus 9 ~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~-~~~~-y~~~------~~Ek~~R~~l~s~v~r~ls~--~~iVI~ 76 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--I-DRND-YADS------KKEKEARGSLKSAVERALSK--DTIVIL 76 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--G------GGHHHHHHHHHHHHHHHHTT---SEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--c-chhh-hhch------hhhHHHHHHHHHHHHHhhcc--CeEEEE
Confidence 399999999999999762 3 346644443 1 1111 0000 00001112234555556654 577888
Q ss_pred eCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 76 DGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSRNQGRVD-DKIDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
|+-....-..-.+... .....-.+||+++|.+.+.+|-..| +.+. -..+.+.+....|..-... ..+. .+.
T Consensus 77 Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R--~~~~~~~~e~i~~m~~RfE~P~~~--nrWD--~pl 150 (270)
T PF08433_consen 77 DDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR--PEPERYPEETIDDMIQRFEEPDPK--NRWD--SPL 150 (270)
T ss_dssp -S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT--T-S--S-HHHHHHHHHH---TTSS---GGG--S-S
T ss_pred eCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc--CCCCCCCHHHHHHHHHHhcCCCCC--CCcc--CCe
Confidence 8843333322223322 4455668999999999999999988 3221 2233444444555443221 1121 234
Q ss_pred EEEeC---CCChHHHHHhh
Q 040894 153 RKIDA---GRPIEEVFDEI 168 (169)
Q Consensus 153 ~~id~---~~~~~~v~~~i 168 (169)
+++++ ..+.+++++.|
T Consensus 151 f~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 151 FTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp EEEE-TTS---HHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHH
Confidence 55552 34456666543
No 145
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.94 E-value=6.1e-08 Score=62.36 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCCChhHHHHHHHHHh---CC--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL---GF--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
.|||||||+|..|.+.+ |+ .++| +|-++.-+..+-.+...-+.. +-.....+..++... +..+|+
T Consensus 31 LSGsGKSTiA~ale~~L~~~G~~~y~LD-GDnvR~gL~~dLgFs~edR~e--------niRRvaevAkll~da-G~iviv 100 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVRHGLNRDLGFSREDRIE--------NIRRVAEVAKLLADA-GLIVIV 100 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEec-ChhHhhcccCCCCCChHHHHH--------HHHHHHHHHHHHHHC-CeEEEE
Confidence 48999999999999988 33 4566 466666655442221111100 000133444445442 333333
Q ss_pred eCCCCC-hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHH
Q 040894 76 DGFPRN-EENLSAAENILKIEPNAVLVFDCSEEEMTRRI 113 (169)
Q Consensus 76 d~~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~ 113 (169)
.+... .+..+..........-+-||+++|.++|.+|=
T Consensus 101 -a~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 101 -AFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred -EeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 33222 22222222212223568999999999999884
No 146
>PRK05439 pantothenate kinase; Provisional
Probab=98.93 E-value=2.7e-09 Score=75.52 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCChhHHHHHHHHHhC-------CceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-------FRHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-------~~~i~~d~~~~~ 30 (169)
+|||||||+|+.|++.++ ..++.+|+++..
T Consensus 94 ~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 94 SVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 699999999999998663 357888888754
No 147
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.93 E-value=1.4e-08 Score=71.14 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCCCChhHHHHHHHHHhC---CceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG---FRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~---~~~i~~d~~~ 28 (169)
++||||||+++.|+..++ ..++..|++.
T Consensus 7 ~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 7 DSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 689999999999998774 4578877765
No 148
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.91 E-value=1e-08 Score=70.24 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=29.6
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...+|+||....... ..+.. ....+|.+||+++|.+++.+|+..|
T Consensus 137 ~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 137 ARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred CCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHH
Confidence 345667885332211 11111 2235789999999999999999988
No 149
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.91 E-value=3e-08 Score=77.32 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=55.4
Q ss_pred CCCCChhHHHHHHHHHh-----CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
+|||||||+|+.|++++ ++.+++.|++- ..+..+.......+.. .-............ .+..+|+
T Consensus 468 ~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r-~~l~~~~~~~~~~r~~-------~~~~l~~~a~~~~~--~G~~Viv 537 (632)
T PRK05506 468 LSGSGKSTIANLVERRLHALGRHTYLLDGDNVR-HGLNRDLGFSDADRVE-------NIRRVAEVARLMAD--AGLIVLV 537 (632)
T ss_pred CCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh-hccCCCCCCCHHHHHH-------HHHHHHHHHHHHHh--CCCEEEE
Confidence 58999999999999997 34678876654 3322211111110000 00000111111222 2677788
Q ss_pred eCCCCChHHHHHHHhhcCC-CCCEEEEEEcCHHHHHHHH
Q 040894 76 DGFPRNEENLSAAENILKI-EPNAVLVFDCSEEEMTRRI 113 (169)
Q Consensus 76 d~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~R~ 113 (169)
|...........+.. ... .+-.+|||++|.+++.+|.
T Consensus 538 da~~~~~~~R~~~r~-l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 538 SFISPFREERELARA-LHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred ECCCCCHHHHHHHHH-hcccCCeEEEEECCCHHHHHhhC
Confidence 764333334343443 222 2448999999999999994
No 150
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.89 E-value=1.9e-07 Score=64.89 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=72.2
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CCceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQES---QNKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~i~d~ 77 (169)
.+||||||.++.| +.+|+.++|- .|..+...+++...... ..-.+++|-
T Consensus 9 lSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~ 60 (284)
T PF03668_consen 9 LSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKVAIVIDI 60 (284)
T ss_pred CCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceEEEEEeC
Confidence 4899999999999 6689988772 12222222222222111 133455664
Q ss_pred CCC-ChH----HHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcE
Q 040894 78 FPR-NEE----NLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKV 152 (169)
Q Consensus 78 ~~~-~~~----~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (169)
-.. ... ....+.. ....-.++||+++.+++.+|...-.+.+|-.....+...+..-++. +...+..+++
T Consensus 61 R~~~~~~~~~~~~~~l~~--~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~----L~~lr~~Ad~ 134 (284)
T PF03668_consen 61 RSREFFEDLFEALDELRK--KGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKEREL----LEPLRERADL 134 (284)
T ss_pred CChHHHHHHHHHHHHHHh--cCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHH----HHHHHHhCCE
Confidence 211 111 1122222 2345579999999999999997421122221111111112233322 2334445677
Q ss_pred EEEeCCCChHHHHHhh
Q 040894 153 RKIDAGRPIEEVFDEI 168 (169)
Q Consensus 153 ~~id~~~~~~~v~~~i 168 (169)
++.+++.++.++.+.|
T Consensus 135 vIDTs~l~~~~Lr~~i 150 (284)
T PF03668_consen 135 VIDTSNLSVHQLRERI 150 (284)
T ss_pred EEECCCCCHHHHHHHH
Confidence 7888899999887765
No 151
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.88 E-value=1.3e-07 Score=66.56 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred CCCCChhHHHHHHHHHhCCc-eechhHHHHHHHhc------CCcchHHHHHHHH--cCCCCCHH-HH-------------
Q 040894 1 GPGSGKSTQCSKIAKHLGFR-HLSAGDLLEAEAES------GSNDGKMIREYKK--EGKLVPSE-II------------- 57 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~-~i~~d~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~-~~------------- 57 (169)
++||||||+|..||+++|+. +++. |.+++.+.. .+.+.......+. .....+.+ ..
T Consensus 100 ~sgsGKStlA~~La~~l~~~~vi~~-D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~~v~~g 178 (301)
T PRK04220 100 ASGVGTSTIAFELASRLGIRSVIGT-DSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVG 178 (301)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEec-hHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHHHHHHH
Confidence 68999999999999999987 5664 445433321 0111111111110 00111111 11
Q ss_pred -HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEE-cCHHHHHHHHhcC
Q 040894 58 -VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFD-CSEEEMTRRILSR 116 (169)
Q Consensus 58 -~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~R~~~R 116 (169)
...+...+.+ +...|++|............. .. +-.+.++|. .+++..++|...|
T Consensus 179 i~~~I~~~~~~--g~s~IiEGvhl~P~~i~~~~~-~~-~~~i~~~l~i~~ee~h~~RF~~R 235 (301)
T PRK04220 179 VEAVIERALKE--GISVIIEGVHIVPGFIKEKYL-EN-PNVFMFVLTLSDEEAHKARFYAR 235 (301)
T ss_pred HHHHHHHHHHh--CCcEEEecCCCCHHHHHHhhh-cC-CCEEEEEEEECCHHHHHHHHHHH
Confidence 2223333443 789999997555444333222 11 223455555 4669999999888
No 152
>COG4639 Predicted kinase [General function prediction only]
Probab=98.87 E-value=5.3e-08 Score=61.29 Aligned_cols=105 Identities=24% Similarity=0.154 Sum_probs=63.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYK-KEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
+|||||||.|+..- .+..+++.|++-....... .+.. .......-......++..+.. |...|+|...
T Consensus 10 ~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~~-------~~e~sqk~~~~~~~~l~~~l~qrl~~--Gk~tiidAtn 78 (168)
T COG4639 10 ASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVSA-------SKENSQKNDELVWDILYKQLEQRLRR--GKFTIIDATN 78 (168)
T ss_pred CCCCchhHHHHHhC--CCcceecHHHHHHHhhhch-------hhhhccccHHHHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 68999999999752 3677899888765431110 0000 000001112223444444554 8889999876
Q ss_pred CChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 80 RNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.-.+....+... ...-....|++++|.+.|.+|...|
T Consensus 79 ~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 79 LRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 555554444432 3334557899999999999998755
No 153
>PRK15453 phosphoribulokinase; Provisional
Probab=98.86 E-value=8.7e-09 Score=71.54 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~ 29 (169)
+|||||||+++.|++.++ ..+++.|++.+
T Consensus 13 ~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 13 SSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 589999999999998774 45788888775
No 154
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.86 E-value=3e-07 Score=68.14 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHhCCc-eechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFR-HLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~-~i~~d~ 26 (169)
+|||||||++..||.++++. +++.|.
T Consensus 263 ~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 263 VSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 58999999999999999997 556544
No 155
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.86 E-value=1.5e-08 Score=71.24 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.3
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcC
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
...|+.||+++|.+++.+|+.+|
T Consensus 195 d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 195 DFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred HhCCEEEEEECCHHHHHHHHHHH
Confidence 46899999999999999888777
No 156
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.85 E-value=1.1e-08 Score=66.96 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHh-CCceechhHHHHHHHhc--CCc---------------chHHHHHHHHcCCCCCH--HHHH---
Q 040894 2 PGSGKSTQCSKIAKHL-GFRHLSAGDLLEAEAES--GSN---------------DGKMIREYKKEGKLVPS--EIIV--- 58 (169)
Q Consensus 2 ~GsGKsTla~~La~~~-~~~~i~~d~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~--~~~~--- 58 (169)
+.|||||||+.|.+.| |..+|+-||++....+- +.. +...+.-.+......+. +...
T Consensus 13 TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ar~~~v~~~ 92 (225)
T KOG3308|consen 13 TNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAPEAREHLVSYA 92 (225)
T ss_pred cCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccchHhhhhhhhh
Confidence 5799999999999988 57899999988665331 110 01111112222222211 1111
Q ss_pred --HHHHHH--HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 59 --KLLQKA--MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 59 --~~l~~~--~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+...+. +.......+|+|||-.. ..-.. ....|..|++..|.+++++|-..|
T Consensus 93 ~~~~~~~~~q~~~~~~~iviidGfmiy-~y~p~-----~~~~d~~im~~~~y~~~krRr~~R 148 (225)
T KOG3308|consen 93 NFEHYAQQFQIKAYKNHIVIIDGFMIY-NYKPQ-----VDLFDRIIMLTLDYETCKRRREAR 148 (225)
T ss_pred HHHHHhhhcCcccccCcEEEEecceEE-ecchh-----hhhhhhheeeeccHHHHHHhhccc
Confidence 111111 11222556888997221 11111 113678999999999999999988
No 157
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.80 E-value=1.9e-07 Score=63.22 Aligned_cols=136 Identities=22% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHHHHhcC---------CcchHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEAEAESG---------SNDGKMIREYKKEGKLVPSEIIVKLLQKAMQ 66 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (169)
-||.|||++|+.|++.+ | ..+++.+++-+...... +..+..+++.+. ....+.+..++.
T Consensus 20 LPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-------~~~l~dl~~~l~ 92 (222)
T PF01591_consen 20 LPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-------KEALEDLIEWLQ 92 (222)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 39999999999999766 3 46799998888875431 111222222111 111344455566
Q ss_pred cCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEc---CHHHHHHHHhcC--C-----CCCCCCcHHHHHHHHHHHh
Q 040894 67 ESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDC---SEEEMTRRILSR--N-----QGRVDDKIDTIKKRLNVYS 136 (169)
Q Consensus 67 ~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~---~~~~~~~R~~~R--~-----~~~~~~~~~~~~~~~~~~~ 136 (169)
...+..-|+|+...+.+....+..........++|+++ +++.+.+.+..- . ...+++..+.+.+|+..|.
T Consensus 93 ~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye 172 (222)
T PF01591_consen 93 EEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYE 172 (222)
T ss_dssp TS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHhhc
Confidence 55588899999888888777665531111245666665 555555544322 1 1112234567777888888
Q ss_pred hchhhHH
Q 040894 137 ESTLPVI 143 (169)
Q Consensus 137 ~~~~~~~ 143 (169)
....++-
T Consensus 173 ~~YEpl~ 179 (222)
T PF01591_consen 173 KVYEPLD 179 (222)
T ss_dssp TT-----
T ss_pred ccccccc
Confidence 8777764
No 158
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.76 E-value=3.2e-08 Score=68.27 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=24.6
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~ 29 (169)
++||||||+++.|++.++ ..+++.|++++
T Consensus 7 ~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 7 SSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999998774 45788888887
No 159
>PLN02772 guanylate kinase
Probab=98.71 E-value=3.3e-07 Score=66.65 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhh
Q 040894 58 VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSE 137 (169)
Q Consensus 58 ~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 137 (169)
.+.+...+.+ +..+|+|--+ .-...+.. ....+-.++++..+.+++.+|+..| +. +..+.+.+|+..+..
T Consensus 216 k~~V~~vl~~--Gk~vILdLD~---qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R--Gt--eseE~I~kRL~~A~~ 285 (398)
T PLN02772 216 IEAVEVVTDS--GKRCILDIDV---QGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR--GT--ETEEQIQKRLRNAEA 285 (398)
T ss_pred HHHHHHHHHh--CCcEEEeCCH---HHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHH
Confidence 4556666665 7788887432 23333333 3334444444455789999999988 44 345677778777643
Q ss_pred chhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 138 STLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 138 ~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
..... .+....+. +|.++ ++++.++++
T Consensus 286 Ei~~~--~~~~~fD~-vIvND-dLe~A~~~L 312 (398)
T PLN02772 286 ELEQG--KSSGIFDH-ILYND-NLEECYKNL 312 (398)
T ss_pred HHhhc--cccCCCCE-EEECC-CHHHHHHHH
Confidence 22110 01112233 34444 777777665
No 160
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.70 E-value=5.1e-09 Score=70.21 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCCCChhHHHHHHHHHh---CCceechhHHHHHHHhcCCcchHHHHHHHHcCCC--CC----HHHHHHHHHHHHHcCCCc
Q 040894 1 GPGSGKSTQCSKIAKHL---GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKL--VP----SEIIVKLLQKAMQESQNK 71 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~ 71 (169)
+|||||||+++.+...+ ++.+|+.|++-... + ........ ..... .. ..+...++...+.. +.
T Consensus 23 ~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-p---~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~a~~~--~~ 94 (199)
T PF06414_consen 23 QPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-P---DYDELLKA--DPDEASELTQKEASRLAEKLIEYAIEN--RY 94 (199)
T ss_dssp -TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-T---THHHHHHH--HCCCTHHHHHHHHHHHHHHHHHHHHHC--T-
T ss_pred CCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-c---chhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHc--CC
Confidence 69999999999999987 57788887754332 1 11111110 00000 00 11123334444554 77
Q ss_pred eEEEeCCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 72 NFVIDGFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 72 ~~i~d~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.+|+|+..........+... ..+--..++++.+|++....|+..|
T Consensus 95 nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R 141 (199)
T PF06414_consen 95 NIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQR 141 (199)
T ss_dssp -EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHH
T ss_pred CEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHH
Confidence 89999854433333312211 2222356888999999999999988
No 161
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.69 E-value=6.5e-08 Score=53.54 Aligned_cols=17 Identities=59% Similarity=0.866 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||+++.|++.+
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999999985
No 162
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.2e-06 Score=58.42 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=59.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc------CCcchHHHHHHH---H-cCCCC--CHHHH----------H
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES------GSNDGKMIREYK---K-EGKLV--PSEII----------V 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~------~~~~~~~~~~~~---~-~~~~~--~~~~~----------~ 58 (169)
+||.||||+|..||.++|+..+=..|.+++.+.+ .+.+........ . ..... -.... .
T Consensus 97 asGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~ 176 (299)
T COG2074 97 ASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIE 176 (299)
T ss_pred CCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHH
Confidence 6899999999999999998754444566655443 122222222211 1 11111 00000 2
Q ss_pred HHHHHHHHcCCCceEEEeCC---CCChHHHHHHHhhcCCCCCEEEEEEc-CHHHHHHHHhcC
Q 040894 59 KLLQKAMQESQNKNFVIDGF---PRNEENLSAAENILKIEPNAVLVFDC-SEEEMTRRILSR 116 (169)
Q Consensus 59 ~~l~~~~~~~~~~~~i~d~~---~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R 116 (169)
..++..+.+ +..+|++|. |....... . ....+.++|.+ +++....|.-.|
T Consensus 177 ~VI~RAi~e--G~~lIIEGvHlVPg~i~~~~-----~-~~n~~~~~l~i~dee~Hr~RF~~R 230 (299)
T COG2074 177 AVIERAIEE--GEDLIIEGVHLVPGLIKEEA-----L-GNNVFMFMLYIADEELHRERFYDR 230 (299)
T ss_pred HHHHHHHhc--CcceEEEeeeeccccccHhh-----h-ccceEEEEEEeCCHHHHHHHHHHH
Confidence 234445554 888999984 33322221 1 13345566655 677888888888
No 163
>PHA03136 thymidine kinase; Provisional
Probab=98.67 E-value=8.8e-07 Score=63.91 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.3
Q ss_pred CCCCCEEEEEEcCHHHHHHHHhcCCCCCCCC
Q 040894 93 KIEPNAVLVFDCSEEEMTRRILSRNQGRVDD 123 (169)
Q Consensus 93 ~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~ 123 (169)
.+.||.+|||+++++++.+|+.+| +|+.+
T Consensus 189 ~p~pD~IIyL~l~~e~~~~RI~kR--gR~~E 217 (378)
T PHA03136 189 EPHGGNIVIMDLDECEHAERIIAR--GRPGE 217 (378)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHc--CCCcc
Confidence 356899999999999999999999 66654
No 164
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.59 E-value=2.8e-07 Score=70.20 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCCCChhHHHHHHHHHhC-CceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-FRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-~~~i~~d~~~ 28 (169)
|+||||||+++.|+..++ ..++.+|++.
T Consensus 73 pSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 73 PSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 799999999999999874 4578887764
No 165
>PHA00729 NTP-binding motif containing protein
Probab=98.56 E-value=1.1e-06 Score=59.43 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCCCChhHHHHHHHHHhCC--ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeC
Q 040894 1 GPGSGKSTQCSKIAKHLGF--RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDG 77 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~ 77 (169)
+||+||||+|..|++.++. ..+..++..+.. +. ....+..+...+.++....... ...+|+|+
T Consensus 25 ~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~---~~-----------~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd 90 (226)
T PHA00729 25 KQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY---VQ-----------NSYFFELPDALEKIQDAIDNDYRIPLIIFDD 90 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhhcccccchhhHHhc---CC-----------cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 6999999999999998752 222222111111 00 0112222333444444443321 23468887
Q ss_pred CCCChH----HH------HHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 78 FPRNEE----NL------SAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 78 ~~~~~~----~~------~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
+-.-.. .. -.+.......+++++++.++++.+.+|+..|
T Consensus 91 ~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 91 AGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred CchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 311000 00 0111102235889999999999999999998
No 166
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=98.53 E-value=6.3e-07 Score=57.12 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=36.0
Q ss_pred cCCC-CCEEEEEEcCHHHHHHHHhcCCCCCCCC---cHHHHHHHH-HHHhhchhhHHHHhhhcCcEEEEeCCC
Q 040894 92 LKIE-PNAVLVFDCSEEEMTRRILSRNQGRVDD---KIDTIKKRL-NVYSESTLPVINYYSSKGKVRKIDAGR 159 (169)
Q Consensus 92 ~~~~-~~~~i~l~~~~~~~~~R~~~R~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~ 159 (169)
.... ||++|||++|++++.+|+.+| ||+.+ ..+++.... ..|..... .+ ...++++||++.
T Consensus 63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E~~i~~~Yl~~L~~~~y~~~~~----~~-~~~~vl~id~~~ 128 (146)
T PF01712_consen 63 EIPKSPDLIIYLDASPETCLERIKKR--GREEEKNIPLEYLERLHEEAYEDWLK----KY-DSTPVLVIDADN 128 (146)
T ss_dssp HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGGTTS-HHHHHHHHHHHHCCHHS----CC-TTTTGCEEEECE
T ss_pred HhhccCCeEEEEeCCHHHHHHHHHHh--CCchhcCCCHHHHHHHhHHHHHHHHH----hC-CCCceEEEECCc
Confidence 4455 999999999999999999999 77766 333443333 23333321 12 223566777654
No 167
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.47 E-value=4e-07 Score=60.25 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcC-HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHh
Q 040894 58 VKLLQKAMQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCS-EEEMTRRILSRNQGRVDDKIDTIKKRLNVYS 136 (169)
Q Consensus 58 ~~~l~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 136 (169)
...+...+.. +..+|+|.- ..-...+.. ... .-.+||+.++ .+.+.+|+..| +. +..+.+.+++....
T Consensus 83 ~~~i~~~~~~--gk~~il~~~---~~g~~~L~~-~~~-~~~~IfI~~~s~~~l~~~l~~r--~~--~~~~~i~~r~~~~~ 151 (183)
T PF00625_consen 83 KSAIDKVLEE--GKHCILDVD---PEGVKQLKK-AGF-NPIVIFIKPPSPEVLKRRLRRR--GD--ESEEEIEERLERAE 151 (183)
T ss_dssp HHHHHHHHHT--TTEEEEEET---HHHHHHHHH-CTT-TEEEEEEEESSHHHHHHHHHTT--TH--CHHHHHHHHHHHHH
T ss_pred cchhhHhhhc--CCcEEEEcc---HHHHHHHHh-ccc-CceEEEEEccchHHHHHHHhcc--cc--ccHHHHHHHHHHHH
Confidence 4556666665 777888743 344455555 433 3378888765 67777777666 32 34445555554444
Q ss_pred hchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 137 ESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
... ..+.. -+. +|.+ .++++++++|
T Consensus 152 ~~~----~~~~~-fd~-vi~n-~~le~~~~~l 176 (183)
T PF00625_consen 152 KEF----EHYNE-FDY-VIVN-DDLEEAVKEL 176 (183)
T ss_dssp HHH----GGGGG-SSE-EEEC-SSHHHHHHHH
T ss_pred HHH----hHhhc-CCE-EEEC-cCHHHHHHHH
Confidence 322 12222 233 4444 3799888876
No 168
>PLN02165 adenylate isopentenyltransferase
Probab=98.47 E-value=2.7e-07 Score=65.86 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|+||||||+|..||+.++..+++.|.+
T Consensus 51 PTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 51 ATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCcHHHHHHHHHHHcCCceecCChh
Confidence 799999999999999999999999876
No 169
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.45 E-value=8.5e-06 Score=55.77 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=43.5
Q ss_pred CEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEEEEeCCCChHHHHHhh
Q 040894 97 NAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 97 ~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i 168 (169)
-.++||+++.+++.+|...-.+.+|-.....+...+..-++...|+ +..+++++.+++.++-++.+.|
T Consensus 84 ~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL----k~~A~~vIDTs~ls~~~Lr~~i 151 (286)
T COG1660 84 PRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL----REIADLVIDTSELSVHELRERI 151 (286)
T ss_pred ceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH----HHHhhhEeecccCCHHHHHHHH
Confidence 3699999999999999974212333322222444444444444443 3344667888899999998876
No 170
>PRK09169 hypothetical protein; Validated
Probab=98.43 E-value=8.2e-06 Score=69.72 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=75.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE-eCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI-DGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-d~~~ 79 (169)
++|+||||+++.|+..+++.++|.|..+... .++.|..++.... .+.+.....+...+. ...+|- +|+-
T Consensus 2118 ~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr---~~vVLSTGGGa 2187 (2316)
T PRK09169 2118 EVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR---WEVVLPAEGFG 2187 (2316)
T ss_pred CCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---CCeEEeCCCCc
Confidence 5899999999999999999999999999876 5677777774333 788888888888775 233332 5554
Q ss_pred CChHH-HHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 80 RNEEN-LSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..... ...+.. ..++||+..+.+++.+|+.+.
T Consensus 2188 v~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2188 AAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred ccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence 43333 333444 568999999999999999753
No 171
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.40 E-value=3.1e-06 Score=55.81 Aligned_cols=107 Identities=20% Similarity=0.224 Sum_probs=52.1
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CC------cchHHH--HHHH---HcC-------CCCCHHHHHHHHH
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GS------NDGKMI--REYK---KEG-------KLVPSEIIVKLLQ 62 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~------~~~~~~--~~~~---~~~-------~~~~~~~~~~~l~ 62 (169)
.|||++|+|+.||+.+|++++|. +++...... +- ...... ..++ ..+ .............
T Consensus 8 ~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T PF13189_consen 8 YGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDKIFRAQS 86 (179)
T ss_dssp TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------HHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHHHHHHHH
Confidence 69999999999999999999997 566554332 10 001111 1111 111 1112222233333
Q ss_pred HHHHcCC-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 63 KAMQESQ-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 63 ~~~~~~~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
..+.... ...+|+-|. ... +.. ...+..+.|||.+|.+.+.+|++.|
T Consensus 87 ~~i~~la~~~~~Vi~GR--~a~----~il-~~~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 87 EIIRELAAKGNCVIVGR--CAN----YIL-RDIPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHH---EEEEST--THH----HHT-TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHhccCCEEEEec--CHh----hhh-CCCCCeEEEEEECCHHHHHHHHHHH
Confidence 3333221 345666552 211 222 3334579999999999999999987
No 172
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.39 E-value=1.3e-05 Score=51.34 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=43.3
Q ss_pred CCCCChhHHHHHHHHHhC-CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLG-FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~~ 79 (169)
.+|+||||++..|++-|| +.++..|++-... +. .+...+...+.......+|.|+-.
T Consensus 7 tiGCGKTTva~aL~~LFg~wgHvQnDnI~~k~---------------------~~-~f~~~~l~~L~~~~~~vViaDRNN 64 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLFGEWGHVQNDNITGKR---------------------KP-KFIKAVLELLAKDTHPVVIADRNN 64 (168)
T ss_pred CCCcCHHHHHHHHHHHcCCCCccccCCCCCCC---------------------HH-HHHHHHHHHHhhCCCCEEEEeCCC
Confidence 489999999999999999 9888877764320 11 113333334433336677789876
Q ss_pred CChHHHHHHH
Q 040894 80 RNEENLSAAE 89 (169)
Q Consensus 80 ~~~~~~~~~~ 89 (169)
....+..++.
T Consensus 65 h~~reR~ql~ 74 (168)
T PF08303_consen 65 HQKRERKQLF 74 (168)
T ss_pred chHHHHHHHH
Confidence 6655555544
No 173
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=9.6e-06 Score=51.58 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCCCChhHHHHHHHHHh--CCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHL--GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d~~ 78 (169)
|.||||||+-..+-..+ +..+++.|.+..+..+.++. ...+.. ...+...+..++.. +.++..+..
T Consensus 10 ~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~-~~~i~A---------~r~ai~~i~~~I~~--~~~F~~ETt 77 (187)
T COG4185 10 PNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPT-SAAIQA---------ARVAIDRIARLIDL--GRPFIAETT 77 (187)
T ss_pred CCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCch-HHHHHH---------HHHHHHHHHHHHHc--CCCcceEEe
Confidence 68999999977654444 46789998888776333322 111111 11124445555555 677777653
Q ss_pred ---CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhhhcCcEE
Q 040894 79 ---PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYSSKGKVR 153 (169)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
+........... .+--..+.++.--+.+...+|+..| ++|+. -.+..++.|+.. ....+...+...+.+.
T Consensus 78 LS~~s~~~~ik~Ak~-~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~-IpED~Ir~RY~r---sle~l~~~l~l~dr~~ 152 (187)
T COG4185 78 LSGPSILELIKTAKA-AGFYIVLNYIVIDSVELAVERVKLRVAKGGHD-IPEDKIRRRYRR---SLELLAQALTLADRAT 152 (187)
T ss_pred eccchHHHHHHHHHh-CCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHH---HHHHHHHHHhhcceeE
Confidence 222222222222 2222222222333667899999998 44443 223344444333 2222223344445555
Q ss_pred EEeCC
Q 040894 154 KIDAG 158 (169)
Q Consensus 154 ~id~~ 158 (169)
+-|++
T Consensus 153 IydNS 157 (187)
T COG4185 153 IYDNS 157 (187)
T ss_pred EecCC
Confidence 55553
No 174
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.34 E-value=1.3e-06 Score=60.17 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=46.4
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHHhhchhhHHHHhh
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRLNVYSESTLPVINYYS 147 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (169)
...+|++|........ .|.. ...-+|+.||++++.+.+.+|+..| ..+. .....-...+..|..+.+......+
T Consensus 187 pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~--~a~~~~~~~~~~~~~~~~~~a~~~a 262 (283)
T COG1072 187 PDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYIERFLKFGL--TAFEDPASYFHNYAPLSEREAIESA 262 (283)
T ss_pred CCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHHHHHHhccc--chhhChhhHhhccCcchHHHHHHhh
Confidence 4567778842222221 1222 4456899999999999999999999 2221 1112222334566666655544444
Q ss_pred hcCcEEEEe
Q 040894 148 SKGKVRKID 156 (169)
Q Consensus 148 ~~~~~~~id 156 (169)
. ..|.+++
T Consensus 263 ~-~~w~~in 270 (283)
T COG1072 263 R-AIWDNIN 270 (283)
T ss_pred h-hcceeeh
Confidence 3 2444443
No 175
>PHA03134 thymidine kinase; Provisional
Probab=98.24 E-value=0.00016 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.1
Q ss_pred CEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 040894 97 NAVLVFDCSEEEMTRRILSRNQGRVDDK 124 (169)
Q Consensus 97 ~~~i~l~~~~~~~~~R~~~R~~~~~~~~ 124 (169)
+.+|+++.++++..+|+.+| +|+.|.
T Consensus 165 ~niVl~~l~~~e~~~Rl~~R--~R~gE~ 190 (340)
T PHA03134 165 GNLVVTTLNPDEHLRRLRAR--ARIGEQ 190 (340)
T ss_pred CeEEEEeCCHHHHHHHHHHc--CCCccc
Confidence 89999999999999999999 666654
No 176
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.16 E-value=1.7e-05 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.9
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
.||+||||+++.|++.+++..++
T Consensus 223 lp~~GKStia~~L~~~l~~~~~~ 245 (664)
T PTZ00322 223 LPGRGKTYVARQIQRYFQWNGLQ 245 (664)
T ss_pred cCCCChhHHHHHHHHHHHhcCCC
Confidence 48999999999999998654443
No 177
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.09 E-value=9.6e-05 Score=47.04 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCChhHHHHHHHHHhCCce--echhHHHHHHHhcC---CcchHHHHH-HHHcCCC----CCHHHH---HHHHHHHHHc
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH--LSAGDLLEAEAESG---SNDGKMIRE-YKKEGKL----VPSEII---VKLLQKAMQE 67 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~--i~~d~~~~~~~~~~---~~~~~~~~~-~~~~~~~----~~~~~~---~~~l~~~~~~ 67 (169)
.|.||||++|..+..-+..++ +-+|.+... +.+. ...+..... ...++.. .+..+. .......|..
T Consensus 31 ~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~-lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~~~r~ai~a 109 (205)
T COG3896 31 GSSAGKSSIALAFQDLAAEPWMHIGIDLFWEA-LPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMHSRRRAIRA 109 (205)
T ss_pred CCccchhHHHHHHHHHhhcchhhhhHHHHHHh-CCHHhhccccccccccccccCCceeeEeechhHHHHHHHHHHHHHHH
Confidence 367999999999988776554 444444443 3321 111100000 0011110 011111 1111112221
Q ss_pred --CCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhchhhHHHH
Q 040894 68 --SQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSRNQGRVDDKIDTIKKRLNVYSESTLPVINY 145 (169)
Q Consensus 68 --~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
..+..+|.|.+-.+..............+...|-+.+|.|+..+|-.+| +........- .+...-
T Consensus 110 ~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr--~dR~pG~~rg-----~~r~vH------ 176 (205)
T COG3896 110 YADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR--GDRHPGWNRG-----SARAVH------ 176 (205)
T ss_pred HhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc--CCcCcchhhh-----hHHHhc------
Confidence 1377889998766655554444335567778999999999999998877 3222222111 111111
Q ss_pred hhhcCcEEEEeCCCChHHHHHhh
Q 040894 146 YSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 146 ~~~~~~~~~id~~~~~~~v~~~i 168 (169)
....+++-+.++..+|.|.+..|
T Consensus 177 a~~~YDlevDTS~~tp~EcAr~i 199 (205)
T COG3896 177 ADAEYDLEVDTSATTPHECAREI 199 (205)
T ss_pred CCcceeeeecccCCCHHHHHHHH
Confidence 11234655666678888877765
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.06 E-value=2.8e-06 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+++.+++.++.+++..
T Consensus 6 ~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCeeHHHHHHHhhcccccccc
Confidence 799999999999999999776443
No 179
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=98.04 E-value=0.00087 Score=46.89 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=20.8
Q ss_pred CCCEEEEEEcCHHHHHHHHhcCCCCCCCCc
Q 040894 95 EPNAVLVFDCSEEEMTRRILSRNQGRVDDK 124 (169)
Q Consensus 95 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~ 124 (169)
.-+-+|.++.|.++..+|+.+| +|+.|.
T Consensus 145 pG~niVl~~L~~~E~~rRl~~R--~R~gE~ 172 (281)
T PF00693_consen 145 PGTNIVLMTLPEEEHLRRLKAR--GRPGER 172 (281)
T ss_dssp TTEEEEEEE--HHHHHHHHHHT--STTT-S
T ss_pred CCCEEEEEeCCHHHHHHHHHHc--CCCccc
Confidence 4456888999999999999999 777665
No 180
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=98.03 E-value=1.4e-05 Score=53.63 Aligned_cols=106 Identities=16% Similarity=0.062 Sum_probs=51.5
Q ss_pred CCCChhHHHHHHHHHhCC-----ceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEEe
Q 040894 2 PGSGKSTQCSKIAKHLGF-----RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVID 76 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~-----~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~d 76 (169)
|+|||||.|+.|.+.+.- .++-.++-.. -++.+...+...++. .-+......+.+.+.. +..+|+|
T Consensus 10 P~SGKstrA~~L~~~l~~~~~K~~v~ii~desl-g~~~ns~y~~s~~EK------~lRg~L~S~v~R~Lsk--~~iVI~D 80 (281)
T KOG3062|consen 10 PCSGKSTRAVELREALKERGTKQSVRIIDDESL-GIEKNSNYGDSQAEK------ALRGKLRSAVDRSLSK--GDIVIVD 80 (281)
T ss_pred CCCCchhHHHHHHHHHHhhcccceEEEechhhc-CCCCcccccccHHHH------HHHHHHHHHHHhhccc--CcEEEEe
Confidence 899999999999998832 1211112110 001111112111111 0111123333444443 7788888
Q ss_pred CCCCChHHHHHHHhh--cCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 77 GFPRNEENLSAAENI--LKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
....-....-.+... .....-.+|+..+|.+.+.+--..|
T Consensus 81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062|consen 81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence 631111110001100 1122335899999999999998877
No 181
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.6e-05 Score=59.58 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhc-CCcchHHHHHHHHcC-CC-------------C------CHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAES-GSNDGKMIREYKKEG-KL-------------V------PSEIIVK 59 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~-~~-------------~------~~~~~~~ 59 (169)
|||+|||.+|+.+|.+++.++++.. ....+.. -.+-.+.+++.|... .. . .++....
T Consensus 231 PPGCGKT~lA~AiAgel~vPf~~is--ApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErR 308 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELGVPFLSIS--APEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERR 308 (802)
T ss_pred CCCccHHHHHHHHhhhcCCceEeec--chhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHH
Confidence 8999999999999999999988842 1222221 112234455544321 00 0 1112233
Q ss_pred HHHHHHHcC--------CCceEEEeCC---CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 60 LLQKAMQES--------QNKNFVIDGF---PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 60 ~l~~~~~~~--------~~~~~i~d~~---~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
.+.+++... .+..+++-|. |..++-. +. ..+..|.-|.|.+|.++.++++.+
T Consensus 309 iVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpa--LR--RaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 309 IVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPA--LR--RAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred HHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHH--Hh--ccccccceeeecCCchHHHHHHHH
Confidence 344444321 1445555442 3333322 22 456789999999999999998865
No 182
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.01 E-value=6e-05 Score=51.43 Aligned_cols=138 Identities=15% Similarity=0.035 Sum_probs=79.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~ 78 (169)
+.||||..+.+.|.+.++-.++.+-.+-. ....+.....+.+.....| |...|+++.
T Consensus 39 ~DaAGKg~~I~~l~~~lDPRg~~v~~~~~---------------------pt~eE~~~p~lwRfw~~lP~~G~i~IF~rS 97 (230)
T TIGR03707 39 RDAAGKGGTIKRITEHLNPRGARVVALPK---------------------PSDRERTQWYFQRYVQHLPAAGEIVLFDRS 97 (230)
T ss_pred CCCCCchHHHHHHHHhcCCCeeEEEeCCC---------------------CCHHHHcChHHHHHHHhCCCCCeEEEEeCc
Confidence 36999999999999999755555311110 1112222444555554443 666777763
Q ss_pred CCC----------------------hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC--CC--cHHHHHHH
Q 040894 79 PRN----------------------EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV--DD--KIDTIKKR 131 (169)
Q Consensus 79 ~~~----------------------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~--~~--~~~~~~~~ 131 (169)
-.. +..++.... ..+..-+-|||.+|.++..+|+..| ..... .- ..-...+.
T Consensus 98 wY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~-~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~ 176 (230)
T TIGR03707 98 WYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLV-RDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDR 176 (230)
T ss_pred hhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Confidence 111 111112111 4455668999999999999999988 11111 01 12233344
Q ss_pred HHHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 132 LNVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
+..|.......+..-. ..++|++|+++..
T Consensus 177 yd~y~~a~e~~l~~T~t~~APW~iI~a~dk 206 (230)
T TIGR03707 177 WDDYSRAKDEMFARTDTPEAPWTVVRSDDK 206 (230)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 5666666655554433 3469999999754
No 183
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.92 E-value=1.3e-05 Score=50.60 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|++.+.
T Consensus 7 psGsGKstl~~~L~~~~~ 24 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 799999999999999864
No 184
>PHA03135 thymidine kinase; Provisional
Probab=97.91 E-value=0.00092 Score=48.05 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.|+||||+++.+++..
T Consensus 18 ~~GvGKTT~~~~l~~~~ 34 (343)
T PHA03135 18 PFGIGKTSMLNEMPDHS 34 (343)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 57999999999999863
No 185
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.91 E-value=2.7e-05 Score=52.66 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=29.0
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
++.+|++|....+++- .|.. .....|...+++++-++.++|+.+|
T Consensus 235 ~rIvI~EGnYlLl~~~-~Wkd-i~k~~d~k~~idV~~~~a~~RVa~R 279 (323)
T KOG2702|consen 235 TRIVILEGNYLLLDQE-NWKD-IYKTLDDKYKIDVDYEAAEERVAKR 279 (323)
T ss_pred ceEEEEeccEEEecCc-cHHH-HHHHhhhheeccccHHHHHHHHHHH
Confidence 5567777743322221 1222 2223566799999999999999999
No 186
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.87 E-value=0.00013 Score=55.08 Aligned_cols=137 Identities=10% Similarity=-0.002 Sum_probs=77.6
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCCC
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGFP 79 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~~ 79 (169)
.||||+++.+.|.+.++-..+.+-.+-. ..+.+.....+.......| |...|+|+.-
T Consensus 49 DaaGKg~~I~~l~~~ldprg~~v~~~~~---------------------P~~eE~~~~flwRfw~~lP~~G~I~IFdRSW 107 (493)
T TIGR03708 49 DGAGKGETINLLNEWMDPRGIETHAFGR---------------------PSDEERERPPMWRFWRRLPPKGKIGIFFGSW 107 (493)
T ss_pred CCCChHHHHHHHHHHhCcCccEEEeCCC---------------------CCHHHhcCcHHHHHHHhCCCCCeEEEEcCcc
Confidence 6999999999999999654444211111 1111222344444444433 6667777631
Q ss_pred --CC--------------------hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC--CC--cHHHHHHHH
Q 040894 80 --RN--------------------EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV--DD--KIDTIKKRL 132 (169)
Q Consensus 80 --~~--------------------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~--~~--~~~~~~~~~ 132 (169)
.. +..++.+.. ..+..-+-+||.++.++..+|+..| ..... .- ..-.-.+.+
T Consensus 108 Y~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~-~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~~w 186 (493)
T TIGR03708 108 YTRPLIERLEGRIDEAKLDSHIEDINRFERMLA-DDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLKVY 186 (493)
T ss_pred cchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHHhH
Confidence 11 111122111 4455668999999999999999988 21111 01 112333446
Q ss_pred HHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 133 NVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
..|.......+..-. ..++|++|+++..
T Consensus 187 d~Y~~a~e~ml~~T~t~~APW~vI~addK 215 (493)
T TIGR03708 187 DRYRKLAERMLRYTSTPYAPWTVVEGEDD 215 (493)
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 666666655544433 3458999999764
No 187
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.85 E-value=1.2e-05 Score=54.37 Aligned_cols=21 Identities=43% Similarity=0.626 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|||.||||+|+.+|+.++..+
T Consensus 58 PPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 58 PPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp STTSSHHHHHHHHHHHCT--E
T ss_pred CCccchhHHHHHHHhccCCCe
Confidence 899999999999999998654
No 188
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.78 E-value=0.0002 Score=49.90 Aligned_cols=137 Identities=10% Similarity=0.030 Sum_probs=77.7
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCC-
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGF- 78 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~- 78 (169)
.||||..+.+.|.+.++-.++.+-.+-. ....+.....+.+.....+ |...|+++.
T Consensus 65 DaAGKG~~I~~l~~~lDPRg~~V~s~~~---------------------Pt~eE~~~p~lWRfw~~lP~~G~i~IF~RSW 123 (264)
T TIGR03709 65 DAAGKDGTIRHVMSGVNPQGCQVTSFKA---------------------PSAEELDHDFLWRIHKALPERGEIGIFNRSH 123 (264)
T ss_pred CCCCchHHHHHHHHhcCCCeeEEEeCCC---------------------CCHHHHcCchHHHHHHhCCCCCeEEEEcCcc
Confidence 6899999999999999755555311210 1111122344444444433 666777763
Q ss_pred -CCCh--------------------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC----CCcHHHHHHHH
Q 040894 79 -PRNE--------------------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV----DDKIDTIKKRL 132 (169)
Q Consensus 79 -~~~~--------------------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~----~~~~~~~~~~~ 132 (169)
...+ ..++.... ..+..-+-|||.++.+++.+|+..| ..... ....-...+.+
T Consensus 124 Y~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~-~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~y 202 (264)
T TIGR03709 124 YEDVLVVRVHGLIPKAIWERRYEDINDFERYLT-ENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYW 202 (264)
T ss_pred ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHH-HCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhH
Confidence 1110 11111111 4455568999999999999999988 11111 11122334456
Q ss_pred HHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 133 NVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
..|.......+..-. ..++|++|+++..
T Consensus 203 d~y~~a~e~~l~~T~t~~APW~iI~a~dk 231 (264)
T TIGR03709 203 DDYMEAYEDALTATSTKHAPWYVVPADDK 231 (264)
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 666666555544433 3569999998754
No 189
>PHA03133 thymidine kinase; Provisional
Probab=97.73 E-value=0.0058 Score=44.34 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCCCEEEEEEcCHHHHHHHHhcCCCCCCCCcH
Q 040894 94 IEPNAVLVFDCSEEEMTRRILSRNQGRVDDKI 125 (169)
Q Consensus 94 ~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 125 (169)
.+-+-+|+++.+.++..+|+.+| +|+.|..
T Consensus 192 ~pG~NiVl~~L~~~E~~~RL~~R--~R~gE~~ 221 (368)
T PHA03133 192 TPGTNLVLGALPEAAHAERLAQR--QRPGERL 221 (368)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc--CCCcccc
Confidence 44568999999999999999999 7776653
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.71 E-value=9e-05 Score=46.07 Aligned_cols=75 Identities=23% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCCCChhHHHHHHHHHh--------CCceechhHHHHHHHhcCCcchHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCC
Q 040894 1 GPGSGKSTQCSKIAKHL--------GFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKL--VPSEIIVKLLQKAMQESQN 70 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~--------~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 70 (169)
|||+||||+++.+++.+ +..++...-- .. .....+...+...+..... .......+.+...+.....
T Consensus 12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~ 88 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP--SS-RTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRV 88 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH--HH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTE
T ss_pred CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC--CC-CCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCC
Confidence 69999999999999987 4444332110 10 0001123333333332222 2344445777777776433
Q ss_pred ceEEEeCC
Q 040894 71 KNFVIDGF 78 (169)
Q Consensus 71 ~~~i~d~~ 78 (169)
..+|+|..
T Consensus 89 ~~lviDe~ 96 (131)
T PF13401_consen 89 VLLVIDEA 96 (131)
T ss_dssp EEEEEETT
T ss_pred eEEEEeCh
Confidence 45777875
No 191
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.69 E-value=3.1e-05 Score=56.29 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+|+.+|..++..+...
T Consensus 56 PPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCceEEe
Confidence 899999999999999998776543
No 192
>PHA03138 thymidine kinase; Provisional
Probab=97.68 E-value=0.0048 Score=44.50 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=19.2
Q ss_pred CCEEEEEEcCHHHHHHHHhcCCCCCCCCcH
Q 040894 96 PNAVLVFDCSEEEMTRRILSRNQGRVDDKI 125 (169)
Q Consensus 96 ~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~ 125 (169)
.++||++- +..+..+|+.+| +|++|..
T Consensus 169 ~nLVv~~l-~~~E~~~RL~~R--~R~gE~~ 195 (340)
T PHA03138 169 TNLIVCTV-SLPNHLSRISKR--ARPGEII 195 (340)
T ss_pred CcEEEEeC-CcHHHHHHHHhc--CCCcccc
Confidence 45666666 544599999999 7776553
No 193
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.66 E-value=3.2e-05 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+||||||+|..||+.++..+++.|.
T Consensus 12 ptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 12 PTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 79999999999999999999999887
No 194
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.65 E-value=0.00032 Score=49.12 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+++.+
T Consensus 50 ppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 50 NPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999999875
No 195
>PF13173 AAA_14: AAA domain
Probab=97.64 E-value=0.00064 Score=42.28 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCCChhHHHHHHHHHhC----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~----~~~i~~d~~~~ 29 (169)
|.|+||||+++.+++.+. +.+++.++...
T Consensus 10 ~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 689999999999998765 55676655544
No 196
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.63 E-value=8.2e-05 Score=48.65 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.6
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
||||||||+|..|+..++.+
T Consensus 9 ~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 9 GARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CCCccHHHHHHHHHHHcCCC
Confidence 69999999999999988743
No 197
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.62 E-value=8.1e-05 Score=49.86 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=52.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH-HhcC--Ccch---HHH------HHHHHcCCCCCHHHHHHHHHHHHHcC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE-AESG--SNDG---KMI------REYKKEGKLVPSEIIVKLLQKAMQES 68 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~-~~~~--~~~~---~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (169)
|+|+|||.+|-.||+++|.++|..|.+-.-. +.-+ .+.. ... ...+.+|. ++.+...+.+...+.+.
T Consensus 9 pT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li~~v~~~ 87 (233)
T PF01745_consen 9 PTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLISEVNSY 87 (233)
T ss_dssp STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHHHHHHTT
T ss_pred CCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999988654322 1111 1110 000 11123343 44444555555555544
Q ss_pred C-CceEEEeCCCCChHHHHHHHhh---cCCCCCEEEEEEcCH-HHHHHHHhcC
Q 040894 69 Q-NKNFVIDGFPRNEENLSAAENI---LKIEPNAVLVFDCSE-EEMTRRILSR 116 (169)
Q Consensus 69 ~-~~~~i~d~~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~-~~~~~R~~~R 116 (169)
. +.++|++|-...+- ..+... ...-...+..+.++. +.-..|..+|
T Consensus 88 ~~~~~~IlEGGSISLl--~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 88 SAHGGLILEGGSISLL--NCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp TTSSEEEEEE--HHHH--HHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred cccCceEEeCchHHHH--HHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 3 77899987322111 111110 122233566777654 5555666666
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.59 E-value=6.4e-05 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.2
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+|||++++.+|+.++.+++.
T Consensus 7 ~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 7 PPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp SSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCHHHHHHHHHHHhhcceEE
Confidence 79999999999999999876533
No 199
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.59 E-value=4.9e-05 Score=53.63 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+|||||++|..|++.++..+++.|.
T Consensus 7 ~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 7 PTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEech
Confidence 79999999999999999999999886
No 200
>PLN02840 tRNA dimethylallyltransferase
Probab=97.58 E-value=4.2e-05 Score=56.53 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|+||||||++..|+++++..+++.|.
T Consensus 29 ptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 29 PTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 79999999999999999988888775
No 201
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.55 E-value=0.0011 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++.+++..
T Consensus 267 PpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 267 IQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999887654
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=5.2e-05 Score=47.29 Aligned_cols=20 Identities=45% Similarity=0.685 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
||||||||+++.++..+...
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 10 PPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCCcHHHHHHHHHhccCCC
Confidence 79999999999999988653
No 203
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=5.9e-05 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEA 32 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~ 32 (169)
+|||||||+++.|+++ |++++. ...+...
T Consensus 7 ~~stGKTTL~~~L~~~-g~~~v~--E~ar~~~ 35 (163)
T PF13521_consen 7 GPSTGKTTLIEALAAR-GYPVVP--EYAREII 35 (163)
T ss_dssp -TTSHHHHHHHHHHHH-T-EEE----TTHHHH
T ss_pred CCCCCHHHHHHHHHHc-CCeEEe--ecHHHHH
Confidence 5899999999999998 888773 3555543
No 204
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.002 Score=49.91 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCCChhHHHHHHHHHhCCceechh--HHHHHHHhcCCcchHHHHHHHHcCC------CCCH--------------HHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG--DLLEAEAESGSNDGKMIREYKKEGK------LVPS--------------EIIV 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--------------~~~~ 58 (169)
|||+||||+|+.||..-++.++++. .++-..+.. -...+++.|.... ..++ ....
T Consensus 476 PPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe---SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~ 552 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE---SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTD 552 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc---hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHH
Confidence 8999999999999999988887752 233222111 1122222221100 0111 2223
Q ss_pred HHHHHHHHcCC-----CceEEEeCC--CCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhc
Q 040894 59 KLLQKAMQESQ-----NKNFVIDGF--PRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILS 115 (169)
Q Consensus 59 ~~l~~~~~~~~-----~~~~i~d~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 115 (169)
..+.+++.... ...+|+-.. |..+..+ +. ..+..|.+||+..|......++.+
T Consensus 553 RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A--Ll--RPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 553 RVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA--LL--RPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred HHHHHHHHHcccccccCcEEEEeccCChhhcCHH--Hc--CCcccceeEeecCccHHHHHHHHH
Confidence 44444444321 234454332 2222221 11 345689999999999888877764
No 205
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0022 Score=47.68 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 231 ptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999999765
No 206
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.50 E-value=7.3e-05 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|||+||||+|+.||+.++.+++..+.
T Consensus 55 ppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 55 PTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 79999999999999999998888764
No 207
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.49 E-value=0.0006 Score=43.67 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=45.2
Q ss_pred CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC--CCCCCCCcHHHHHHHH--HHHhhchhhHHHH
Q 040894 70 NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR--NQGRVDDKIDTIKKRL--NVYSESTLPVINY 145 (169)
Q Consensus 70 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 145 (169)
..++|+||--.. .. ..+..++-|||++++++..+|-... ..|. ....+.+.+.+ ..+.+..+.....
T Consensus 62 ~~~vV~eGRDig--Tv------VfPdA~~KifLtAs~e~RA~RR~~e~~~~g~-~~~~e~v~~~i~~RD~~D~~R~~aPL 132 (157)
T PF02224_consen 62 KGGVVMEGRDIG--TV------VFPDADLKIFLTASPEVRARRRYKELQEKGK-KVSYEEVLEDIKERDERDSNREVAPL 132 (157)
T ss_dssp TSCEEEEESSCC--CC------CCTT-SEEEEEE--HHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHCTSSS-S
T ss_pred cCCeEEecCCCc--eE------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHhhChhhccCccCCC
Confidence 678999983111 00 3456889999999999999887544 2232 22333333222 1122222111111
Q ss_pred hhhcCcEEEEeCCCChHHHHHhh
Q 040894 146 YSSKGKVRKIDAGRPIEEVFDEI 168 (169)
Q Consensus 146 ~~~~~~~~~id~~~~~~~v~~~i 168 (169)
-...+-+++.+++.++++|+++|
T Consensus 133 ~~a~DAi~IDts~lti~evv~~i 155 (157)
T PF02224_consen 133 KKAEDAIVIDTSNLTIEEVVEKI 155 (157)
T ss_dssp S--TTSEEEETTTS-HHHHHHHH
T ss_pred ccCCCeEEEECCCCCHHHHHHHH
Confidence 12234556666789999999987
No 208
>PRK06620 hypothetical protein; Validated
Probab=97.49 E-value=0.00073 Score=45.91 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=19.8
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||||||++++.+++..+..++.
T Consensus 52 p~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 52 PSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred CCCCCHHHHHHHHHhccCCEEcc
Confidence 79999999999999988765555
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.46 E-value=7.8e-05 Score=54.04 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=17.4
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
||||||||+|+.|++.++.
T Consensus 86 PPGsGKStla~~La~~l~~ 104 (361)
T smart00763 86 PVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 8999999999999998854
No 210
>PRK06761 hypothetical protein; Provisional
Probab=97.46 E-value=7.3e-05 Score=52.63 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
||||||||+++.|++.+..
T Consensus 11 ~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CCCCCHHHHHHHHHHhcCc
Confidence 6999999999999999864
No 211
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.44 E-value=9.1e-05 Score=54.76 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
|||+||||+|+.||+.++.+++..|.
T Consensus 58 p~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 58 PTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCCCCHHHHHHHHHHHhCChheeecc
Confidence 79999999999999999988887764
No 212
>PF13245 AAA_19: Part of AAA domain
Probab=97.42 E-value=0.00012 Score=41.11 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=12.8
Q ss_pred CCCCChh-HHHHHHHHHh
Q 040894 1 GPGSGKS-TQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKs-Tla~~La~~~ 17 (169)
||||||| |+++.++..+
T Consensus 18 ~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 7999999 6666666654
No 213
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.41 E-value=0.0077 Score=38.72 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=17.4
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|-.||||||++.||..+|..
T Consensus 16 ~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 16 GESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred CcccChHHHHHHHHHHhCCC
Confidence 34699999999999999874
No 214
>CHL00181 cbbX CbbX; Provisional
Probab=97.41 E-value=0.00072 Score=48.02 Aligned_cols=17 Identities=47% Similarity=0.730 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+++.+
T Consensus 67 ~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 67 SPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998875
No 215
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=9.3e-05 Score=52.56 Aligned_cols=19 Identities=37% Similarity=0.863 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+++.||+++.+
T Consensus 185 PPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred CCCCChhHHHHHHHHhhee
Confidence 8999999999999999964
No 216
>PLN02748 tRNA dimethylallyltransferase
Probab=97.36 E-value=0.00013 Score=54.92 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH--HHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD--LLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~--~~~ 29 (169)
|+||||||||..||++++..+|+.|. +++
T Consensus 30 ptgsGKs~la~~la~~~~~eii~~DsmQVYr 60 (468)
T PLN02748 30 PTGSGKSKLAVDLASHFPVEIINADSMQVYS 60 (468)
T ss_pred CCCCCHHHHHHHHHHhcCeeEEcCchheeeC
Confidence 78999999999999999999999985 444
No 217
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.36 E-value=0.00014 Score=50.25 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=16.9
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.+++++.
T Consensus 4 paGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 899999999999999985
No 218
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.36 E-value=0.00017 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.0
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++|+.|++.+|.+++
T Consensus 29 ~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999987765
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.35 E-value=0.00017 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+||||+++.||+.++++++
T Consensus 72 ~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCChHHHHHHHHHHHHCCCeE
Confidence 7999999999999999998765
No 220
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.33 E-value=9.4e-05 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
+||.||||+++.||+.++..+-.
T Consensus 7 ~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 7 VPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp ---HHHHHHHHHHHHHTT--EEE
T ss_pred CCccHHHHHHHHHHHHcCCceeE
Confidence 69999999999999999876543
No 221
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.31 E-value=0.00017 Score=53.58 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|||+||||+|+.||+.++.+++..+
T Consensus 116 p~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 116 PTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecc
Confidence 7999999999999999988766543
No 222
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.29 E-value=0.00021 Score=44.63 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
++||||||+++.+++.++..
T Consensus 30 ~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999863
No 223
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.29 E-value=0.00012 Score=50.01 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=65.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGF 78 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~ 78 (169)
+.||||+.+.+.|.+.++-.++.+-.+-.. ...+.....+.+.....| |...|+|+.
T Consensus 39 ~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p---------------------t~eE~~~p~lwRfw~~lP~~G~I~if~rS 97 (228)
T PF03976_consen 39 WDASGKGGTINRLIEWLDPRGFRVHAFGKP---------------------TDEELRRPFLWRFWRALPARGQIGIFDRS 97 (228)
T ss_dssp STTSSHHHHHHHHHCCS-GGGEEEEE-SS-----------------------HHHHTS-TTHHHHTTS--TT-EEEEES-
T ss_pred cccCCchHHHHHHHHhCCCCeeEEEeCCCC---------------------ChhHcCCCcHHHHHHhCCCCCEEEEEecc
Confidence 469999999999999886433332111100 001111233444444433 677777773
Q ss_pred CC--Ch--------------------HHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC--CCcHHH--HHHH
Q 040894 79 PR--NE--------------------ENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV--DDKIDT--IKKR 131 (169)
Q Consensus 79 ~~--~~--------------------~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~--~~~~~~--~~~~ 131 (169)
.. .+ ..++.... ..+..-+-|||.++.++..+|+..| .+... .-+... ..+.
T Consensus 98 WY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~-~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~ 176 (228)
T PF03976_consen 98 WYEDVLVERVEGFIDEAEWERRLEEINRFERMLA-DDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSPEDWEQRKH 176 (228)
T ss_dssp GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--HHHHHHHCC
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCHHHHHHHhh
Confidence 11 00 01111111 3444557899999999999999988 11111 011121 1223
Q ss_pred HHHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 132 LNVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
+..|.......+..-. ..++|++|+++..
T Consensus 177 yd~y~~a~~~~l~~T~t~~APW~iI~a~dk 206 (228)
T PF03976_consen 177 YDRYQKAYEEMLERTDTPYAPWHIIPADDK 206 (228)
T ss_dssp HHHHHHHHHHHHHHH-BSSS-EEEEE-SSH
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCCH
Confidence 4555544444433322 3569999999754
No 224
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.28 E-value=0.02 Score=37.46 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=60.6
Q ss_pred CCCChhHHHHHHHHHhCC---ceechhHHHHHHHhcCCcchHHHHHHHHcCCCC--CHHHHHHH-----------HHH-H
Q 040894 2 PGSGKSTQCSKIAKHLGF---RHLSAGDLLEAEAESGSNDGKMIREYKKEGKLV--PSEIIVKL-----------LQK-A 64 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~---~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------l~~-~ 64 (169)
.+|||.|+|..|.++++. .++...+-++..+... .+......+.++.+- .+..+..+ ..+ .
T Consensus 8 rksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~--~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~F~r~~ 85 (182)
T TIGR01223 8 RKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQE--HGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKI 85 (182)
T ss_pred CCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHH--hChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccHHHHHH
Confidence 479999999999998874 2455545555443321 111222222111100 01111111 111 1
Q ss_pred HHcCCCceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 65 MQESQNKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 65 ~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
........||+++. +-...+..+.. ..+.-.+.|-+.+++++..+|.-..
T Consensus 86 ~~~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 86 VEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred HhccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence 11212457777774 44455556666 4455668999999999999998655
No 225
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.002 Score=40.90 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=14.8
Q ss_pred CCCChhHHHHHHHHHh
Q 040894 2 PGSGKSTQCSKIAKHL 17 (169)
Q Consensus 2 ~GsGKsTla~~La~~~ 17 (169)
+||||||+|-.|.+.+
T Consensus 40 SgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 40 SGSGKSTLACALSQAL 55 (207)
T ss_pred CCCCchhHHHHHHHHH
Confidence 7999999999998877
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00021 Score=45.71 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
||||||||++..+++.+.-..+.++.++...
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 7999999999999998854434444444443
No 227
>PRK09087 hypothetical protein; Validated
Probab=97.24 E-value=0.00034 Score=47.92 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=25.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~ 31 (169)
|+|||||++++.+++..+..+++.+++....
T Consensus 52 ~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~ 82 (226)
T PRK09087 52 PVGSGKTHLASIWREKSDALLIHPNEIGSDA 82 (226)
T ss_pred CCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence 6899999999999999888888876544433
No 228
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.23 E-value=0.0004 Score=47.08 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=25.7
Q ss_pred CCCCChhHHHHHHHHHhCCce-echhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH-LSAGDLLEAEA 32 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~-i~~d~~~~~~~ 32 (169)
.|||||||+|+.+.+. +.++ +++++.++..+
T Consensus 8 ~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 8 KKRSGKDTVADFIIEN-YNAVKYQLADPIKEIL 39 (227)
T ss_pred CCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHH
Confidence 4899999999999775 6666 88888888764
No 229
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.23 E-value=0.0029 Score=48.06 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CceEEEeCCC
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ--NKNFVIDGFP 79 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~d~~~ 79 (169)
.||||....+.|.+.++-..+.+-.+- .....+.....+.......| |...|+|++-
T Consensus 308 DaAGKgg~I~rl~~~ldPrg~~v~~~~---------------------~Pt~~E~~~~~lwRf~~~lP~~G~i~iFdRSw 366 (493)
T TIGR03708 308 DAAGKGGAIRRVTEALDARQYRVVPIA---------------------APTDEEKAQHYLWRFWRHIPRRGRITIFDRSW 366 (493)
T ss_pred cCCCCcHHHHHHHhhcCCCeeEEEeCC---------------------CcCHHHHcCcHHHHHHHhCCCCCeEEEEcCCc
Confidence 589999999999888865544431111 11122223455555555544 6667778741
Q ss_pred --CC--------------------hHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC-CCCCC----CCcHHHHHHHH
Q 040894 80 --RN--------------------EENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR-NQGRV----DDKIDTIKKRL 132 (169)
Q Consensus 80 --~~--------------------~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R-~~~~~----~~~~~~~~~~~ 132 (169)
.. +..++.... ..+..-+-+||.++.++..+|+..| ..... .+..-.-.+.+
T Consensus 367 Y~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~-~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~t~~D~~~r~~w 445 (493)
T TIGR03708 367 YGRVLVERVEGFCSEAEWLRAYGEINDFEEQLT-EHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKITDEDWRNREKW 445 (493)
T ss_pred cCCcceeeecCCCCHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcCCHHHHHHHHhH
Confidence 10 111111111 4455668999999999999999988 21111 11112333456
Q ss_pred HHHhhchhhHHHHhh-hcCcEEEEeCCCC
Q 040894 133 NVYSESTLPVINYYS-SKGKVRKIDAGRP 160 (169)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~id~~~~ 160 (169)
..|.......+..-. ..++|++|.++.-
T Consensus 446 ~~Y~~a~~~ml~~T~t~~APW~vI~a~dK 474 (493)
T TIGR03708 446 DAYEDAVNDMIDRTSTIIAPWTLVEANDK 474 (493)
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEeCCCh
Confidence 677766665554443 3469999998753
No 230
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.22 E-value=0.0018 Score=47.13 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=57.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CceEEEeCCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQ-NKNFVIDGFP 79 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~d~~~ 79 (169)
+.|||||++...|.+. +..++|..+..+..-. .+|... .+.. ....+-..+...+.... ...+++++-.
T Consensus 149 ~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrGS---~fG~~~-----~~qp-sQ~~Fe~~l~~~l~~~~~~~~i~vE~Es 218 (345)
T PRK11784 149 NTGSGKTELLQALANA-GAQVLDLEGLANHRGS---SFGRLG-----GPQP-SQKDFENLLAEALLKLDPARPIVVEDES 218 (345)
T ss_pred CCcccHHHHHHHHHhc-CCeEEECCchhhhccc---cccCCC-----CCCc-chHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 5799999999999775 7889998777765421 111100 0111 12222344444454433 4667776421
Q ss_pred C-------ChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 80 R-------NEENLSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 80 ~-------~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
. ...-...+.. .-.|++++|.+...+|+...
T Consensus 219 ~~IG~~~lP~~l~~~m~~------~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 219 RRIGRVHLPEALYEAMQQ------APIVVVEAPLEERVERLLED 256 (345)
T ss_pred ccccCccCCHHHHHHHhh------CCEEEEECCHHHHHHHHHHH
Confidence 1 1111222222 24789999999999999875
No 231
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.19 E-value=0.0003 Score=52.16 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
++|||||||++.|++++|...
T Consensus 227 ~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 227 GESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred CCCCCHHHHHHHHHHHhCCCe
Confidence 689999999999999998764
No 232
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.00031 Score=44.06 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+++.+++.+
T Consensus 27 ~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 27 PPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 233
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00025 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+...+|..+++.+.+.
T Consensus 243 PPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred CCCCCHHHHHHHHHhhcCCceEEe
Confidence 899999999999999999988774
No 234
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.17 E-value=0.0003 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.||+.++.++...
T Consensus 124 P~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 124 PTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEEe
Confidence 799999999999999998776543
No 235
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.13 E-value=0.00029 Score=42.23 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~ 28 (169)
|+||||||+++.+. -+-..+..+++.
T Consensus 23 pSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 23 DSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred CCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 79999999999997 233334444444
No 236
>PLN02796 D-glycerate 3-kinase
Probab=97.12 E-value=0.00025 Score=51.17 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~ 29 (169)
|+||||||+++.|+..+. ...++.|+++.
T Consensus 108 ~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 108 PQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 689999999999998874 34577777663
No 237
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.11 E-value=0.0012 Score=43.19 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=16.9
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+||||||+|..++...+.+
T Consensus 7 ~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 7 GARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CCCCCHHHHHHHHHHhcCCC
Confidence 68999999999998876543
No 238
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.00033 Score=54.76 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||.||||||+.+|++-|+.++++
T Consensus 334 ppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CCCCChhHHHHHHHHhcCceEEEe
Confidence 799999999999999999988764
No 239
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.08 E-value=0.0004 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+|||++|+.+|+.++..++.
T Consensus 173 ppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 173 PPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred CCCCChHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876544
No 240
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.00033 Score=47.62 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+.+.++-
T Consensus 39 pSGSGKSTLLniig~ 53 (226)
T COG1136 39 PSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCCCHHHHHHHHhc
Confidence 899999999999965
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.06 E-value=0.00046 Score=41.52 Aligned_cols=18 Identities=50% Similarity=0.628 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+|||++++.|++.+.
T Consensus 6 ~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 689999999999998763
No 242
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00034 Score=47.05 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+.|.|-.
T Consensus 36 pSGSGKSTlLRclN~ 50 (240)
T COG1126 36 PSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCCCHHHHHHHHHC
Confidence 899999999999943
No 243
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.05 E-value=0.00053 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
+|||||||+++.|+..++..++.
T Consensus 170 ~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 170 GESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CCCCCHHHHHHHHHHhhCCCEEe
Confidence 68999999999999999987644
No 244
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.04 E-value=0.00055 Score=42.15 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
+-||||||+++.+++.+|..
T Consensus 23 dLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp STTSSHHHHHHHHHHHTT--
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 46999999999999999763
No 245
>PRK04195 replication factor C large subunit; Provisional
Probab=97.03 E-value=0.00046 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+|+.|++.+++.++..
T Consensus 47 ppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 47 PPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 899999999999999999776543
No 246
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.02 E-value=0.00052 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+|+.+++.++..++..
T Consensus 164 ppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEec
Confidence 799999999999999998766543
No 247
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.02 E-value=0.00038 Score=50.48 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.+|--
T Consensus 39 PSGcGKTTlLR~IAGf 54 (352)
T COG3842 39 PSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 8999999999999863
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.02 E-value=0.00056 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.5
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
||||||||..+.||+.+|+.+..
T Consensus 53 P~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 53 PSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCCCHHHHHHHHHHHhCCeeEE
Confidence 89999999999999999976544
No 249
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.00057 Score=47.83 Aligned_cols=20 Identities=45% Similarity=0.659 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||-||||+|+.+|..+|..
T Consensus 60 PPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 60 PPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred CCCCcHHHHHHHHHHHhcCC
Confidence 89999999999999999753
No 250
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.00058 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++++.+|...+..++..
T Consensus 187 ppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 187 PPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999998776553
No 251
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.00056 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++++.+|...+.+++..
T Consensus 96 ppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 96 PPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeec
Confidence 899999999999999998876654
No 252
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.00044 Score=47.21 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.|+-..
T Consensus 41 eSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 41 ESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999997643
No 253
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.97 E-value=0.00065 Score=44.34 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||+.+.+.+.+
T Consensus 7 ~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 69999999999999988
No 254
>PHA02244 ATPase-like protein
Probab=96.94 E-value=0.00067 Score=49.51 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|||+|||++|+.++..++.+++.+..+
T Consensus 127 ppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 127 GAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 799999999999999999888766543
No 255
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.93 E-value=0.00075 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|||+||||+|+.+|+.++..+
T Consensus 59 ppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCccHHHHHHHHHHHhCCCe
Confidence 799999999999999998654
No 256
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.89 E-value=0.00084 Score=48.06 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.+++.++..
T Consensus 38 p~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999998754
No 257
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.89 E-value=0.00074 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+|+.+++..+..++.
T Consensus 44 ppGtGKTtLA~~ia~~~~~~~~~ 66 (413)
T PRK13342 44 PPGTGKTTLARIIAGATDAPFEA 66 (413)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999998766544
No 258
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.00093 Score=47.56 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~~ 28 (169)
|.|||||-+|-.||+++|.++|++|.+-
T Consensus 11 PTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 11 PTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 7899999999999999999999998643
No 259
>PF05729 NACHT: NACHT domain
Probab=96.88 E-value=0.00075 Score=43.50 Aligned_cols=17 Identities=59% Similarity=0.821 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||+++.++..+
T Consensus 8 ~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 58999999999999877
No 260
>PRK14974 cell division protein FtsY; Provisional
Probab=96.87 E-value=0.0035 Score=45.54 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||.+..||..+
T Consensus 148 ~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999888888766
No 261
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.86 E-value=0.00082 Score=49.05 Aligned_cols=28 Identities=46% Similarity=0.799 Sum_probs=22.8
Q ss_pred CCCCChhHHHHHHHHHhCCcee--chhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL--SAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i--~~d~~~ 28 (169)
|||+|||.+|+.+|+.+|+.++ +..++.
T Consensus 156 PPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 8999999999999999998754 444444
No 262
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.00068 Score=46.51 Aligned_cols=17 Identities=41% Similarity=0.300 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||+.+.+|--.
T Consensus 37 pSGcGKSTLLriiAGL~ 53 (248)
T COG1116 37 PSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 79999999999998643
No 263
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.84 E-value=0.00099 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+|||++|+.+|..++..++.
T Consensus 225 PPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 225 PPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCCCHHHHHHHHHHhhCCCEEE
Confidence 79999999999999998876654
No 264
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.82 E-value=0.005 Score=46.07 Aligned_cols=25 Identities=44% Similarity=0.654 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHh---CC--ceechh
Q 040894 1 GPGSGKSTQCSKIAKHL---GF--RHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~--~~i~~d 25 (169)
++||||||.+..||..+ |. .+++.|
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 68999999999999877 43 345554
No 265
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.81 E-value=0.00097 Score=35.76 Aligned_cols=16 Identities=44% Similarity=0.412 Sum_probs=13.2
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|.||||||+...+.--
T Consensus 31 ~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 31 PNGSGKSTLLDAIQTV 46 (62)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6899999999887543
No 266
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0098 Score=47.36 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=60.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechh--HHHHHHHhcCCcchHHHHHHHHc----------------------C--CCCCH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG--DLLEAEAESGSNDGKMIREYKKE----------------------G--KLVPS 54 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d--~~~~~~~~~~~~~~~~~~~~~~~----------------------~--~~~~~ 54 (169)
|||+|||-||+.+|-.-|.+++++. .++......+ ...+++++.. + .....
T Consensus 352 PPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~---asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~ 428 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG---ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQ 428 (774)
T ss_pred CCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc---hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCC
Confidence 8999999999999999999887643 4554443332 2223332211 0 11122
Q ss_pred HHHHHHHHHHHHcC---C-CceEEEeCCCCChHHHHHHHhhcCCCCCEEEEEEcCHHHHHHHHh
Q 040894 55 EIIVKLLQKAMQES---Q-NKNFVIDGFPRNEENLSAAENILKIEPNAVLVFDCSEEEMTRRIL 114 (169)
Q Consensus 55 ~~~~~~l~~~~~~~---~-~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~ 114 (169)
....+-+.+++-.. . +..+|+.+........+.-.. ..+..|..|+++.|...-...+.
T Consensus 429 ~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-rpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 429 DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-RPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-CCCccccceeccCCchhhhHHHH
Confidence 22233344444322 1 445666554333332222222 45778899999998876666654
No 267
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.81 E-value=0.00064 Score=50.39 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLLE 29 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~~ 29 (169)
++||||||+++.|...+. ...|+.|+++.
T Consensus 220 ~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 220 PQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 689999999999987663 44678887773
No 268
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.80 E-value=0.0067 Score=41.41 Aligned_cols=111 Identities=20% Similarity=0.320 Sum_probs=53.3
Q ss_pred CCCCChhHHHHHHHHHh-----C--CceechhHHHHHHHhc--CCcchHHHHHHHHc-C-------CCC-----CHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----G--FRHLSAGDLLEAEAES--GSNDGKMIREYKKE-G-------KLV-----PSEIIV 58 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~--~~~i~~d~~~~~~~~~--~~~~~~~~~~~~~~-~-------~~~-----~~~~~~ 58 (169)
|+|+|||.|++.++..+ + ..+++.+++....... ...... +.+.+.. . ..+ ..+...
T Consensus 42 ~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf 120 (219)
T PF00308_consen 42 PSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLRSADLLIIDDIQFLAGKQRTQEELF 120 (219)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHCTSSEEEEETGGGGTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhhcCCEEEEecchhhcCchHHHHHHH
Confidence 68999999999998765 2 3477777777665332 112112 2222211 1 011 122334
Q ss_pred HHHHHHHHcCCCceEEE--eCCCCChHH-HHHHHhhcCCCCCEEEEEEcCHHHHHHHHhcC
Q 040894 59 KLLQKAMQESQNKNFVI--DGFPRNEEN-LSAAENILKIEPNAVLVFDCSEEEMTRRILSR 116 (169)
Q Consensus 59 ~~l~~~~~~~~~~~~i~--d~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 116 (169)
.++...... +..+|+ +..|..... .+.+.. .. .--+++-|..|.+..+.++..+
T Consensus 121 ~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S-Rl-~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 121 HLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS-RL-SWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp HHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH-HH-HCSEEEEE----HHHHHHHHHH
T ss_pred HHHHHHHhh--CCeEEEEeCCCCccccccChhhhh-hH-hhcchhhcCCCCHHHHHHHHHH
Confidence 444444444 445554 334544331 122222 11 1346788888887777777654
No 269
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.0044 Score=42.36 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
||++||||+.+.+|+-+.
T Consensus 145 pP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 145 PPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CCCCChHHHHHHHHHHhh
Confidence 899999999999998663
No 270
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.00095 Score=50.65 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+|+.+|+.++.
T Consensus 44 PpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 44 PRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999875
No 271
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0036 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
+.|||||-||=-||.+|+..+|+.|.
T Consensus 15 ~TGsGKSrLaVdLA~rf~~EIINsDk 40 (348)
T KOG1384|consen 15 ATGAGKSRLAVDLATRFPGEIINSDK 40 (348)
T ss_pred CCCCChhhhHHHHHHhCCceeecccc
Confidence 57999999999999999999988774
No 272
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.78 E-value=0.001 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHh----CCceech
Q 040894 1 GPGSGKSTQCSKIAKHL----GFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~----~~~~i~~ 24 (169)
||||||||+...+.+.+ .+.++--
T Consensus 21 p~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 21 PPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 79999999998876666 4555543
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.78 E-value=0.00093 Score=46.87 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.++..+.
T Consensus 51 ~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 799999999999998875
No 274
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.00079 Score=48.61 Aligned_cols=16 Identities=44% Similarity=0.391 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.+|=-
T Consensus 37 PSGcGKSTlLr~IAGL 52 (338)
T COG3839 37 PSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 8999999999999753
No 275
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.77 E-value=0.001 Score=44.69 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|...+.
T Consensus 9 ptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 9 PTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 789999999999887774
No 276
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.022 Score=41.97 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||-||+.+|-..+..++++
T Consensus 253 PPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred CCCCcHHHHHHHHHHhhcCeEEEe
Confidence 899999999999999999766554
No 277
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0028 Score=45.85 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=28.2
Q ss_pred CCCCChhHHHHHHHHHhCCceech--hHHHHHHHhcCC
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA--GDLLEAEAESGS 36 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~--d~~~~~~~~~~~ 36 (169)
|||+|||-+|+.+|.+.++.+|.+ ..++...+..|+
T Consensus 193 PPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 193 PPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 899999999999999999877653 356666654443
No 278
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|||+|||.+|+.+|..++.++++.+
T Consensus 284 pPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCeEEEee
Confidence 8999999999999998888776653
No 279
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.74 E-value=0.0012 Score=43.31 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHh---CC--ceechh
Q 040894 1 GPGSGKSTQCSKIAKHL---GF--RHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~--~~i~~d 25 (169)
||||||||++..++..+ +. .+++.|
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 69999999999998876 33 346655
No 280
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.74 E-value=0.0019 Score=44.27 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCCCChhHHHHHHHHHh-----CCceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~~i~~d~~~ 28 (169)
|+|||||++++.+++.. ...+++..+..
T Consensus 50 ~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 50 EAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 69999999999999876 45566665543
No 281
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.73 E-value=0.0013 Score=41.96 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|+||||||+|..|.++ ++.++.-|
T Consensus 22 ~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 22 PSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CCCCCHHHHHHHHHHc-CCeEEECC
Confidence 6999999999998775 66666533
No 282
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.72 E-value=0.0011 Score=47.00 Aligned_cols=17 Identities=41% Similarity=0.739 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+++.+
T Consensus 66 ~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 66 NPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999998888766
No 283
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0028 Score=48.25 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||||||+||..+|..-+++++.
T Consensus 546 p~~sGKTaLAA~iA~~S~FPFvK 568 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALSSDFPFVK 568 (744)
T ss_pred CCCCChHHHHHHHHhhcCCCeEE
Confidence 79999999999999998888766
No 284
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.72 E-value=0.044 Score=41.04 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHh-----C--CceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----G--FRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~--~~~i~~d~~~~~~ 31 (169)
|||+|||++++.+++.+ + ..+++..++....
T Consensus 144 ~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~ 181 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF 181 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence 79999999999998866 3 3356766665543
No 285
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.69 E-value=0.0013 Score=43.03 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.3
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+|||.+|+.||+.+..
T Consensus 11 psGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLFV 29 (171)
T ss_dssp STTSSHHHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999884
No 286
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0013 Score=48.41 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+|+.+++.+++
T Consensus 46 p~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 46 TRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999875
No 287
>CHL00176 ftsH cell division protein; Validated
Probab=96.69 E-value=0.0014 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|...+.+++..
T Consensus 224 PpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeec
Confidence 899999999999999998877654
No 288
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.069 Score=42.29 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+||||+++.|++.+++
T Consensus 46 P~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 46 TRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999987
No 289
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.67 E-value=0.0012 Score=41.78 Aligned_cols=19 Identities=47% Similarity=0.936 Sum_probs=16.3
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
.||+|||||.+.|+.. |+.
T Consensus 17 gpGaGKTtLL~aLa~~-Gfa 35 (183)
T COG3911 17 GPGAGKTTLLAALARA-GFA 35 (183)
T ss_pred CCCCcHHHHHHHHHHc-Cce
Confidence 4999999999999886 654
No 290
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.0014 Score=49.63 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.||+.+++.
T Consensus 48 P~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 48 PRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCCHHHHHHHHHHhcCcc
Confidence 79999999999999999763
No 291
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.64 E-value=0.0014 Score=41.57 Aligned_cols=18 Identities=50% Similarity=0.652 Sum_probs=16.5
Q ss_pred CCCChhHHHHHHHHHhCC
Q 040894 2 PGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~ 19 (169)
-||||||+++.+++.++.
T Consensus 34 LGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 34 LGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CcCChHHHHHHHHHHcCC
Confidence 499999999999999985
No 292
>PRK10646 ADP-binding protein; Provisional
Probab=96.64 E-value=0.0015 Score=41.84 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=16.7
Q ss_pred CCCChhHHHHHHHHHhCC
Q 040894 2 PGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~ 19 (169)
-||||||+++.+++.+|.
T Consensus 37 LGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 37 LGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 599999999999999986
No 293
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0012 Score=44.91 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|.||||||++..|+-+-++.+
T Consensus 38 PNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 38 PNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred CCCCCHHHHHHHHhCCCCceE
Confidence 789999999999987766544
No 294
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.60 E-value=0.0015 Score=48.73 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=16.6
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+|..||+.+.
T Consensus 271 ~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 271 APGAGKSTFAQALAEFYA 288 (604)
T ss_pred CCCCChhHHHHHHHHHHH
Confidence 799999999999999873
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.0016 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||++..++...
T Consensus 7 ~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 7 PTGSGKTTLALQLALNI 23 (165)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998876
No 296
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0056 Score=46.76 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|-|+||||+||.+|+.+++..
T Consensus 46 ~RGvGKTt~Ari~AkalNC~~ 66 (515)
T COG2812 46 PRGVGKTTIARILAKALNCEN 66 (515)
T ss_pred CCCcCchhHHHHHHHHhcCCC
Confidence 679999999999999998753
No 297
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.082 Score=36.10 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+||+|+...|-+.++.
T Consensus 45 psg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 45 PSGVGKSTLLKRLREELGG 63 (231)
T ss_pred CCCcchhHHHHHHHHHcCC
Confidence 7899999999999998873
No 298
>PLN03025 replication factor C subunit; Provisional
Probab=96.58 E-value=0.0016 Score=47.05 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+|+.+|+.+
T Consensus 42 p~G~GKTtla~~la~~l 58 (319)
T PLN03025 42 PPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999999987
No 299
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.58 E-value=0.0016 Score=42.59 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
++||||||+++.|...+.
T Consensus 14 ~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 14 WSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 589999999999987774
No 300
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0013 Score=46.57 Aligned_cols=17 Identities=41% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.+|--.
T Consensus 36 pSGaGKsTlLRiIAGLe 52 (345)
T COG1118 36 PSGAGKSTLLRIIAGLE 52 (345)
T ss_pred CCCCcHHHHHHHHhCcC
Confidence 79999999999998643
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.57 E-value=0.0015 Score=42.44 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.+|.-.
T Consensus 37 PSG~GKStllk~va~Li 53 (223)
T COG4619 37 PSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCCccHHHHHHHHHhcc
Confidence 89999999999998854
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.0093 Score=44.33 Aligned_cols=15 Identities=60% Similarity=0.820 Sum_probs=14.3
Q ss_pred CCChhHHHHHHHHHh
Q 040894 3 GSGKSTQCSKIAKHL 17 (169)
Q Consensus 3 GsGKsTla~~La~~~ 17 (169)
||||||-+..||.++
T Consensus 110 GsGKTTt~~KLA~~l 124 (451)
T COG0541 110 GSGKTTTAGKLAKYL 124 (451)
T ss_pred CCChHhHHHHHHHHH
Confidence 999999999999988
No 303
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.56 E-value=0.0014 Score=43.06 Aligned_cols=16 Identities=44% Similarity=0.457 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.+|--
T Consensus 33 pSGaGKSTLLnLIAGF 48 (231)
T COG3840 33 PSGAGKSTLLNLIAGF 48 (231)
T ss_pred CCCccHHHHHHHHHhc
Confidence 7999999999999863
No 304
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.0018 Score=49.55 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=18.5
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.+|+.+++.
T Consensus 51 p~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 51 IRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCCCHHHHHHHHHHHhcCc
Confidence 79999999999999999764
No 305
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.54 E-value=0.0014 Score=44.45 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 37 HSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 306
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.54 E-value=0.0015 Score=44.41 Aligned_cols=17 Identities=35% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 38 ~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 38 PSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998754
No 307
>PRK06893 DNA replication initiation factor; Validated
Probab=96.53 E-value=0.0028 Score=43.56 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.0
Q ss_pred CCCCChhHHHHHHHHHh-----CCceechh
Q 040894 1 GPGSGKSTQCSKIAKHL-----GFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~~~~i~~d 25 (169)
|||+|||+++..+++.+ +..+++..
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 79999999999999876 44566653
No 308
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.53 E-value=0.026 Score=42.87 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCCCChhHHHHHHHHHh-----C--CceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----G--FRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~--~~~i~~d~~~~~~ 31 (169)
|||+|||++++.++..+ + ..+++..++....
T Consensus 156 ~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~ 193 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF 193 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 79999999999999876 2 2356666665443
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.53 E-value=0.0019 Score=44.76 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||+...|...+
T Consensus 37 ~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 37 PPGAGKSTLIDALIREL 53 (266)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999998877
No 310
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.52 E-value=0.058 Score=42.35 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCCCChhHHHHHHHHHh-----C--CceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----G--FRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~--~~~i~~d~~~~~~ 31 (169)
++|+|||.|++.+++.+ + ..+++..+++...
T Consensus 322 ~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 322 ESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 58999999999998865 2 3567777776554
No 311
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.019 Score=42.60 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.|+||||.+..||.++
T Consensus 182 ptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 312
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.52 E-value=0.0022 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++++.+|+.++.+++
T Consensus 51 ~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 51 PPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCCccHHHHHHHHHHHhCCCeE
Confidence 7999999999999999986543
No 313
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.52 E-value=0.002 Score=43.94 Aligned_cols=17 Identities=41% Similarity=0.698 Sum_probs=13.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+||||++..+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 89999998776666654
No 314
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.52 E-value=0.0016 Score=44.07 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 35 PNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.51 E-value=0.0019 Score=45.74 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||+++.+...+
T Consensus 112 ~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 112 SPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999888775
No 316
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.0018 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+|||++|+.+|..++..++..
T Consensus 495 ppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 495 PPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999998877654
No 317
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.51 E-value=0.0016 Score=43.31 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 26 ~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 26 ANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 318
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.50 E-value=0.0016 Score=44.10 Aligned_cols=17 Identities=41% Similarity=0.364 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 35 PSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.50 E-value=0.0015 Score=43.00 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 33 PNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCChHHHHHHHHHcCC
Confidence 68999999999998754
No 320
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.49 E-value=0.007 Score=41.81 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.1
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|||||||+++..++..
T Consensus 29 ~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWN 44 (237)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7999999999876543
No 321
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.49 E-value=0.0022 Score=42.98 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||.+.+||.++
T Consensus 9 ptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARL 25 (196)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHH
Confidence 78999999999999987
No 322
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.48 E-value=0.0017 Score=43.77 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 34 KNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 323
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.47 E-value=0.0022 Score=42.21 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++|+||||+++.+.+.+
T Consensus 32 ~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999887766
No 324
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.47 E-value=0.0018 Score=45.08 Aligned_cols=18 Identities=44% Similarity=0.374 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|.||||||+.+.|+.-+.
T Consensus 36 pNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 36 PNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 789999999999998663
No 325
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.47 E-value=0.0023 Score=51.06 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=20.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|||+||||+|+.+++..+..++..+
T Consensus 60 PpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 60 PPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCCCCHHHHHHHHHHHhcCcceeeh
Confidence 7999999999999998876654443
No 326
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0018 Score=43.75 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 34 PNGAGKTTTIRMILGII 50 (210)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 327
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0018 Score=43.80 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 33 PNGAGKTTLMRILATLT 49 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 328
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.44 E-value=0.0021 Score=42.49 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.+....
T Consensus 36 pSGAGKSTllkLi~~~e 52 (223)
T COG2884 36 PSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CCCCCHHHHHHHHHhhh
Confidence 79999999999997765
No 329
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.44 E-value=0.0016 Score=40.74 Aligned_cols=17 Identities=47% Similarity=0.464 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+.+.|+..+
T Consensus 19 ~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 19 PNGSGKSTLLKALAGLL 35 (137)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred cCCCccccceeeecccc
Confidence 68999999999997755
No 330
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.43 E-value=0.0022 Score=42.61 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|...+.
T Consensus 33 ~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 33 GTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 689999999999987663
No 331
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0019 Score=44.51 Aligned_cols=17 Identities=47% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 34 PSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 332
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.43 E-value=0.0025 Score=41.02 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..|...+
T Consensus 7 ~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 7 PKNSGKTTLIERLVKAL 23 (155)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 333
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.43 E-value=0.0023 Score=46.44 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=16.4
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+|+.+++.+.
T Consensus 44 p~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 44 PPGSGKTAAVRALARELY 61 (337)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 799999999999999873
No 334
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.02 Score=43.32 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCCChhHHHHHHHHHhCCceechhHH
Q 040894 2 PGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 2 ~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
.|+||||+|+.|-+-++++++.-|++
T Consensus 383 igcgktt~ak~l~~lf~w~~vqnd~l 408 (758)
T COG5324 383 IGCGKTTVAKILEKLFGWPVVQNDNL 408 (758)
T ss_pred eccCcccHHHHHHHHcCCcccccCCC
Confidence 59999999999999999999987776
No 335
>PRK04328 hypothetical protein; Provisional
Probab=96.42 E-value=0.0079 Score=41.92 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=13.4
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|||||||+++..++..
T Consensus 31 ~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 31 GPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999886554
No 336
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.42 E-value=0.0019 Score=43.94 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 36 HNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 337
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.42 E-value=0.0019 Score=43.75 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++-.+
T Consensus 36 ~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 36 PSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.41 E-value=0.0022 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|||+||||+++.++..++..++.
T Consensus 220 ppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCCChHHHHHHHHHHhCCeEEE
Confidence 79999999999999999876654
No 339
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.002 Score=43.66 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 34 PSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 340
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.41 E-value=0.0026 Score=43.92 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~ 26 (169)
|||+|||+++..+++... ..++..+.
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 799999999999988664 34666654
No 341
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.41 E-value=0.0025 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHhCCce
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH 21 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~ 21 (169)
|||+||||+++.+++.++..+
T Consensus 51 ~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 51 SPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred cCCCCHHHHHHHHHHHhCccc
Confidence 799999999999999886543
No 342
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.002 Score=43.90 Aligned_cols=17 Identities=41% Similarity=0.300 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 38 PSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 343
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.40 E-value=0.0021 Score=43.57 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 34 PSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 344
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.40 E-value=0.0023 Score=48.89 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.9
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+|||++++.+++.++..
T Consensus 224 PPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 224 PPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCcHHHHHHHHHHhhccc
Confidence 89999999999999998643
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.40 E-value=0.002 Score=42.39 Aligned_cols=14 Identities=43% Similarity=0.363 Sum_probs=12.9
Q ss_pred CCCCChhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIA 14 (169)
Q Consensus 1 ~~GsGKsTla~~La 14 (169)
|+||||||+.+.+.
T Consensus 29 ~nG~GKSTLl~~il 42 (176)
T cd03238 29 VSGSGKSTLVNEGL 42 (176)
T ss_pred CCCCCHHHHHHHHh
Confidence 78999999999985
No 346
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.39 E-value=0.0021 Score=49.64 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=16.5
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+++.|++.+.
T Consensus 111 PpG~GKSsLa~~la~~le 128 (644)
T PRK15455 111 PVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 899999999999999773
No 347
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0021 Score=44.24 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 43 SSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 348
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0021 Score=44.22 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 39 RSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 349
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.39 E-value=0.002 Score=43.94 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 34 RNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 350
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.38 E-value=0.0021 Score=43.24 Aligned_cols=17 Identities=41% Similarity=0.321 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 32 ESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 351
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0022 Score=42.25 Aligned_cols=17 Identities=47% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 34 PSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 352
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0026 Score=49.08 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=17.6
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+||||+|+.||+.+++
T Consensus 46 p~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 46 TRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7999999999999998875
No 353
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.38 E-value=0.0026 Score=43.41 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHHhC-----CceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHLG-----FRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~-----~~~i~~d~~~ 28 (169)
|+||||||+|+.+++... +.+++...+.
T Consensus 46 ~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 799999999999988762 3456655444
No 354
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.002 Score=43.41 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+.+.|-+.
T Consensus 41 PSGcGKST~LR~lNRm 56 (253)
T COG1117 41 PSGCGKSTLLRCLNRM 56 (253)
T ss_pred CCCcCHHHHHHHHHhh
Confidence 8999999999999543
No 355
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.0026 Score=48.45 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+|+||||+|+.+|+.+++.
T Consensus 43 p~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 43 ASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCccHHHHHHHHHHHHcCc
Confidence 79999999999999988753
No 356
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.37 E-value=0.0043 Score=42.73 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.0
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
+|||||||++..++..
T Consensus 33 ~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 33 DHGTGKSVLSQQFVYG 48 (234)
T ss_pred CCCCChHHHHHHHHHH
Confidence 6999999999998654
No 357
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.36 E-value=0.0022 Score=44.40 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 36 PSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998654
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.36 E-value=0.014 Score=39.97 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.9
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|||||||+++..++.
T Consensus 27 ~~GsGKT~l~~q~l~ 41 (226)
T PF06745_consen 27 PPGSGKTTLALQFLY 41 (226)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 799999999988654
No 359
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0022 Score=44.31 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 35 PSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998644
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.36 E-value=0.0022 Score=43.52 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+--.
T Consensus 21 ~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 21 APGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998644
No 361
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.36 E-value=0.002 Score=43.70 Aligned_cols=17 Identities=41% Similarity=0.395 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 33 ~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 33 PNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999997754
No 362
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.0028 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+|+||||+|+.||+.+++.
T Consensus 45 PpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 45 TRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999763
No 363
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0022 Score=44.25 Aligned_cols=17 Identities=41% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 36 PSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 364
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.34 E-value=0.0027 Score=45.95 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..|...+
T Consensus 64 ~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 64 VPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999987766
No 365
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.34 E-value=0.002 Score=44.32 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 34 PNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999998654
No 366
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0023 Score=43.59 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 34 PNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 367
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0026 Score=49.90 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.6
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++++.+|+.+|-.++
T Consensus 358 PPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 358 PPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred CCCCCchhHHHHHHHHhCCCEE
Confidence 8999999999999999986543
No 368
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.34 E-value=0.0023 Score=43.30 Aligned_cols=17 Identities=41% Similarity=0.255 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 34 PSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 369
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.34 E-value=0.0024 Score=43.56 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 39 ~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 39 SSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 370
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.0029 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.+|+.+.+.
T Consensus 46 p~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 46 LRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 89999999999999999764
No 371
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.33 E-value=0.003 Score=42.46 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.+...+
T Consensus 9 ~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 9 PVGSGKTALIEALTRAL 25 (199)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 68999999999988775
No 372
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.33 E-value=0.0033 Score=39.76 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+.+|||||+++.|.+.+
T Consensus 8 ~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINEL 24 (140)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999998876
No 373
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.33 E-value=0.0024 Score=42.02 Aligned_cols=17 Identities=41% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 36 RSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998754
No 374
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.33 E-value=0.0028 Score=47.55 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.7
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+|+.|+..+.
T Consensus 202 ppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 799999999999999885
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0025 Score=41.81 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 34 PNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 376
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.32 E-value=0.0032 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+||||+|+.+|+.++..++
T Consensus 355 ppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCCCCHHHHHHHHHHHhcCCeE
Confidence 8999999999999999986654
No 377
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.32 E-value=0.11 Score=42.05 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=42.6
Q ss_pred CCCCChhHHHHHHHHHh----CCceechhH-------HHHHH---Hhc-CCcchHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL----GFRHLSAGD-------LLEAE---AES-GSNDGKMIREYKKEGKLVPSEIIVKLLQKAM 65 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~----~~~~i~~d~-------~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (169)
|.|+||||++..+++.. +..+++.|. +.... +.. -+..+.....+.......+-......+..-+
T Consensus 45 PAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~El 124 (894)
T COG2909 45 PAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNEL 124 (894)
T ss_pred CCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 78999999999997533 244555442 22222 222 2333444445555555555544444444434
Q ss_pred HcCCCc-eEEEeCCCC
Q 040894 66 QESQNK-NFVIDGFPR 80 (169)
Q Consensus 66 ~~~~~~-~~i~d~~~~ 80 (169)
....+. .+|+|.|..
T Consensus 125 a~~~~pl~LVlDDyHl 140 (894)
T COG2909 125 ASYEGPLYLVLDDYHL 140 (894)
T ss_pred HhhcCceEEEeccccc
Confidence 443344 456788743
No 378
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.31 E-value=0.0024 Score=42.20 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 34 LVGNGQTELAEALFGLR 50 (182)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 379
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.31 E-value=0.0045 Score=47.33 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCCCChhHHHHHHHHHh---C--Cceec----hhHHHHHHHhcCCcchHHHHHHHHcCCC---------CCHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLS----AGDLLEAEAESGSNDGKMIREYKKEGKL---------VPSEIIVKLLQ 62 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~----~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~ 62 (169)
|||+||||++-.++... | ..+++ .+++.++.-.-| .....+...+.. ...+.....+.
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg----~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWG----IDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcC----CChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 79999999999987755 3 23333 334555442222 223333222211 11133355555
Q ss_pred HHHHcCCCceEEEeCC
Q 040894 63 KAMQESQNKNFVIDGF 78 (169)
Q Consensus 63 ~~~~~~~~~~~i~d~~ 78 (169)
..+.......+|+|+.
T Consensus 347 ~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 347 SEIADFKPARIAIDSL 362 (484)
T ss_pred HHHHHcCCCEEEEcCH
Confidence 5565544667888874
No 380
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.052 Score=37.60 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=40.4
Q ss_pred cCCCCCEEEEEEcCHHHHHHHHhcC-CC-----CCCCCcHHHHHHHHHHHhhchhhHHHHhh-hcCcEEEEeCCC
Q 040894 92 LKIEPNAVLVFDCSEEEMTRRILSR-NQ-----GRVDDKIDTIKKRLNVYSESTLPVINYYS-SKGKVRKIDAGR 159 (169)
Q Consensus 92 ~~~~~~~~i~l~~~~~~~~~R~~~R-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 159 (169)
..+..-+-+||.++.++..+|...| .. ..+.... .-..++..|.......+..=. ..++|++|.++.
T Consensus 175 ~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~WKlSp~D~-~~r~~WddYt~A~~em~~~T~T~~APW~vV~add 248 (270)
T COG2326 175 ESGIILVKFWLSISREEQLERFLERRNDPLKQWKLSPMDL-ESRDRWDDYTKAKDEMFARTSTPEAPWYVVPADD 248 (270)
T ss_pred hCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhccCCCHHHH-HHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCc
Confidence 3344557899999999999999988 11 1111112 223355666655544432222 446899998864
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.31 E-value=0.0029 Score=45.62 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||++..||..+
T Consensus 122 pnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999999877
No 382
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.0025 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 34 ANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 383
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.30 E-value=0.0025 Score=43.62 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 34 PSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998765
No 384
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.003 Score=48.49 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+|+||||+|+.||+.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 46 TRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999999763
No 385
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.026 Score=40.24 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHHHHhCCce--echhHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRH--LSAGDLLEAEA 32 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~--i~~d~~~~~~~ 32 (169)
|||+|||.||+.+|-.-+-.+ ++..|++-..+
T Consensus 174 PPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 174 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 899999999999999887444 55667776654
No 386
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.30 E-value=0.024 Score=40.99 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
||||||||+|-.++... + ..+++...-....... .++..+.+.+-. .....+...+.+..++....-..+|+
T Consensus 63 p~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~--~lGvd~~~l~v~-~p~~~eq~l~i~~~li~s~~~~lIVI 139 (325)
T cd00983 63 PESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAK--KLGVDLDNLLIS-QPDTGEQALEIADSLVRSGAVDLIVV 139 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHH--HcCCCHHHheec-CCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 79999999999987544 3 3455543322221110 011112222211 12233344556666665544566788
Q ss_pred eCC
Q 040894 76 DGF 78 (169)
Q Consensus 76 d~~ 78 (169)
|+.
T Consensus 140 DSv 142 (325)
T cd00983 140 DSV 142 (325)
T ss_pred cch
Confidence 873
No 387
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0025 Score=44.07 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 36 PSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 388
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.29 E-value=0.0026 Score=41.41 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 35 PSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997754
No 389
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.29 E-value=0.0032 Score=38.30 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+.+.|+...
T Consensus 7 ~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 7 DSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 58999999999998753
No 390
>PRK13695 putative NTPase; Provisional
Probab=96.29 E-value=0.0033 Score=41.25 Aligned_cols=17 Identities=53% Similarity=0.679 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.++..+
T Consensus 8 ~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 8 PPGVGKTTLVLKIAELL 24 (174)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999987765
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.29 E-value=0.0027 Score=41.60 Aligned_cols=17 Identities=47% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 36 PSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 68999999999998754
No 392
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.29 E-value=0.0026 Score=43.72 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 34 PNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 393
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.0029 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|||+||||+|+.|++.+.+
T Consensus 44 ppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 44 PRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 7999999999999999864
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0027 Score=41.50 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.++-.+
T Consensus 36 ~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 36 PSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999998765
No 395
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.021 Score=41.28 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCceEEE
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEAEAESGSNDGKMIREYKKEGKLVPSEIIVKLLQKAMQESQNKNFVI 75 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 75 (169)
||||||||++-.++... + ..+++...-....... .++......+. ......+.....+...+....-..+|+
T Consensus 63 ~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~--~lGvd~~~l~v-~~p~~~eq~l~~~~~li~~~~~~lIVI 139 (321)
T TIGR02012 63 PESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAR--KLGVDIDNLLV-SQPDTGEQALEIAETLVRSGAVDIIVV 139 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHH--HcCCCHHHeEE-ecCCCHHHHHHHHHHHhhccCCcEEEE
Confidence 79999999988876554 2 3356554333221110 01111222221 112233334555666665444566788
Q ss_pred eCC
Q 040894 76 DGF 78 (169)
Q Consensus 76 d~~ 78 (169)
|+.
T Consensus 140 DSv 142 (321)
T TIGR02012 140 DSV 142 (321)
T ss_pred cch
Confidence 873
No 396
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0027 Score=43.11 Aligned_cols=17 Identities=41% Similarity=0.347 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 31 ~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 31 ASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 397
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0031 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHhCCcee
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHL 22 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i 22 (169)
|||+|||++|+.||+.++.+++
T Consensus 496 P~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred CCCCCHHHHHHHHHHHhCCCcE
Confidence 8999999999999999986654
No 398
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.26 E-value=0.0037 Score=38.54 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+|||.+++.||+.+
T Consensus 61 ~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 61 WTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 69999999999999985
No 399
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.26 E-value=0.0026 Score=43.53 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 39 ESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 400
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0027 Score=43.95 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 37 PSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 401
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.26 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.2
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|+|+||||+|+.|++.+++.
T Consensus 45 p~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 45 PRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCCCCHHHHHHHHHHHhCcc
Confidence 78999999999999999763
No 402
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.25 E-value=0.0029 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-..
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 34 ENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997654
No 403
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0028 Score=42.31 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+++.|+-
T Consensus 41 ~nGsGKSTLl~~l~G 55 (192)
T cd03232 41 ESGAGKTTLLDVLAG 55 (192)
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999999985
No 404
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.25 E-value=0.0028 Score=43.71 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 35 PNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998654
No 405
>PRK12377 putative replication protein; Provisional
Probab=96.25 E-value=0.0071 Score=42.07 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHh---CC--ceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---GF--RHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~~--~~i~~d~~~~~ 30 (169)
|||+|||++|..++..+ +. .+++..+++..
T Consensus 109 ~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 69999999999999887 33 34555555544
No 406
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.25 E-value=0.0021 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=17.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechhH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGD 26 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~ 26 (169)
+||+||||+|+.|+. ...+++.|.
T Consensus 20 ~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 20 KPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCCCCHHHHHHhcCC--CCEEEeccc
Confidence 699999999999973 234555443
No 407
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.25 E-value=0.0033 Score=44.34 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||.+..||..+
T Consensus 80 ~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999999877
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.24 E-value=0.0027 Score=43.59 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 34 RNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 409
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.24 E-value=0.0043 Score=44.27 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.7
Q ss_pred CCCCChhHHHHHHHHHhCCceechhHH
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAGDL 27 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d~~ 27 (169)
|.|||||.+|-.||++ +..+|+.|.+
T Consensus 12 pTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 12 PTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 7899999999999999 5589998853
No 410
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.24 E-value=0.0028 Score=43.08 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 39 PNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998654
No 411
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0028 Score=44.29 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 35 ~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 35 PSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 412
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.24 E-value=0.0027 Score=43.89 Aligned_cols=16 Identities=56% Similarity=0.642 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 34 PNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999875
No 413
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.23 E-value=0.0029 Score=42.71 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 34 PNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998644
No 414
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.23 E-value=0.0029 Score=43.30 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 41 ~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 41 PSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998643
No 415
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0032 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.|++.+++.
T Consensus 46 PpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 46 TRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCCCHHHHHHHHHHhccCc
Confidence 79999999999999999764
No 416
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0031 Score=41.64 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|.||||||+.|.||--+
T Consensus 36 ~NG~GKTtLLRilaGLl 52 (209)
T COG4133 36 PNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCCCcHHHHHHHHHccc
Confidence 68999999999998654
No 417
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.0034 Score=47.85 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.7
Q ss_pred CCCCChhHHHHHHHHHhCCceec
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLS 23 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~ 23 (169)
|+|+||||..+.|++.+|+.++.
T Consensus 118 PsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 118 PSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred CCCCCchhHHHHHHHhhCceeee
Confidence 89999999999999999986554
No 418
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.21 E-value=0.0039 Score=40.32 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.9
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
++||||||+++.|...+.
T Consensus 9 ~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 9 YSGSGKTTLLEKLIPALS 26 (159)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999998873
No 419
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.21 E-value=0.003 Score=39.91 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.9
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+|||||||++.|...
T Consensus 9 ~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 9 PSGSGKTTLAQALNGE 24 (143)
T ss_pred CCCCCHHHHHHHHcCC
Confidence 6899999999999653
No 420
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.20 E-value=0.0029 Score=43.46 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 20 ~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 20 ESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.20 E-value=0.0029 Score=40.22 Aligned_cols=17 Identities=47% Similarity=0.489 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 34 RNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999997754
No 422
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.20 E-value=0.0034 Score=43.07 Aligned_cols=17 Identities=53% Similarity=0.612 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+|||||||+.+.+.+..
T Consensus 6 ~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 6 VPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 69999999999998873
No 423
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.003 Score=43.26 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-..
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 37 PTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 78999999999998755
No 424
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.19 E-value=0.0031 Score=43.20 Aligned_cols=17 Identities=41% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 44 ~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 44 ESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999998754
No 425
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.19 E-value=0.0031 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|+||||||+++.|+-.+.
T Consensus 41 ~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 41 SSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCCCCHHHHHHHHhCccC
Confidence 689999999999986543
No 426
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0031 Score=43.93 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 40 ~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 40 PSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 6899999999999854
No 427
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.18 E-value=0.0036 Score=42.07 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||||||++|+.+..-+.
T Consensus 30 ppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 30 PPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -CCCTHHHHHHHHHHCS-
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 799999999999998763
No 428
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0031 Score=44.17 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 47 ~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 47 PSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998653
No 429
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.17 E-value=0.0032 Score=43.78 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 37 PSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 430
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.17 E-value=0.0031 Score=43.91 Aligned_cols=17 Identities=47% Similarity=0.513 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 37 ESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 431
>PRK10908 cell division protein FtsE; Provisional
Probab=96.17 E-value=0.0032 Score=42.95 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 36 HSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 432
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.17 E-value=0.054 Score=41.05 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCCChhHHHHHHHHHh-----C--CceechhHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL-----G--FRHLSAGDLLEAE 31 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~-----~--~~~i~~d~~~~~~ 31 (169)
|||+|||++++.+++.+ + ..+++..++....
T Consensus 138 ~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 79999999999999875 2 3466777766554
No 433
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.16 E-value=0.0034 Score=41.44 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.++-..
T Consensus 33 ~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 33 PNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 434
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0032 Score=43.27 Aligned_cols=17 Identities=41% Similarity=0.514 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 36 PSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998654
No 435
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0033 Score=43.52 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 35 PSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 436
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.0033 Score=43.74 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 33 ~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 33 PNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 437
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0033 Score=43.99 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 38 ~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 38 PSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998643
No 438
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0033 Score=43.98 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 46 ~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 46 PSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998643
No 439
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.15 E-value=0.0034 Score=45.77 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=16.1
Q ss_pred CCCCChhHHHHHHHHHhC
Q 040894 1 GPGSGKSTQCSKIAKHLG 18 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~ 18 (169)
|||+||||+|+.|+..-.
T Consensus 170 ppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSK 187 (554)
T ss_pred CCCCchHHHHHHHHhhcC
Confidence 899999999999988653
No 440
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.15 E-value=0.0033 Score=43.97 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.2
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 40 ESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998755
No 441
>PRK04296 thymidine kinase; Provisional
Probab=96.14 E-value=0.0039 Score=41.61 Aligned_cols=17 Identities=35% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
||||||||++..++.++
T Consensus 10 ~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 10 AMNSGKSTELLQRAYNY 26 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999998877
No 442
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0034 Score=42.46 Aligned_cols=17 Identities=47% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 32 ~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 32 PSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14 E-value=0.0035 Score=42.08 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++-..
T Consensus 35 ~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 35 SNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997654
No 444
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.0041 Score=47.98 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.2
Q ss_pred CCCCChhHHHHHHHHHhCCc
Q 040894 1 GPGSGKSTQCSKIAKHLGFR 20 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~ 20 (169)
|||+||||+|+.|++.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 46 TRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999999763
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.003 Score=42.54 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 41 ~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 41 RPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCCCHHHHHHHhcccC
Confidence 68999999999998754
No 446
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0034 Score=43.66 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 37 PSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998654
No 447
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0035 Score=42.23 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 35 PNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 448
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.12 E-value=0.0035 Score=43.06 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 19 ~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 19 HSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 449
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0032 Score=43.37 Aligned_cols=17 Identities=41% Similarity=0.378 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||+++.|+--+
T Consensus 38 ~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 38 PNGSGKSTLLKLLNGLL 54 (235)
T ss_pred CCCCCHHHHHHHHcCcC
Confidence 68999999999996543
No 450
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0035 Score=43.69 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 38 PSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998653
No 451
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0034 Score=43.14 Aligned_cols=17 Identities=47% Similarity=0.509 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 33 PSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997754
No 452
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0036 Score=43.83 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 46 ~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 46 RSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 453
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.10 E-value=0.0036 Score=42.43 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 32 PSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 454
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.10 E-value=0.0035 Score=43.66 Aligned_cols=17 Identities=35% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 34 PSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 455
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.10 E-value=0.0035 Score=42.89 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 56 ~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 56 RNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 456
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0039 Score=40.66 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.+.|...|
T Consensus 45 ~SG~GKStllr~LYaNY 61 (235)
T COG4778 45 PSGSGKSTLLRSLYANY 61 (235)
T ss_pred CCCCcHHHHHHHHHhcc
Confidence 79999999999997766
No 457
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.10 E-value=0.0036 Score=43.15 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 36 RSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 68999999999998654
No 458
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0035 Score=44.21 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 41 ~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 41 VNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 459
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.09 E-value=0.0037 Score=43.59 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++-.+
T Consensus 38 ~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 38 PNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998653
No 460
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0037 Score=43.98 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 55 ~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 55 PSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 6899999999999863
No 461
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0038 Score=41.67 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||+.+.+|--.
T Consensus 39 pSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 39 PSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CCCccHHHHHHHHhcCc
Confidence 79999999999998644
No 462
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0037 Score=44.01 Aligned_cols=17 Identities=35% Similarity=0.261 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 43 ~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 43 HNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999998654
No 463
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.08 E-value=0.0036 Score=44.07 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 41 ~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 41 PSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 464
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0038 Score=43.17 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 37 PNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 465
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.07 E-value=0.0038 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 42 ~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 42 PSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 466
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.07 E-value=0.0045 Score=37.62 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.7
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
+|||||||+.+.|..
T Consensus 7 ~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 7 RPNVGKSTLINALTG 21 (116)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999985
No 467
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.07 E-value=0.0038 Score=42.49 Aligned_cols=17 Identities=41% Similarity=0.347 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 38 ~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 38 RVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 68999999999998654
No 468
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.07 E-value=0.0038 Score=43.07 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 37 ~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 37 SSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998764
No 469
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.07 E-value=0.0038 Score=43.13 Aligned_cols=17 Identities=47% Similarity=0.358 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 35 PSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 470
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.07 E-value=0.0055 Score=35.55 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=18.4
Q ss_pred CCCChhHHHHHHHHHh---CCceechh
Q 040894 2 PGSGKSTQCSKIAKHL---GFRHLSAG 25 (169)
Q Consensus 2 ~GsGKsTla~~La~~~---~~~~i~~d 25 (169)
+|+||||++..|+..+ |..++-.|
T Consensus 8 ~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 8 GGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5999999999999987 45444443
No 471
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0038 Score=43.51 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+++.|+-
T Consensus 40 ~nGsGKSTLl~~l~G 54 (253)
T PRK14261 40 PSGCGKSTLLRCFNR 54 (253)
T ss_pred CCCCCHHHHHHHHhc
Confidence 689999999999984
No 472
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.06 E-value=0.0038 Score=42.67 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+..+
T Consensus 14 ~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 14 PNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 473
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0039 Score=43.85 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 53 ~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 53 PSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998754
No 474
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.06 E-value=0.004 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 34 PNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 475
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.06 E-value=0.11 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCCChhHHHHHHHHHh---C--CceechhHHHHH
Q 040894 1 GPGSGKSTQCSKIAKHL---G--FRHLSAGDLLEA 30 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~---~--~~~i~~d~~~~~ 30 (169)
|||+|||++++.++..+ + ..+++.+++...
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 149 PEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 79999999999999865 3 345666655544
No 476
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.05 E-value=0.004 Score=42.41 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 38 ~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 38 RTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999998654
No 477
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0039 Score=43.93 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=14.4
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 47 ~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 47 PSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 6899999999999864
No 478
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0039 Score=43.34 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 37 ~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 37 PSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 6899999999999853
No 479
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0038 Score=44.23 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 41 ~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 41 HTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 480
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.004 Score=43.36 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 38 PSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 68999999999998754
No 481
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.005 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCCChhHHHHHHHHHhCC
Q 040894 1 GPGSGKSTQCSKIAKHLGF 19 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~ 19 (169)
|+|+||||+|+.+|+.+.+
T Consensus 46 P~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 46 PRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999865
No 482
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.04 E-value=0.0041 Score=41.85 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.++-..
T Consensus 39 ~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 39 PVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCCHHHHHHHHhCcC
Confidence 68999999999997754
No 483
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.03 E-value=0.004 Score=43.21 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.6
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 35 PSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998543
No 484
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.03 E-value=0.0052 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|||+|||+++..++...
T Consensus 7 ~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 7 GPGTGKTTFALQFLYAG 23 (187)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999876644
No 485
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.03 E-value=0.0041 Score=42.92 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.9
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 55 ~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 55 PNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998754
No 486
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0042 Score=42.47 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+.|.|..-.
T Consensus 38 ~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 38 PSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCCCcHHHHHHHHhccc
Confidence 68999999999997744
No 487
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.0049 Score=45.35 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+|+||||++..|+..+
T Consensus 145 ptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 145 PTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999764
No 488
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0042 Score=42.80 Aligned_cols=17 Identities=35% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 35 ~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 35 PSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998654
No 489
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.0039 Score=43.46 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 39 PNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998754
No 490
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.02 E-value=0.0036 Score=47.32 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCCCChhHHHHHHHHHh----CCceechhHHH
Q 040894 1 GPGSGKSTQCSKIAKHL----GFRHLSAGDLL 28 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~----~~~~i~~d~~~ 28 (169)
|+||||||++|.|---+ |..-+|.-++.
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 89999999999986654 33445544443
No 491
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0041 Score=43.29 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.2
Q ss_pred CCCCChhHHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAKH 16 (169)
Q Consensus 1 ~~GsGKsTla~~La~~ 16 (169)
|+||||||+++.|+-.
T Consensus 39 ~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 39 PSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCCCHHHHHHHHhcc
Confidence 6899999999999763
No 492
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.01 E-value=0.0054 Score=39.18 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.5
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
++||||||++..++..+
T Consensus 7 ~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 7 VPGAGKSTLIDALITAL 23 (148)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 58999999999999876
No 493
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0042 Score=43.21 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.8
Q ss_pred CCCCChhHHHHHHHH
Q 040894 1 GPGSGKSTQCSKIAK 15 (169)
Q Consensus 1 ~~GsGKsTla~~La~ 15 (169)
|+||||||+++.|+-
T Consensus 37 ~nGsGKSTLl~~i~G 51 (250)
T PRK14262 37 PSGCGKTTLLRSINR 51 (250)
T ss_pred CCCCCHHHHHHHHhc
Confidence 689999999999985
No 494
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0042 Score=43.20 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.8
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 38 PSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 68999999999998643
No 495
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.0041 Score=44.28 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 45 TTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 496
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.00 E-value=0.0043 Score=43.36 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-.+
T Consensus 34 ~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 34 PNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998765
No 497
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.00 E-value=0.0044 Score=41.84 Aligned_cols=17 Identities=47% Similarity=0.434 Sum_probs=15.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
|+||||||+++.|+-..
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 36 PNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 498
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0065 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCCCChhHHHHHHHHHhCCceechh
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSAG 25 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~d 25 (169)
|.|||||-+|.-||+.++.|+--.|
T Consensus 105 PTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 105 PTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred CCCCcHHHHHHHHHHHhCCCeeecc
Confidence 7899999999999999987764443
No 499
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0053 Score=43.43 Aligned_cols=17 Identities=41% Similarity=0.667 Sum_probs=16.0
Q ss_pred CCCCChhHHHHHHHHHh
Q 040894 1 GPGSGKSTQCSKIAKHL 17 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~ 17 (169)
+||+||||+...|..++
T Consensus 59 ~PGaGKSTli~~L~~~l 75 (323)
T COG1703 59 VPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 69999999999999988
No 500
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.99 E-value=0.005 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHhCCceech
Q 040894 1 GPGSGKSTQCSKIAKHLGFRHLSA 24 (169)
Q Consensus 1 ~~GsGKsTla~~La~~~~~~~i~~ 24 (169)
|||+||||+++.++...+.+++..
T Consensus 193 ~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999998876543
Done!